Multiple sequence alignment - TraesCS3A01G236000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G236000 chr3A 100.000 2411 0 0 1 2411 440606894 440609304 0.000000e+00 4453.0
1 TraesCS3A01G236000 chr3A 92.571 175 11 2 44 217 585605803 585605630 1.430000e-62 250.0
2 TraesCS3A01G236000 chr3A 93.413 167 11 0 45 211 649812004 649811838 5.150000e-62 248.0
3 TraesCS3A01G236000 chr3A 91.011 178 15 1 34 211 362899855 362899679 3.100000e-59 239.0
4 TraesCS3A01G236000 chr3B 92.334 1787 84 15 206 1948 422513913 422512136 0.000000e+00 2492.0
5 TraesCS3A01G236000 chr3B 86.029 272 11 3 2140 2411 422500804 422500560 1.420000e-67 267.0
6 TraesCS3A01G236000 chr3D 94.591 1479 46 4 205 1650 326870050 326871527 0.000000e+00 2257.0
7 TraesCS3A01G236000 chr3D 78.481 316 48 17 1646 1948 44968542 44968234 3.160000e-44 189.0
8 TraesCS3A01G236000 chr5D 88.235 306 30 4 1649 1948 232006868 232007173 6.340000e-96 361.0
9 TraesCS3A01G236000 chr5D 82.353 425 37 6 2012 2408 6361377 6360963 3.840000e-88 335.0
10 TraesCS3A01G236000 chr5D 92.899 169 11 1 44 211 25039979 25040147 6.660000e-61 244.0
11 TraesCS3A01G236000 chr5D 78.641 309 50 13 1651 1948 241370823 241371126 8.800000e-45 191.0
12 TraesCS3A01G236000 chr4A 82.536 418 32 13 2012 2411 677837119 677836725 1.790000e-86 329.0
13 TraesCS3A01G236000 chr4A 82.100 419 32 15 2012 2411 677866011 677865617 3.870000e-83 318.0
14 TraesCS3A01G236000 chr4A 88.421 95 9 2 1697 1789 3450650 3450556 1.960000e-21 113.0
15 TraesCS3A01G236000 chr1D 92.941 170 11 1 40 208 422381739 422381908 1.850000e-61 246.0
16 TraesCS3A01G236000 chr6D 92.442 172 11 2 45 215 461811929 461811759 6.660000e-61 244.0
17 TraesCS3A01G236000 chr1B 89.894 188 14 5 35 218 653530407 653530221 1.110000e-58 237.0
18 TraesCS3A01G236000 chr7B 89.730 185 17 1 45 229 663256484 663256666 4.010000e-58 235.0
19 TraesCS3A01G236000 chr7B 78.201 289 53 9 1662 1944 408512779 408512495 2.460000e-40 176.0
20 TraesCS3A01G236000 chr5B 90.110 182 15 3 38 218 43959403 43959224 1.440000e-57 233.0
21 TraesCS3A01G236000 chr5B 76.364 275 39 18 2012 2276 408371005 408370747 9.050000e-25 124.0
22 TraesCS3A01G236000 chr7D 81.724 290 36 8 2012 2289 1683079 1682795 2.410000e-55 226.0
23 TraesCS3A01G236000 chr7D 96.226 53 2 0 2218 2270 151538678 151538730 1.190000e-13 87.9
24 TraesCS3A01G236000 chr5A 78.659 328 53 9 2017 2332 466980621 466980299 4.060000e-48 202.0
25 TraesCS3A01G236000 chr5A 80.851 94 16 2 1854 1946 34694238 34694146 3.320000e-09 73.1
26 TraesCS3A01G236000 chr2D 78.261 115 24 1 1831 1945 378357566 378357679 3.320000e-09 73.1
27 TraesCS3A01G236000 chr2D 90.741 54 4 1 1642 1695 592793473 592793525 1.200000e-08 71.3
28 TraesCS3A01G236000 chr2B 80.208 96 19 0 1851 1946 772391536 772391631 3.320000e-09 73.1
29 TraesCS3A01G236000 chr2B 76.744 129 29 1 1818 1946 392528898 392528771 1.200000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G236000 chr3A 440606894 440609304 2410 False 4453 4453 100.000 1 2411 1 chr3A.!!$F1 2410
1 TraesCS3A01G236000 chr3B 422512136 422513913 1777 True 2492 2492 92.334 206 1948 1 chr3B.!!$R2 1742
2 TraesCS3A01G236000 chr3D 326870050 326871527 1477 False 2257 2257 94.591 205 1650 1 chr3D.!!$F1 1445

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 983 0.242017 GCAATGCAACCTCAGACACC 59.758 55.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 1995 0.030908 GTCGTCTATGCCCCTCTTCG 59.969 60.0 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.956420 TCGCAAGAATAAAACTGAGAGTTTA 57.044 32.000 2.25 0.00 45.70 2.01
28 29 8.018677 TCGCAAGAATAAAACTGAGAGTTTAG 57.981 34.615 2.25 0.00 45.70 1.85
29 30 7.656137 TCGCAAGAATAAAACTGAGAGTTTAGT 59.344 33.333 2.25 0.00 45.70 2.24
