Multiple sequence alignment - TraesCS3A01G237100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G237100 chr3A 100.000 5347 0 0 1 5347 443123588 443118242 0.000000e+00 9875.0
1 TraesCS3A01G237100 chr3A 100.000 100 0 0 5630 5729 443117959 443117860 9.800000e-43 185.0
2 TraesCS3A01G237100 chr3A 86.441 59 8 0 2734 2792 195460580 195460638 1.330000e-06 65.8
3 TraesCS3A01G237100 chr3D 94.670 4672 146 46 623 5230 328519567 328514935 0.000000e+00 7153.0
4 TraesCS3A01G237100 chr3D 97.143 35 0 1 1 34 296138014 296137980 2.230000e-04 58.4
5 TraesCS3A01G237100 chr3D 94.444 36 1 1 1 36 421147779 421147745 3.000000e-03 54.7
6 TraesCS3A01G237100 chr3B 93.099 2898 120 39 623 3468 425681798 425678929 0.000000e+00 4170.0
7 TraesCS3A01G237100 chr3B 94.665 1612 39 10 3467 5054 425678770 425677182 0.000000e+00 2457.0
8 TraesCS3A01G237100 chr3B 90.562 445 24 3 131 566 425682323 425681888 1.790000e-159 573.0
9 TraesCS3A01G237100 chr3B 92.661 109 5 1 501 609 425681887 425681782 2.760000e-33 154.0
10 TraesCS3A01G237100 chr3B 92.308 104 8 0 30 133 425682472 425682369 1.290000e-31 148.0
11 TraesCS3A01G237100 chr3B 86.486 111 8 2 27 130 116194265 116194375 1.300000e-21 115.0
12 TraesCS3A01G237100 chr3B 94.595 37 1 1 1 36 295812127 295812163 8.020000e-04 56.5
13 TraesCS3A01G237100 chr1B 82.946 387 39 12 131 508 489208147 489207779 1.990000e-84 324.0
14 TraesCS3A01G237100 chr1B 87.129 101 9 3 2734 2834 604324817 604324913 1.690000e-20 111.0
15 TraesCS3A01G237100 chr1B 93.478 46 3 0 88 133 489208238 489208193 1.030000e-07 69.4
16 TraesCS3A01G237100 chr5A 88.350 103 9 1 5630 5729 684707825 684707927 2.800000e-23 121.0
17 TraesCS3A01G237100 chr1D 87.129 101 10 2 2734 2834 444347386 444347483 1.690000e-20 111.0
18 TraesCS3A01G237100 chr1D 97.222 36 0 1 1 36 108693744 108693778 6.200000e-05 60.2
19 TraesCS3A01G237100 chr1D 100.000 30 0 0 1 30 337558026 337558055 8.020000e-04 56.5
20 TraesCS3A01G237100 chr1A 94.444 72 4 0 5231 5302 547390699 547390628 1.690000e-20 111.0
21 TraesCS3A01G237100 chr5D 83.838 99 13 2 5630 5725 382034159 382034061 2.200000e-14 91.6
22 TraesCS3A01G237100 chr5D 85.000 80 12 0 5646 5725 382004441 382004520 1.320000e-11 82.4
23 TraesCS3A01G237100 chr6B 82.796 93 11 3 5630 5718 624609083 624609174 1.710000e-10 78.7
24 TraesCS3A01G237100 chr6B 97.059 34 1 0 1 34 118784804 118784771 2.230000e-04 58.4
25 TraesCS3A01G237100 chr4A 79.245 106 11 7 5129 5224 119087199 119087095 4.790000e-06 63.9
26 TraesCS3A01G237100 chr4A 97.059 34 0 1 1 34 320050399 320050431 8.020000e-04 56.5
27 TraesCS3A01G237100 chr4D 97.143 35 1 0 5251 5285 507781591 507781625 6.200000e-05 60.2
28 TraesCS3A01G237100 chr2D 97.059 34 1 0 1 34 280959097 280959130 2.230000e-04 58.4
29 TraesCS3A01G237100 chr7D 94.595 37 1 1 1 37 565574736 565574701 8.020000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G237100 chr3A 443117860 443123588 5728 True 5030.0 9875 100.000 1 5729 2 chr3A.!!$R1 5728
1 TraesCS3A01G237100 chr3D 328514935 328519567 4632 True 7153.0 7153 94.670 623 5230 1 chr3D.!!$R2 4607
2 TraesCS3A01G237100 chr3B 425677182 425682472 5290 True 1500.4 4170 92.659 30 5054 5 chr3B.!!$R1 5024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 574 0.179062 GCCTCTGTATCAGGTGGCAG 60.179 60.000 20.21 0.00 44.28 4.85 F
1170 1313 0.108207 GGGTGATGCCAGGAGATCTG 59.892 60.000 0.00 0.00 43.00 2.90 F
1329 1472 1.066215 TGGCGAGATAACTGCACATGT 60.066 47.619 0.00 0.00 0.00 3.21 F
1351 1494 1.274167 TGACACCTTGGGTACGATCAC 59.726 52.381 0.00 0.00 32.11 3.06 F
1785 1956 1.450531 CTGATCCGCTTGGGCCATTC 61.451 60.000 7.26 0.47 34.94 2.67 F
3274 3448 1.239968 GCCTGGACTGGTTTCTGCAG 61.240 60.000 7.63 7.63 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1367 1510 1.002134 CAACCCTGCACCTTCCGAT 60.002 57.895 0.00 0.0 0.00 4.18 R
3095 3269 1.055849 TTGCTAGCACCAGTTCTCCA 58.944 50.000 19.17 0.0 0.00 3.86 R
3096 3270 1.807142 GTTTGCTAGCACCAGTTCTCC 59.193 52.381 19.17 0.0 0.00 3.71 R
3117 3291 7.386025 AGAAACAAAAAGGCAAAGAATATCAGC 59.614 33.333 0.00 0.0 0.00 4.26 R
3481 3826 4.346418 AGCCTGATCTAATTGTCTCGGAAT 59.654 41.667 0.00 0.0 0.00 3.01 R
5231 5621 0.251787 AGGAACCAACAGGCATTCCC 60.252 55.000 0.00 0.0 41.39 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.747177 TGATCCCATAGGTGTCGTTCT 58.253 47.619 0.00 0.00 0.00 3.01
21 22 2.693591 TGATCCCATAGGTGTCGTTCTC 59.306 50.000 0.00 0.00 0.00 2.87
22 23 2.225382 TCCCATAGGTGTCGTTCTCA 57.775 50.000 0.00 0.00 0.00 3.27
23 24 1.822990 TCCCATAGGTGTCGTTCTCAC 59.177 52.381 0.00 0.00 35.36 3.51
56 57 4.600062 GTTCCCCATGTCTCCTATTGTTT 58.400 43.478 0.00 0.00 0.00 2.83
58 59 3.118408 TCCCCATGTCTCCTATTGTTTCG 60.118 47.826 0.00 0.00 0.00 3.46
63 64 5.063944 CCATGTCTCCTATTGTTTCGTTCTG 59.936 44.000 0.00 0.00 0.00 3.02
71 72 2.234300 TGTTTCGTTCTGTCCAGACC 57.766 50.000 0.00 0.00 37.14 3.85
118 119 3.005155 GCAGCAAGTGATTCTGGAACTTT 59.995 43.478 0.00 0.00 31.88 2.66
121 122 4.759183 AGCAAGTGATTCTGGAACTTTCTC 59.241 41.667 0.00 0.00 31.88 2.87
127 128 4.750098 TGATTCTGGAACTTTCTCGTTGTC 59.250 41.667 0.00 0.00 0.00 3.18
139 188 4.131649 TCTCGTTGTCAAGAAGGAAACA 57.868 40.909 0.00 0.00 0.00 2.83
143 192 4.331717 TCGTTGTCAAGAAGGAAACACTTC 59.668 41.667 0.00 0.00 45.59 3.01
153 202 4.487714 AGGAAACACTTCAGTTCAGACA 57.512 40.909 0.00 0.00 32.75 3.41
191 240 5.361135 TGTACAAGAGAACAATGCATGTG 57.639 39.130 0.00 3.58 42.99 3.21
193 242 4.924305 ACAAGAGAACAATGCATGTGTT 57.076 36.364 20.13 20.13 42.99 3.32
194 243 6.484977 TGTACAAGAGAACAATGCATGTGTTA 59.515 34.615 20.08 6.95 42.99 2.41
195 244 6.579666 ACAAGAGAACAATGCATGTGTTAT 57.420 33.333 20.08 18.26 42.99 1.89
196 245 6.985117 ACAAGAGAACAATGCATGTGTTATT 58.015 32.000 20.08 14.29 42.99 1.40
197 246 6.864685 ACAAGAGAACAATGCATGTGTTATTG 59.135 34.615 23.44 23.44 42.99 1.90
198 247 6.579666 AGAGAACAATGCATGTGTTATTGT 57.420 33.333 20.08 9.69 42.99 2.71
205 254 6.308524 ACAATGCATGTGTTATTGTTTCATCG 59.691 34.615 0.00 0.00 40.93 3.84
210 259 6.402550 GCATGTGTTATTGTTTCATCGACTCT 60.403 38.462 0.00 0.00 0.00 3.24
237 295 7.573656 GCAATCCTCGCAAAATGATATATGACA 60.574 37.037 0.00 0.00 0.00 3.58
244 302 7.495606 TCGCAAAATGATATATGACACTTCTGT 59.504 33.333 0.00 0.00 0.00 3.41
285 343 7.038729 TGGCACAAATTTGTTAATAATCCTCCA 60.039 33.333 21.10 11.56 39.91 3.86
334 392 3.909732 TGGGATTTTCCACAACTTCTGT 58.090 40.909 0.00 0.00 38.64 3.41
355 413 5.907207 TGTCAATGACTAATAGGAGCAGTC 58.093 41.667 14.97 0.00 39.32 3.51
376 434 1.142748 GGAGGTGGATGCACTCTCG 59.857 63.158 17.44 0.00 0.00 4.04
394 452 4.755411 TCTCGTTTTGTCTCTTCAACTGT 58.245 39.130 0.00 0.00 0.00 3.55
