Multiple sequence alignment - TraesCS3A01G236600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G236600 chr3A 100.000 2367 0 0 1 2367 442283372 442285738 0.000000e+00 4372
1 TraesCS3A01G236600 chr3A 89.908 1625 125 15 380 1980 109155299 109156908 0.000000e+00 2056
2 TraesCS3A01G236600 chr5D 91.283 2019 132 13 373 2367 108339813 108341811 0.000000e+00 2713
3 TraesCS3A01G236600 chr5D 90.729 2017 150 12 375 2367 452554107 452552104 0.000000e+00 2654
4 TraesCS3A01G236600 chr5D 91.008 1935 135 11 456 2365 432509913 432511833 0.000000e+00 2573
5 TraesCS3A01G236600 chr5D 89.950 2020 161 11 373 2367 486000728 486002730 0.000000e+00 2567
6 TraesCS3A01G236600 chr3D 90.035 2017 142 21 375 2367 315770730 315768749 0.000000e+00 2556
7 TraesCS3A01G236600 chr3D 93.280 372 21 2 1 369 327836860 327837230 1.600000e-151 545
8 TraesCS3A01G236600 chr7D 89.807 2021 159 15 373 2367 182612485 182610486 0.000000e+00 2547
9 TraesCS3A01G236600 chr7D 88.848 1883 185 10 456 2330 83805761 83807626 0.000000e+00 2290
10 TraesCS3A01G236600 chr7D 89.207 1779 147 10 368 2122 616482793 616484550 0.000000e+00 2180
11 TraesCS3A01G236600 chr7D 85.738 603 75 5 373 972 562193461 562194055 5.550000e-176 627
12 TraesCS3A01G236600 chr4A 89.492 2008 190 13 366 2367 726743215 726741223 0.000000e+00 2519
13 TraesCS3A01G236600 chr3B 88.227 2013 191 23 381 2366 225299007 225297014 0.000000e+00 2362
14 TraesCS3A01G236600 chr5A 87.488 2006 207 22 374 2367 311548595 311546622 0.000000e+00 2274
15 TraesCS3A01G236600 chr1B 87.531 1997 204 23 381 2366 585342164 585340202 0.000000e+00 2266
16 TraesCS3A01G236600 chr6A 88.137 1922 194 19 456 2367 444877286 444879183 0.000000e+00 2255
17 TraesCS3A01G236600 chr6B 86.939 1715 187 23 638 2330 484540857 484539158 0.000000e+00 1892
18 TraesCS3A01G236600 chr4D 87.261 1044 90 15 366 1384 499251329 499250304 0.000000e+00 1151
19 TraesCS3A01G236600 chr2D 86.029 1045 109 9 373 1394 50494282 50495312 0.000000e+00 1086
20 TraesCS3A01G236600 chr2D 85.500 600 64 9 525 1118 621506910 621506328 2.600000e-169 604
21 TraesCS3A01G236600 chr2D 86.456 443 44 4 373 812 572354904 572355333 2.750000e-129 472
22 TraesCS3A01G236600 chr2B 87.191 445 41 4 366 807 376121378 376121809 2.110000e-135 492


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G236600 chr3A 442283372 442285738 2366 False 4372 4372 100.000 1 2367 1 chr3A.!!$F2 2366
1 TraesCS3A01G236600 chr3A 109155299 109156908 1609 False 2056 2056 89.908 380 1980 1 chr3A.!!$F1 1600
2 TraesCS3A01G236600 chr5D 108339813 108341811 1998 False 2713 2713 91.283 373 2367 1 chr5D.!!$F1 1994
3 TraesCS3A01G236600 chr5D 452552104 452554107 2003 True 2654 2654 90.729 375 2367 1 chr5D.!!$R1 1992
4 TraesCS3A01G236600 chr5D 432509913 432511833 1920 False 2573 2573 91.008 456 2365 1 chr5D.!!$F2 1909
5 TraesCS3A01G236600 chr5D 486000728 486002730 2002 False 2567 2567 89.950 373 2367 1 chr5D.!!$F3 1994
6 TraesCS3A01G236600 chr3D 315768749 315770730 1981 True 2556 2556 90.035 375 2367 1 chr3D.!!$R1 1992
7 TraesCS3A01G236600 chr7D 182610486 182612485 1999 True 2547 2547 89.807 373 2367 1 chr7D.!!$R1 1994
8 TraesCS3A01G236600 chr7D 83805761 83807626 1865 False 2290 2290 88.848 456 2330 1 chr7D.!!$F1 1874
9 TraesCS3A01G236600 chr7D 616482793 616484550 1757 False 2180 2180 89.207 368 2122 1 chr7D.!!$F3 1754
10 TraesCS3A01G236600 chr7D 562193461 562194055 594 False 627 627 85.738 373 972 1 chr7D.!!$F2 599
11 TraesCS3A01G236600 chr4A 726741223 726743215 1992 True 2519 2519 89.492 366 2367 1 chr4A.!!$R1 2001
12 TraesCS3A01G236600 chr3B 225297014 225299007 1993 True 2362 2362 88.227 381 2366 1 chr3B.!!$R1 1985
13 TraesCS3A01G236600 chr5A 311546622 311548595 1973 True 2274 2274 87.488 374 2367 1 chr5A.!!$R1 1993
14 TraesCS3A01G236600 chr1B 585340202 585342164 1962 True 2266 2266 87.531 381 2366 1 chr1B.!!$R1 1985
15 TraesCS3A01G236600 chr6A 444877286 444879183 1897 False 2255 2255 88.137 456 2367 1 chr6A.!!$F1 1911
16 TraesCS3A01G236600 chr6B 484539158 484540857 1699 True 1892 1892 86.939 638 2330 1 chr6B.!!$R1 1692
17 TraesCS3A01G236600 chr4D 499250304 499251329 1025 True 1151 1151 87.261 366 1384 1 chr4D.!!$R1 1018
18 TraesCS3A01G236600 chr2D 50494282 50495312 1030 False 1086 1086 86.029 373 1394 1 chr2D.!!$F1 1021
19 TraesCS3A01G236600 chr2D 621506328 621506910 582 True 604 604 85.500 525 1118 1 chr2D.!!$R1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.040058 TCATTGCTTGGCACCCAGAT 59.960 50.0 0.0 0.0 38.71 2.90 F
197 198 0.044855 AATGTCTGGGAGGCCCTAGT 59.955 55.0 0.0 0.0 45.70 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1202 1291 0.02877 CGCCAACACTCGCAAAGAAA 59.971 50.0 0.0 0.0 0.00 2.52 R
2082 2186 0.96692 ACATCTTCTCGAACCACGGT 59.033 50.0 0.0 0.0 42.82 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.762933 ATTATTTTTAATCCCATTGATGTTCGG 57.237 29.630 0.00 0.00 32.68 4.30
39 40 6.842437 TTTTTAATCCCATTGATGTTCGGA 57.158 33.333 0.00 0.00 32.68 4.55
40 41 6.449635 TTTTAATCCCATTGATGTTCGGAG 57.550 37.500 0.00 0.00 32.68 4.63
41 42 3.931907 AATCCCATTGATGTTCGGAGA 57.068 42.857 0.00 0.00 32.68 3.71
42 43 3.931907 ATCCCATTGATGTTCGGAGAA 57.068 42.857 0.00 0.00 34.75 2.87
43 44 3.931907 TCCCATTGATGTTCGGAGAAT 57.068 42.857 0.00 0.00 45.90 2.40
44 45 3.808728 TCCCATTGATGTTCGGAGAATC 58.191 45.455 0.00 0.00 45.90 2.52
45 46 3.199727 TCCCATTGATGTTCGGAGAATCA 59.800 43.478 1.76 1.76 45.90 2.57
46 47 4.139786 CCCATTGATGTTCGGAGAATCAT 58.860 43.478 5.77 0.00 45.90 2.45
47 48 4.023450 CCCATTGATGTTCGGAGAATCATG 60.023 45.833 5.77 0.00 45.90 3.07
48 49 4.023450 CCATTGATGTTCGGAGAATCATGG 60.023 45.833 5.77 10.10 45.90 3.66
49 50 4.486125 TTGATGTTCGGAGAATCATGGA 57.514 40.909 5.77 0.00 45.90 3.41
50 51 4.486125 TGATGTTCGGAGAATCATGGAA 57.514 40.909 0.00 0.00 45.90 3.53
51 52 4.842574 TGATGTTCGGAGAATCATGGAAA 58.157 39.130 0.00 0.00 45.90 3.13
52 53 5.439721 TGATGTTCGGAGAATCATGGAAAT 58.560 37.500 0.00 0.00 45.90 2.17
53 54 5.887598 TGATGTTCGGAGAATCATGGAAATT 59.112 36.000 0.00 0.00 45.90 1.82
54 55 5.818136 TGTTCGGAGAATCATGGAAATTC 57.182 39.130 0.00 0.00 45.90 2.17
55 56 4.640201 TGTTCGGAGAATCATGGAAATTCC 59.360 41.667 4.79 4.79 45.90 3.01
56 57 4.778213 TCGGAGAATCATGGAAATTCCT 57.222 40.909 13.78 0.00 35.00 3.36
57 58 4.708177 TCGGAGAATCATGGAAATTCCTC 58.292 43.478 13.78 1.88 35.00 3.71
58 59 4.410228 TCGGAGAATCATGGAAATTCCTCT 59.590 41.667 13.78 7.00 35.00 3.69
59 60 5.602561 TCGGAGAATCATGGAAATTCCTCTA 59.397 40.000 13.78 0.00 35.00 2.43
60 61 6.099701 TCGGAGAATCATGGAAATTCCTCTAA 59.900 38.462 13.78 0.00 35.00 2.10
61 62 6.767902 CGGAGAATCATGGAAATTCCTCTAAA 59.232 38.462 13.78 0.00 35.00 1.85
62 63 7.254932 CGGAGAATCATGGAAATTCCTCTAAAC 60.255 40.741 13.78 1.77 35.00 2.01
63 64 7.777440 GGAGAATCATGGAAATTCCTCTAAACT 59.223 37.037 13.78 6.34 35.00 2.66
64 65 9.183368 GAGAATCATGGAAATTCCTCTAAACTT 57.817 33.333 13.78 0.00 33.84 2.66
65 66 9.539194 AGAATCATGGAAATTCCTCTAAACTTT 57.461 29.630 13.78 0.00 37.46 2.66
66 67 9.794685 GAATCATGGAAATTCCTCTAAACTTTC 57.205 33.333 13.78 2.84 37.46 2.62
67 68 8.884124 ATCATGGAAATTCCTCTAAACTTTCA 57.116 30.769 13.78 0.00 37.46 2.69