30 31 8.283291 CGCAAGAATAAAACTGAGAGTTTAGTT 58.717 33.333 2.25 1.54 43.98 2.24
31 32 9.952188 GCAAGAATAAAACTGAGAGTTTAGTTT 57.048 29.630 2.25 0.00 46.78 2.66
37 38 9.899226 ATAAAACTGAGAGTTTAGTTTGAATGC 57.101 29.630 2.25 0.00 46.78 3.56
38 39 6.942532 AACTGAGAGTTTAGTTTGAATGCA 57.057 33.333 0.00 0.00 34.11 3.96
39 40 7.516198 AACTGAGAGTTTAGTTTGAATGCAT 57.484 32.000 0.00 0.00 34.11 3.96
40 41 6.906659 ACTGAGAGTTTAGTTTGAATGCATG 58.093 36.000 0.00 0.00 0.00 4.06
41 42 6.488006 ACTGAGAGTTTAGTTTGAATGCATGT 59.512 34.615 0.00 0.00 0.00 3.21
42 43 7.661437 ACTGAGAGTTTAGTTTGAATGCATGTA 59.339 33.333 0.00 0.00 0.00 2.29
43 44 8.032952 TGAGAGTTTAGTTTGAATGCATGTAG 57.967 34.615 0.00 0.00 0.00 2.74
44 45 7.661437 TGAGAGTTTAGTTTGAATGCATGTAGT 59.339 33.333 0.00 0.00 0.00 2.73
45 46 9.151471 GAGAGTTTAGTTTGAATGCATGTAGTA 57.849 33.333 0.00 0.00 0.00 1.82
46 47 8.936864 AGAGTTTAGTTTGAATGCATGTAGTAC 58.063 33.333 0.00 0.00 0.00 2.73
47 48 8.848474 AGTTTAGTTTGAATGCATGTAGTACT 57.152 30.769 0.00 0.00 0.00 2.73
48 49 8.936864 AGTTTAGTTTGAATGCATGTAGTACTC 58.063 33.333 0.00 0.00 0.00 2.59
49 50 7.843490 TTAGTTTGAATGCATGTAGTACTCC 57.157 36.000 0.00 0.00 0.00 3.85
50 51 5.186198 AGTTTGAATGCATGTAGTACTCCC 58.814 41.667 0.00 0.00 0.00 4.30
51 52 5.045578 AGTTTGAATGCATGTAGTACTCCCT 60.046 40.000 0.00 0.00 0.00 4.20
52 53 4.672587 TGAATGCATGTAGTACTCCCTC 57.327 45.455 0.00 0.00 0.00 4.30
53 54 3.388024 TGAATGCATGTAGTACTCCCTCC 59.612 47.826 0.00 0.00 0.00 4.30
54 55 1.399714 TGCATGTAGTACTCCCTCCG 58.600 55.000 0.00 0.00 0.00 4.63
55 56 1.341679 TGCATGTAGTACTCCCTCCGT 60.342 52.381 0.00 0.00 0.00 4.69
56 57 1.755380 GCATGTAGTACTCCCTCCGTT 59.245 52.381 0.00 0.00 0.00 4.44
57 58 2.167900 GCATGTAGTACTCCCTCCGTTT 59.832 50.000 0.00 0.00 0.00 3.60
58 59 3.737355 GCATGTAGTACTCCCTCCGTTTC 60.737 52.174 0.00 0.00 0.00 2.78
59 60 3.446442 TGTAGTACTCCCTCCGTTTCT 57.554 47.619 0.00 0.00 0.00 2.52
60 61 4.574674 TGTAGTACTCCCTCCGTTTCTA 57.425 45.455 0.00 0.00 0.00 2.10
61 62 4.922206 TGTAGTACTCCCTCCGTTTCTAA 58.078 43.478 0.00 0.00 0.00 2.10
62 63 5.324409 TGTAGTACTCCCTCCGTTTCTAAA 58.676 41.667 0.00 0.00 0.00 1.85
63 64 5.954150 TGTAGTACTCCCTCCGTTTCTAAAT 59.046 40.000 0.00 0.00 0.00 1.40
64 65 7.118723 TGTAGTACTCCCTCCGTTTCTAAATA 58.881 38.462 0.00 0.00 0.00 1.40
65 66 7.781693 TGTAGTACTCCCTCCGTTTCTAAATAT 59.218 37.037 0.00 0.00 0.00 1.28
66 67 7.672122 AGTACTCCCTCCGTTTCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
67 68 8.087303 AGTACTCCCTCCGTTTCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
68 69 7.985752 AGTACTCCCTCCGTTTCTAAATATTTG 59.014 37.037 11.05 1.65 0.00 2.32
69 70 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
70 71 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
71 72 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
72 73 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
73 74 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
74 75 9.169592 CCCTCCGTTTCTAAATATTTGTCTTTA 57.830 33.333 11.05 0.00 0.00 1.85
106 107 7.709269 TTCAATAAGTGATTACATACGGAGC 57.291 36.000 0.00 0.00 35.70 4.70
107 108 6.811954 TCAATAAGTGATTACATACGGAGCA 58.188 36.000 0.00 0.00 0.00 4.26
108 109 7.269316 TCAATAAGTGATTACATACGGAGCAA 58.731 34.615 0.00 0.00 0.00 3.91
109 110 7.766738 TCAATAAGTGATTACATACGGAGCAAA 59.233 33.333 0.00 0.00 0.00 3.68
110 111 8.394877 CAATAAGTGATTACATACGGAGCAAAA 58.605 33.333 0.00 0.00 0.00 2.44
111 112 8.677148 ATAAGTGATTACATACGGAGCAAAAT 57.323 30.769 0.00 0.00 0.00 1.82
112 113 6.363577 AGTGATTACATACGGAGCAAAATG 57.636 37.500 0.00 0.00 0.00 2.32
113 114 6.112734 AGTGATTACATACGGAGCAAAATGA 58.887 36.000 0.00 0.00 0.00 2.57
114 115 6.597672 AGTGATTACATACGGAGCAAAATGAA 59.402 34.615 0.00 0.00 0.00 2.57