399 457 8.651391 TCGTTTTGTCTCTTCAACTGTAATAA 57.349 30.769 0.00 0.00 0.00 1.40
433 491 4.319177 CAGACCGAACAGAGAAATTTCCT 58.681 43.478 14.61 8.70 0.00 3.36
455 513 5.649831 CCTAATTTATCATGCTTCTAGGCCC 59.350 44.000 0.00 0.00 0.00 5.80
459 517 1.811778 TCATGCTTCTAGGCCCAGAT 58.188 50.000 0.29 0.00 0.00 2.90
491 549 4.808665 GCATATGCCCCACATGAACTCTAT 60.809 45.833 17.26 0.00 40.06 1.98
516 574 0.179062 GCCTCTGTATCAGGTGGCAG 60.179 60.000 20.21 0.00 44.28 4.85
583 707 2.259917 TCAATGAGCTCTTCCACCAGA 58.740 47.619 16.19 0.00 0.00 3.86
589 713 1.980765 AGCTCTTCCACCAGATTGACA 59.019 47.619 0.00 0.00 0.00 3.58
590 714 2.575279 AGCTCTTCCACCAGATTGACAT 59.425 45.455 0.00 0.00 0.00 3.06
591 715 2.941720 GCTCTTCCACCAGATTGACATC 59.058 50.000 0.00 0.00 0.00 3.06
592 716 3.620719 GCTCTTCCACCAGATTGACATCA 60.621 47.826 0.00 0.00 0.00 3.07
593 717 4.778579 CTCTTCCACCAGATTGACATCAT 58.221 43.478 0.00 0.00 0.00 2.45
594 718 4.774124 TCTTCCACCAGATTGACATCATC 58.226 43.478 0.00 0.00 0.00 2.92
595 719 4.225717 TCTTCCACCAGATTGACATCATCA 59.774 41.667 0.00 0.00 34.65 3.07
596 720 4.783560 TCCACCAGATTGACATCATCAT 57.216 40.909 0.00 0.00 37.11 2.45
597 721 4.457466 TCCACCAGATTGACATCATCATG 58.543 43.478 0.00 0.00 37.11 3.07
598 722 3.004419 CCACCAGATTGACATCATCATGC 59.996 47.826 0.00 0.00 37.11 4.06
599 723 3.630312 CACCAGATTGACATCATCATGCA 59.370 43.478 0.00 0.00 37.11 3.96
600 724 3.630769 ACCAGATTGACATCATCATGCAC 59.369 43.478 0.00 0.00 37.11 4.57
601 725 3.630312 CCAGATTGACATCATCATGCACA 59.370 43.478 0.00 0.00 37.11 4.57
602 726 4.497507 CCAGATTGACATCATCATGCACAC 60.498 45.833 0.00 0.00 37.11 3.82
603 727 4.095782 CAGATTGACATCATCATGCACACA 59.904 41.667 0.00 0.00 37.11 3.72
604 728 4.703093 AGATTGACATCATCATGCACACAA 59.297 37.500 0.00 0.00 37.11 3.33
605 729 5.359860 AGATTGACATCATCATGCACACAAT 59.640 36.000 0.00 0.00 37.11 2.71
606 730 4.364415 TGACATCATCATGCACACAATG 57.636 40.909 0.00 0.00 32.57 2.82
607 731 3.759618 TGACATCATCATGCACACAATGT 59.240 39.130 0.00 0.00 32.57 2.71
608 732 4.218852 TGACATCATCATGCACACAATGTT 59.781 37.500 0.00 0.00 32.57 2.71
609 733 5.142061 ACATCATCATGCACACAATGTTT 57.858 34.783 0.00 0.00 32.57 2.83
610 734 5.543714 ACATCATCATGCACACAATGTTTT 58.456 33.333 0.00 0.00 32.57 2.43
611 735 5.992829 ACATCATCATGCACACAATGTTTTT 59.007 32.000 0.00 0.00 32.57 1.94
708 832 1.413118 CCAAAAACTCCTTGGCCACT 58.587 50.000 3.88 0.00 37.14 4.00
723 847 1.059913 CCACTGAGGTCCCAAAGTCT 58.940 55.000 0.00 0.00 0.00 3.24
725 849 1.974236 CACTGAGGTCCCAAAGTCTCT 59.026 52.381 0.00 0.00 0.00 3.10
726 850 2.370189 CACTGAGGTCCCAAAGTCTCTT 59.630 50.000 0.00 0.00 0.00 2.85
735 859 1.611673 CCAAAGTCTCTTCACCCGCAT 60.612 52.381 0.00 0.00 0.00 4.73
748 872 1.678598 CCCGCATGCACCATCCAAAT 61.679 55.000 19.57 0.00 0.00 2.32
752 876 1.207570 GCATGCACCATCCAAATTCCA 59.792 47.619 14.21 0.00 0.00 3.53
763 887 3.321950 TCCAAATTCCAAAACACCCCAT 58.678 40.909 0.00 0.00 0.00 4.00
767 891 0.563173 TTCCAAAACACCCCATCCCA 59.437 50.000 0.00 0.00 0.00 4.37
769 893 0.684535 CCAAAACACCCCATCCCAAC 59.315 55.000 0.00 0.00 0.00 3.77
771 895 0.565674 AAAACACCCCATCCCAACCT 59.434 50.000 0.00 0.00 0.00 3.50
821 948 4.191544 CGGAGTGAGGCAGATTTAAATGA 58.808 43.478 5.17 0.00 0.00 2.57
914 1042 1.271102 GTTGCTCACTCCGTTCTCTCT 59.729 52.381 0.00 0.00 0.00 3.10
918 1046 2.442413 CTCACTCCGTTCTCTCTCCTT 58.558 52.381 0.00 0.00 0.00 3.36
986 1114 4.148825 CCCGACCTCCGAGGCAAG 62.149 72.222 14.86 5.93 39.63 4.01
1024 1159 2.671351 GCGTTCGAGAAGATCAAGGTCA 60.671 50.000 0.00 0.00 0.00 4.02
1062 1197 1.689582 GGACGGTCAGATCCCCCTT 60.690 63.158 10.76 0.00 0.00 3.95
1066 1201 1.915983 GGTCAGATCCCCCTTCCAC 59.084 63.158 0.00 0.00 0.00 4.02
1067 1202 0.621862 GGTCAGATCCCCCTTCCACT 60.622 60.000 0.00 0.00 0.00 4.00
1068 1203 0.833949 GTCAGATCCCCCTTCCACTC 59.166 60.000 0.00 0.00 0.00 3.51
1069 1204 0.326618 TCAGATCCCCCTTCCACTCC 60.327 60.000 0.00 0.00 0.00 3.85
1070 1205 0.621571 CAGATCCCCCTTCCACTCCA 60.622 60.000 0.00 0.00 0.00 3.86
1125 1267 3.070446 TCCCTTGCCGATATAAACGATGT 59.930 43.478 0.00 0.00 0.00 3.06
1161 1304 3.716195 CTGGTCGGGGTGATGCCA 61.716 66.667 0.00 0.00 39.65 4.92
1170 1313 0.108207 GGGTGATGCCAGGAGATCTG 59.892 60.000 0.00 0.00 43.00 2.90
1171 1314 1.126488 GGTGATGCCAGGAGATCTGA 58.874 55.000 0.00 0.00 46.18 3.27
1176 1319 2.771562 TGCCAGGAGATCTGAGAGAT 57.228 50.000 0.00 0.00 46.18 2.75
1177 1320 2.317973 TGCCAGGAGATCTGAGAGATG 58.682 52.381 0.00 0.00 46.18 2.90
1179 1322 3.117360 TGCCAGGAGATCTGAGAGATGTA 60.117 47.826 0.00 0.00 46.18 2.29
1243 1386 1.625315 TGGGTTCAGGTGTCTCTGATG 59.375 52.381 0.00 0.00 42.57 3.07
1244 1387 1.625818 GGGTTCAGGTGTCTCTGATGT 59.374 52.381 0.00 0.00 42.57 3.06
1245 1388 2.354203 GGGTTCAGGTGTCTCTGATGTC 60.354 54.545 0.00 0.00 42.57 3.06
1246 1389 2.564947 GGTTCAGGTGTCTCTGATGTCT 59.435 50.000 0.00 0.00 42.57 3.41
1247 1390 3.583806 GTTCAGGTGTCTCTGATGTCTG 58.416 50.000 0.00 0.00 42.57 3.51
1248 1391 3.160679 TCAGGTGTCTCTGATGTCTGA 57.839 47.619 0.00 0.00 38.70 3.27
1249 1392 3.706183 TCAGGTGTCTCTGATGTCTGAT 58.294 45.455 0.00 0.00 38.70 2.90
1250 1393 3.698539 TCAGGTGTCTCTGATGTCTGATC 59.301 47.826 0.00 0.00 38.70 2.92
1251 1394 3.700539 CAGGTGTCTCTGATGTCTGATCT 59.299 47.826 0.00 0.00 36.93 2.75
1252 1395 4.886489 CAGGTGTCTCTGATGTCTGATCTA 59.114 45.833 0.00 0.00 36.93 1.98
1253 1396 5.535783 CAGGTGTCTCTGATGTCTGATCTAT 59.464 44.000 0.00 0.00 36.93 1.98
1264 1407 8.270080 TGATGTCTGATCTATTATCTCCGTAC 57.730 38.462 0.00 0.00 0.00 3.67
1320 1463 4.226113 AGAACGTAGATGGCGAGATAAC 57.774 45.455 0.00 0.00 0.00 1.89
1329 1472 1.066215 TGGCGAGATAACTGCACATGT 60.066 47.619 0.00 0.00 0.00 3.21
1351 1494 1.274167 TGACACCTTGGGTACGATCAC 59.726 52.381 0.00 0.00 32.11 3.06
1360 1503 2.159296 TGGGTACGATCACGATTGTCTG 60.159 50.000 3.13 0.00 42.66 3.51
1394 1537 1.914263 TGCAGGGTTGGGCGTACTA 60.914 57.895 0.00 0.00 0.00 1.82
1411 1571 5.145059 CGTACTATGCCTGACGTATAACTG 58.855 45.833 0.00 0.00 0.00 3.16
1425 1585 4.441415 CGTATAACTGCTGGATCTCGTTTC 59.559 45.833 0.00 0.00 0.00 2.78
1680 1851 2.543848 TGTCGTGCTGATGTCTTGTTTC 59.456 45.455 0.00 0.00 0.00 2.78
1785 1956 1.450531 CTGATCCGCTTGGGCCATTC 61.451 60.000 7.26 0.47 34.94 2.67
1828 2000 2.553685 CCATATGCTGCCAGGCTGATTA 60.554 50.000 22.08 11.89 0.00 1.75
1831 2003 2.148446 TGCTGCCAGGCTGATTATTT 57.852 45.000 22.08 0.00 0.00 1.40
1832 2004 2.026641 TGCTGCCAGGCTGATTATTTC 58.973 47.619 22.08 2.94 0.00 2.17
1998 2170 4.763793 AGTTTCTGCTGATGTTATGCTTGT 59.236 37.500 0.00 0.00 0.00 3.16
2036 2208 4.587891 TGATTGCTGTGATCACACCATTA 58.412 39.130 24.56 10.83 45.40 1.90