68 69 8.884124 TCATGGAAATTCCTCTAAACTTTCAT 57.116 30.769 13.78 0.00 37.46 2.57
69 70 8.742777 TCATGGAAATTCCTCTAAACTTTCATG 58.257 33.333 13.78 4.19 37.46 3.07
70 71 6.924111 TGGAAATTCCTCTAAACTTTCATGC 58.076 36.000 13.78 0.00 37.46 4.06
71 72 6.493115 TGGAAATTCCTCTAAACTTTCATGCA 59.507 34.615 13.78 0.00 37.46 3.96
72 73 7.178983 TGGAAATTCCTCTAAACTTTCATGCAT 59.821 33.333 13.78 0.00 37.46 3.96
73 74 8.037166 GGAAATTCCTCTAAACTTTCATGCATT 58.963 33.333 4.46 0.00 32.53 3.56
74 75 9.428097 GAAATTCCTCTAAACTTTCATGCATTT 57.572 29.630 0.00 0.00 0.00 2.32
78 79 9.859427 TTCCTCTAAACTTTCATGCATTTAATG 57.141 29.630 0.00 0.00 0.00 1.90
79 80 9.241919 TCCTCTAAACTTTCATGCATTTAATGA 57.758 29.630 9.36 0.00 32.24 2.57
80 81 9.294030 CCTCTAAACTTTCATGCATTTAATGAC 57.706 33.333 9.36 1.09 33.84 3.06
85 86 9.715121 AAACTTTCATGCATTTAATGACTTCAT 57.285 25.926 9.36 0.00 38.41 2.57
87 88 9.146984 ACTTTCATGCATTTAATGACTTCATTG 57.853 29.630 13.67 0.30 45.34 2.82
88 89 7.528481 TTCATGCATTTAATGACTTCATTGC 57.472 32.000 13.67 9.92 45.34 3.56
89 90 6.869695 TCATGCATTTAATGACTTCATTGCT 58.130 32.000 13.67 0.00 45.34 3.91
90 91 7.324935 TCATGCATTTAATGACTTCATTGCTT 58.675 30.769 13.67 5.69 45.34 3.91
91 92 6.954616 TGCATTTAATGACTTCATTGCTTG 57.045 33.333 13.67 9.15 45.34 4.01
92 93 5.870433 TGCATTTAATGACTTCATTGCTTGG 59.130 36.000 13.67 2.60 45.34 3.61
93 94 5.220529 GCATTTAATGACTTCATTGCTTGGC 60.221 40.000 13.67 7.80 45.34 4.52
94 95 5.465532 TTTAATGACTTCATTGCTTGGCA 57.534 34.783 13.67 0.00 45.34 4.92
95 96 3.308438 AATGACTTCATTGCTTGGCAC 57.692 42.857 3.60 0.00 44.22 5.01
96 97 0.961019 TGACTTCATTGCTTGGCACC 59.039 50.000 0.00 0.00 38.71 5.01
97 98 0.244721 GACTTCATTGCTTGGCACCC 59.755 55.000 0.00 0.00 38.71 4.61
98 99 0.469705 ACTTCATTGCTTGGCACCCA 60.470 50.000 0.00 0.00 38.71 4.51
99 100 0.245539 CTTCATTGCTTGGCACCCAG 59.754 55.000 0.00 0.00 38.71 4.45
100 101 0.178967 TTCATTGCTTGGCACCCAGA 60.179 50.000 0.00 0.00 38.71 3.86
101 102 0.040058 TCATTGCTTGGCACCCAGAT 59.960 50.000 0.00 0.00 38.71 2.90
102 103 0.458669 CATTGCTTGGCACCCAGATC 59.541 55.000 0.00 0.00 38.71 2.75
103 104 0.040058 ATTGCTTGGCACCCAGATCA 59.960 50.000 0.00 0.00 38.71 2.92
104 105 0.895100 TTGCTTGGCACCCAGATCAC 60.895 55.000 0.00 0.00 38.71 3.06
105 106 1.303561 GCTTGGCACCCAGATCACA 60.304 57.895 0.00 0.00 33.81 3.58
106 107 0.895100 GCTTGGCACCCAGATCACAA 60.895 55.000 0.00 0.00 33.81 3.33
107 108 1.171308 CTTGGCACCCAGATCACAAG 58.829 55.000 0.00 0.00 33.81 3.16
108 109 0.251297 TTGGCACCCAGATCACAAGG 60.251 55.000 0.00 0.00 33.81 3.61
114 115 2.292828 CCCAGATCACAAGGGTGTTT 57.707 50.000 0.00 0.00 45.45 2.83
115 116 2.597455 CCCAGATCACAAGGGTGTTTT 58.403 47.619 0.00 0.00 45.45 2.43
116 117 2.965147 CCCAGATCACAAGGGTGTTTTT 59.035 45.455 0.00 0.00 45.45 1.94
117 118 3.005791 CCCAGATCACAAGGGTGTTTTTC 59.994 47.826 0.00 0.00 45.45 2.29
118 119 3.636300 CCAGATCACAAGGGTGTTTTTCA 59.364 43.478 0.00 0.00 45.45 2.69
119 120 4.261741 CCAGATCACAAGGGTGTTTTTCAG 60.262 45.833 0.00 0.00 45.45 3.02
120 121 4.339247 CAGATCACAAGGGTGTTTTTCAGT 59.661 41.667 0.00 0.00 45.45 3.41
121 122 4.580580 AGATCACAAGGGTGTTTTTCAGTC 59.419 41.667 0.00 0.00 45.45 3.51
122 123 3.020984 TCACAAGGGTGTTTTTCAGTCC 58.979 45.455 0.00 0.00 45.45 3.85
123 124 2.021457 ACAAGGGTGTTTTTCAGTCCG 58.979 47.619 0.00 0.00 32.58 4.79
124 125 1.336755 CAAGGGTGTTTTTCAGTCCGG 59.663 52.381 0.00 0.00 0.00 5.14
125 126 0.841289 AGGGTGTTTTTCAGTCCGGA 59.159 50.000 0.00 0.00 0.00 5.14
126 127 1.423921 AGGGTGTTTTTCAGTCCGGAT 59.576 47.619 7.81 0.00 0.00 4.18
127 128 2.158519 AGGGTGTTTTTCAGTCCGGATT 60.159 45.455 7.81 0.00 0.00 3.01
128 129 2.030274 GGGTGTTTTTCAGTCCGGATTG 60.030 50.000 20.32 20.32 0.00 2.67
129 130 2.607038 GGTGTTTTTCAGTCCGGATTGC 60.607 50.000 21.43 8.18 0.00 3.56
130 131 1.265635 TGTTTTTCAGTCCGGATTGCG 59.734 47.619 21.43 4.15 0.00 4.85
131 132 1.265905 GTTTTTCAGTCCGGATTGCGT 59.734 47.619 21.43 0.00 0.00 5.24
132 133 2.459060 TTTTCAGTCCGGATTGCGTA 57.541 45.000 21.43 7.07 0.00 4.42
133 134 1.717194 TTTCAGTCCGGATTGCGTAC 58.283 50.000 21.43 0.07 0.00 3.67
134 135 0.108520 TTCAGTCCGGATTGCGTACC 60.109 55.000 21.43 0.00 0.00 3.34
135 136 1.216977 CAGTCCGGATTGCGTACCA 59.783 57.895 14.58 0.00 0.00 3.25
136 137 0.179084 CAGTCCGGATTGCGTACCAT 60.179 55.000 14.58 0.00 0.00 3.55
137 138 1.067974 CAGTCCGGATTGCGTACCATA 59.932 52.381 14.58 0.00 0.00 2.74
138 139 1.968493 AGTCCGGATTGCGTACCATAT 59.032 47.619 7.81 0.00 0.00 1.78
139 140 2.066262 GTCCGGATTGCGTACCATATG 58.934 52.381 7.81 0.00 0.00 1.78
140 141 0.796312 CCGGATTGCGTACCATATGC 59.204 55.000 0.00 0.00 41.05 3.14
148 149 3.863041 TGCGTACCATATGCAGTTTACA 58.137 40.909 0.00 0.00 45.11 2.41
149 150 3.619483 TGCGTACCATATGCAGTTTACAC 59.381 43.478 0.00 0.00 45.11 2.90
150 151 3.869246 GCGTACCATATGCAGTTTACACT 59.131 43.478 0.00 0.00 40.39 3.55
151 152 4.025979 GCGTACCATATGCAGTTTACACTC 60.026 45.833 0.00 0.00 40.39 3.51
152 153 5.348986 CGTACCATATGCAGTTTACACTCT 58.651 41.667 0.00 0.00 0.00 3.24
153 154 5.810587 CGTACCATATGCAGTTTACACTCTT 59.189 40.000 0.00 0.00 0.00 2.85
154 155 6.312918 CGTACCATATGCAGTTTACACTCTTT 59.687 38.462 0.00 0.00 0.00 2.52
155 156 6.743575 ACCATATGCAGTTTACACTCTTTC 57.256 37.500 0.00 0.00 0.00 2.62
156 157 5.648092 ACCATATGCAGTTTACACTCTTTCC 59.352 40.000 0.00 0.00 0.00 3.13
157 158 5.220662 CCATATGCAGTTTACACTCTTTCCG 60.221 44.000 0.00 0.00 0.00 4.30
158 159 2.489971 TGCAGTTTACACTCTTTCCGG 58.510 47.619 0.00 0.00 0.00 5.14
159 160 1.197036 GCAGTTTACACTCTTTCCGGC 59.803 52.381 0.00 0.00 0.00 6.13
160 161 2.767505 CAGTTTACACTCTTTCCGGCT 58.232 47.619 0.00 0.00 0.00 5.52
161 162 2.480419 CAGTTTACACTCTTTCCGGCTG 59.520 50.000 0.00 0.00 0.00 4.85
162 163 1.197036 GTTTACACTCTTTCCGGCTGC 59.803 52.381 0.00 0.00 0.00 5.25
163 164 0.394938 TTACACTCTTTCCGGCTGCA 59.605 50.000 0.50 0.00 0.00 4.41
164 165 0.613260 TACACTCTTTCCGGCTGCAT 59.387 50.000 0.50 0.00 0.00 3.96
165 166 0.957395 ACACTCTTTCCGGCTGCATG 60.957 55.000 0.50 0.00 0.00 4.06
166 167 2.042831 ACTCTTTCCGGCTGCATGC 61.043 57.895 11.82 11.82 41.94 4.06
167 168 2.033911 TCTTTCCGGCTGCATGCA 59.966 55.556 21.29 21.29 45.15 3.96
168 169 1.588824 CTCTTTCCGGCTGCATGCAA 61.589 55.000 22.88 2.88 45.15 4.08
169 170 1.177895 TCTTTCCGGCTGCATGCAAA 61.178 50.000 22.88 9.87 45.15 3.68
170 171 1.006337 TTTCCGGCTGCATGCAAAC 60.006 52.632 22.88 16.35 45.15 2.93
171 172 1.462731 TTTCCGGCTGCATGCAAACT 61.463 50.000 22.88 0.00 45.15 2.66
172 173 1.462731 TTCCGGCTGCATGCAAACTT 61.463 50.000 22.88 0.00 45.15 2.66
173 174 1.735198 CCGGCTGCATGCAAACTTG 60.735 57.895 22.88 10.75 45.15 3.16
174 175 1.286570 CGGCTGCATGCAAACTTGA 59.713 52.632 22.88 0.00 45.15 3.02
175 176 0.108992 CGGCTGCATGCAAACTTGAT 60.109 50.000 22.88 0.00 45.15 2.57
176 177 1.355971 GGCTGCATGCAAACTTGATG 58.644 50.000 22.88 8.40 45.15 3.07
177 178 1.355971 GCTGCATGCAAACTTGATGG 58.644 50.000 22.88 7.64 42.31 3.51
178 179 1.067425 GCTGCATGCAAACTTGATGGA 60.067 47.619 22.88 0.00 42.31 3.41
179 180 2.610976 GCTGCATGCAAACTTGATGGAA 60.611 45.455 22.88 0.00 42.31 3.53
180 181 3.857052 CTGCATGCAAACTTGATGGAAT 58.143 40.909 22.88 0.00 0.00 3.01