115 116 7.283127 AGTGATTACATACGGAGCAAAATGAAT 59.717 33.333 0.00 0.00 0.00 2.57
116 117 7.376866 GTGATTACATACGGAGCAAAATGAATG 59.623 37.037 0.00 0.00 0.00 2.67
117 118 6.993786 TTACATACGGAGCAAAATGAATGA 57.006 33.333 0.00 0.00 0.00 2.57
118 119 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
119 120 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
120 121 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
121 122 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
122 123 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
123 124 6.949352 ACGGAGCAAAATGAATGAATCTAT 57.051 33.333 0.00 0.00 0.00 1.98
124 125 9.725019 ATACGGAGCAAAATGAATGAATCTATA 57.275 29.630 0.00 0.00 0.00 1.31
125 126 8.627208 ACGGAGCAAAATGAATGAATCTATAT 57.373 30.769 0.00 0.00 0.00 0.86
126 127 9.071276 ACGGAGCAAAATGAATGAATCTATATT 57.929 29.630 0.00 0.00 0.00 1.28
127 128 9.552114 CGGAGCAAAATGAATGAATCTATATTC 57.448 33.333 0.00 0.00 41.69 1.75
161 162 9.511272 TGTCTATATACATTCGTATGTGGTAGT 57.489 33.333 16.91 2.71 44.56 2.73
162 163 9.985318 GTCTATATACATTCGTATGTGGTAGTC 57.015 37.037 16.91 9.92 44.56 2.59
163 164 9.170734 TCTATATACATTCGTATGTGGTAGTCC 57.829 37.037 16.91 0.00 44.56 3.85
164 165 7.770366 ATATACATTCGTATGTGGTAGTCCA 57.230 36.000 16.91 0.00 44.56 4.02
165 166 6.665992 ATACATTCGTATGTGGTAGTCCAT 57.334 37.500 16.91 0.00 44.56 3.41
166 167 5.353394 ACATTCGTATGTGGTAGTCCATT 57.647 39.130 6.89 0.00 46.20 3.16
167 168 5.741011 ACATTCGTATGTGGTAGTCCATTT 58.259 37.500 6.89 0.00 46.20 2.32
168 169 6.880484 ACATTCGTATGTGGTAGTCCATTTA 58.120 36.000 6.89 0.00 46.20 1.40
169 170 7.332557 ACATTCGTATGTGGTAGTCCATTTAA 58.667 34.615 6.89 0.00 46.20 1.52
170 171 7.825270 ACATTCGTATGTGGTAGTCCATTTAAA 59.175 33.333 6.89 0.00 46.20 1.52
171 172 8.670135 CATTCGTATGTGGTAGTCCATTTAAAA 58.330 33.333 0.00 0.00 46.20 1.52
172 173 8.795842 TTCGTATGTGGTAGTCCATTTAAAAT 57.204 30.769 0.00 0.00 46.20 1.82
173 174 8.795842 TCGTATGTGGTAGTCCATTTAAAATT 57.204 30.769 0.00 0.00 46.20 1.82
174 175 9.233649 TCGTATGTGGTAGTCCATTTAAAATTT 57.766 29.630 0.00 0.00 46.20 1.82
175 176 9.498307 CGTATGTGGTAGTCCATTTAAAATTTC 57.502 33.333 0.00 0.00 46.20 2.17
200 201 9.947433 TCTAAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 37.29 4.69
202 203 8.857694 AAAAGACAAATATTTAGGAACGGAGA 57.142 30.769 0.00 0.00 0.00 3.71
203 204 8.494016 AAAGACAAATATTTAGGAACGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
287 288 1.407979 GCTTCCTTTGCCTGATGATGG 59.592 52.381 0.00 0.00 0.00 3.51
314 315 1.153667 GGCTCACTCGGCTTCTGAG 60.154 63.158 1.37 1.37 39.40 3.35
433 434 6.539464 TGTTTAGACAAATATTTCCGCGGTAT 59.461 34.615 27.15 21.17 31.49 2.73
530 560 2.572095 TACGTGGCGCCTCATTCTGG 62.572 60.000 29.70 12.44 0.00 3.86
578 608 4.401925 GGATCCCATACAAAGATGAAGGG 58.598 47.826 0.00 0.00 37.02 3.95
593 623 0.249398 AAGGGAGGGATTTGACGTCG 59.751 55.000 11.62 0.00 0.00 5.12
597 627 1.359459 GAGGGATTTGACGTCGCCAC 61.359 60.000 11.62 0.73 0.00 5.01
647 677 3.264104 CAAATTCCCGCAAAATGCTGAT 58.736 40.909 0.43 0.00 42.25 2.90
675 705 1.399727 CGATTCTCACGGTGCAAAACC 60.400 52.381 2.51 0.00 46.60 3.27
690 720 0.400213 AAACCGACCAATGGAGCAGA 59.600 50.000 6.16 0.00 0.00 4.26
775 805 1.714460 CACAGAAGTAGACAACGCGAC 59.286 52.381 15.93 0.00 0.00 5.19
803 833 3.272334 GCCATGATCGTCACGCCC 61.272 66.667 0.00 0.00 0.00 6.13
811 841 4.003788 CGTCACGCCCAACCTCCT 62.004 66.667 0.00 0.00 0.00 3.69
863 893 1.795768 TGAATTCGAGGACACACAGC 58.204 50.000 0.04 0.00 0.00 4.40
900 930 2.758089 GGTCATGCCAGCTGCTTCG 61.758 63.158 8.66 0.00 42.00 3.79
949 983 0.242017 GCAATGCAACCTCAGACACC 59.758 55.000 0.00 0.00 0.00 4.16
966 1000 2.585869 CCAGCACACACGACACGAC 61.586 63.158 0.00 0.00 0.00 4.34