2043 2215 2.742053 GTGATCACACCATTACAAGCGT 59.258 45.455 21.07 0.00 40.74 5.07
2056 2228 6.259167 CCATTACAAGCGTTTTATGTAGCCTA 59.741 38.462 0.00 0.00 31.72 3.93
2057 2229 7.041372 CCATTACAAGCGTTTTATGTAGCCTAT 60.041 37.037 0.00 0.00 31.72 2.57
2077 2249 8.088365 AGCCTATAATTTGTTTGTCCTGTTTTC 58.912 33.333 0.00 0.00 0.00 2.29
2112 2284 6.134535 AGTTCTGTTGTGGTATATTTCCCA 57.865 37.500 0.00 0.00 0.00 4.37
2132 2304 5.878116 TCCCAACGAATTTTGAGTACTATGG 59.122 40.000 0.00 0.00 0.00 2.74
2189 2361 4.870991 GTGAGGCAGATACCTTTTCACTAC 59.129 45.833 0.00 0.00 41.32 2.73
2317 2489 9.982651 GTTCTATAGTGCTGTTCTAATCCAATA 57.017 33.333 0.00 0.00 0.00 1.90
2557 2729 6.416750 GCACAATTAGGAACATTATAAACGGC 59.583 38.462 0.00 0.00 0.00 5.68
2729 2901 6.062258 TGTTCCAGGTAAGGAGGATTAAAG 57.938 41.667 0.00 0.00 39.25 1.85
2759 2931 3.260884 TCCCTCCGATTCATATTACCTGC 59.739 47.826 0.00 0.00 0.00 4.85
2817 2990 7.387948 GCAGTAACAAATAATATGGATCGGAGT 59.612 37.037 0.00 0.00 0.00 3.85
2857 3030 5.163302 TCTAACGTGAACACACATTTTGG 57.837 39.130 5.80 0.00 34.59 3.28
3029 3202 4.680171 GTTGCATAACCACTCCACTTAC 57.320 45.455 0.00 0.00 0.00 2.34
3037 3211 5.959618 AACCACTCCACTTACAATTAAGC 57.040 39.130 0.00 0.00 38.71 3.09
3095 3269 9.737427 TTTCACGTATGATTGTATTGTTTGTTT 57.263 25.926 0.00 0.00 33.85 2.83
3096 3270 8.720909 TCACGTATGATTGTATTGTTTGTTTG 57.279 30.769 0.00 0.00 0.00 2.93
3117 3291 1.461127 GAGAACTGGTGCTAGCAAACG 59.539 52.381 21.29 12.60 0.00 3.60
3274 3448 1.239968 GCCTGGACTGGTTTCTGCAG 61.240 60.000 7.63 7.63 0.00 4.41
3597 3942 1.134007 TGAGGCTGCTGGAATATGGTG 60.134 52.381 0.00 0.00 0.00 4.17
3631 3976 2.838736 TCTTGCTTCGAGCTCTTTTGT 58.161 42.857 12.85 0.00 42.97 2.83
3891 4237 2.944129 AGTGTATGTGCAGGTTTTGGT 58.056 42.857 0.00 0.00 0.00 3.67
3978 4324 7.496346 TGACTAAATCTTGGGTGTTATCTCT 57.504 36.000 0.00 0.00 0.00 3.10
4016 4362 6.017934 CCTTTACTTTGGTCATATCCATGTCG 60.018 42.308 0.00 0.00 37.33 4.35
4232 4578 2.637872 ACTTGCACACAGGTACACCTAT 59.362 45.455 0.00 0.00 46.65 2.57
4314 4680 4.767409 GGGTAATTTCCTCTTTGTTCAGCT 59.233 41.667 0.73 0.00 0.00 4.24
4315 4681 5.944007 GGGTAATTTCCTCTTTGTTCAGCTA 59.056 40.000 0.73 0.00 0.00 3.32
4316 4682 6.603599 GGGTAATTTCCTCTTTGTTCAGCTAT 59.396 38.462 0.73 0.00 0.00 2.97
4317 4683 7.773690 GGGTAATTTCCTCTTTGTTCAGCTATA 59.226 37.037 0.73 0.00 0.00 1.31
4318 4684 8.613482 GGTAATTTCCTCTTTGTTCAGCTATAC 58.387 37.037 0.00 0.00 0.00 1.47
4319 4685 9.384764 GTAATTTCCTCTTTGTTCAGCTATACT 57.615 33.333 0.00 0.00 0.00 2.12
4328 4694 7.976175 TCTTTGTTCAGCTATACTGTATCAGTG 59.024 37.037 11.92 0.86 45.01 3.66
4329 4695 7.404671 TTGTTCAGCTATACTGTATCAGTGA 57.595 36.000 11.92 0.00 45.01 3.41
4330 4696 6.796426 TGTTCAGCTATACTGTATCAGTGAC 58.204 40.000 11.92 0.00 45.01 3.67
4331 4697 6.377146 TGTTCAGCTATACTGTATCAGTGACA 59.623 38.462 11.92 1.98 45.01 3.58
4332 4698 6.625873 TCAGCTATACTGTATCAGTGACAG 57.374 41.667 11.92 9.77 45.01 3.51
4333 4699 5.009110 TCAGCTATACTGTATCAGTGACAGC 59.991 44.000 10.98 14.79 46.85 4.40
4334 4700 4.889995 AGCTATACTGTATCAGTGACAGCA 59.110 41.667 21.70 0.38 46.85 4.41
4335 4701 5.360999 AGCTATACTGTATCAGTGACAGCAA 59.639 40.000 21.70 2.09 46.85 3.91
4558 4924 0.846693 AGGACCTTGCACTCCTTGTT 59.153 50.000 1.53 0.00 32.53 2.83
4663 5052 7.952637 GCTATTTCGTTTTCAGAGTTACAAGAG 59.047 37.037 0.00 0.00 0.00 2.85
4698 5087 2.802247 CACTGAAGAGTTCATTGACGCA 59.198 45.455 1.79 0.00 41.32 5.24
4738 5127 4.592485 TCAAGACTGTGAAAGACCTCTC 57.408 45.455 0.00 0.00 0.00 3.20
4741 5130 2.158234 AGACTGTGAAAGACCTCTCCCT 60.158 50.000 0.00 0.00 0.00 4.20
4845 5234 2.543848 CAGAACGAGCTTTTACTGCACA 59.456 45.455 0.00 0.00 0.00 4.57
4865 5254 7.031975 TGCACAATCGCATATTATTGTCAAAA 58.968 30.769 0.00 0.00 42.83 2.44
4872 5261 8.645730 TCGCATATTATTGTCAAAAATGCAAT 57.354 26.923 17.56 0.00 38.47 3.56
4897 5286 7.087007 TCGATTCTGTAGATGCTGATGTTATC 58.913 38.462 0.00 0.00 0.00 1.75
4932 5321 7.095607 GCTCACAATAAAGGACATATAGAACCG 60.096 40.741 0.00 0.00 0.00 4.44
4939 5328 9.939802 ATAAAGGACATATAGAACCGTTATTCC 57.060 33.333 0.00 0.00 35.02 3.01
4995 5384 6.154021 AGCTTTTACATTTGAATGGAGATGCT 59.846 34.615 11.67 11.67 38.91 3.79
5033 5422 1.044611 TTTGCTTGGTAGTTTGCCCC 58.955 50.000 0.00 0.00 0.00 5.80
5072 5462 7.497773 AGGAAAAATCCTGCTACTTACTAGT 57.502 36.000 0.00 0.00 38.98 2.57
5073 5463 8.605325 AGGAAAAATCCTGCTACTTACTAGTA 57.395 34.615 0.00 0.00 38.98 1.82
5074 5464 8.697292 AGGAAAAATCCTGCTACTTACTAGTAG 58.303 37.037 2.23 7.75 43.12 2.57
5136 5526 6.474102 GTCGAGTTTGAAACCAATTTTGCTAA 59.526 34.615 4.14 0.00 0.00 3.09
5137 5527 6.695278 TCGAGTTTGAAACCAATTTTGCTAAG 59.305 34.615 4.14 0.00 0.00 2.18
5138 5528 6.475402 CGAGTTTGAAACCAATTTTGCTAAGT 59.525 34.615 4.14 0.00 0.00 2.24
5139 5529 7.305993 CGAGTTTGAAACCAATTTTGCTAAGTC 60.306 37.037 4.14 0.00 0.00 3.01
5140 5530 7.555965 AGTTTGAAACCAATTTTGCTAAGTCT 58.444 30.769 4.14 0.00 0.00 3.24
5141 5531 7.706607 AGTTTGAAACCAATTTTGCTAAGTCTC 59.293 33.333 4.14 0.00 0.00 3.36
5142 5532 6.707440 TGAAACCAATTTTGCTAAGTCTCA 57.293 33.333 0.00 0.00 0.00 3.27
5143 5533 7.106439 TGAAACCAATTTTGCTAAGTCTCAA 57.894 32.000 0.00 0.00 0.00 3.02
5145 5535 8.203485 TGAAACCAATTTTGCTAAGTCTCAATT 58.797 29.630 0.00 0.00 0.00 2.32
5146 5536 7.951530 AACCAATTTTGCTAAGTCTCAATTG 57.048 32.000 0.00 0.00 33.34 2.32
5147 5537 7.288810 ACCAATTTTGCTAAGTCTCAATTGA 57.711 32.000 8.12 8.12 34.80 2.57
5148 5538 7.373493 ACCAATTTTGCTAAGTCTCAATTGAG 58.627 34.615 26.56 26.56 43.36 3.02
5179 5569 7.981789 TGACTTTTCTCAGTCGATGCTATATTT 59.018 33.333 0.00 0.00 45.53 1.40
5193 5583 7.112565 CGATGCTATATTTGTTTGATCTTGTGC 59.887 37.037 0.00 0.00 0.00 4.57
5196 5586 8.252417 TGCTATATTTGTTTGATCTTGTGCATT 58.748 29.630 0.00 0.00 0.00 3.56
5244 5634 5.867903 TTTTATATGGGGAATGCCTGTTG 57.132 39.130 0.00 0.00 0.00 3.33
5245 5635 2.386829 ATATGGGGAATGCCTGTTGG 57.613 50.000 0.00 0.00 0.00 3.77
5246 5636 1.006813 TATGGGGAATGCCTGTTGGT 58.993 50.000 0.00 0.00 35.27 3.67
5247 5637 0.116940 ATGGGGAATGCCTGTTGGTT 59.883 50.000 0.00 0.00 35.27 3.67
5248 5638 0.541764 TGGGGAATGCCTGTTGGTTC 60.542 55.000 0.00 0.00 35.27 3.62
5249 5639 1.257750 GGGGAATGCCTGTTGGTTCC 61.258 60.000 0.00 0.00 37.62 3.62
5250 5640 0.251787 GGGAATGCCTGTTGGTTCCT 60.252 55.000 0.00 0.00 38.12 3.36
5251 5641 0.890683 GGAATGCCTGTTGGTTCCTG 59.109 55.000 0.00 0.00 36.26 3.86
5252 5642 0.890683 GAATGCCTGTTGGTTCCTGG 59.109 55.000 0.00 0.00 35.27 4.45
5253 5643 0.542702 AATGCCTGTTGGTTCCTGGG 60.543 55.000 0.00 0.00 35.27 4.45
5254 5644 2.283173 GCCTGTTGGTTCCTGGGG 60.283 66.667 0.00 0.00 35.27 4.96
5255 5645 2.840753 GCCTGTTGGTTCCTGGGGA 61.841 63.158 0.00 0.00 35.27 4.81