181 182 3.591023 TGCATGCAAACTTGATGGAATG 58.409 40.909 20.30 0.00 0.00 2.67
182 183 3.007074 TGCATGCAAACTTGATGGAATGT 59.993 39.130 20.30 0.00 0.00 2.71
183 184 3.615496 GCATGCAAACTTGATGGAATGTC 59.385 43.478 14.21 0.00 0.00 3.06
184 185 4.619863 GCATGCAAACTTGATGGAATGTCT 60.620 41.667 14.21 0.00 0.00 3.41
185 186 4.508461 TGCAAACTTGATGGAATGTCTG 57.492 40.909 0.00 0.00 0.00 3.51
186 187 3.256383 TGCAAACTTGATGGAATGTCTGG 59.744 43.478 0.00 0.00 0.00 3.86
187 188 3.367703 GCAAACTTGATGGAATGTCTGGG 60.368 47.826 0.00 0.00 0.00 4.45
188 189 4.081406 CAAACTTGATGGAATGTCTGGGA 58.919 43.478 0.00 0.00 0.00 4.37
189 190 3.641434 ACTTGATGGAATGTCTGGGAG 57.359 47.619 0.00 0.00 0.00 4.30
190 191 2.240667 ACTTGATGGAATGTCTGGGAGG 59.759 50.000 0.00 0.00 0.00 4.30
191 192 0.548031 TGATGGAATGTCTGGGAGGC 59.452 55.000 0.00 0.00 0.00 4.70
192 193 0.179006 GATGGAATGTCTGGGAGGCC 60.179 60.000 0.00 0.00 0.00 5.19
193 194 1.649271 ATGGAATGTCTGGGAGGCCC 61.649 60.000 0.00 0.00 45.71 5.80
194 195 2.003548 GGAATGTCTGGGAGGCCCT 61.004 63.158 0.00 0.00 45.70 5.19
195 196 0.694444 GGAATGTCTGGGAGGCCCTA 60.694 60.000 0.00 0.00 45.70 3.53
196 197 0.761802 GAATGTCTGGGAGGCCCTAG 59.238 60.000 0.00 0.00 45.70 3.02
197 198 0.044855 AATGTCTGGGAGGCCCTAGT 59.955 55.000 0.00 0.00 45.70 2.57
198 199 0.044855 ATGTCTGGGAGGCCCTAGTT 59.955 55.000 0.00 0.00 45.70 2.24
199 200 0.617820 TGTCTGGGAGGCCCTAGTTC 60.618 60.000 0.00 0.00 45.70 3.01
200 201 0.617820 GTCTGGGAGGCCCTAGTTCA 60.618 60.000 0.00 0.00 45.70 3.18
201 202 0.617820 TCTGGGAGGCCCTAGTTCAC 60.618 60.000 0.00 0.00 45.70 3.18
202 203 0.618968 CTGGGAGGCCCTAGTTCACT 60.619 60.000 0.00 0.00 45.70 3.41
203 204 0.909610 TGGGAGGCCCTAGTTCACTG 60.910 60.000 0.00 0.00 45.70 3.66
204 205 1.627297 GGGAGGCCCTAGTTCACTGG 61.627 65.000 0.00 0.00 41.34 4.00
205 206 1.222113 GAGGCCCTAGTTCACTGGC 59.778 63.158 0.00 0.52 43.26 4.85
206 207 1.229658 AGGCCCTAGTTCACTGGCT 60.230 57.895 0.00 0.00 43.50 4.75
207 208 1.078143 GGCCCTAGTTCACTGGCTG 60.078 63.158 7.93 0.00 43.50 4.85
208 209 1.679898 GCCCTAGTTCACTGGCTGT 59.320 57.895 1.82 0.00 40.77 4.40
210 211 0.687354 CCCTAGTTCACTGGCTGTGT 59.313 55.000 21.64 7.71 46.27 3.72
211 212 1.609061 CCCTAGTTCACTGGCTGTGTG 60.609 57.143 21.64 11.09 46.27 3.82
212 213 1.609061 CCTAGTTCACTGGCTGTGTGG 60.609 57.143 21.64 13.72 46.27 4.17
213 214 1.344438 CTAGTTCACTGGCTGTGTGGA 59.656 52.381 21.64 8.65 46.27 4.02
214 215 0.107456 AGTTCACTGGCTGTGTGGAG 59.893 55.000 21.64 0.00 46.27 3.86
215 216 0.179045 GTTCACTGGCTGTGTGGAGT 60.179 55.000 21.64 0.00 46.27 3.85
216 217 1.070134 GTTCACTGGCTGTGTGGAGTA 59.930 52.381 21.64 1.23 46.27 2.59
217 218 1.644509 TCACTGGCTGTGTGGAGTAT 58.355 50.000 21.64 0.00 46.27 2.12
218 219 1.977854 TCACTGGCTGTGTGGAGTATT 59.022 47.619 21.64 0.00 46.27 1.89
219 220 2.371841 TCACTGGCTGTGTGGAGTATTT 59.628 45.455 21.64 0.00 46.27 1.40
220 221 2.485426 CACTGGCTGTGTGGAGTATTTG 59.515 50.000 15.53 0.00 41.53 2.32
221 222 2.086869 CTGGCTGTGTGGAGTATTTGG 58.913 52.381 0.00 0.00 0.00 3.28
222 223 1.702401 TGGCTGTGTGGAGTATTTGGA 59.298 47.619 0.00 0.00 0.00 3.53
223 224 2.107378 TGGCTGTGTGGAGTATTTGGAA 59.893 45.455 0.00 0.00 0.00 3.53
224 225 3.153919 GGCTGTGTGGAGTATTTGGAAA 58.846 45.455 0.00 0.00 0.00 3.13
225 226 3.057526 GGCTGTGTGGAGTATTTGGAAAC 60.058 47.826 0.00 0.00 0.00 2.78
226 227 3.821033 GCTGTGTGGAGTATTTGGAAACT 59.179 43.478 0.00 0.00 0.00 2.66
227 228 4.083271 GCTGTGTGGAGTATTTGGAAACTC 60.083 45.833 0.00 0.00 41.16 3.01
228 229 5.042463 TGTGTGGAGTATTTGGAAACTCA 57.958 39.130 5.00 0.00 43.21 3.41
229 230 5.441500 TGTGTGGAGTATTTGGAAACTCAA 58.558 37.500 5.00 0.00 43.21 3.02
230 231 5.530915 TGTGTGGAGTATTTGGAAACTCAAG 59.469 40.000 5.00 0.00 43.21 3.02
231 232 5.763204 GTGTGGAGTATTTGGAAACTCAAGA 59.237 40.000 5.00 0.00 43.21 3.02
232 233 6.431234 GTGTGGAGTATTTGGAAACTCAAGAT 59.569 38.462 5.00 0.00 43.21 2.40
233 234 6.655003 TGTGGAGTATTTGGAAACTCAAGATC 59.345 38.462 5.00 0.00 43.21 2.75
234 235 6.094186 GTGGAGTATTTGGAAACTCAAGATCC 59.906 42.308 5.00 0.00 43.21 3.36
235 236 5.590663 GGAGTATTTGGAAACTCAAGATCCC 59.409 44.000 5.00 0.00 43.21 3.85
236 237 6.139679 AGTATTTGGAAACTCAAGATCCCA 57.860 37.500 0.00 0.00 32.01 4.37
237 238 5.946377 AGTATTTGGAAACTCAAGATCCCAC 59.054 40.000 0.00 0.00 32.01 4.61
238 239 2.472695 TGGAAACTCAAGATCCCACG 57.527 50.000 0.00 0.00 32.01 4.94
239 240 1.087501 GGAAACTCAAGATCCCACGC 58.912 55.000 0.00 0.00 0.00 5.34
240 241 1.610624 GGAAACTCAAGATCCCACGCA 60.611 52.381 0.00 0.00 0.00 5.24
241 242 2.151202 GAAACTCAAGATCCCACGCAA 58.849 47.619 0.00 0.00 0.00 4.85
242 243 2.270352 AACTCAAGATCCCACGCAAA 57.730 45.000 0.00 0.00 0.00 3.68
243 244 1.813513 ACTCAAGATCCCACGCAAAG 58.186 50.000 0.00 0.00 0.00 2.77
244 245 1.072331 ACTCAAGATCCCACGCAAAGT 59.928 47.619 0.00 0.00 0.00 2.66
245 246 2.154462 CTCAAGATCCCACGCAAAGTT 58.846 47.619 0.00 0.00 0.00 2.66
246 247 2.151202 TCAAGATCCCACGCAAAGTTC 58.849 47.619 0.00 0.00 0.00 3.01
247 248 1.879380 CAAGATCCCACGCAAAGTTCA 59.121 47.619 0.00 0.00 0.00 3.18
248 249 2.489329 CAAGATCCCACGCAAAGTTCAT 59.511 45.455 0.00 0.00 0.00 2.57
249 250 2.795329 AGATCCCACGCAAAGTTCATT 58.205 42.857 0.00 0.00 0.00 2.57
250 251 3.157087 AGATCCCACGCAAAGTTCATTT 58.843 40.909 0.00 0.00 0.00 2.32
251 252 3.573967 AGATCCCACGCAAAGTTCATTTT 59.426 39.130 0.00 0.00 0.00 1.82
252 253 3.810310 TCCCACGCAAAGTTCATTTTT 57.190 38.095 0.00 0.00 0.00 1.94
253 254 3.452474 TCCCACGCAAAGTTCATTTTTG 58.548 40.909 0.00 0.00 38.30 2.44
254 255 3.118956 TCCCACGCAAAGTTCATTTTTGT 60.119 39.130 0.46 0.00 37.73 2.83
255 256 3.001127 CCCACGCAAAGTTCATTTTTGTG 59.999 43.478 9.06 9.06 46.25 3.33
258 259 4.838665 CGCAAAGTTCATTTTTGTGTGT 57.161 36.364 3.77 0.00 39.78 3.72
259 260 4.567127 CGCAAAGTTCATTTTTGTGTGTG 58.433 39.130 3.77 0.00 39.78 3.82
260 261 4.492247 CGCAAAGTTCATTTTTGTGTGTGG 60.492 41.667 3.77 0.00 39.78 4.17
261 262 4.629200 GCAAAGTTCATTTTTGTGTGTGGA 59.371 37.500 0.46 0.00 37.73 4.02
262 263 5.294060 GCAAAGTTCATTTTTGTGTGTGGAT 59.706 36.000 0.46 0.00 37.73 3.41
263 264 6.707711 CAAAGTTCATTTTTGTGTGTGGATG 58.292 36.000 0.00 0.00 32.30 3.51
264 265 5.850557 AGTTCATTTTTGTGTGTGGATGA 57.149 34.783 0.00 0.00 0.00 2.92
265 266 6.409524 AGTTCATTTTTGTGTGTGGATGAT 57.590 33.333 0.00 0.00 0.00 2.45
266 267 6.819284 AGTTCATTTTTGTGTGTGGATGATT 58.181 32.000 0.00 0.00 0.00 2.57
267 268 6.925165 AGTTCATTTTTGTGTGTGGATGATTC 59.075 34.615 0.00 0.00 0.00 2.52
268 269 6.653526 TCATTTTTGTGTGTGGATGATTCT 57.346 33.333 0.00 0.00 0.00 2.40
269 270 7.757941 TCATTTTTGTGTGTGGATGATTCTA 57.242 32.000 0.00 0.00 0.00 2.10
270 271 7.592938 TCATTTTTGTGTGTGGATGATTCTAC 58.407 34.615 0.00 0.00 34.15 2.59
271 272 6.951062 TTTTTGTGTGTGGATGATTCTACA 57.049 33.333 0.00 0.00 40.61 2.74
272 273 7.523293 TTTTTGTGTGTGGATGATTCTACAT 57.477 32.000 0.00 0.00 44.03 2.29
273 274 6.499234 TTTGTGTGTGGATGATTCTACATG 57.501 37.500 0.00 0.00 44.03 3.21
274 275 4.516323 TGTGTGTGGATGATTCTACATGG 58.484 43.478 0.00 0.00 44.03 3.66
275 276 4.224818 TGTGTGTGGATGATTCTACATGGA 59.775 41.667 0.00 0.00 44.03 3.41