967 1001 1.876263 CAGCACACACGACACGACA 60.876 57.895 0.00 0.00 0.00 4.35
1038 1072 1.384191 GGTGGTGAAGAAGGGGCAT 59.616 57.895 0.00 0.00 0.00 4.40
1194 1228 0.901827 TGGAGCACCGCTTCAAGATA 59.098 50.000 0.00 0.00 41.71 1.98
1215 1249 0.907486 TGAGCAAGCAGGTGAGCTAT 59.093 50.000 0.15 0.00 45.89 2.97
1243 1277 1.146358 GATCACCGGCTACGTCAAGC 61.146 60.000 0.00 1.51 41.99 4.01
1538 1572 4.712191 TCGTTTAATTTCGCGAGTTTGA 57.288 36.364 9.59 0.96 0.00 2.69
1598 1634 3.119424 TCGTTACAAGTGTGTCAGTGTCA 60.119 43.478 0.00 0.00 39.30 3.58
1673 1709 5.493397 TTTTCGCGAATATGCAAAGTTTG 57.507 34.783 24.05 11.41 34.15 2.93
1695 1731 9.123709 GTTTGCGTGTCATTTTATTGATAGAAA 57.876 29.630 0.00 0.00 0.00 2.52
1696 1732 9.853555 TTTGCGTGTCATTTTATTGATAGAAAT 57.146 25.926 0.00 0.00 0.00 2.17
1697 1733 9.853555 TTGCGTGTCATTTTATTGATAGAAATT 57.146 25.926 0.00 0.00 0.00 1.82
1734 1774 1.153353 GGTACAACACATGACACGGG 58.847 55.000 0.00 0.00 0.00 5.28
1736 1776 0.106894 TACAACACATGACACGGGCA 59.893 50.000 0.00 0.00 0.00 5.36
1752 1792 1.081242 GCACAAGGGCGTGAACATG 60.081 57.895 0.00 0.00 39.34 3.21
1753 1793 1.795170 GCACAAGGGCGTGAACATGT 61.795 55.000 0.00 0.00 39.34 3.21
1758 1798 0.889186 AGGGCGTGAACATGTTGTCC 60.889 55.000 17.58 12.86 0.00 4.02
1765 1805 1.872952 TGAACATGTTGTCCGAAGCAG 59.127 47.619 17.58 0.00 0.00 4.24
1767 1807 1.800805 ACATGTTGTCCGAAGCAGAG 58.199 50.000 0.00 0.00 0.00 3.35
1769 1809 1.998315 CATGTTGTCCGAAGCAGAGAG 59.002 52.381 0.00 0.00 0.00 3.20
1783 1823 1.039068 AGAGAGACATGGGATGCTCG 58.961 55.000 0.00 0.00 37.99 5.03
1784 1824 0.033228 GAGAGACATGGGATGCTCGG 59.967 60.000 0.00 0.00 37.99 4.63
1785 1825 0.689080 AGAGACATGGGATGCTCGGT 60.689 55.000 0.00 0.00 37.99 4.69
1816 1860 2.394545 AAAAACACGGCTAAACTCGC 57.605 45.000 0.00 0.00 0.00 5.03
1847 1891 5.580022 AGAACTAGCCCAAACCAATAACAT 58.420 37.500 0.00 0.00 0.00 2.71
1850 1894 5.518865 ACTAGCCCAAACCAATAACATGAT 58.481 37.500 0.00 0.00 0.00 2.45
1875 1919 5.983540 ACCAACATCTCTAGATTCAGAACC 58.016 41.667 0.00 0.00 31.21 3.62
1902 1946 2.853914 GCGAGCAACCAAGACGAC 59.146 61.111 0.00 0.00 0.00 4.34
1910 1954 0.034896 AACCAAGACGACGCCTTCAT 59.965 50.000 0.00 0.00 0.00 2.57
1911 1955 0.670546 ACCAAGACGACGCCTTCATG 60.671 55.000 0.00 0.00 0.00 3.07
1914 1958 1.798223 CAAGACGACGCCTTCATGAAA 59.202 47.619 9.88 0.00 0.00 2.69
1918 1962 1.272490 ACGACGCCTTCATGAAAGAGA 59.728 47.619 13.87 0.00 37.12 3.10
1919 1963 1.923204 CGACGCCTTCATGAAAGAGAG 59.077 52.381 13.87 8.06 37.12 3.20
1924 1968 1.923204 CCTTCATGAAAGAGAGCGACG 59.077 52.381 9.88 0.00 37.12 5.12
1929 1973 1.443872 GAAAGAGAGCGACGCCGAA 60.444 57.895 17.79 0.00 38.22 4.30
1938 1982 4.204891 GACGCCGAAACGCCATCG 62.205 66.667 0.00 0.00 42.43 3.84
1944 1988 2.813908 GAAACGCCATCGCCGTCT 60.814 61.111 0.00 0.00 38.06 4.18
1948 1992 3.333189 CGCCATCGCCGTCTGATG 61.333 66.667 2.72 2.72 42.26 3.07
1949 1993 3.643978 GCCATCGCCGTCTGATGC 61.644 66.667 3.90 0.00 41.48 3.91
1950 1994 2.107750 CCATCGCCGTCTGATGCT 59.892 61.111 3.90 0.00 41.48 3.79
1951 1995 1.953138 CCATCGCCGTCTGATGCTC 60.953 63.158 3.90 0.00 41.48 4.26
1952 1996 2.026734 ATCGCCGTCTGATGCTCG 59.973 61.111 0.00 0.00 0.00 5.03
1953 1997 2.481471 ATCGCCGTCTGATGCTCGA 61.481 57.895 12.45 12.45 0.00 4.04
1954 1998 2.004808 ATCGCCGTCTGATGCTCGAA 62.005 55.000 13.54 2.46 0.00 3.71
1955 1999 2.226896 CGCCGTCTGATGCTCGAAG 61.227 63.158 4.47 0.00 0.00 3.79
1956 2000 1.139734 GCCGTCTGATGCTCGAAGA 59.860 57.895 0.00 0.00 0.00 2.87
1968 2012 2.415825 TCGAAGAGGGGCATAGACG 58.584 57.895 0.00 0.00 0.00 4.18
1969 2013 0.106868 TCGAAGAGGGGCATAGACGA 60.107 55.000 0.00 0.00 0.00 4.20
1970 2014 0.030908 CGAAGAGGGGCATAGACGAC 59.969 60.000 0.00 0.00 0.00 4.34
1971 2015 0.030908 GAAGAGGGGCATAGACGACG 59.969 60.000 0.00 0.00 0.00 5.12