5256 5646 1.074951 CCTGTTGGTTCCTGGGGAC 59.925 63.158 0.00 0.00 0.00 4.46
5257 5647 1.715019 CCTGTTGGTTCCTGGGGACA 61.715 60.000 0.08 0.00 39.59 4.02
5258 5648 0.405585 CTGTTGGTTCCTGGGGACAT 59.594 55.000 0.08 0.00 41.51 3.06
5259 5649 0.404040 TGTTGGTTCCTGGGGACATC 59.596 55.000 0.08 0.00 41.51 3.06
5260 5650 0.698818 GTTGGTTCCTGGGGACATCT 59.301 55.000 0.08 0.00 41.51 2.90
5261 5651 0.698238 TTGGTTCCTGGGGACATCTG 59.302 55.000 0.08 0.00 41.51 2.90
5262 5652 0.475632 TGGTTCCTGGGGACATCTGT 60.476 55.000 0.08 0.00 41.51 3.41
5263 5653 0.253327 GGTTCCTGGGGACATCTGTC 59.747 60.000 1.59 1.59 44.04 3.51
5275 5665 4.478206 GACATCTGTCCCTTGAATCTCA 57.522 45.455 0.00 0.00 39.07 3.27
5276 5666 4.187694 GACATCTGTCCCTTGAATCTCAC 58.812 47.826 0.00 0.00 39.07 3.51
5277 5667 3.054802 ACATCTGTCCCTTGAATCTCACC 60.055 47.826 0.00 0.00 0.00 4.02
5278 5668 2.619931 TCTGTCCCTTGAATCTCACCA 58.380 47.619 0.00 0.00 0.00 4.17
5279 5669 3.184628 TCTGTCCCTTGAATCTCACCAT 58.815 45.455 0.00 0.00 0.00 3.55
5280 5670 3.588842 TCTGTCCCTTGAATCTCACCATT 59.411 43.478 0.00 0.00 0.00 3.16
5281 5671 3.944015 CTGTCCCTTGAATCTCACCATTC 59.056 47.826 0.00 0.00 33.90 2.67
5282 5672 3.330405 TGTCCCTTGAATCTCACCATTCA 59.670 43.478 0.00 0.00 40.36 2.57
5283 5673 4.018141 TGTCCCTTGAATCTCACCATTCAT 60.018 41.667 0.00 0.00 41.42 2.57
5284 5674 4.952335 GTCCCTTGAATCTCACCATTCATT 59.048 41.667 0.00 0.00 41.42 2.57
5285 5675 6.122277 GTCCCTTGAATCTCACCATTCATTA 58.878 40.000 0.00 0.00 41.42 1.90
5286 5676 6.038714 GTCCCTTGAATCTCACCATTCATTAC 59.961 42.308 0.00 0.00 41.42 1.89
5287 5677 6.069440 TCCCTTGAATCTCACCATTCATTACT 60.069 38.462 0.00 0.00 41.42 2.24
5288 5678 6.261826 CCCTTGAATCTCACCATTCATTACTC 59.738 42.308 0.00 0.00 41.42 2.59
5289 5679 7.052873 CCTTGAATCTCACCATTCATTACTCT 58.947 38.462 0.00 0.00 41.42 3.24
5290 5680 7.226325 CCTTGAATCTCACCATTCATTACTCTC 59.774 40.741 0.00 0.00 41.42 3.20
5291 5681 6.586344 TGAATCTCACCATTCATTACTCTCC 58.414 40.000 0.00 0.00 37.77 3.71
5292 5682 5.559148 ATCTCACCATTCATTACTCTCCC 57.441 43.478 0.00 0.00 0.00 4.30
5293 5683 3.384789 TCTCACCATTCATTACTCTCCCG 59.615 47.826 0.00 0.00 0.00 5.14
5294 5684 3.371034 TCACCATTCATTACTCTCCCGA 58.629 45.455 0.00 0.00 0.00 5.14
5295 5685 3.132289 TCACCATTCATTACTCTCCCGAC 59.868 47.826 0.00 0.00 0.00 4.79
5296 5686 2.434702 ACCATTCATTACTCTCCCGACC 59.565 50.000 0.00 0.00 0.00 4.79
5297 5687 2.224305 CCATTCATTACTCTCCCGACCC 60.224 54.545 0.00 0.00 0.00 4.46
5298 5688 1.492764 TTCATTACTCTCCCGACCCC 58.507 55.000 0.00 0.00 0.00 4.95
5299 5689 0.398098 TCATTACTCTCCCGACCCCC 60.398 60.000 0.00 0.00 0.00 5.40
5330 5720 4.713792 CCCCCTCTGCTATCAGTATTTT 57.286 45.455 0.00 0.00 41.10 1.82
5331 5721 4.392940 CCCCCTCTGCTATCAGTATTTTG 58.607 47.826 0.00 0.00 41.10 2.44
5332 5722 4.103153 CCCCCTCTGCTATCAGTATTTTGA 59.897 45.833 0.00 0.00 41.10 2.69
5333 5723 5.303971 CCCCTCTGCTATCAGTATTTTGAG 58.696 45.833 0.00 0.00 41.10 3.02
5334 5724 5.303971 CCCTCTGCTATCAGTATTTTGAGG 58.696 45.833 0.00 0.00 41.10 3.86
5335 5725 5.070981 CCCTCTGCTATCAGTATTTTGAGGA 59.929 44.000 0.00 0.00 41.10 3.71
5336 5726 5.988561 CCTCTGCTATCAGTATTTTGAGGAC 59.011 44.000 0.00 0.00 41.10 3.85
5337 5727 5.592054 TCTGCTATCAGTATTTTGAGGACG 58.408 41.667 0.00 0.00 41.10 4.79
5338 5728 5.359860 TCTGCTATCAGTATTTTGAGGACGA 59.640 40.000 0.00 0.00 41.10 4.20
5339 5729 5.972935 TGCTATCAGTATTTTGAGGACGAA 58.027 37.500 0.00 0.00 0.00 3.85
5340 5730 6.403049 TGCTATCAGTATTTTGAGGACGAAA 58.597 36.000 0.00 0.00 34.43 3.46
5341 5731 7.047891 TGCTATCAGTATTTTGAGGACGAAAT 58.952 34.615 0.00 0.00 41.37 2.17
5342 5732 7.224753 TGCTATCAGTATTTTGAGGACGAAATC 59.775 37.037 0.00 0.00 39.77 2.17
5343 5733 7.224753 GCTATCAGTATTTTGAGGACGAAATCA 59.775 37.037 0.00 0.00 39.77 2.57
5344 5734 6.721571 TCAGTATTTTGAGGACGAAATCAC 57.278 37.500 0.00 0.00 39.77 3.06
5345 5735 6.464222 TCAGTATTTTGAGGACGAAATCACT 58.536 36.000 0.00 0.00 39.77 3.41
5346 5736 6.368791 TCAGTATTTTGAGGACGAAATCACTG 59.631 38.462 4.44 4.44 39.77 3.66
5669 6059 9.950680 AACATTTATAGTCACAAACTGAACTTG 57.049 29.630 0.00 0.00 39.11 3.16
5670 6060 9.337396 ACATTTATAGTCACAAACTGAACTTGA 57.663 29.630 0.00 0.00 39.11 3.02
5671 6061 9.599322 CATTTATAGTCACAAACTGAACTTGAC 57.401 33.333 0.00 0.00 39.11 3.18
5672 6062 5.907197 ATAGTCACAAACTGAACTTGACG 57.093 39.130 0.00 0.00 41.23 4.35
5673 6063 3.596214 AGTCACAAACTGAACTTGACGT 58.404 40.909 0.00 0.00 41.23 4.34
5674 6064 3.370978 AGTCACAAACTGAACTTGACGTG 59.629 43.478 0.00 0.00 41.23 4.49
5675 6065 3.369756 GTCACAAACTGAACTTGACGTGA 59.630 43.478 0.00 0.00 0.00 4.35
5676 6066 3.997681 TCACAAACTGAACTTGACGTGAA 59.002 39.130 0.00 0.00 0.00 3.18
5677 6067 4.452795 TCACAAACTGAACTTGACGTGAAA 59.547 37.500 0.00 0.00 0.00 2.69
5678 6068 4.788100 CACAAACTGAACTTGACGTGAAAG 59.212 41.667 0.00 0.00 0.00 2.62
5679 6069 4.454504 ACAAACTGAACTTGACGTGAAAGT 59.545 37.500 7.29 7.29 39.55 2.66
5680 6070 5.640357 ACAAACTGAACTTGACGTGAAAGTA 59.360 36.000 12.33 0.00 36.87 2.24
5681 6071 6.315393 ACAAACTGAACTTGACGTGAAAGTAT 59.685 34.615 12.33 4.98 36.87 2.12
5682 6072 6.920569 AACTGAACTTGACGTGAAAGTATT 57.079 33.333 12.33 0.36 36.87 1.89
5683 6073 6.526566 ACTGAACTTGACGTGAAAGTATTC 57.473 37.500 12.33 8.76 36.87 1.75
5684 6074 6.281405 ACTGAACTTGACGTGAAAGTATTCT 58.719 36.000 12.33 0.00 36.87 2.40
5685 6075 6.201044 ACTGAACTTGACGTGAAAGTATTCTG 59.799 38.462 12.33 12.58 36.87 3.02
5686 6076 6.046593 TGAACTTGACGTGAAAGTATTCTGT 58.953 36.000 12.33 0.00 36.87 3.41
5687 6077 5.907197 ACTTGACGTGAAAGTATTCTGTG 57.093 39.130 10.69 0.00 36.11 3.66
5688 6078 5.597806 ACTTGACGTGAAAGTATTCTGTGA 58.402 37.500 10.69 0.00 36.11 3.58
5689 6079 6.223852 ACTTGACGTGAAAGTATTCTGTGAT 58.776 36.000 10.69 0.00 36.11 3.06
5690 6080 6.706270 ACTTGACGTGAAAGTATTCTGTGATT 59.294 34.615 10.69 0.00 36.11 2.57
5691 6081 7.226720 ACTTGACGTGAAAGTATTCTGTGATTT 59.773 33.333 10.69 0.00 36.11 2.17
5692 6082 6.887368 TGACGTGAAAGTATTCTGTGATTTG 58.113 36.000 0.00 0.00 36.48 2.32
5693 6083 6.704050 TGACGTGAAAGTATTCTGTGATTTGA 59.296 34.615 0.00 0.00 36.48 2.69
5694 6084 6.888430 ACGTGAAAGTATTCTGTGATTTGAC 58.112 36.000 0.00 0.00 36.48 3.18
5695 6085 6.073222 ACGTGAAAGTATTCTGTGATTTGACC 60.073 38.462 0.00 0.00 36.48 4.02
5696 6086 6.612306 GTGAAAGTATTCTGTGATTTGACCC 58.388 40.000 0.00 0.00 36.48 4.46
5697 6087 6.431234 GTGAAAGTATTCTGTGATTTGACCCT 59.569 38.462 0.00 0.00 36.48 4.34
5698 6088 7.004086 TGAAAGTATTCTGTGATTTGACCCTT 58.996 34.615 0.00 0.00 36.48 3.95
5699 6089 7.505585 TGAAAGTATTCTGTGATTTGACCCTTT 59.494 33.333 0.00 0.00 36.48 3.11
5700 6090 7.839680 AAGTATTCTGTGATTTGACCCTTTT 57.160 32.000 0.00 0.00 0.00 2.27