276 277 5.185454 GTGTGTGGATGATTCTACATGGAA 58.815 41.667 0.00 0.00 44.03 3.53
277 278 5.824624 GTGTGTGGATGATTCTACATGGAAT 59.175 40.000 0.00 0.00 44.03 3.01
278 279 6.992123 GTGTGTGGATGATTCTACATGGAATA 59.008 38.462 0.00 0.00 44.03 1.75
279 280 7.498900 GTGTGTGGATGATTCTACATGGAATAA 59.501 37.037 0.00 0.00 44.03 1.40
280 281 8.219868 TGTGTGGATGATTCTACATGGAATAAT 58.780 33.333 0.00 0.00 44.03 1.28
281 282 9.071276 GTGTGGATGATTCTACATGGAATAATT 57.929 33.333 0.00 0.00 44.03 1.40
282 283 9.288576 TGTGGATGATTCTACATGGAATAATTC 57.711 33.333 0.00 0.00 38.31 2.17
283 284 8.446273 GTGGATGATTCTACATGGAATAATTCG 58.554 37.037 0.00 0.00 36.24 3.34
284 285 8.374743 TGGATGATTCTACATGGAATAATTCGA 58.625 33.333 0.00 0.00 36.24 3.71
285 286 8.660373 GGATGATTCTACATGGAATAATTCGAC 58.340 37.037 0.00 0.00 36.24 4.20
286 287 9.429359 GATGATTCTACATGGAATAATTCGACT 57.571 33.333 0.00 0.00 36.24 4.18
287 288 8.593492 TGATTCTACATGGAATAATTCGACTG 57.407 34.615 0.00 0.00 36.24 3.51
288 289 8.421002 TGATTCTACATGGAATAATTCGACTGA 58.579 33.333 0.00 0.00 36.24 3.41
289 290 8.824159 ATTCTACATGGAATAATTCGACTGAG 57.176 34.615 0.00 0.00 34.59 3.35
290 291 6.749139 TCTACATGGAATAATTCGACTGAGG 58.251 40.000 0.00 0.00 0.00 3.86
291 292 5.359194 ACATGGAATAATTCGACTGAGGT 57.641 39.130 0.00 0.00 0.00 3.85
292 293 5.360591 ACATGGAATAATTCGACTGAGGTC 58.639 41.667 0.00 0.00 38.97 3.85
293 294 5.104941 ACATGGAATAATTCGACTGAGGTCA 60.105 40.000 0.00 0.00 42.21 4.02
294 295 5.414789 TGGAATAATTCGACTGAGGTCAA 57.585 39.130 0.00 0.00 42.21 3.18
295 296 5.175859 TGGAATAATTCGACTGAGGTCAAC 58.824 41.667 0.00 0.00 42.21 3.18
296 297 5.175859 GGAATAATTCGACTGAGGTCAACA 58.824 41.667 0.00 0.00 42.21 3.33
297 298 5.817816 GGAATAATTCGACTGAGGTCAACAT 59.182 40.000 0.00 0.00 42.21 2.71
298 299 6.018669 GGAATAATTCGACTGAGGTCAACATC 60.019 42.308 0.00 0.00 42.21 3.06
299 300 2.347697 TTCGACTGAGGTCAACATCG 57.652 50.000 0.00 0.00 42.21 3.84
300 301 1.530323 TCGACTGAGGTCAACATCGA 58.470 50.000 6.57 6.57 42.21 3.59
301 302 2.092323 TCGACTGAGGTCAACATCGAT 58.908 47.619 0.00 0.00 42.21 3.59
302 303 3.275999 TCGACTGAGGTCAACATCGATA 58.724 45.455 0.00 0.00 42.21 2.92
303 304 3.692593 TCGACTGAGGTCAACATCGATAA 59.307 43.478 0.00 0.00 42.21 1.75
304 305 4.157105 TCGACTGAGGTCAACATCGATAAA 59.843 41.667 0.00 0.00 42.21 1.40
305 306 4.265556 CGACTGAGGTCAACATCGATAAAC 59.734 45.833 0.00 0.00 42.21 2.01
306 307 5.147330 ACTGAGGTCAACATCGATAAACA 57.853 39.130 0.00 0.00 0.00 2.83
307 308 5.171476 ACTGAGGTCAACATCGATAAACAG 58.829 41.667 0.00 2.81 0.00 3.16
308 309 4.503910 TGAGGTCAACATCGATAAACAGG 58.496 43.478 0.00 0.00 0.00 4.00
309 310 3.270877 AGGTCAACATCGATAAACAGGC 58.729 45.455 0.00 0.00 0.00 4.85
310 311 3.006940 GGTCAACATCGATAAACAGGCA 58.993 45.455 0.00 0.00 0.00 4.75
311 312 3.627577 GGTCAACATCGATAAACAGGCAT 59.372 43.478 0.00 0.00 0.00 4.40
312 313 4.814234 GGTCAACATCGATAAACAGGCATA 59.186 41.667 0.00 0.00 0.00 3.14
313 314 5.470098 GGTCAACATCGATAAACAGGCATAT 59.530 40.000 0.00 0.00 0.00 1.78
314 315 6.017109 GGTCAACATCGATAAACAGGCATATT 60.017 38.462 0.00 0.00 0.00 1.28
315 316 6.852853 GTCAACATCGATAAACAGGCATATTG 59.147 38.462 0.00 0.00 0.00 1.90
316 317 5.947228 ACATCGATAAACAGGCATATTGG 57.053 39.130 0.00 0.00 0.00 3.16
317 318 5.376625 ACATCGATAAACAGGCATATTGGT 58.623 37.500 0.00 0.00 0.00 3.67
318 319 6.530120 ACATCGATAAACAGGCATATTGGTA 58.470 36.000 0.00 0.00 0.00 3.25
319 320 6.995686 ACATCGATAAACAGGCATATTGGTAA 59.004 34.615 0.00 0.00 0.00 2.85
320 321 7.665559 ACATCGATAAACAGGCATATTGGTAAT 59.334 33.333 0.00 0.00 0.00 1.89
321 322 7.433708 TCGATAAACAGGCATATTGGTAATG 57.566 36.000 0.00 0.00 0.00 1.90
322 323 7.220740 TCGATAAACAGGCATATTGGTAATGA 58.779 34.615 0.00 0.00 0.00 2.57
323 324 7.172532 TCGATAAACAGGCATATTGGTAATGAC 59.827 37.037 0.00 0.00 32.10 3.06
324 325 5.499139 AAACAGGCATATTGGTAATGACG 57.501 39.130 0.00 0.00 37.44 4.35
325 326 3.476552 ACAGGCATATTGGTAATGACGG 58.523 45.455 0.00 0.00 37.44 4.79
326 327 3.118038 ACAGGCATATTGGTAATGACGGT 60.118 43.478 0.00 0.00 37.44 4.83
327 328 3.250762 CAGGCATATTGGTAATGACGGTG 59.749 47.826 0.00 0.00 37.44 4.94
328 329 2.031157 GGCATATTGGTAATGACGGTGC 60.031 50.000 0.00 0.00 0.00 5.01
329 330 2.616376 GCATATTGGTAATGACGGTGCA 59.384 45.455 0.00 0.00 0.00 4.57
330 331 3.253188 GCATATTGGTAATGACGGTGCAT 59.747 43.478 0.00 0.00 0.00 3.96
331 332 4.786507 CATATTGGTAATGACGGTGCATG 58.213 43.478 0.00 0.00 0.00 4.06
332 333 2.192664 TTGGTAATGACGGTGCATGT 57.807 45.000 0.00 0.00 0.00 3.21
333 334 2.192664 TGGTAATGACGGTGCATGTT 57.807 45.000 0.00 0.00 0.00 2.71
334 335 2.080693 TGGTAATGACGGTGCATGTTC 58.919 47.619 0.00 0.00 0.00 3.18
335 336 1.400494 GGTAATGACGGTGCATGTTCC 59.600 52.381 0.00 0.00 0.00 3.62
336 337 2.080693 GTAATGACGGTGCATGTTCCA 58.919 47.619 0.00 0.00 0.00 3.53
337 338 1.838112 AATGACGGTGCATGTTCCAT 58.162 45.000 0.00 0.00 0.00 3.41
338 339 2.708216 ATGACGGTGCATGTTCCATA 57.292 45.000 0.00 0.00 0.00 2.74
339 340 2.708216 TGACGGTGCATGTTCCATAT 57.292 45.000 0.00 0.00 0.00 1.78
340 341 2.287769 TGACGGTGCATGTTCCATATG 58.712 47.619 0.00 0.00 0.00 1.78
341 342 2.288666 GACGGTGCATGTTCCATATGT 58.711 47.619 1.24 0.00 0.00 2.29
342 343 2.287915 GACGGTGCATGTTCCATATGTC 59.712 50.000 1.24 0.00 0.00 3.06
343 344 2.287769 CGGTGCATGTTCCATATGTCA 58.712 47.619 1.24 0.00 0.00 3.58
344 345 2.032054 CGGTGCATGTTCCATATGTCAC 59.968 50.000 1.24 0.00 34.65 3.67
345 346 2.358898 GGTGCATGTTCCATATGTCACC 59.641 50.000 1.24 12.33 41.16 4.02
346 347 3.016031 GTGCATGTTCCATATGTCACCA 58.984 45.455 1.24 0.00 31.98 4.17
347 348 3.443329 GTGCATGTTCCATATGTCACCAA 59.557 43.478 1.24 0.00 31.98 3.67
348 349 3.695556 TGCATGTTCCATATGTCACCAAG 59.304 43.478 1.24 0.00 0.00 3.61
349 350 3.067180 GCATGTTCCATATGTCACCAAGG 59.933 47.826 1.24 0.00 0.00 3.61
350 351 3.364460 TGTTCCATATGTCACCAAGGG 57.636 47.619 1.24 0.00 0.00 3.95
351 352 2.025416 TGTTCCATATGTCACCAAGGGG 60.025 50.000 1.24 0.00 41.29 4.79
352 353 0.550914 TCCATATGTCACCAAGGGGC 59.449 55.000 1.24 0.00 37.90 5.80
353 354 0.468029 CCATATGTCACCAAGGGGCC 60.468 60.000 0.00 0.00 37.90 5.80
354 355 0.819259 CATATGTCACCAAGGGGCCG 60.819 60.000 0.00 0.00 37.90 6.13
355 356 0.986019 ATATGTCACCAAGGGGCCGA 60.986 55.000 0.00 0.00 37.90 5.54
356 357 1.622607 TATGTCACCAAGGGGCCGAG 61.623 60.000 0.00 0.00 37.90 4.63
357 358 4.410400 GTCACCAAGGGGCCGAGG 62.410 72.222 0.00 1.08 37.90 4.63
358 359 4.649705 TCACCAAGGGGCCGAGGA 62.650 66.667 13.59 0.00 37.90 3.71
359 360 3.411517 CACCAAGGGGCCGAGGAT 61.412 66.667 13.59 0.00 37.90 3.24
360 361 3.411517 ACCAAGGGGCCGAGGATG 61.412 66.667 13.59 0.77 37.90 3.51
361 362 3.411517 CCAAGGGGCCGAGGATGT 61.412 66.667 0.00 0.00 0.00 3.06
362 363 2.677228 CAAGGGGCCGAGGATGTT 59.323 61.111 0.00 0.00 0.00 2.71
363 364 1.452108 CAAGGGGCCGAGGATGTTC 60.452 63.158 0.00 0.00 0.00 3.18
364 365 3.031417 AAGGGGCCGAGGATGTTCG 62.031 63.158 0.00 0.00 40.18 3.95
370 371 3.474806 CGAGGATGTTCGGCACAC 58.525 61.111 0.00 0.00 38.61 3.82
457 464 4.923942 CATGCCTCCATCGCCGCT 62.924 66.667 0.00 0.00 0.00 5.52
520 527 1.739338 CGAGGGAGGCGCTCTACATT 61.739 60.000 7.64 0.00 40.57 2.71
557 564 2.270205 CAGCACGGCCTCCTCAAT 59.730 61.111 0.00 0.00 0.00 2.57