1972 2016 1.392710 AAGAGGGGCATAGACGACGG 61.393 60.000 0.00 0.00 0.00 4.79
1973 2017 3.501458 GAGGGGCATAGACGACGGC 62.501 68.421 0.00 0.00 0.00 5.68
1974 2018 4.603946 GGGGCATAGACGACGGCC 62.604 72.222 0.00 0.00 45.67 6.13
1991 2035 3.244105 CGTGACAACGCCTCCAAG 58.756 61.111 0.00 0.00 43.98 3.61
1992 2036 1.300620 CGTGACAACGCCTCCAAGA 60.301 57.895 0.00 0.00 43.98 3.02
1993 2037 1.284982 CGTGACAACGCCTCCAAGAG 61.285 60.000 0.00 0.00 43.98 2.85
1994 2038 0.033504 GTGACAACGCCTCCAAGAGA 59.966 55.000 0.00 0.00 0.00 3.10
1995 2039 0.318441 TGACAACGCCTCCAAGAGAG 59.682 55.000 0.00 0.00 42.83 3.20
1996 2040 0.603569 GACAACGCCTCCAAGAGAGA 59.396 55.000 0.00 0.00 46.50 3.10
1997 2041 0.318762 ACAACGCCTCCAAGAGAGAC 59.681 55.000 0.00 0.00 46.50 3.36
1999 2043 2.492090 CGCCTCCAAGAGAGACGG 59.508 66.667 0.00 0.00 43.97 4.79
2000 2044 2.185608 GCCTCCAAGAGAGACGGC 59.814 66.667 0.00 0.00 46.50 5.68
2001 2045 2.492090 CCTCCAAGAGAGACGGCG 59.508 66.667 4.80 4.80 46.50 6.46
2002 2046 2.202676 CTCCAAGAGAGACGGCGC 60.203 66.667 6.90 0.00 46.50 6.53
2003 2047 3.708220 CTCCAAGAGAGACGGCGCC 62.708 68.421 19.07 19.07 46.50 6.53
2004 2048 4.821589 CCAAGAGAGACGGCGCCC 62.822 72.222 23.46 7.92 0.00 6.13
2018 2062 4.545706 GCCCGCGGGTCATCATCA 62.546 66.667 42.53 0.00 37.65 3.07
2019 2063 2.189257 CCCGCGGGTCATCATCAA 59.811 61.111 36.64 0.00 0.00 2.57
2020 2064 2.180204 CCCGCGGGTCATCATCAAC 61.180 63.158 36.64 0.00 0.00 3.18
2021 2065 2.525248 CCGCGGGTCATCATCAACG 61.525 63.158 20.10 0.00 0.00 4.10
2022 2066 2.709475 GCGGGTCATCATCAACGC 59.291 61.111 0.00 0.00 40.19 4.84
2023 2067 2.106074 GCGGGTCATCATCAACGCA 61.106 57.895 0.00 0.00 45.57 5.24
2024 2068 1.439353 GCGGGTCATCATCAACGCAT 61.439 55.000 0.00 0.00 45.57 4.73
2025 2069 0.583438 CGGGTCATCATCAACGCATC 59.417 55.000 0.00 0.00 0.00 3.91
2026 2070 1.807755 CGGGTCATCATCAACGCATCT 60.808 52.381 0.00 0.00 0.00 2.90
2027 2071 2.292267 GGGTCATCATCAACGCATCTT 58.708 47.619 0.00 0.00 0.00 2.40
2028 2072 2.032550 GGGTCATCATCAACGCATCTTG 59.967 50.000 0.00 0.00 0.00 3.02
2029 2073 2.679837 GGTCATCATCAACGCATCTTGT 59.320 45.455 0.00 0.00 0.00 3.16
2030 2074 3.486375 GGTCATCATCAACGCATCTTGTG 60.486 47.826 0.00 0.00 0.00 3.33
2031 2075 3.125829 GTCATCATCAACGCATCTTGTGT 59.874 43.478 0.00 0.00 43.87 3.72
2032 2076 3.371898 TCATCATCAACGCATCTTGTGTC 59.628 43.478 0.00 0.00 40.68 3.67
2033 2077 3.044235 TCATCAACGCATCTTGTGTCT 57.956 42.857 0.00 0.00 40.68 3.41
2034 2078 2.995939 TCATCAACGCATCTTGTGTCTC 59.004 45.455 0.00 0.00 40.68 3.36
2035 2079 1.795768 TCAACGCATCTTGTGTCTCC 58.204 50.000 0.00 0.00 40.68 3.71
2036 2080 1.344438 TCAACGCATCTTGTGTCTCCT 59.656 47.619 0.00 0.00 40.68 3.69
2037 2081 2.146342 CAACGCATCTTGTGTCTCCTT 58.854 47.619 0.00 0.00 40.68 3.36
2038 2082 1.800805 ACGCATCTTGTGTCTCCTTG 58.199 50.000 0.00 0.00 36.11 3.61
2039 2083 1.070758 ACGCATCTTGTGTCTCCTTGT 59.929 47.619 0.00 0.00 36.11 3.16
2040 2084 2.299013 ACGCATCTTGTGTCTCCTTGTA 59.701 45.455 0.00 0.00 36.11 2.41
2041 2085 2.668457 CGCATCTTGTGTCTCCTTGTAC 59.332 50.000 0.00 0.00 0.00 2.90
2042 2086 3.664107 GCATCTTGTGTCTCCTTGTACA 58.336 45.455 0.00 0.00 0.00 2.90
2043 2087 4.256920 GCATCTTGTGTCTCCTTGTACAT 58.743 43.478 0.00 0.00 0.00 2.29
2044 2088 4.093998 GCATCTTGTGTCTCCTTGTACATG 59.906 45.833 0.00 0.00 0.00 3.21
2045 2089 4.955811 TCTTGTGTCTCCTTGTACATGT 57.044 40.909 2.69 2.69 0.00 3.21
2046 2090 5.290493 TCTTGTGTCTCCTTGTACATGTT 57.710 39.130 2.30 0.00 0.00 2.71
2047 2091 5.680619 TCTTGTGTCTCCTTGTACATGTTT 58.319 37.500 2.30 0.00 0.00 2.83
2048 2092 6.119536 TCTTGTGTCTCCTTGTACATGTTTT 58.880 36.000 2.30 0.00 0.00 2.43
2049 2093 6.601613 TCTTGTGTCTCCTTGTACATGTTTTT 59.398 34.615 2.30 0.00 0.00 1.94