5701 6091 8.934023 AAGTATTCTGTGATTTGACCCTTTTA 57.066 30.769 0.00 0.00 0.00 1.52
5702 6092 8.567285 AGTATTCTGTGATTTGACCCTTTTAG 57.433 34.615 0.00 0.00 0.00 1.85
5703 6093 8.383175 AGTATTCTGTGATTTGACCCTTTTAGA 58.617 33.333 0.00 0.00 0.00 2.10
5704 6094 9.010029 GTATTCTGTGATTTGACCCTTTTAGAA 57.990 33.333 0.00 0.00 0.00 2.10
5705 6095 7.889873 TTCTGTGATTTGACCCTTTTAGAAA 57.110 32.000 0.00 0.00 0.00 2.52
5706 6096 7.272037 TCTGTGATTTGACCCTTTTAGAAAC 57.728 36.000 0.00 0.00 0.00 2.78
5707 6097 6.017440 TCTGTGATTTGACCCTTTTAGAAACG 60.017 38.462 0.00 0.00 0.00 3.60
5708 6098 4.915667 GTGATTTGACCCTTTTAGAAACGC 59.084 41.667 0.00 0.00 0.00 4.84
5709 6099 3.994204 TTTGACCCTTTTAGAAACGCC 57.006 42.857 0.00 0.00 0.00 5.68
5710 6100 2.642154 TGACCCTTTTAGAAACGCCA 57.358 45.000 0.00 0.00 0.00 5.69
5711 6101 2.500229 TGACCCTTTTAGAAACGCCAG 58.500 47.619 0.00 0.00 0.00 4.85
5712 6102 2.105134 TGACCCTTTTAGAAACGCCAGA 59.895 45.455 0.00 0.00 0.00 3.86
5713 6103 2.742589 GACCCTTTTAGAAACGCCAGAG 59.257 50.000 0.00 0.00 0.00 3.35
5714 6104 1.468914 CCCTTTTAGAAACGCCAGAGC 59.531 52.381 0.00 0.00 0.00 4.09
5715 6105 1.468914 CCTTTTAGAAACGCCAGAGCC 59.531 52.381 0.00 0.00 34.57 4.70
5716 6106 1.468914 CTTTTAGAAACGCCAGAGCCC 59.531 52.381 0.00 0.00 34.57 5.19
5717 6107 0.672401 TTTAGAAACGCCAGAGCCCG 60.672 55.000 0.00 0.00 34.57 6.13
5718 6108 1.823169 TTAGAAACGCCAGAGCCCGT 61.823 55.000 0.00 0.00 39.70 5.28
5719 6109 2.501223 TAGAAACGCCAGAGCCCGTG 62.501 60.000 0.00 0.00 37.79 4.94
5720 6110 3.876589 GAAACGCCAGAGCCCGTGA 62.877 63.158 0.00 0.00 37.79 4.35
5721 6111 4.681978 AACGCCAGAGCCCGTGAC 62.682 66.667 0.00 0.00 37.79 3.67
5724 6114 4.681978 GCCAGAGCCCGTGACGTT 62.682 66.667 3.64 0.00 0.00 3.99
5725 6115 2.030562 CCAGAGCCCGTGACGTTT 59.969 61.111 3.64 0.00 0.00 3.60
5726 6116 2.027625 CCAGAGCCCGTGACGTTTC 61.028 63.158 3.64 0.00 0.00 2.78
5727 6117 2.027625 CAGAGCCCGTGACGTTTCC 61.028 63.158 3.64 0.00 0.00 3.13
5728 6118 2.029964 GAGCCCGTGACGTTTCCA 59.970 61.111 3.64 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.693591 GAGAACGACACCTATGGGATCA 59.306 50.000 0.25 0.00 36.25 2.92
1 2 2.693591 TGAGAACGACACCTATGGGATC 59.306 50.000 0.25 0.00 36.25 3.36
2 3 2.431057 GTGAGAACGACACCTATGGGAT 59.569 50.000 0.25 0.00 36.25 3.85
3 4 1.822990 GTGAGAACGACACCTATGGGA 59.177 52.381 0.25 0.00 36.25 4.37
4 5 2.295253 GTGAGAACGACACCTATGGG 57.705 55.000 0.00 0.00 38.88 4.00
14 15 1.664874 CGATGTTGTCGGTGAGAACGA 60.665 52.381 0.00 0.00 46.47 3.85
15 16 0.708370 CGATGTTGTCGGTGAGAACG 59.292 55.000 2.93 0.00 46.47 3.95
58 59 0.038159 CTGGACGGTCTGGACAGAAC 60.038 60.000 7.30 7.30 41.64 3.01
63 64 2.048127 GTGCTGGACGGTCTGGAC 60.048 66.667 8.23 8.96 0.00 4.02
71 72 0.320374 TCTTAGTTGGGTGCTGGACG 59.680 55.000 0.00 0.00 0.00 4.79
118 119 3.869246 GTGTTTCCTTCTTGACAACGAGA 59.131 43.478 0.00 0.00 35.02 4.04
121 122 4.094294 TGAAGTGTTTCCTTCTTGACAACG 59.906 41.667 0.00 0.00 41.17 4.10
127 128 5.586243 TCTGAACTGAAGTGTTTCCTTCTTG 59.414 40.000 0.00 0.00 41.17 3.02
191 240 5.530519 TGCAGAGTCGATGAAACAATAAC 57.469 39.130 0.00 0.00 0.00 1.89
193 242 5.294306 GGATTGCAGAGTCGATGAAACAATA 59.706 40.000 0.00 0.00 0.00 1.90
194 243 4.095483 GGATTGCAGAGTCGATGAAACAAT 59.905 41.667 5.86 5.86 0.00 2.71
195 244 3.436704 GGATTGCAGAGTCGATGAAACAA 59.563 43.478 0.00 0.00 0.00 2.83
196 245 3.002791 GGATTGCAGAGTCGATGAAACA 58.997 45.455 0.00 0.00 0.00 2.83
197 246 3.265791 AGGATTGCAGAGTCGATGAAAC 58.734 45.455 0.00 0.00 0.00 2.78
198 247 3.525537 GAGGATTGCAGAGTCGATGAAA 58.474 45.455 0.00 0.00 0.00 2.69
199 248 2.480244 CGAGGATTGCAGAGTCGATGAA 60.480 50.000 4.38 0.00 32.32 2.57
200 249 1.066152 CGAGGATTGCAGAGTCGATGA 59.934 52.381 4.38 0.00 32.32 2.92
201 250 1.485397 CGAGGATTGCAGAGTCGATG 58.515 55.000 4.38 0.00 32.32 3.84
202 251 3.955291 CGAGGATTGCAGAGTCGAT 57.045 52.632 4.38 0.00 32.32 3.59
237 295 2.620115 TGTCGTTCGGTTCTACAGAAGT 59.380 45.455 0.00 0.00 33.20 3.01
244 302 0.604073 TGCCATGTCGTTCGGTTCTA 59.396 50.000 0.00 0.00 0.00 2.10
248 306 0.816018 TTTGTGCCATGTCGTTCGGT 60.816 50.000 0.00 0.00 0.00 4.69
275 333 9.927081 AGTTTGTAATTTCTGATGGAGGATTAT 57.073 29.630 0.00 0.00 0.00 1.28
279 337 9.231297 CTAAAGTTTGTAATTTCTGATGGAGGA 57.769 33.333 0.00 0.00 0.00 3.71
285 343 6.625081 GCCGCCTAAAGTTTGTAATTTCTGAT 60.625 38.462 0.00 0.00 0.00 2.90
355 413 0.545171 AGAGTGCATCCACCTCCATG 59.455 55.000 0.00 0.00 43.09 3.66
376 434 9.170584 GCTTTATTACAGTTGAAGAGACAAAAC 57.829 33.333 0.00 0.00 0.00 2.43
394 452 6.110033 TCGGTCTGCATACAAAGCTTTATTA 58.890 36.000 12.25 6.77 0.00 0.98
399 457 2.472695 TCGGTCTGCATACAAAGCTT 57.527 45.000 4.48 0.00 0.00 3.74
433 491 6.044287 TCTGGGCCTAGAAGCATGATAAATTA 59.956 38.462 17.75 0.00 0.00 1.40
482 540 8.047310 TGATACAGAGGCGATATATAGAGTTCA 58.953 37.037 0.00 0.00 0.00 3.18
483 541 8.439993 TGATACAGAGGCGATATATAGAGTTC 57.560 38.462 0.00 0.00 0.00 3.01
491 549 4.017126 CCACCTGATACAGAGGCGATATA 58.983 47.826 0.00 0.00 33.39 0.86
583 707 5.105513 ACATTGTGTGCATGATGATGTCAAT 60.106 36.000 0.00 0.00 40.97 2.57
612 736 6.699204 ACATTGTGTGCATGATCGTTTAAAAA 59.301 30.769 0.00 0.00 0.00 1.94
613 737 6.212235 ACATTGTGTGCATGATCGTTTAAAA 58.788 32.000 0.00 0.00 0.00 1.52
614 738 5.767269 ACATTGTGTGCATGATCGTTTAAA 58.233 33.333 0.00 0.00 0.00 1.52
615 739 5.369685 ACATTGTGTGCATGATCGTTTAA 57.630 34.783 0.00 0.00 0.00 1.52
616 740 5.152804 CAACATTGTGTGCATGATCGTTTA 58.847 37.500 0.00 0.00 0.00 2.01
617 741 3.921119 ACATTGTGTGCATGATCGTTT 57.079 38.095 0.00 0.00 0.00 3.60
618 742 3.004629 ACAACATTGTGTGCATGATCGTT 59.995 39.130 0.00 0.00 40.49 3.85
619 743 2.553602 ACAACATTGTGTGCATGATCGT 59.446 40.909 0.00 0.00 40.49 3.73
620 744 3.206034 ACAACATTGTGTGCATGATCG 57.794 42.857 0.00 0.00 40.49 3.69
708 832 2.368875 GTGAAGAGACTTTGGGACCTCA 59.631 50.000 0.00 0.00 0.00 3.86
723 847 2.359850 GGTGCATGCGGGTGAAGA 60.360 61.111 14.09 0.00 0.00 2.87
725 849 2.035469 ATGGTGCATGCGGGTGAA 59.965 55.556 14.09 0.00 0.00 3.18
726 850 2.438254 GATGGTGCATGCGGGTGA 60.438 61.111 14.09 0.00 0.00 4.02
735 859 3.135348 TGTTTTGGAATTTGGATGGTGCA 59.865 39.130 0.00 0.00 0.00 4.57
748 872 0.563173 TGGGATGGGGTGTTTTGGAA 59.437 50.000 0.00 0.00 0.00 3.53
752 876 0.565674 AGGTTGGGATGGGGTGTTTT 59.434 50.000 0.00 0.00 0.00 2.43
763 887 4.373116 GACTGCGCGAGGTTGGGA 62.373 66.667 12.10 0.00 0.00 4.37
767 891 1.153745 GATCAGACTGCGCGAGGTT 60.154 57.895 12.10 0.00 0.00 3.50
769 893 2.279120 GGATCAGACTGCGCGAGG 60.279 66.667 12.10 3.23 0.00 4.63
771 895 2.393989 GATCGGATCAGACTGCGCGA 62.394 60.000 12.10 0.00 0.00 5.87
821 948 7.444487 GTCTGCGGTAGGGATATTTTAGAAAAT 59.556 37.037 5.61 5.61 41.24 1.82