607 614 2.125106 AGCGTTTCCTCGGATGGC 60.125 61.111 0.00 0.00 0.00 4.40
610 617 2.435938 GTTTCCTCGGATGGCGCA 60.436 61.111 10.83 0.00 0.00 6.09
611 618 1.819632 GTTTCCTCGGATGGCGCAT 60.820 57.895 10.83 0.00 0.00 4.73
691 705 2.829458 CCGTCTCTCCGGGGAGTC 60.829 72.222 30.38 23.87 44.32 3.36
694 708 1.000612 GTCTCTCCGGGGAGTCCTT 59.999 63.158 30.38 0.00 42.49 3.36
811 843 3.283684 CGGTGGCGCAAGGAAACA 61.284 61.111 10.83 0.00 38.28 2.83
911 946 5.171339 ACTACATGCAGAACCTCATCTTT 57.829 39.130 0.00 0.00 0.00 2.52
961 996 2.372690 CCGACGAGACACAAAGCCG 61.373 63.158 0.00 0.00 0.00 5.52
1060 1149 1.901948 AGCCACGAGTTCTCGGACA 60.902 57.895 22.90 0.00 37.45 4.02
1067 1156 1.462283 CGAGTTCTCGGACAACTACGA 59.538 52.381 13.52 0.00 34.10 3.43
1150 1239 1.294138 CAAACCGCCGGTCCTAAGA 59.706 57.895 10.32 0.00 33.12 2.10
1163 1252 1.271379 TCCTAAGACGAAGCGCAAGAA 59.729 47.619 11.47 0.00 43.02 2.52
1228 1317 1.959899 GCGAGTGTTGGCGAGACATG 61.960 60.000 4.68 0.00 0.00 3.21
1260 1350 0.889186 AAGACCAGCGCCGAACAAAT 60.889 50.000 2.29 0.00 0.00 2.32
1279 1369 7.193377 ACAAATGCATTCAACTTTTTGGATC 57.807 32.000 13.38 0.00 26.96 3.36
1320 1410 1.230324 GAGCGCAAGAAGTTTCCACT 58.770 50.000 11.47 0.00 43.02 4.00
1330 1420 6.420903 GCAAGAAGTTTCCACTTTACCAAATC 59.579 38.462 0.00 0.00 43.79 2.17
1363 1453 1.552254 GGGTGGGTGTCCATTTCCAAT 60.552 52.381 0.00 0.00 46.09 3.16
1666 1767 2.096013 GGAGAAGTTCAAGGCGCAATAC 59.904 50.000 10.83 0.00 0.00 1.89
1692 1795 1.614317 CCTCAAGTCACATGGGGGAAC 60.614 57.143 0.00 0.00 34.60 3.62
1842 1946 1.022903 AGGACTCAAGGGAGGAGGAT 58.977 55.000 0.00 0.00 45.81 3.24
1913 2017 0.616111 AGGAGGCTTGAGATGGACGT 60.616 55.000 0.00 0.00 0.00 4.34
1926 2030 1.004440 GGACGTGGAGAAGCAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
2033 2137 0.101219 CTCACGAGCATGATGACCGA 59.899 55.000 12.42 0.00 0.00 4.69
2038 2142 0.461548 GAGCATGATGACCGAGGTGA 59.538 55.000 0.00 0.00 0.00 4.02
2046 2150 4.215109 TGATGACCGAGGTGAAGATCATA 58.785 43.478 0.00 0.00 0.00 2.15
2082 2186 1.289066 CGTGTCGCCAAGGAAGAGA 59.711 57.895 0.00 0.00 0.00 3.10
2101 2205 0.966920 ACCGTGGTTCGAGAAGATGT 59.033 50.000 0.00 0.00 42.86 3.06
2215 2322 3.115892 GCGATGGCGTGGTCGAAA 61.116 61.111 9.11 0.00 40.11 3.46
2353 2467 1.560611 TGGCATGATGAGACATGGTCA 59.439 47.619 0.00 0.00 45.14 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.762933 CCGAACATCAATGGGATTAAAAATAAT 57.237 29.630 0.00 0.00 32.57 1.28
13 14 8.972127 TCCGAACATCAATGGGATTAAAAATAA 58.028 29.630 0.00 0.00 32.57 1.40
14 15 8.526667 TCCGAACATCAATGGGATTAAAAATA 57.473 30.769 0.00 0.00 32.57 1.40
15 16 7.341769 TCTCCGAACATCAATGGGATTAAAAAT 59.658 33.333 0.00 0.00 32.57 1.82
16 17 6.661377 TCTCCGAACATCAATGGGATTAAAAA 59.339 34.615 0.00 0.00 32.57 1.94
17 18 6.184068 TCTCCGAACATCAATGGGATTAAAA 58.816 36.000 0.00 0.00 32.57 1.52
18 19 5.750524 TCTCCGAACATCAATGGGATTAAA 58.249 37.500 0.00 0.00 32.57 1.52
19 20 5.366482 TCTCCGAACATCAATGGGATTAA 57.634 39.130 0.00 0.00 32.57 1.40
20 21 5.366482 TTCTCCGAACATCAATGGGATTA 57.634 39.130 0.00 0.00 32.57 1.75
21 22 3.931907 TCTCCGAACATCAATGGGATT 57.068 42.857 0.00 0.00 32.57 3.01
22 23 3.931907 TTCTCCGAACATCAATGGGAT 57.068 42.857 0.00 0.00 36.39 3.85
23 24 3.199727 TGATTCTCCGAACATCAATGGGA 59.800 43.478 0.00 0.00 0.00 4.37
24 25 3.544684 TGATTCTCCGAACATCAATGGG 58.455 45.455 0.00 0.00 0.00 4.00
25 26 4.023450 CCATGATTCTCCGAACATCAATGG 60.023 45.833 0.00 0.00 30.79 3.16
26 27 4.818005 TCCATGATTCTCCGAACATCAATG 59.182 41.667 0.00 0.00 30.79 2.82
27 28 5.039920 TCCATGATTCTCCGAACATCAAT 57.960 39.130 0.00 0.00 30.79 2.57
28 29 4.486125 TCCATGATTCTCCGAACATCAA 57.514 40.909 0.00 0.00 30.79 2.57
29 30 4.486125 TTCCATGATTCTCCGAACATCA 57.514 40.909 0.00 0.00 0.00 3.07
30 31 6.382869 AATTTCCATGATTCTCCGAACATC 57.617 37.500 0.00 0.00 0.00 3.06
31 32 5.300286 GGAATTTCCATGATTCTCCGAACAT 59.700 40.000 10.67 0.00 36.28 2.71
32 33 4.640201 GGAATTTCCATGATTCTCCGAACA 59.360 41.667 10.67 0.00 36.28 3.18
33 34 4.884164 AGGAATTTCCATGATTCTCCGAAC 59.116 41.667 17.57 0.00 39.61 3.95
34 35 5.104360 AGAGGAATTTCCATGATTCTCCGAA 60.104 40.000 17.57 0.00 39.61 4.30
35 36 4.410228 AGAGGAATTTCCATGATTCTCCGA 59.590 41.667 17.57 0.00 39.61 4.55
36 37 4.712476 AGAGGAATTTCCATGATTCTCCG 58.288 43.478 17.57 0.00 39.61 4.63
37 38 7.777440 AGTTTAGAGGAATTTCCATGATTCTCC 59.223 37.037 17.57 3.86 39.61 3.71
38 39 8.744568 AGTTTAGAGGAATTTCCATGATTCTC 57.255 34.615 17.57 4.57 39.61 2.87
39 40 9.539194 AAAGTTTAGAGGAATTTCCATGATTCT 57.461 29.630 17.57 12.56 39.61 2.40
40 41 9.794685 GAAAGTTTAGAGGAATTTCCATGATTC 57.205 33.333 17.57 5.94 39.61 2.52
41 42 9.312904 TGAAAGTTTAGAGGAATTTCCATGATT 57.687 29.630 17.57 0.00 39.61 2.57
42 43 8.884124 TGAAAGTTTAGAGGAATTTCCATGAT 57.116 30.769 17.57 3.08 39.61 2.45
43 44 8.742777 CATGAAAGTTTAGAGGAATTTCCATGA 58.257 33.333 17.57 0.08 39.61 3.07
44 45 7.490402 GCATGAAAGTTTAGAGGAATTTCCATG 59.510 37.037 17.57 8.48 39.61 3.66
45 46 7.178983 TGCATGAAAGTTTAGAGGAATTTCCAT 59.821 33.333 17.57 8.13 39.61 3.41
46 47 6.493115 TGCATGAAAGTTTAGAGGAATTTCCA 59.507 34.615 17.57 0.00 39.61 3.53
47 48 6.924111 TGCATGAAAGTTTAGAGGAATTTCC 58.076 36.000 7.39 7.39 36.58 3.13
48 49 8.992835 AATGCATGAAAGTTTAGAGGAATTTC 57.007 30.769 0.00 0.00 0.00 2.17
52 53 9.859427 CATTAAATGCATGAAAGTTTAGAGGAA 57.141 29.630 0.00 0.00 0.00 3.36
53 54 9.241919 TCATTAAATGCATGAAAGTTTAGAGGA 57.758 29.630 0.00 0.00 0.00 3.71
54 55 9.294030 GTCATTAAATGCATGAAAGTTTAGAGG 57.706 33.333 0.00 0.00 32.37 3.69
59 60 9.715121 ATGAAGTCATTAAATGCATGAAAGTTT 57.285 25.926 0.00 0.00 32.37 2.66
60 61 9.715121 AATGAAGTCATTAAATGCATGAAAGTT 57.285 25.926 0.00 0.00 44.09 2.66
61 62 9.146984 CAATGAAGTCATTAAATGCATGAAAGT 57.853 29.630 0.00 0.00 44.10 2.66
62 63 8.114290 GCAATGAAGTCATTAAATGCATGAAAG 58.886 33.333 0.00 0.00 44.10 2.62
63 64 7.820386 AGCAATGAAGTCATTAAATGCATGAAA 59.180 29.630 14.79 0.00 44.10 2.69
64 65 7.324935 AGCAATGAAGTCATTAAATGCATGAA 58.675 30.769 14.79 0.00 44.10 2.57
65 66 6.869695 AGCAATGAAGTCATTAAATGCATGA 58.130 32.000 14.79 0.00 44.10 3.07
66 67 7.398746 CAAGCAATGAAGTCATTAAATGCATG 58.601 34.615 14.79 10.67 44.10 4.06
67 68 6.537301 CCAAGCAATGAAGTCATTAAATGCAT 59.463 34.615 14.79 0.00 44.10 3.96
68 69 5.870433 CCAAGCAATGAAGTCATTAAATGCA 59.130 36.000 14.79 0.00 44.10 3.96
69 70 5.220529 GCCAAGCAATGAAGTCATTAAATGC 60.221 40.000 6.22 6.86 44.10 3.56
70 71 5.870433 TGCCAAGCAATGAAGTCATTAAATG 59.130 36.000 6.22 5.89 44.10 2.32
71 72 5.870978 GTGCCAAGCAATGAAGTCATTAAAT 59.129 36.000 6.22 0.00 44.10 1.40
72 73 5.229423 GTGCCAAGCAATGAAGTCATTAAA 58.771 37.500 6.22 0.00 44.10 1.52
73 74 4.321899 GGTGCCAAGCAATGAAGTCATTAA 60.322 41.667 6.22 0.00 44.10 1.40
74 75 3.193267 GGTGCCAAGCAATGAAGTCATTA 59.807 43.478 6.22 0.00 44.10 1.90
75 76 2.028748 GGTGCCAAGCAATGAAGTCATT 60.029 45.455 0.54 0.54 46.62 2.57
76 77 1.547372 GGTGCCAAGCAATGAAGTCAT 59.453 47.619 0.00 0.00 41.47 3.06
77 78 0.961019 GGTGCCAAGCAATGAAGTCA 59.039 50.000 0.00 0.00 41.47 3.41
78 79 0.244721 GGGTGCCAAGCAATGAAGTC 59.755 55.000 0.00 0.00 41.47 3.01
79 80 0.469705 TGGGTGCCAAGCAATGAAGT 60.470 50.000 0.00 0.00 41.47 3.01