2050 2094 6.371809 TGTGTCTCCTTGTACATGTTTTTC 57.628 37.500 2.30 0.00 0.00 2.29
2051 2095 6.119536 TGTGTCTCCTTGTACATGTTTTTCT 58.880 36.000 2.30 0.00 0.00 2.52
2052 2096 6.601613 TGTGTCTCCTTGTACATGTTTTTCTT 59.398 34.615 2.30 0.00 0.00 2.52
2053 2097 6.912591 GTGTCTCCTTGTACATGTTTTTCTTG 59.087 38.462 2.30 0.00 0.00 3.02
2054 2098 6.826231 TGTCTCCTTGTACATGTTTTTCTTGA 59.174 34.615 2.30 0.00 0.00 3.02
2055 2099 7.502226 TGTCTCCTTGTACATGTTTTTCTTGAT 59.498 33.333 2.30 0.00 0.00 2.57
2056 2100 8.999431 GTCTCCTTGTACATGTTTTTCTTGATA 58.001 33.333 2.30 0.00 0.00 2.15
2057 2101 9.567776 TCTCCTTGTACATGTTTTTCTTGATAA 57.432 29.630 2.30 0.00 0.00 1.75
2058 2102 9.831737 CTCCTTGTACATGTTTTTCTTGATAAG 57.168 33.333 2.30 0.00 0.00 1.73
2059 2103 9.349713 TCCTTGTACATGTTTTTCTTGATAAGT 57.650 29.630 2.30 0.00 0.00 2.24
2060 2104 9.965824 CCTTGTACATGTTTTTCTTGATAAGTT 57.034 29.630 2.30 0.00 0.00 2.66
2089 2133 5.164233 GCTTTTTGAGGAAGCATTAGAACC 58.836 41.667 4.13 0.00 46.67 3.62
2090 2134 5.278957 GCTTTTTGAGGAAGCATTAGAACCA 60.279 40.000 4.13 0.00 46.67 3.67
2091 2135 6.573094 GCTTTTTGAGGAAGCATTAGAACCAT 60.573 38.462 4.13 0.00 46.67 3.55
2092 2136 6.515272 TTTTGAGGAAGCATTAGAACCATC 57.485 37.500 0.00 0.00 0.00 3.51
2093 2137 5.441718 TTGAGGAAGCATTAGAACCATCT 57.558 39.130 0.00 0.00 39.82 2.90
2094 2138 5.441718 TGAGGAAGCATTAGAACCATCTT 57.558 39.130 0.00 0.00 37.10 2.40
2095 2139 5.188434 TGAGGAAGCATTAGAACCATCTTG 58.812 41.667 0.00 0.00 37.10 3.02
2096 2140 5.184892 AGGAAGCATTAGAACCATCTTGT 57.815 39.130 0.00 0.00 37.10 3.16
2097 2141 6.070251 TGAGGAAGCATTAGAACCATCTTGTA 60.070 38.462 0.00 0.00 37.10 2.41
2098 2142 6.904626 AGGAAGCATTAGAACCATCTTGTAT 58.095 36.000 0.00 0.00 37.10 2.29
2099 2143 8.034313 AGGAAGCATTAGAACCATCTTGTATA 57.966 34.615 0.00 0.00 37.10 1.47
2100 2144 8.664079 AGGAAGCATTAGAACCATCTTGTATAT 58.336 33.333 0.00 0.00 37.10 0.86
2101 2145 9.944376 GGAAGCATTAGAACCATCTTGTATATA 57.056 33.333 0.00 0.00 37.10 0.86
2190 2234 7.889589 TTACTTGTTATCATATGCTGATCCG 57.110 36.000 0.00 0.00 43.70 4.18
2191 2235 6.101650 ACTTGTTATCATATGCTGATCCGA 57.898 37.500 0.00 0.00 43.70 4.55
2192 2236 6.524734 ACTTGTTATCATATGCTGATCCGAA 58.475 36.000 0.00 0.00 43.70 4.30
2193 2237 6.992123 ACTTGTTATCATATGCTGATCCGAAA 59.008 34.615 0.00 0.00 43.70 3.46
2194 2238 7.498900 ACTTGTTATCATATGCTGATCCGAAAA 59.501 33.333 0.00 0.00 43.70 2.29
2195 2239 7.189693 TGTTATCATATGCTGATCCGAAAAC 57.810 36.000 0.00 0.00 43.70 2.43
2196 2240 6.765512 TGTTATCATATGCTGATCCGAAAACA 59.234 34.615 0.00 0.00 43.70 2.83
2197 2241 7.281999 TGTTATCATATGCTGATCCGAAAACAA 59.718 33.333 0.00 0.00 43.70 2.83
2198 2242 5.484173 TCATATGCTGATCCGAAAACAAC 57.516 39.130 0.00 0.00 0.00 3.32
2199 2243 4.940654 TCATATGCTGATCCGAAAACAACA 59.059 37.500 0.00 0.00 0.00 3.33
2200 2244 5.589855 TCATATGCTGATCCGAAAACAACAT 59.410 36.000 0.00 0.00 0.00 2.71
2201 2245 3.557577 TGCTGATCCGAAAACAACATG 57.442 42.857 0.00 0.00 0.00 3.21
2202 2246 2.884012 TGCTGATCCGAAAACAACATGT 59.116 40.909 0.00 0.00 0.00 3.21
2203 2247 3.058293 TGCTGATCCGAAAACAACATGTC 60.058 43.478 0.00 0.00 0.00 3.06
2204 2248 3.670627 GCTGATCCGAAAACAACATGTCC 60.671 47.826 0.00 0.00 0.00 4.02
2205 2249 3.481453 TGATCCGAAAACAACATGTCCA 58.519 40.909 0.00 0.00 0.00 4.02
2206 2250 3.252215 TGATCCGAAAACAACATGTCCAC 59.748 43.478 0.00 0.00 0.00 4.02
2207 2251 2.925724 TCCGAAAACAACATGTCCACT 58.074 42.857 0.00 0.00 0.00 4.00
2208 2252 3.283751 TCCGAAAACAACATGTCCACTT 58.716 40.909 0.00 0.00 0.00 3.16
2209 2253 3.314080 TCCGAAAACAACATGTCCACTTC 59.686 43.478 0.00 0.00 0.00 3.01
2210 2254 3.288242 CGAAAACAACATGTCCACTTCG 58.712 45.455 14.60 14.60 0.00 3.79
2211 2255 3.001838 CGAAAACAACATGTCCACTTCGA 59.998 43.478 19.96 0.00 33.72 3.71