897 1025 0.454196 GGAGAGAGAACGGAGTGAGC 59.546 60.000 0.00 0.00 45.00 4.26
914 1042 3.948719 GTGGTGGCACGGGAAGGA 61.949 66.667 12.17 0.00 0.00 3.36
1024 1159 0.976073 ATCTCGACGATGGGGTTGGT 60.976 55.000 0.00 0.00 0.00 3.67
1062 1197 1.229209 GGAGTGGGAGTGGAGTGGA 60.229 63.158 0.00 0.00 0.00 4.02
1066 1201 3.077556 CGGGGAGTGGGAGTGGAG 61.078 72.222 0.00 0.00 0.00 3.86
1067 1202 4.715130 CCGGGGAGTGGGAGTGGA 62.715 72.222 0.00 0.00 0.00 4.02
1125 1267 6.348458 CGACCAGAATACAAAATTCAGCAAGA 60.348 38.462 1.01 0.00 0.00 3.02
1161 1304 5.509498 GGCTATACATCTCTCAGATCTCCT 58.491 45.833 0.00 0.00 31.32 3.69
1170 1313 3.499157 AGAACGACGGCTATACATCTCTC 59.501 47.826 0.00 0.00 0.00 3.20
1171 1314 3.251245 CAGAACGACGGCTATACATCTCT 59.749 47.826 0.00 0.00 0.00 3.10
1176 1319 0.101759 GGCAGAACGACGGCTATACA 59.898 55.000 0.00 0.00 39.51 2.29
1177 1320 0.596859 GGGCAGAACGACGGCTATAC 60.597 60.000 0.00 0.00 39.51 1.47
1179 1322 2.499685 GGGCAGAACGACGGCTAT 59.500 61.111 0.00 0.00 39.51 2.97
1207 1350 6.884295 CCTGAACCCAACAGTTAAGATATTGA 59.116 38.462 0.00 0.00 30.64 2.57
1210 1353 6.180472 CACCTGAACCCAACAGTTAAGATAT 58.820 40.000 0.00 0.00 30.64 1.63
1211 1354 5.072600 ACACCTGAACCCAACAGTTAAGATA 59.927 40.000 0.00 0.00 30.64 1.98
1227 1370 3.500343 TCAGACATCAGAGACACCTGAA 58.500 45.455 0.00 0.00 45.22 3.02
1243 1386 7.390996 TCCAAGTACGGAGATAATAGATCAGAC 59.609 40.741 0.00 0.00 0.00 3.51
1244 1387 7.459234 TCCAAGTACGGAGATAATAGATCAGA 58.541 38.462 0.00 0.00 0.00 3.27
1245 1388 7.689446 TCCAAGTACGGAGATAATAGATCAG 57.311 40.000 0.00 0.00 0.00 2.90
1246 1389 7.065923 CGATCCAAGTACGGAGATAATAGATCA 59.934 40.741 0.00 0.00 38.83 2.92
1247 1390 7.411274 CGATCCAAGTACGGAGATAATAGATC 58.589 42.308 0.00 0.00 38.83 2.75
1248 1391 6.183360 GCGATCCAAGTACGGAGATAATAGAT 60.183 42.308 0.00 0.00 38.83 1.98
1249 1392 5.123502 GCGATCCAAGTACGGAGATAATAGA 59.876 44.000 0.00 0.00 38.83 1.98
1250 1393 5.333513 GCGATCCAAGTACGGAGATAATAG 58.666 45.833 0.00 0.00 38.83 1.73
1251 1394 4.157289 GGCGATCCAAGTACGGAGATAATA 59.843 45.833 0.00 0.00 38.83 0.98
1252 1395 3.056749 GGCGATCCAAGTACGGAGATAAT 60.057 47.826 0.00 0.00 38.83 1.28
1253 1396 2.295349 GGCGATCCAAGTACGGAGATAA 59.705 50.000 0.00 0.00 38.83 1.75
1286 1429 5.686159 TCTACGTTCTAAATCCGATCTCC 57.314 43.478 0.00 0.00 0.00 3.71
1320 1463 2.421073 CCAAGGTGTCATACATGTGCAG 59.579 50.000 9.11 0.00 0.00 4.41
1329 1472 3.131577 GTGATCGTACCCAAGGTGTCATA 59.868 47.826 0.00 0.00 36.19 2.15
1360 1503 1.197721 CTGCACCTTCCGATTGTCAAC 59.802 52.381 0.00 0.00 0.00 3.18
1367 1510 1.002134 CAACCCTGCACCTTCCGAT 60.002 57.895 0.00 0.00 0.00 4.18
1369 1512 2.672996 CCAACCCTGCACCTTCCG 60.673 66.667 0.00 0.00 0.00 4.30
1394 1537 2.483714 CCAGCAGTTATACGTCAGGCAT 60.484 50.000 0.00 0.00 0.00 4.40
1411 1571 4.187694 AGATTTCAGAAACGAGATCCAGC 58.812 43.478 0.00 0.00 28.96 4.85
1458 1626 2.546321 GCGCCAGCAATCGTATCG 59.454 61.111 0.00 0.00 44.35 2.92
1471 1639 2.791927 GATTGGACCGAAAGCGCC 59.208 61.111 2.29 0.00 35.83 6.53
1543 1714 6.633500 AAGTTCGACATCATTTTCTTTCCA 57.367 33.333 0.00 0.00 0.00 3.53
1680 1851 6.809196 GTCATCTCATCGCCTATAGGTTAAAG 59.191 42.308 20.10 11.23 37.57 1.85
1785 1956 3.848272 AAACAAGAACCACACACACAG 57.152 42.857 0.00 0.00 0.00 3.66
1828 2000 7.233348 TGGGAAGATAAGCTGAAACAAAGAAAT 59.767 33.333 0.00 0.00 0.00 2.17
1831 2003 5.630121 TGGGAAGATAAGCTGAAACAAAGA 58.370 37.500 0.00 0.00 0.00 2.52
1832 2004 5.964958 TGGGAAGATAAGCTGAAACAAAG 57.035 39.130 0.00 0.00 0.00 2.77
1972 2144 4.634883 AGCATAACATCAGCAGAAACTCAG 59.365 41.667 0.00 0.00 0.00 3.35
1980 2152 4.083164 TGAACACAAGCATAACATCAGCAG 60.083 41.667 0.00 0.00 0.00 4.24
1998 2170 9.409312 CACAGCAATCATATTTTTACTTGAACA 57.591 29.630 0.00 0.00 0.00 3.18
2036 2208 8.446599 AATTATAGGCTACATAAAACGCTTGT 57.553 30.769 0.00 0.00 0.00 3.16
2099 2271 7.394923 ACTCAAAATTCGTTGGGAAATATACCA 59.605 33.333 0.00 0.00 38.36 3.25
2112 2284 7.972832 TCAACCATAGTACTCAAAATTCGTT 57.027 32.000 0.00 0.00 0.00 3.85
2167 2339 4.777896 AGTAGTGAAAAGGTATCTGCCTCA 59.222 41.667 0.00 0.00 38.03 3.86
2172 2344 7.872993 TCAACAAGAGTAGTGAAAAGGTATCTG 59.127 37.037 0.00 0.00 0.00 2.90
2317 2489 8.766994 ATAGCCACATTGTACCTGAAAATAAT 57.233 30.769 0.00 0.00 0.00 1.28
2624 2796 8.686334 ACAAGTGTAAAGAGAAATGTCAACAAT 58.314 29.630 0.00 0.00 0.00 2.71
2729 2901 2.584236 TGAATCGGAGGGAGTAGTAGC 58.416 52.381 0.00 0.00 0.00 3.58
2759 2931 4.142038 ACAAAGTTGTACTAAAGCAGGGG 58.858 43.478 0.00 0.00 40.16 4.79
2796 2969 7.442364 CACTCACTCCGATCCATATTATTTGTT 59.558 37.037 0.00 0.00 0.00 2.83
3017 3190 5.647658 TCATGCTTAATTGTAAGTGGAGTGG 59.352 40.000 0.00 0.00 39.23 4.00
3029 3202 9.635520 AAGACTTCATTCTTTCATGCTTAATTG 57.364 29.630 0.00 0.00 31.39 2.32
3037 3211 9.604626 GAACTACAAAGACTTCATTCTTTCATG 57.395 33.333 0.00 0.00 42.74 3.07
3095 3269 1.055849 TTGCTAGCACCAGTTCTCCA 58.944 50.000 19.17 0.00 0.00 3.86
3096 3270 1.807142 GTTTGCTAGCACCAGTTCTCC 59.193 52.381 19.17 0.00 0.00 3.71
3117 3291 7.386025 AGAAACAAAAAGGCAAAGAATATCAGC 59.614 33.333 0.00 0.00 0.00 4.26
3274 3448 9.810231 CTCCAAAATGCAAATATTGTTTGTAAC 57.190 29.630 7.57 0.00 0.00 2.50
3476 3821 5.540337 TGATCTAATTGTCTCGGAATAGGCT 59.460 40.000 0.00 0.00 0.00 4.58
3481 3826 4.346418 AGCCTGATCTAATTGTCTCGGAAT 59.654 41.667 0.00 0.00 0.00 3.01
3891 4237 2.151202 GACGTCATCAAGCCCAAAGAA 58.849 47.619 11.55 0.00 0.00 2.52
3978 4324 6.378848 ACCAAAGTAAAGGCTTTTCACACTAA 59.621 34.615 18.93 0.00 36.64 2.24
4232 4578 6.301486 TGCACCGGTAGAGATATAGAAGTAA 58.699 40.000 6.87 0.00 0.00 2.24
4314 4680 6.154534 AGGTTTGCTGTCACTGATACAGTATA 59.845 38.462 4.08 4.56 43.43 1.47
4315 4681 5.046304 AGGTTTGCTGTCACTGATACAGTAT 60.046 40.000 4.08 0.00 43.43 2.12
4316 4682 4.283467 AGGTTTGCTGTCACTGATACAGTA 59.717 41.667 4.08 7.92 43.43 2.74
4317 4683 3.071602 AGGTTTGCTGTCACTGATACAGT 59.928 43.478 13.02 0.00 46.51 3.55
4318 4684 3.668447 AGGTTTGCTGTCACTGATACAG 58.332 45.455 8.95 8.95 45.80 2.74
4319 4685 3.769739 AGGTTTGCTGTCACTGATACA 57.230 42.857 0.00 0.00 0.00 2.29
4320 4686 5.438761 AAAAGGTTTGCTGTCACTGATAC 57.561 39.130 0.00 0.00 0.00 2.24
4321 4687 5.827797 AGAAAAAGGTTTGCTGTCACTGATA 59.172 36.000 0.00 0.00 0.00 2.15
4322 4688 4.646492 AGAAAAAGGTTTGCTGTCACTGAT 59.354 37.500 0.00 0.00 0.00 2.90
4323 4689 4.016444 AGAAAAAGGTTTGCTGTCACTGA 58.984 39.130 0.00 0.00 0.00 3.41
4324 4690 4.107622 CAGAAAAAGGTTTGCTGTCACTG 58.892 43.478 1.14 0.00 0.00 3.66
4325 4691 3.131046 CCAGAAAAAGGTTTGCTGTCACT 59.869 43.478 7.72 0.00 0.00 3.41
4326 4692 3.119137 ACCAGAAAAAGGTTTGCTGTCAC 60.119 43.478 7.72 0.00 35.33 3.67