80 81 0.245539 CTGGGTGCCAAGCAATGAAG 59.754 55.000 0.00 0.00 41.47 3.02
81 82 0.178967 TCTGGGTGCCAAGCAATGAA 60.179 50.000 0.00 0.00 41.47 2.57
82 83 0.040058 ATCTGGGTGCCAAGCAATGA 59.960 50.000 0.00 0.00 41.47 2.57
83 84 0.458669 GATCTGGGTGCCAAGCAATG 59.541 55.000 0.00 0.00 41.47 2.82
84 85 0.040058 TGATCTGGGTGCCAAGCAAT 59.960 50.000 0.00 0.00 41.47 3.56
85 86 0.895100 GTGATCTGGGTGCCAAGCAA 60.895 55.000 0.00 0.00 41.47 3.91
86 87 1.303561 GTGATCTGGGTGCCAAGCA 60.304 57.895 0.00 0.00 35.60 3.91
87 88 0.895100 TTGTGATCTGGGTGCCAAGC 60.895 55.000 0.00 0.00 30.80 4.01
88 89 1.171308 CTTGTGATCTGGGTGCCAAG 58.829 55.000 0.00 0.00 30.80 3.61
89 90 0.251297 CCTTGTGATCTGGGTGCCAA 60.251 55.000 0.00 0.00 30.80 4.52
90 91 1.379916 CCTTGTGATCTGGGTGCCA 59.620 57.895 0.00 0.00 0.00 4.92
91 92 1.379044 CCCTTGTGATCTGGGTGCC 60.379 63.158 0.00 0.00 36.32 5.01
92 93 4.326255 CCCTTGTGATCTGGGTGC 57.674 61.111 0.00 0.00 36.32 5.01
95 96 2.292828 AAACACCCTTGTGATCTGGG 57.707 50.000 10.60 10.60 45.76 4.45
96 97 3.636300 TGAAAAACACCCTTGTGATCTGG 59.364 43.478 0.00 0.00 45.76 3.86
97 98 4.339247 ACTGAAAAACACCCTTGTGATCTG 59.661 41.667 0.00 0.60 45.76 2.90
98 99 4.536765 ACTGAAAAACACCCTTGTGATCT 58.463 39.130 0.00 0.00 45.76 2.75
99 100 4.261614 GGACTGAAAAACACCCTTGTGATC 60.262 45.833 0.00 0.00 45.76 2.92
100 101 3.636764 GGACTGAAAAACACCCTTGTGAT 59.363 43.478 0.00 0.00 45.76 3.06
101 102 3.020984 GGACTGAAAAACACCCTTGTGA 58.979 45.455 0.00 0.00 45.76 3.58
103 104 2.021457 CGGACTGAAAAACACCCTTGT 58.979 47.619 0.00 0.00 37.67 3.16
104 105 1.336755 CCGGACTGAAAAACACCCTTG 59.663 52.381 0.00 0.00 0.00 3.61
105 106 1.213430 TCCGGACTGAAAAACACCCTT 59.787 47.619 0.00 0.00 0.00 3.95
106 107 0.841289 TCCGGACTGAAAAACACCCT 59.159 50.000 0.00 0.00 0.00 4.34
107 108 1.905637 ATCCGGACTGAAAAACACCC 58.094 50.000 6.12 0.00 0.00 4.61
108 109 2.607038 GCAATCCGGACTGAAAAACACC 60.607 50.000 18.85 0.00 0.00 4.16
109 110 2.661594 GCAATCCGGACTGAAAAACAC 58.338 47.619 18.85 0.00 0.00 3.32
110 111 1.265635 CGCAATCCGGACTGAAAAACA 59.734 47.619 18.85 0.00 0.00 2.83
111 112 1.265905 ACGCAATCCGGACTGAAAAAC 59.734 47.619 18.85 0.00 42.52 2.43
112 113 1.600023 ACGCAATCCGGACTGAAAAA 58.400 45.000 18.85 0.00 42.52 1.94
113 114 2.459060 TACGCAATCCGGACTGAAAA 57.541 45.000 18.85 0.00 42.52 2.29
120 121 1.606994 GCATATGGTACGCAATCCGGA 60.607 52.381 6.61 6.61 42.52 5.14
121 122 0.796312 GCATATGGTACGCAATCCGG 59.204 55.000 4.56 0.00 42.52 5.14
122 123 1.460743 CTGCATATGGTACGCAATCCG 59.539 52.381 4.56 0.00 44.21 4.18
123 124 2.494059 ACTGCATATGGTACGCAATCC 58.506 47.619 4.56 0.00 34.75 3.01
124 125 4.552166 AAACTGCATATGGTACGCAATC 57.448 40.909 4.56 0.00 34.75 2.67
125 126 4.878971 TGTAAACTGCATATGGTACGCAAT 59.121 37.500 4.56 0.00 34.75 3.56
126 127 4.093703 GTGTAAACTGCATATGGTACGCAA 59.906 41.667 4.56 0.00 34.75 4.85
127 128 3.619483 GTGTAAACTGCATATGGTACGCA 59.381 43.478 4.56 0.00 0.00 5.24
128 129 3.869246 AGTGTAAACTGCATATGGTACGC 59.131 43.478 4.56 0.00 0.00 4.42
129 130 5.348986 AGAGTGTAAACTGCATATGGTACG 58.651 41.667 4.56 0.00 0.00 3.67
130 131 7.201617 GGAAAGAGTGTAAACTGCATATGGTAC 60.202 40.741 4.56 0.00 0.00 3.34
131 132 6.821665 GGAAAGAGTGTAAACTGCATATGGTA 59.178 38.462 4.56 0.00 0.00 3.25
132 133 5.648092 GGAAAGAGTGTAAACTGCATATGGT 59.352 40.000 4.56 0.00 0.00 3.55
133 134 5.220662 CGGAAAGAGTGTAAACTGCATATGG 60.221 44.000 4.56 0.00 0.00 2.74
134 135 5.220662 CCGGAAAGAGTGTAAACTGCATATG 60.221 44.000 0.00 0.00 0.00 1.78
135 136 4.876107 CCGGAAAGAGTGTAAACTGCATAT 59.124 41.667 0.00 0.00 0.00 1.78
136 137 4.250464 CCGGAAAGAGTGTAAACTGCATA 58.750 43.478 0.00 0.00 0.00 3.14
137 138 3.074412 CCGGAAAGAGTGTAAACTGCAT 58.926 45.455 0.00 0.00 0.00 3.96
138 139 2.489971 CCGGAAAGAGTGTAAACTGCA 58.510 47.619 0.00 0.00 0.00 4.41
139 140 1.197036 GCCGGAAAGAGTGTAAACTGC 59.803 52.381 5.05 0.00 0.00 4.40
140 141 2.480419 CAGCCGGAAAGAGTGTAAACTG 59.520 50.000 5.05 0.00 0.00 3.16
141 142 2.767505 CAGCCGGAAAGAGTGTAAACT 58.232 47.619 5.05 0.00 0.00 2.66
142 143 1.197036 GCAGCCGGAAAGAGTGTAAAC 59.803 52.381 5.05 0.00 0.00 2.01
143 144 1.202710 TGCAGCCGGAAAGAGTGTAAA 60.203 47.619 5.05 0.00 0.00 2.01
144 145 0.394938 TGCAGCCGGAAAGAGTGTAA 59.605 50.000 5.05 0.00 0.00 2.41
145 146 0.613260 ATGCAGCCGGAAAGAGTGTA 59.387 50.000 5.05 0.00 0.00 2.90
146 147 0.957395 CATGCAGCCGGAAAGAGTGT 60.957 55.000 5.05 0.00 0.00 3.55
147 148 1.798735 CATGCAGCCGGAAAGAGTG 59.201 57.895 5.05 0.00 0.00 3.51
148 149 2.042831 GCATGCAGCCGGAAAGAGT 61.043 57.895 14.21 0.00 37.23 3.24
149 150 1.588824 TTGCATGCAGCCGGAAAGAG 61.589 55.000 21.50 0.00 44.83 2.85
150 151 1.177895 TTTGCATGCAGCCGGAAAGA 61.178 50.000 21.50 0.00 44.83 2.52
151 152 1.010419 GTTTGCATGCAGCCGGAAAG 61.010 55.000 21.50 0.00 44.83 2.62
152 153 1.006337 GTTTGCATGCAGCCGGAAA 60.006 52.632 21.50 8.38 44.83 3.13
153 154 1.462731 AAGTTTGCATGCAGCCGGAA 61.463 50.000 21.50 9.17 44.83 4.30
154 155 1.902918 AAGTTTGCATGCAGCCGGA 60.903 52.632 21.50 2.08 44.83 5.14
155 156 1.735198 CAAGTTTGCATGCAGCCGG 60.735 57.895 21.50 7.23 44.83 6.13
156 157 0.108992 ATCAAGTTTGCATGCAGCCG 60.109 50.000 21.50 11.70 44.83 5.52
157 158 1.355971 CATCAAGTTTGCATGCAGCC 58.644 50.000 21.50 14.96 44.83 4.85
158 159 1.067425 TCCATCAAGTTTGCATGCAGC 60.067 47.619 21.50 17.27 45.96 5.25
159 160 3.306917 TTCCATCAAGTTTGCATGCAG 57.693 42.857 21.50 9.09 0.00 4.41
160 161 3.007074 ACATTCCATCAAGTTTGCATGCA 59.993 39.130 18.46 18.46 0.00 3.96
161 162 3.592059 ACATTCCATCAAGTTTGCATGC 58.408 40.909 11.82 11.82 0.00 4.06
162 163 4.862574 CAGACATTCCATCAAGTTTGCATG 59.137 41.667 0.00 0.00 0.00 4.06
163 164 4.081862 CCAGACATTCCATCAAGTTTGCAT 60.082 41.667 0.00 0.00 0.00 3.96
164 165 3.256383 CCAGACATTCCATCAAGTTTGCA 59.744 43.478 0.00 0.00 0.00 4.08
165 166 3.367703 CCCAGACATTCCATCAAGTTTGC 60.368 47.826 0.00 0.00 0.00 3.68
166 167 4.081406 TCCCAGACATTCCATCAAGTTTG 58.919 43.478 0.00 0.00 0.00 2.93
167 168 4.338879 CTCCCAGACATTCCATCAAGTTT 58.661 43.478 0.00 0.00 0.00 2.66
168 169 3.308688 CCTCCCAGACATTCCATCAAGTT 60.309 47.826 0.00 0.00 0.00 2.66
169 170 2.240667 CCTCCCAGACATTCCATCAAGT 59.759 50.000 0.00 0.00 0.00 3.16
170 171 2.928334 CCTCCCAGACATTCCATCAAG 58.072 52.381 0.00 0.00 0.00 3.02
171 172 1.064463 GCCTCCCAGACATTCCATCAA 60.064 52.381 0.00 0.00 0.00 2.57
172 173 0.548031 GCCTCCCAGACATTCCATCA 59.452 55.000 0.00 0.00 0.00 3.07
173 174 0.179006 GGCCTCCCAGACATTCCATC 60.179 60.000 0.00 0.00 0.00 3.51
174 175 1.649271 GGGCCTCCCAGACATTCCAT 61.649 60.000 0.84 0.00 44.65 3.41
175 176 2.308722 GGGCCTCCCAGACATTCCA 61.309 63.158 0.84 0.00 44.65 3.53
176 177 2.597903 GGGCCTCCCAGACATTCC 59.402 66.667 0.84 0.00 44.65 3.01
185 186 1.627297 CCAGTGAACTAGGGCCTCCC 61.627 65.000 10.74 0.00 45.90 4.30
186 187 1.908483 CCAGTGAACTAGGGCCTCC 59.092 63.158 10.74 0.00 0.00 4.30
187 188 1.222113 GCCAGTGAACTAGGGCCTC 59.778 63.158 10.74 0.00 40.55 4.70
188 189 3.404773 GCCAGTGAACTAGGGCCT 58.595 61.111 12.58 12.58 40.55 5.19
190 191 1.679898 ACAGCCAGTGAACTAGGGC 59.320 57.895 4.09 4.09 46.77 5.19
200 201 2.553028 CCAAATACTCCACACAGCCAGT 60.553 50.000 0.00 0.00 0.00 4.00