2212 2256 4.319477 CGAAAACAACATGTCCACTTCGAT 60.319 41.667 19.96 0.00 33.72 3.59
2213 2257 4.749245 AAACAACATGTCCACTTCGATC 57.251 40.909 0.00 0.00 0.00 3.69
2214 2258 3.685139 ACAACATGTCCACTTCGATCT 57.315 42.857 0.00 0.00 0.00 2.75
2215 2259 3.329386 ACAACATGTCCACTTCGATCTG 58.671 45.455 0.00 0.00 0.00 2.90
2216 2260 3.006859 ACAACATGTCCACTTCGATCTGA 59.993 43.478 0.00 0.00 0.00 3.27
2217 2261 3.961480 ACATGTCCACTTCGATCTGAA 57.039 42.857 0.00 0.00 34.74 3.02
2218 2262 4.271696 ACATGTCCACTTCGATCTGAAA 57.728 40.909 0.00 0.00 35.79 2.69
2219 2263 4.248859 ACATGTCCACTTCGATCTGAAAG 58.751 43.478 0.00 0.00 35.79 2.62
2238 2282 9.736414 TCTGAAAGATCTCAGATGAATTTTTCT 57.264 29.630 9.92 0.00 45.45 2.52
2244 2288 9.781633 AGATCTCAGATGAATTTTTCTATGGAG 57.218 33.333 0.00 0.00 0.00 3.86
2245 2289 9.775854 GATCTCAGATGAATTTTTCTATGGAGA 57.224 33.333 0.00 0.00 0.00 3.71
2247 2291 9.610705 TCTCAGATGAATTTTTCTATGGAGAAG 57.389 33.333 0.00 0.00 42.66 2.85
2248 2292 9.610705 CTCAGATGAATTTTTCTATGGAGAAGA 57.389 33.333 0.00 0.00 42.66 2.87
2249 2293 9.964354 TCAGATGAATTTTTCTATGGAGAAGAA 57.036 29.630 0.00 0.00 42.66 2.52
2265 2309 8.260099 TGGAGAAGAATCATATGAATGTCTCT 57.740 34.615 23.91 16.69 33.71 3.10
2266 2310 8.148999 TGGAGAAGAATCATATGAATGTCTCTG 58.851 37.037 23.91 0.00 33.71 3.35
2267 2311 8.366401 GGAGAAGAATCATATGAATGTCTCTGA 58.634 37.037 23.91 0.17 33.71 3.27
2268 2312 9.414295 GAGAAGAATCATATGAATGTCTCTGAG 57.586 37.037 20.76 0.00 31.93 3.35
2269 2313 9.145442 AGAAGAATCATATGAATGTCTCTGAGA 57.855 33.333 9.99 2.58 34.50 3.27
2270 2314 9.932207 GAAGAATCATATGAATGTCTCTGAGAT 57.068 33.333 9.99 0.00 34.50 2.75
2275 2319 7.600960 TCATATGAATGTCTCTGAGATAGTGC 58.399 38.462 11.07 2.83 34.50 4.40
2276 2320 7.450944 TCATATGAATGTCTCTGAGATAGTGCT 59.549 37.037 11.07 0.04 34.50 4.40
2277 2321 5.929058 TGAATGTCTCTGAGATAGTGCTT 57.071 39.130 11.07 0.00 0.00 3.91
2278 2322 6.291648 TGAATGTCTCTGAGATAGTGCTTT 57.708 37.500 11.07 2.31 0.00 3.51
2279 2323 6.705302 TGAATGTCTCTGAGATAGTGCTTTT 58.295 36.000 11.07 0.00 0.00 2.27
2280 2324 6.592994 TGAATGTCTCTGAGATAGTGCTTTTG 59.407 38.462 11.07 0.00 0.00 2.44
2296 2340 5.768333 GCTTTTGCAATATCACTCCAAAC 57.232 39.130 0.00 0.00 46.58 2.93
2297 2341 5.473039 GCTTTTGCAATATCACTCCAAACT 58.527 37.500 0.00 0.00 46.58 2.66
2298 2342 6.620678 GCTTTTGCAATATCACTCCAAACTA 58.379 36.000 0.00 0.00 46.58 2.24
2299 2343 7.090173 GCTTTTGCAATATCACTCCAAACTAA 58.910 34.615 0.00 0.00 46.58 2.24
2300 2344 7.761249 GCTTTTGCAATATCACTCCAAACTAAT 59.239 33.333 0.00 0.00 46.58 1.73
2301 2345 9.643693 CTTTTGCAATATCACTCCAAACTAATT 57.356 29.630 0.00 0.00 0.00 1.40
2302 2346 9.995003 TTTTGCAATATCACTCCAAACTAATTT 57.005 25.926 0.00 0.00 0.00 1.82
2303 2347 9.995003 TTTGCAATATCACTCCAAACTAATTTT 57.005 25.926 0.00 0.00 0.00 1.82
2304 2348 9.995003 TTGCAATATCACTCCAAACTAATTTTT 57.005 25.926 0.00 0.00 0.00 1.94
2326 2370 7.513190 TTTTTATTGTCCAGTTGAACAAACG 57.487 32.000 0.00 0.00 44.04 3.60
2327 2371 6.438259 TTTATTGTCCAGTTGAACAAACGA 57.562 33.333 0.00 0.00 44.04 3.85
2328 2372 4.552166 ATTGTCCAGTTGAACAAACGAG 57.448 40.909 0.00 0.00 44.04 4.18
2329 2373 2.980568 TGTCCAGTTGAACAAACGAGT 58.019 42.857 0.00 0.00 44.04 4.18
2330 2374 3.340034 TGTCCAGTTGAACAAACGAGTT 58.660 40.909 0.00 0.00 44.04 3.01
2331 2375 3.372822 TGTCCAGTTGAACAAACGAGTTC 59.627 43.478 0.00 11.33 46.22 3.01
2366 2410 7.637709 AAAAACAGTTCATAAAGAATTCGGC 57.362 32.000 0.00 0.00 38.76 5.54
2367 2411 5.957842 AACAGTTCATAAAGAATTCGGCA 57.042 34.783 0.00 0.00 38.76 5.69
2368 2412 5.296813 ACAGTTCATAAAGAATTCGGCAC 57.703 39.130 0.00 0.00 38.76 5.01
2369 2413 4.759693 ACAGTTCATAAAGAATTCGGCACA 59.240 37.500 0.00 0.00 38.76 4.57