4327 4693 3.096092 ACCAGAAAAAGGTTTGCTGTCA 58.904 40.909 7.72 0.00 35.33 3.58
4328 4694 3.119137 ACACCAGAAAAAGGTTTGCTGTC 60.119 43.478 7.72 0.00 37.23 3.51
4329 4695 2.831526 ACACCAGAAAAAGGTTTGCTGT 59.168 40.909 7.72 0.00 37.23 4.40
4330 4696 3.119173 TCACACCAGAAAAAGGTTTGCTG 60.119 43.478 2.19 2.19 36.89 4.41
4331 4697 3.096092 TCACACCAGAAAAAGGTTTGCT 58.904 40.909 0.00 0.00 36.89 3.91
4332 4698 3.186909 GTCACACCAGAAAAAGGTTTGC 58.813 45.455 0.00 0.00 36.89 3.68
4333 4699 3.194542 TGGTCACACCAGAAAAAGGTTTG 59.805 43.478 0.00 0.00 44.79 2.93
4334 4700 3.436243 TGGTCACACCAGAAAAAGGTTT 58.564 40.909 0.00 0.00 44.79 3.27
4335 4701 3.094484 TGGTCACACCAGAAAAAGGTT 57.906 42.857 0.00 0.00 44.79 3.50
4558 4924 6.712095 GCATAACATACTTTGAGGATCCATGA 59.288 38.462 15.82 0.00 0.00 3.07
4640 5029 6.293462 GCCTCTTGTAACTCTGAAAACGAAAT 60.293 38.462 0.00 0.00 0.00 2.17
4663 5052 2.380084 TCAGTGTTCAGGTAATCGCC 57.620 50.000 0.00 0.00 0.00 5.54
4845 5234 8.645730 TGCATTTTTGACAATAATATGCGATT 57.354 26.923 14.29 0.00 35.50 3.34
4865 5254 5.049612 CAGCATCTACAGAATCGATTGCATT 60.050 40.000 16.96 0.00 0.00 3.56
4872 5261 4.926140 ACATCAGCATCTACAGAATCGA 57.074 40.909 0.00 0.00 0.00 3.59
4897 5286 3.947834 CCTTTATTGTGAGCCCCACTTAG 59.052 47.826 8.11 0.00 45.86 2.18
4932 5321 6.543465 TGACACAATCATCAGATGGGAATAAC 59.457 38.462 10.67 0.00 33.90 1.89
4939 5328 5.123936 AGACATGACACAATCATCAGATGG 58.876 41.667 10.67 0.00 45.52 3.51
4995 5384 9.123709 CAAGCAAATTAAACGAGCAAACTATAA 57.876 29.630 0.00 0.00 0.00 0.98
5072 5462 2.158682 TGGCAGCCAGAACTGTTTTCTA 60.159 45.455 11.22 0.00 39.96 2.10
5073 5463 1.322442 GGCAGCCAGAACTGTTTTCT 58.678 50.000 6.55 0.00 39.96 2.52
5074 5464 1.032014 TGGCAGCCAGAACTGTTTTC 58.968 50.000 11.22 0.00 39.96 2.29
5138 5528 7.716560 TGAGAAAAGTCAATGTCTCAATTGAGA 59.283 33.333 30.05 30.05 44.96 3.27
5139 5529 7.868775 TGAGAAAAGTCAATGTCTCAATTGAG 58.131 34.615 26.56 26.56 44.96 3.02
5140 5530 7.500227 ACTGAGAAAAGTCAATGTCTCAATTGA 59.500 33.333 8.12 8.12 44.33 2.57
5141 5531 7.646314 ACTGAGAAAAGTCAATGTCTCAATTG 58.354 34.615 0.00 0.00 44.33 2.32
5142 5532 7.307632 CGACTGAGAAAAGTCAATGTCTCAATT 60.308 37.037 5.30 0.00 45.77 2.32
5143 5533 6.146837 CGACTGAGAAAAGTCAATGTCTCAAT 59.853 38.462 5.30 0.00 45.77 2.57
5145 5535 4.984785 CGACTGAGAAAAGTCAATGTCTCA 59.015 41.667 5.30 2.53 45.77 3.27
5146 5536 5.223382 TCGACTGAGAAAAGTCAATGTCTC 58.777 41.667 5.30 0.00 45.77 3.36
5147 5537 5.201713 TCGACTGAGAAAAGTCAATGTCT 57.798 39.130 5.30 0.00 45.77 3.41
5148 5538 5.669848 GCATCGACTGAGAAAAGTCAATGTC 60.670 44.000 7.02 0.00 45.77 3.06
5149 5539 4.153117 GCATCGACTGAGAAAAGTCAATGT 59.847 41.667 7.02 0.00 45.77 2.71
5150 5540 4.391216 AGCATCGACTGAGAAAAGTCAATG 59.609 41.667 5.30 3.48 45.77 2.82
5151 5541 4.573900 AGCATCGACTGAGAAAAGTCAAT 58.426 39.130 5.30 0.00 45.77 2.57
5152 5542 3.995199 AGCATCGACTGAGAAAAGTCAA 58.005 40.909 5.30 0.00 45.77 3.18
5153 5543 3.667497 AGCATCGACTGAGAAAAGTCA 57.333 42.857 5.30 0.00 45.77 3.41
5156 5546 8.136057 ACAAATATAGCATCGACTGAGAAAAG 57.864 34.615 0.00 0.00 0.00 2.27
5179 5569 3.887741 CACGAATGCACAAGATCAAACA 58.112 40.909 0.00 0.00 0.00 2.83
5230 5620 1.257750 GGAACCAACAGGCATTCCCC 61.258 60.000 0.00 0.00 35.54 4.81
5231 5621 0.251787 AGGAACCAACAGGCATTCCC 60.252 55.000 0.00 0.00 41.39 3.97
5232 5622 0.890683 CAGGAACCAACAGGCATTCC 59.109 55.000 0.00 0.00 40.87 3.01
5233 5623 0.890683 CCAGGAACCAACAGGCATTC 59.109 55.000 0.00 0.00 0.00 2.67
5234 5624 0.542702 CCCAGGAACCAACAGGCATT 60.543 55.000 0.00 0.00 0.00 3.56
5235 5625 1.077265 CCCAGGAACCAACAGGCAT 59.923 57.895 0.00 0.00 0.00 4.40
5236 5626 2.520458 CCCAGGAACCAACAGGCA 59.480 61.111 0.00 0.00 0.00 4.75
5237 5627 2.283173 CCCCAGGAACCAACAGGC 60.283 66.667 0.00 0.00 0.00 4.85
5238 5628 1.074951 GTCCCCAGGAACCAACAGG 59.925 63.158 0.00 0.00 31.38 4.00
5239 5629 0.405585 ATGTCCCCAGGAACCAACAG 59.594 55.000 0.00 0.00 31.38 3.16
5240 5630 0.404040 GATGTCCCCAGGAACCAACA 59.596 55.000 0.00 0.00 31.38 3.33
5241 5631 0.698818 AGATGTCCCCAGGAACCAAC 59.301 55.000 0.00 0.00 31.38 3.77
5242 5632 0.698238 CAGATGTCCCCAGGAACCAA 59.302 55.000 0.00 0.00 31.38 3.67
5243 5633 0.475632 ACAGATGTCCCCAGGAACCA 60.476 55.000 0.00 0.00 31.38 3.67
5244 5634 0.253327 GACAGATGTCCCCAGGAACC 59.747 60.000 1.33 0.00 39.07 3.62
5245 5635 3.863407 GACAGATGTCCCCAGGAAC 57.137 57.895 1.33 0.00 39.07 3.62
5254 5644 4.187694 GTGAGATTCAAGGGACAGATGTC 58.812 47.826 4.33 4.33 44.04 3.06
5255 5645 3.054802 GGTGAGATTCAAGGGACAGATGT 60.055 47.826 0.00 0.00 0.00 3.06
5256 5646 3.054875 TGGTGAGATTCAAGGGACAGATG 60.055 47.826 0.00 0.00 0.00 2.90
5257 5647 3.184628 TGGTGAGATTCAAGGGACAGAT 58.815 45.455 0.00 0.00 0.00 2.90
5258 5648 2.619931 TGGTGAGATTCAAGGGACAGA 58.380 47.619 0.00 0.00 0.00 3.41
5259 5649 3.641434 ATGGTGAGATTCAAGGGACAG 57.359 47.619 0.00 0.00 0.00 3.51
5260 5650 3.330405 TGAATGGTGAGATTCAAGGGACA 59.670 43.478 0.00 0.00 39.00 4.02
5261 5651 3.955471 TGAATGGTGAGATTCAAGGGAC 58.045 45.455 0.00 0.00 39.00 4.46
5262 5652 4.868172 ATGAATGGTGAGATTCAAGGGA 57.132 40.909 0.00 0.00 43.77 4.20
5263 5653 6.125029 AGTAATGAATGGTGAGATTCAAGGG 58.875 40.000 0.00 0.00 43.77 3.95
5264 5654 7.052873 AGAGTAATGAATGGTGAGATTCAAGG 58.947 38.462 0.00 0.00 43.77 3.61
5265 5655 7.226325 GGAGAGTAATGAATGGTGAGATTCAAG 59.774 40.741 0.00 0.00 43.77 3.02
5266 5656 7.050377 GGAGAGTAATGAATGGTGAGATTCAA 58.950 38.462 0.00 0.00 43.77 2.69
5267 5657 6.408548 GGGAGAGTAATGAATGGTGAGATTCA 60.409 42.308 0.00 0.00 44.47 2.57
5268 5658 5.994668 GGGAGAGTAATGAATGGTGAGATTC 59.005 44.000 0.00 0.00 33.59 2.52
5269 5659 5.453903 CGGGAGAGTAATGAATGGTGAGATT 60.454 44.000 0.00 0.00 0.00 2.40
5270 5660 4.039730 CGGGAGAGTAATGAATGGTGAGAT 59.960 45.833 0.00 0.00 0.00 2.75
5271 5661 3.384789 CGGGAGAGTAATGAATGGTGAGA 59.615 47.826 0.00 0.00 0.00 3.27
5272 5662 3.384789 TCGGGAGAGTAATGAATGGTGAG 59.615 47.826 0.00 0.00 0.00 3.51
5273 5663 3.132289 GTCGGGAGAGTAATGAATGGTGA 59.868 47.826 0.00 0.00 41.26 4.02
5274 5664 3.458189 GTCGGGAGAGTAATGAATGGTG 58.542 50.000 0.00 0.00 41.26 4.17
5275 5665 2.434702 GGTCGGGAGAGTAATGAATGGT 59.565 50.000 0.00 0.00 41.26 3.55
5276 5666 2.224305 GGGTCGGGAGAGTAATGAATGG 60.224 54.545 0.00 0.00 41.26 3.16
5277 5667 2.224305 GGGGTCGGGAGAGTAATGAATG 60.224 54.545 0.00 0.00 41.26 2.67
5278 5668 2.047830 GGGGTCGGGAGAGTAATGAAT 58.952 52.381 0.00 0.00 41.26 2.57
5279 5669 1.492764 GGGGTCGGGAGAGTAATGAA 58.507 55.000 0.00 0.00 41.26 2.57
5280 5670 0.398098 GGGGGTCGGGAGAGTAATGA 60.398 60.000 0.00 0.00 41.26 2.57
5281 5671 2.134092 GGGGGTCGGGAGAGTAATG 58.866 63.158 0.00 0.00 41.26 1.90