201 202 2.086869 CCAAATACTCCACACAGCCAG 58.913 52.381 0.00 0.00 0.00 4.85
202 203 1.702401 TCCAAATACTCCACACAGCCA 59.298 47.619 0.00 0.00 0.00 4.75
203 204 2.489938 TCCAAATACTCCACACAGCC 57.510 50.000 0.00 0.00 0.00 4.85
204 205 3.821033 AGTTTCCAAATACTCCACACAGC 59.179 43.478 0.00 0.00 0.00 4.40
205 206 5.063204 TGAGTTTCCAAATACTCCACACAG 58.937 41.667 0.00 0.00 40.00 3.66
206 207 5.042463 TGAGTTTCCAAATACTCCACACA 57.958 39.130 0.00 0.00 40.00 3.72
207 208 5.763204 TCTTGAGTTTCCAAATACTCCACAC 59.237 40.000 0.00 0.00 40.00 3.82
208 209 5.935945 TCTTGAGTTTCCAAATACTCCACA 58.064 37.500 0.00 0.00 40.00 4.17
209 210 6.094186 GGATCTTGAGTTTCCAAATACTCCAC 59.906 42.308 0.00 0.00 40.00 4.02
210 211 6.180472 GGATCTTGAGTTTCCAAATACTCCA 58.820 40.000 0.00 0.00 40.00 3.86
211 212 5.590663 GGGATCTTGAGTTTCCAAATACTCC 59.409 44.000 0.00 0.00 40.00 3.85
212 213 6.094186 GTGGGATCTTGAGTTTCCAAATACTC 59.906 42.308 0.00 0.00 40.89 2.59
213 214 5.946377 GTGGGATCTTGAGTTTCCAAATACT 59.054 40.000 0.00 0.00 0.00 2.12
214 215 5.163754 CGTGGGATCTTGAGTTTCCAAATAC 60.164 44.000 0.00 0.00 0.00 1.89
215 216 4.941263 CGTGGGATCTTGAGTTTCCAAATA 59.059 41.667 0.00 0.00 0.00 1.40
216 217 3.758554 CGTGGGATCTTGAGTTTCCAAAT 59.241 43.478 0.00 0.00 0.00 2.32
217 218 3.146066 CGTGGGATCTTGAGTTTCCAAA 58.854 45.455 0.00 0.00 0.00 3.28
218 219 2.778299 CGTGGGATCTTGAGTTTCCAA 58.222 47.619 0.00 0.00 0.00 3.53
219 220 1.610624 GCGTGGGATCTTGAGTTTCCA 60.611 52.381 0.00 0.00 0.00 3.53
220 221 1.087501 GCGTGGGATCTTGAGTTTCC 58.912 55.000 0.00 0.00 0.00 3.13
221 222 1.808411 TGCGTGGGATCTTGAGTTTC 58.192 50.000 0.00 0.00 0.00 2.78
222 223 2.270352 TTGCGTGGGATCTTGAGTTT 57.730 45.000 0.00 0.00 0.00 2.66
223 224 2.154462 CTTTGCGTGGGATCTTGAGTT 58.846 47.619 0.00 0.00 0.00 3.01
224 225 1.072331 ACTTTGCGTGGGATCTTGAGT 59.928 47.619 0.00 0.00 0.00 3.41
225 226 1.813513 ACTTTGCGTGGGATCTTGAG 58.186 50.000 0.00 0.00 0.00 3.02
226 227 2.151202 GAACTTTGCGTGGGATCTTGA 58.849 47.619 0.00 0.00 0.00 3.02
227 228 1.879380 TGAACTTTGCGTGGGATCTTG 59.121 47.619 0.00 0.00 0.00 3.02
228 229 2.270352 TGAACTTTGCGTGGGATCTT 57.730 45.000 0.00 0.00 0.00 2.40
229 230 2.496899 ATGAACTTTGCGTGGGATCT 57.503 45.000 0.00 0.00 0.00 2.75
230 231 3.575965 AAATGAACTTTGCGTGGGATC 57.424 42.857 0.00 0.00 0.00 3.36
231 232 4.057432 CAAAAATGAACTTTGCGTGGGAT 58.943 39.130 0.00 0.00 0.00 3.85
232 233 3.118956 ACAAAAATGAACTTTGCGTGGGA 60.119 39.130 0.00 0.00 37.29 4.37
233 234 3.001127 CACAAAAATGAACTTTGCGTGGG 59.999 43.478 0.00 0.00 37.29 4.61
234 235 3.616379 ACACAAAAATGAACTTTGCGTGG 59.384 39.130 0.00 0.00 37.29 4.94
235 236 4.091220 ACACACAAAAATGAACTTTGCGTG 59.909 37.500 12.46 12.46 45.61 5.34
236 237 4.091220 CACACACAAAAATGAACTTTGCGT 59.909 37.500 0.00 0.00 37.29 5.24
237 238 4.492247 CCACACACAAAAATGAACTTTGCG 60.492 41.667 0.00 0.00 37.29 4.85
238 239 4.629200 TCCACACACAAAAATGAACTTTGC 59.371 37.500 0.00 0.00 37.29 3.68
239 240 6.534436 TCATCCACACACAAAAATGAACTTTG 59.466 34.615 0.00 0.00 39.26 2.77
240 241 6.638610 TCATCCACACACAAAAATGAACTTT 58.361 32.000 0.00 0.00 0.00 2.66
241 242 6.219417 TCATCCACACACAAAAATGAACTT 57.781 33.333 0.00 0.00 0.00 2.66
242 243 5.850557 TCATCCACACACAAAAATGAACT 57.149 34.783 0.00 0.00 0.00 3.01
243 244 6.925165 AGAATCATCCACACACAAAAATGAAC 59.075 34.615 0.00 0.00 0.00 3.18
244 245 7.053316 AGAATCATCCACACACAAAAATGAA 57.947 32.000 0.00 0.00 0.00 2.57
245 246 6.653526 AGAATCATCCACACACAAAAATGA 57.346 33.333 0.00 0.00 0.00 2.57
246 247 7.369607 TGTAGAATCATCCACACACAAAAATG 58.630 34.615 0.00 0.00 0.00 2.32
247 248 7.523293 TGTAGAATCATCCACACACAAAAAT 57.477 32.000 0.00 0.00 0.00 1.82
248 249 6.951062 TGTAGAATCATCCACACACAAAAA 57.049 33.333 0.00 0.00 0.00 1.94
249 250 6.072008 CCATGTAGAATCATCCACACACAAAA 60.072 38.462 0.00 0.00 29.87 2.44
250 251 5.415389 CCATGTAGAATCATCCACACACAAA 59.585 40.000 0.00 0.00 29.87 2.83
251 252 4.943093 CCATGTAGAATCATCCACACACAA 59.057 41.667 0.00 0.00 29.87 3.33
252 253 4.224818 TCCATGTAGAATCATCCACACACA 59.775 41.667 0.00 0.00 29.87 3.72
253 254 4.769688 TCCATGTAGAATCATCCACACAC 58.230 43.478 0.00 0.00 29.87 3.82
254 255 5.434182 TTCCATGTAGAATCATCCACACA 57.566 39.130 0.00 0.00 29.87 3.72
255 256 8.627208 ATTATTCCATGTAGAATCATCCACAC 57.373 34.615 1.03 0.00 37.62 3.82
256 257 9.288576 GAATTATTCCATGTAGAATCATCCACA 57.711 33.333 1.03 0.00 37.62 4.17
257 258 8.446273 CGAATTATTCCATGTAGAATCATCCAC 58.554 37.037 0.00 0.00 37.62 4.02
258 259 8.374743 TCGAATTATTCCATGTAGAATCATCCA 58.625 33.333 0.00 0.00 37.62 3.41
259 260 8.660373 GTCGAATTATTCCATGTAGAATCATCC 58.340 37.037 0.00 0.00 37.62 3.51
260 261 9.429359 AGTCGAATTATTCCATGTAGAATCATC 57.571 33.333 0.00 0.00 37.62 2.92
261 262 9.212641 CAGTCGAATTATTCCATGTAGAATCAT 57.787 33.333 0.00 0.00 37.62 2.45
262 263 8.421002 TCAGTCGAATTATTCCATGTAGAATCA 58.579 33.333 0.00 0.00 37.62 2.57
263 264 8.818141 TCAGTCGAATTATTCCATGTAGAATC 57.182 34.615 0.00 0.00 37.62 2.52
264 265 7.875041 CCTCAGTCGAATTATTCCATGTAGAAT 59.125 37.037 0.00 3.20 39.73 2.40
265 266 7.147724 ACCTCAGTCGAATTATTCCATGTAGAA 60.148 37.037 0.00 0.00 0.00 2.10
266 267 6.323996 ACCTCAGTCGAATTATTCCATGTAGA 59.676 38.462 0.00 0.00 0.00 2.59
267 268 6.516718 ACCTCAGTCGAATTATTCCATGTAG 58.483 40.000 0.00 0.00 0.00 2.74
268 269 6.097696 TGACCTCAGTCGAATTATTCCATGTA 59.902 38.462 0.00 0.00 46.74 2.29
269 270 5.104941 TGACCTCAGTCGAATTATTCCATGT 60.105 40.000 0.00 0.00 46.74 3.21
270 271 5.359756 TGACCTCAGTCGAATTATTCCATG 58.640 41.667 0.00 0.00 46.74 3.66
271 272 5.614324 TGACCTCAGTCGAATTATTCCAT 57.386 39.130 0.00 0.00 46.74 3.41
272 273 5.175859 GTTGACCTCAGTCGAATTATTCCA 58.824 41.667 0.00 0.00 46.74 3.53
273 274 5.175859 TGTTGACCTCAGTCGAATTATTCC 58.824 41.667 0.00 0.00 46.74 3.01
274 275 6.291849 CGATGTTGACCTCAGTCGAATTATTC 60.292 42.308 0.00 0.00 46.74 1.75
275 276 5.520288 CGATGTTGACCTCAGTCGAATTATT 59.480 40.000 0.00 0.00 46.74 1.40
276 277 5.043903 CGATGTTGACCTCAGTCGAATTAT 58.956 41.667 0.00 0.00 46.74 1.28
277 278 4.157105 TCGATGTTGACCTCAGTCGAATTA 59.843 41.667 0.00 0.00 46.74 1.40
278 279 3.056821 TCGATGTTGACCTCAGTCGAATT 60.057 43.478 0.00 0.00 46.74 2.17
279 280 2.492088 TCGATGTTGACCTCAGTCGAAT 59.508 45.455 0.00 0.00 46.74 3.34
280 281 1.883926 TCGATGTTGACCTCAGTCGAA 59.116 47.619 0.00 0.00 46.74 3.71
281 282 1.530323 TCGATGTTGACCTCAGTCGA 58.470 50.000 0.00 0.00 46.74 4.20
282 283 2.568696 ATCGATGTTGACCTCAGTCG 57.431 50.000 0.00 0.00 46.74 4.18
283 284 5.168569 TGTTTATCGATGTTGACCTCAGTC 58.831 41.667 8.54 0.00 43.83 3.51
284 285 5.147330 TGTTTATCGATGTTGACCTCAGT 57.853 39.130 8.54 0.00 0.00 3.41
285 286 4.568359 CCTGTTTATCGATGTTGACCTCAG 59.432 45.833 8.54 5.42 0.00 3.35
286 287 4.503910 CCTGTTTATCGATGTTGACCTCA 58.496 43.478 8.54 0.00 0.00 3.86
287 288 3.309954 GCCTGTTTATCGATGTTGACCTC 59.690 47.826 8.54 0.00 0.00 3.85
288 289 3.270877 GCCTGTTTATCGATGTTGACCT 58.729 45.455 8.54 0.00 0.00 3.85
289 290 3.006940 TGCCTGTTTATCGATGTTGACC 58.993 45.455 8.54 0.00 0.00 4.02
290 291 4.882671 ATGCCTGTTTATCGATGTTGAC 57.117 40.909 8.54 1.99 0.00 3.18
291 292 6.017192 CCAATATGCCTGTTTATCGATGTTGA 60.017 38.462 8.54 0.00 0.00 3.18