5282 5672 4.722389 GGGGGTCGGGAGAGTAAT 57.278 61.111 0.00 0.00 41.26 1.89
5309 5699 4.103153 TCAAAATACTGATAGCAGAGGGGG 59.897 45.833 16.32 0.00 45.17 5.40
5310 5700 5.296151 TCAAAATACTGATAGCAGAGGGG 57.704 43.478 16.32 0.00 45.17 4.79
5311 5701 5.070981 TCCTCAAAATACTGATAGCAGAGGG 59.929 44.000 16.32 4.80 45.17 4.30
5312 5702 5.988561 GTCCTCAAAATACTGATAGCAGAGG 59.011 44.000 16.32 9.34 45.17 3.69
5313 5703 5.689514 CGTCCTCAAAATACTGATAGCAGAG 59.310 44.000 16.32 0.00 45.17 3.35
5314 5704 5.359860 TCGTCCTCAAAATACTGATAGCAGA 59.640 40.000 16.32 0.00 45.17 4.26
5316 5706 5.592104 TCGTCCTCAAAATACTGATAGCA 57.408 39.130 0.00 0.00 0.00 3.49
5317 5707 6.903883 TTTCGTCCTCAAAATACTGATAGC 57.096 37.500 0.00 0.00 0.00 2.97
5318 5708 8.543774 GTGATTTCGTCCTCAAAATACTGATAG 58.456 37.037 0.00 0.00 0.00 2.08
5319 5709 8.258007 AGTGATTTCGTCCTCAAAATACTGATA 58.742 33.333 0.00 0.00 0.00 2.15
5320 5710 7.065085 CAGTGATTTCGTCCTCAAAATACTGAT 59.935 37.037 0.00 0.00 33.78 2.90
5321 5711 6.368791 CAGTGATTTCGTCCTCAAAATACTGA 59.631 38.462 0.00 0.00 33.78 3.41
5322 5712 6.537566 CAGTGATTTCGTCCTCAAAATACTG 58.462 40.000 0.00 0.00 0.00 2.74
5323 5713 6.727824 CAGTGATTTCGTCCTCAAAATACT 57.272 37.500 0.00 0.00 0.00 2.12
5643 6033 9.950680 CAAGTTCAGTTTGTGACTATAAATGTT 57.049 29.630 0.00 0.00 36.65 2.71
5644 6034 9.337396 TCAAGTTCAGTTTGTGACTATAAATGT 57.663 29.630 0.00 0.00 36.65 2.71
5645 6035 9.599322 GTCAAGTTCAGTTTGTGACTATAAATG 57.401 33.333 0.00 0.00 36.65 2.32
5646 6036 8.495949 CGTCAAGTTCAGTTTGTGACTATAAAT 58.504 33.333 0.00 0.00 36.65 1.40
5647 6037 7.493320 ACGTCAAGTTCAGTTTGTGACTATAAA 59.507 33.333 0.00 0.00 36.65 1.40
5648 6038 6.982141 ACGTCAAGTTCAGTTTGTGACTATAA 59.018 34.615 0.00 0.00 36.65 0.98
5649 6039 6.419710 CACGTCAAGTTCAGTTTGTGACTATA 59.580 38.462 0.00 0.00 36.65 1.31
5650 6040 5.234329 CACGTCAAGTTCAGTTTGTGACTAT 59.766 40.000 0.00 0.00 36.65 2.12
5651 6041 4.565166 CACGTCAAGTTCAGTTTGTGACTA 59.435 41.667 0.00 0.00 36.65 2.59
5652 6042 3.370978 CACGTCAAGTTCAGTTTGTGACT 59.629 43.478 0.00 0.00 39.89 3.41
5653 6043 3.369756 TCACGTCAAGTTCAGTTTGTGAC 59.630 43.478 0.00 0.00 33.71 3.67
5654 6044 3.591023 TCACGTCAAGTTCAGTTTGTGA 58.409 40.909 0.00 0.00 33.14 3.58
5655 6045 4.335082 TTCACGTCAAGTTCAGTTTGTG 57.665 40.909 0.00 0.00 0.00 3.33
5656 6046 4.454504 ACTTTCACGTCAAGTTCAGTTTGT 59.545 37.500 4.15 0.00 29.75 2.83
5657 6047 4.969816 ACTTTCACGTCAAGTTCAGTTTG 58.030 39.130 4.15 0.00 29.75 2.93
5658 6048 6.920569 ATACTTTCACGTCAAGTTCAGTTT 57.079 33.333 13.53 0.00 35.95 2.66
5659 6049 6.761714 AGAATACTTTCACGTCAAGTTCAGTT 59.238 34.615 13.53 5.99 35.95 3.16
5660 6050 6.201044 CAGAATACTTTCACGTCAAGTTCAGT 59.799 38.462 13.53 0.00 35.95 3.41
5661 6051 6.201044 ACAGAATACTTTCACGTCAAGTTCAG 59.799 38.462 13.53 7.13 35.95 3.02
5662 6052 6.019075 CACAGAATACTTTCACGTCAAGTTCA 60.019 38.462 13.53 0.00 35.95 3.18
5663 6053 6.200286 TCACAGAATACTTTCACGTCAAGTTC 59.800 38.462 13.53 7.55 35.95 3.01
5664 6054 6.046593 TCACAGAATACTTTCACGTCAAGTT 58.953 36.000 13.53 0.00 35.95 2.66
5665 6055 5.597806 TCACAGAATACTTTCACGTCAAGT 58.402 37.500 12.99 12.99 38.13 3.16
5666 6056 6.712241 ATCACAGAATACTTTCACGTCAAG 57.288 37.500 2.96 2.96 34.08 3.02
5667 6057 7.225734 TCAAATCACAGAATACTTTCACGTCAA 59.774 33.333 0.00 0.00 34.08 3.18
5668 6058 6.704050 TCAAATCACAGAATACTTTCACGTCA 59.296 34.615 0.00 0.00 34.08 4.35
5669 6059 7.010023 GTCAAATCACAGAATACTTTCACGTC 58.990 38.462 0.00 0.00 34.08 4.34
5670 6060 6.073222 GGTCAAATCACAGAATACTTTCACGT 60.073 38.462 0.00 0.00 34.08 4.49
5671 6061 6.307155 GGTCAAATCACAGAATACTTTCACG 58.693 40.000 0.00 0.00 34.08 4.35
5672 6062 6.431234 AGGGTCAAATCACAGAATACTTTCAC 59.569 38.462 0.00 0.00 34.08 3.18
5673 6063 6.542821 AGGGTCAAATCACAGAATACTTTCA 58.457 36.000 0.00 0.00 34.08 2.69
5674 6064 7.454260 AAGGGTCAAATCACAGAATACTTTC 57.546 36.000 0.00 0.00 0.00 2.62
5675 6065 7.839680 AAAGGGTCAAATCACAGAATACTTT 57.160 32.000 0.00 0.00 0.00 2.66
5676 6066 7.839680 AAAAGGGTCAAATCACAGAATACTT 57.160 32.000 0.00 0.00 0.00 2.24
5677 6067 8.383175 TCTAAAAGGGTCAAATCACAGAATACT 58.617 33.333 0.00 0.00 0.00 2.12
5678 6068 8.561738 TCTAAAAGGGTCAAATCACAGAATAC 57.438 34.615 0.00 0.00 0.00 1.89
5679 6069 9.581289 TTTCTAAAAGGGTCAAATCACAGAATA 57.419 29.630 0.00 0.00 0.00 1.75
5680 6070 8.360390 GTTTCTAAAAGGGTCAAATCACAGAAT 58.640 33.333 0.00 0.00 0.00 2.40
5681 6071 7.468084 CGTTTCTAAAAGGGTCAAATCACAGAA 60.468 37.037 0.00 0.00 0.00 3.02
5682 6072 6.017440 CGTTTCTAAAAGGGTCAAATCACAGA 60.017 38.462 0.00 0.00 0.00 3.41
5683 6073 6.142817 CGTTTCTAAAAGGGTCAAATCACAG 58.857 40.000 0.00 0.00 0.00 3.66
5684 6074 5.506649 GCGTTTCTAAAAGGGTCAAATCACA 60.507 40.000 0.00 0.00 0.00 3.58
5685 6075 4.915667 GCGTTTCTAAAAGGGTCAAATCAC 59.084 41.667 0.00 0.00 0.00 3.06
5686 6076 4.022676 GGCGTTTCTAAAAGGGTCAAATCA 60.023 41.667 0.00 0.00 0.00 2.57
5687 6077 4.022676 TGGCGTTTCTAAAAGGGTCAAATC 60.023 41.667 0.00 0.00 0.00 2.17
5688 6078 3.892588 TGGCGTTTCTAAAAGGGTCAAAT 59.107 39.130 0.00 0.00 0.00 2.32
5689 6079 3.288964 TGGCGTTTCTAAAAGGGTCAAA 58.711 40.909 0.00 0.00 0.00 2.69
5690 6080 2.882137 CTGGCGTTTCTAAAAGGGTCAA 59.118 45.455 0.00 0.00 0.00 3.18
5691 6081 2.105134 TCTGGCGTTTCTAAAAGGGTCA 59.895 45.455 0.00 0.00 0.00 4.02
5692 6082 2.742589 CTCTGGCGTTTCTAAAAGGGTC 59.257 50.000 0.00 0.00 0.00 4.46
5693 6083 2.779506 CTCTGGCGTTTCTAAAAGGGT 58.220 47.619 0.00 0.00 0.00 4.34
5694 6084 1.468914 GCTCTGGCGTTTCTAAAAGGG 59.531 52.381 0.00 0.00 0.00 3.95
5695 6085 1.468914 GGCTCTGGCGTTTCTAAAAGG 59.531 52.381 0.00 0.00 39.81 3.11
5696 6086 1.468914 GGGCTCTGGCGTTTCTAAAAG 59.531 52.381 0.00 0.00 39.81 2.27
5697 6087 1.530323 GGGCTCTGGCGTTTCTAAAA 58.470 50.000 0.00 0.00 39.81 1.52
5698 6088 0.672401 CGGGCTCTGGCGTTTCTAAA 60.672 55.000 0.00 0.00 39.81 1.85
5699 6089 1.079405 CGGGCTCTGGCGTTTCTAA 60.079 57.895 0.00 0.00 39.81 2.10
5700 6090 2.280552 ACGGGCTCTGGCGTTTCTA 61.281 57.895 0.00 0.00 39.81 2.10
5701 6091 3.626924 ACGGGCTCTGGCGTTTCT 61.627 61.111 0.00 0.00 39.81 2.52
5702 6092 3.423154 CACGGGCTCTGGCGTTTC 61.423 66.667 0.00 0.00 39.81 2.78
5703 6093 3.936203 TCACGGGCTCTGGCGTTT 61.936 61.111 0.00 0.00 39.81 3.60
5704 6094 4.681978 GTCACGGGCTCTGGCGTT 62.682 66.667 0.00 0.00 39.81 4.84
5707 6097 4.681978 AACGTCACGGGCTCTGGC 62.682 66.667 0.35 0.00 37.82 4.85
5708 6098 2.027625 GAAACGTCACGGGCTCTGG 61.028 63.158 0.35 0.00 0.00 3.86
5709 6099 2.027625 GGAAACGTCACGGGCTCTG 61.028 63.158 0.35 0.00 0.00 3.35
5710 6100 2.342648 GGAAACGTCACGGGCTCT 59.657 61.111 0.35 0.00 0.00 4.09
5711 6101 2.029964 TGGAAACGTCACGGGCTC 59.970 61.111 0.35 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.