292 293 6.144854 CCAATATGCCTGTTTATCGATGTTG 58.855 40.000 8.54 0.00 0.00 3.33
293 294 5.827797 ACCAATATGCCTGTTTATCGATGTT 59.172 36.000 8.54 0.00 0.00 2.71
294 295 5.376625 ACCAATATGCCTGTTTATCGATGT 58.623 37.500 8.54 0.00 0.00 3.06
295 296 5.947228 ACCAATATGCCTGTTTATCGATG 57.053 39.130 8.54 0.00 0.00 3.84
296 297 7.882791 TCATTACCAATATGCCTGTTTATCGAT 59.117 33.333 2.16 2.16 0.00 3.59
297 298 7.172532 GTCATTACCAATATGCCTGTTTATCGA 59.827 37.037 0.00 0.00 0.00 3.59
298 299 7.298122 GTCATTACCAATATGCCTGTTTATCG 58.702 38.462 0.00 0.00 0.00 2.92
299 300 7.298122 CGTCATTACCAATATGCCTGTTTATC 58.702 38.462 0.00 0.00 0.00 1.75
300 301 6.206634 CCGTCATTACCAATATGCCTGTTTAT 59.793 38.462 0.00 0.00 0.00 1.40
301 302 5.529430 CCGTCATTACCAATATGCCTGTTTA 59.471 40.000 0.00 0.00 0.00 2.01
302 303 4.338118 CCGTCATTACCAATATGCCTGTTT 59.662 41.667 0.00 0.00 0.00 2.83
303 304 3.882888 CCGTCATTACCAATATGCCTGTT 59.117 43.478 0.00 0.00 0.00 3.16
304 305 3.118038 ACCGTCATTACCAATATGCCTGT 60.118 43.478 0.00 0.00 0.00 4.00
305 306 3.250762 CACCGTCATTACCAATATGCCTG 59.749 47.826 0.00 0.00 0.00 4.85
306 307 3.476552 CACCGTCATTACCAATATGCCT 58.523 45.455 0.00 0.00 0.00 4.75
307 308 2.031157 GCACCGTCATTACCAATATGCC 60.031 50.000 0.00 0.00 0.00 4.40
308 309 2.616376 TGCACCGTCATTACCAATATGC 59.384 45.455 0.00 0.00 0.00 3.14
309 310 4.275689 ACATGCACCGTCATTACCAATATG 59.724 41.667 0.00 0.00 0.00 1.78
310 311 4.460263 ACATGCACCGTCATTACCAATAT 58.540 39.130 0.00 0.00 0.00 1.28
311 312 3.879998 ACATGCACCGTCATTACCAATA 58.120 40.909 0.00 0.00 0.00 1.90
312 313 2.722094 ACATGCACCGTCATTACCAAT 58.278 42.857 0.00 0.00 0.00 3.16
313 314 2.192664 ACATGCACCGTCATTACCAA 57.807 45.000 0.00 0.00 0.00 3.67
314 315 2.080693 GAACATGCACCGTCATTACCA 58.919 47.619 0.00 0.00 0.00 3.25
315 316 1.400494 GGAACATGCACCGTCATTACC 59.600 52.381 0.00 0.00 0.00 2.85
316 317 2.080693 TGGAACATGCACCGTCATTAC 58.919 47.619 0.00 0.00 0.00 1.89
317 318 2.481289 TGGAACATGCACCGTCATTA 57.519 45.000 0.00 0.00 0.00 1.90
318 319 3.337834 TGGAACATGCACCGTCATT 57.662 47.368 0.00 0.00 0.00 2.57
324 325 4.185475 TGGTGACATATGGAACATGCACC 61.185 47.826 7.80 15.72 43.41 5.01
325 326 3.016031 TGGTGACATATGGAACATGCAC 58.984 45.455 7.80 3.76 38.59 4.57
326 327 3.362870 TGGTGACATATGGAACATGCA 57.637 42.857 7.80 0.00 38.59 3.96
327 328 3.067180 CCTTGGTGACATATGGAACATGC 59.933 47.826 7.80 0.00 42.85 4.06
328 329 3.633525 CCCTTGGTGACATATGGAACATG 59.366 47.826 7.80 4.60 42.85 3.21
329 330 3.373001 CCCCTTGGTGACATATGGAACAT 60.373 47.826 7.80 0.00 42.85 2.71
330 331 2.025416 CCCCTTGGTGACATATGGAACA 60.025 50.000 7.80 0.00 42.93 3.18
331 332 2.654863 CCCCTTGGTGACATATGGAAC 58.345 52.381 7.80 4.65 42.32 3.62
332 333 1.064017 GCCCCTTGGTGACATATGGAA 60.064 52.381 7.80 0.00 42.32 3.53
333 334 0.550914 GCCCCTTGGTGACATATGGA 59.449 55.000 7.80 0.00 42.32 3.41
334 335 0.468029 GGCCCCTTGGTGACATATGG 60.468 60.000 7.80 0.00 42.32 2.74
335 336 0.819259 CGGCCCCTTGGTGACATATG 60.819 60.000 0.00 0.00 42.32 1.78
336 337 0.986019 TCGGCCCCTTGGTGACATAT 60.986 55.000 0.00 0.00 42.32 1.78
337 338 1.613928 TCGGCCCCTTGGTGACATA 60.614 57.895 0.00 0.00 42.32 2.29
338 339 2.933287 TCGGCCCCTTGGTGACAT 60.933 61.111 0.00 0.00 42.32 3.06
339 340 3.636231 CTCGGCCCCTTGGTGACA 61.636 66.667 0.00 0.00 39.83 3.58
340 341 4.410400 CCTCGGCCCCTTGGTGAC 62.410 72.222 0.00 0.00 0.00 3.67
341 342 3.943137 ATCCTCGGCCCCTTGGTGA 62.943 63.158 0.00 0.00 0.00 4.02
342 343 3.411517 ATCCTCGGCCCCTTGGTG 61.412 66.667 0.00 0.00 0.00 4.17
343 344 3.411517 CATCCTCGGCCCCTTGGT 61.412 66.667 0.00 0.00 0.00 3.67
344 345 2.893682 GAACATCCTCGGCCCCTTGG 62.894 65.000 0.00 0.00 0.00 3.61
345 346 1.452108 GAACATCCTCGGCCCCTTG 60.452 63.158 0.00 0.00 0.00 3.61
346 347 2.998949 GAACATCCTCGGCCCCTT 59.001 61.111 0.00 0.00 0.00 3.95
347 348 3.470888 CGAACATCCTCGGCCCCT 61.471 66.667 0.00 0.00 35.14 4.79
353 354 1.079819 AGTGTGCCGAACATCCTCG 60.080 57.895 0.00 0.00 41.97 4.63
354 355 1.021390 CCAGTGTGCCGAACATCCTC 61.021 60.000 0.00 0.00 41.97 3.71
355 356 1.003355 CCAGTGTGCCGAACATCCT 60.003 57.895 0.00 0.00 41.97 3.24
356 357 2.040544 CCCAGTGTGCCGAACATCC 61.041 63.158 0.00 0.00 41.97 3.51
357 358 2.690778 GCCCAGTGTGCCGAACATC 61.691 63.158 0.00 0.00 41.97 3.06
358 359 2.672996 GCCCAGTGTGCCGAACAT 60.673 61.111 0.00 0.00 41.97 2.71
359 360 3.705934 TTGCCCAGTGTGCCGAACA 62.706 57.895 0.00 0.00 36.04 3.18
360 361 2.406452 CTTTGCCCAGTGTGCCGAAC 62.406 60.000 0.00 0.00 0.00 3.95
361 362 2.124109 TTTGCCCAGTGTGCCGAA 60.124 55.556 0.00 0.00 0.00 4.30
362 363 2.594303 CTTTGCCCAGTGTGCCGA 60.594 61.111 0.00 0.00 0.00 5.54
363 364 3.673484 CCTTTGCCCAGTGTGCCG 61.673 66.667 0.00 0.00 0.00 5.69
364 365 2.203480 TCCTTTGCCCAGTGTGCC 60.203 61.111 0.00 0.00 0.00 5.01
370 371 2.747855 GCCGACTCCTTTGCCCAG 60.748 66.667 0.00 0.00 0.00 4.45
464 471 1.972198 CGTTGGTGACCTCCTGCTA 59.028 57.895 2.11 0.00 0.00 3.49
746 772 4.812476 TTGAGGTCGATGGGCGCG 62.812 66.667 0.00 0.00 40.61 6.86
747 773 3.195698 GTTGAGGTCGATGGGCGC 61.196 66.667 0.00 0.00 40.61 6.53
748 774 2.885644 CGTTGAGGTCGATGGGCG 60.886 66.667 0.00 0.00 42.69 6.13
749 775 3.195698 GCGTTGAGGTCGATGGGC 61.196 66.667 0.00 0.00 0.00 5.36
750 776 2.511600 GGCGTTGAGGTCGATGGG 60.512 66.667 0.00 0.00 0.00 4.00
878 910 0.450583 GCATGTAGTCCTCGTCGACA 59.549 55.000 17.16 1.87 35.07 4.35
1032 1121 1.371183 CTCGTGGCTGAGTGGGAAA 59.629 57.895 0.00 0.00 0.00 3.13
1060 1149 3.200385 TCCTCTTCCTCTAGCTCGTAGTT 59.800 47.826 0.00 0.00 0.00 2.24
1067 1156 1.562475 ACTCGTCCTCTTCCTCTAGCT 59.438 52.381 0.00 0.00 0.00 3.32
1150 1239 1.279840 GCTTGTTCTTGCGCTTCGT 59.720 52.632 9.73 0.00 0.00 3.85
1163 1252 1.375396 TATGCCTTCGTGCGCTTGT 60.375 52.632 9.73 0.00 0.00 3.16
1194 1283 2.289002 CACTCGCAAAGAAAGCTTGTCT 59.711 45.455 0.00 2.39 33.79 3.41
1202 1291 0.028770 CGCCAACACTCGCAAAGAAA 59.971 50.000 0.00 0.00 0.00 2.52
1228 1317 1.379146 GGTCTTGGGGTCTTGTCCC 59.621 63.158 0.00 0.00 46.31 4.46
1260 1350 3.320541 ACGGATCCAAAAAGTTGAATGCA 59.679 39.130 13.41 0.00 36.83 3.96
1341 1431 1.074248 GAAATGGACACCCACCCGT 59.926 57.895 0.00 0.00 46.98 5.28
1363 1453 1.991813 TGTTGGATCACCCTCCATCAA 59.008 47.619 0.00 0.00 44.66 2.57
1666 1767 3.958147 ATGTGACTTGAGGGCGGCG 62.958 63.158 0.51 0.51 0.00 6.46
1692 1795 1.073199 AACCTCCTCCACGGCTTTG 59.927 57.895 0.00 0.00 0.00 2.77
1731 1834 2.852075 TTGGTCTTCCCCTGCGGT 60.852 61.111 0.00 0.00 0.00 5.68
1736 1839 1.068121 CTTGGAGTTGGTCTTCCCCT 58.932 55.000 0.00 0.00 0.00 4.79
1842 1946 1.011968 CCGCCTTGAAACATCGACGA 61.012 55.000 0.00 0.00 0.00 4.20
1913 2017 3.988976 ACATCTTAGCTTGCTTCTCCA 57.011 42.857 0.00 0.00 0.00 3.86
1954 2058 4.145052 TCGATCTCTAGCATCTTGGCTTA 58.855 43.478 0.00 0.00 42.71 3.09
2033 2137 5.669447 AGATCCACCTTTATGATCTTCACCT 59.331 40.000 0.00 0.00 41.81 4.00
2038 2142 5.363868 TGTCGAGATCCACCTTTATGATCTT 59.636 40.000 3.05 0.00 43.90 2.40
2082 2186 0.966920 ACATCTTCTCGAACCACGGT 59.033 50.000 0.00 0.00 42.82 4.83
2101 2205 2.675032 CGAACTTGAGCATGTCAGCCTA 60.675 50.000 0.00 0.00 36.21 3.93
2319 2430 3.144871 GCCAGCATCATGCCAGCA 61.145 61.111 15.03 0.00 46.52 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.