2370 2414 5.240623 ACAGTTCATAAAGAATTCGGCACAA 59.759 36.000 0.00 0.00 38.76 3.33
2371 2415 5.796935 CAGTTCATAAAGAATTCGGCACAAG 59.203 40.000 0.00 0.00 38.76 3.16
2372 2416 5.473504 AGTTCATAAAGAATTCGGCACAAGT 59.526 36.000 0.00 0.00 38.76 3.16
2373 2417 5.957842 TCATAAAGAATTCGGCACAAGTT 57.042 34.783 0.00 0.00 0.00 2.66
2374 2418 7.174253 AGTTCATAAAGAATTCGGCACAAGTTA 59.826 33.333 0.00 0.00 38.76 2.24
2375 2419 7.441890 TCATAAAGAATTCGGCACAAGTTAA 57.558 32.000 0.00 0.00 0.00 2.01
2376 2420 8.050778 TCATAAAGAATTCGGCACAAGTTAAT 57.949 30.769 0.00 0.00 0.00 1.40
2377 2421 8.181573 TCATAAAGAATTCGGCACAAGTTAATC 58.818 33.333 0.00 0.00 0.00 1.75
2378 2422 4.965119 AGAATTCGGCACAAGTTAATCC 57.035 40.909 0.00 0.00 0.00 3.01
2379 2423 3.694566 AGAATTCGGCACAAGTTAATCCC 59.305 43.478 0.00 0.00 0.00 3.85
2380 2424 2.570415 TTCGGCACAAGTTAATCCCA 57.430 45.000 0.00 0.00 0.00 4.37
2381 2425 2.570415 TCGGCACAAGTTAATCCCAA 57.430 45.000 0.00 0.00 0.00 4.12
2382 2426 3.080300 TCGGCACAAGTTAATCCCAAT 57.920 42.857 0.00 0.00 0.00 3.16
2383 2427 3.426615 TCGGCACAAGTTAATCCCAATT 58.573 40.909 0.00 0.00 0.00 2.32
2384 2428 3.192422 TCGGCACAAGTTAATCCCAATTG 59.808 43.478 0.00 0.00 0.00 2.32
2385 2429 3.192422 CGGCACAAGTTAATCCCAATTGA 59.808 43.478 7.12 0.00 0.00 2.57
2386 2430 4.675146 CGGCACAAGTTAATCCCAATTGAG 60.675 45.833 7.12 0.00 0.00 3.02
2387 2431 4.220602 GGCACAAGTTAATCCCAATTGAGT 59.779 41.667 7.12 0.00 0.00 3.41
2388 2432 5.417580 GGCACAAGTTAATCCCAATTGAGTA 59.582 40.000 7.12 0.00 0.00 2.59
2389 2433 6.404734 GGCACAAGTTAATCCCAATTGAGTAG 60.405 42.308 7.12 0.00 0.00 2.57
2390 2434 6.374333 GCACAAGTTAATCCCAATTGAGTAGA 59.626 38.462 7.12 0.00 0.00 2.59
2391 2435 7.626452 GCACAAGTTAATCCCAATTGAGTAGAC 60.626 40.741 7.12 0.00 0.00 2.59
2392 2436 7.390440 CACAAGTTAATCCCAATTGAGTAGACA 59.610 37.037 7.12 0.00 0.00 3.41
2393 2437 8.109634 ACAAGTTAATCCCAATTGAGTAGACAT 58.890 33.333 7.12 0.00 0.00 3.06
2394 2438 8.616076 CAAGTTAATCCCAATTGAGTAGACATC 58.384 37.037 7.12 0.00 0.00 3.06
2395 2439 7.861629 AGTTAATCCCAATTGAGTAGACATCA 58.138 34.615 7.12 0.00 0.00 3.07
2396 2440 7.989741 AGTTAATCCCAATTGAGTAGACATCAG 59.010 37.037 7.12 0.00 0.00 2.90
2397 2441 4.142609 TCCCAATTGAGTAGACATCAGC 57.857 45.455 7.12 0.00 0.00 4.26
2398 2442 3.118261 TCCCAATTGAGTAGACATCAGCC 60.118 47.826 7.12 0.00 0.00 4.85
2399 2443 3.209410 CCAATTGAGTAGACATCAGCCC 58.791 50.000 7.12 0.00 0.00 5.19
2400 2444 3.370846 CCAATTGAGTAGACATCAGCCCA 60.371 47.826 7.12 0.00 0.00 5.36
2401 2445 4.458397 CAATTGAGTAGACATCAGCCCAT 58.542 43.478 0.00 0.00 0.00 4.00
2402 2446 3.548745 TTGAGTAGACATCAGCCCATG 57.451 47.619 0.00 0.00 0.00 3.66
2403 2447 1.139654 TGAGTAGACATCAGCCCATGC 59.860 52.381 0.00 0.00 37.95 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.992217 ACTCTCAGTTTTATTCTTGCGAACT 59.008 36.000 0.00 0.00 30.67 3.01
1 2 6.229561 ACTCTCAGTTTTATTCTTGCGAAC 57.770 37.500 0.00 0.00 30.67 3.95
2 3 6.861065 AACTCTCAGTTTTATTCTTGCGAA 57.139 33.333 0.00 0.00 34.11 4.70
3 4 6.861065 AAACTCTCAGTTTTATTCTTGCGA 57.139 33.333 0.00 0.00 45.38 5.10
4 5 7.797819 ACTAAACTCTCAGTTTTATTCTTGCG 58.202 34.615 6.94 0.00 45.38 4.85
5 6 9.952188 AAACTAAACTCTCAGTTTTATTCTTGC 57.048 29.630 6.94 0.00 45.38 4.01
11 12 9.899226 GCATTCAAACTAAACTCTCAGTTTTAT 57.101 29.630 6.94 0.00 45.38 1.40
12 13 8.898761 TGCATTCAAACTAAACTCTCAGTTTTA 58.101 29.630 6.94 0.00 45.38 1.52
13 14 7.771183 TGCATTCAAACTAAACTCTCAGTTTT 58.229 30.769 6.94 0.00 45.38 2.43
15 16 6.942532 TGCATTCAAACTAAACTCTCAGTT 57.057 33.333 0.00 0.00 40.80 3.16
16 17 6.488006 ACATGCATTCAAACTAAACTCTCAGT 59.512 34.615 0.00 0.00 0.00 3.41
17 18 6.906659 ACATGCATTCAAACTAAACTCTCAG 58.093 36.000 0.00 0.00 0.00 3.35
18 19 6.882610 ACATGCATTCAAACTAAACTCTCA 57.117 33.333 0.00 0.00 0.00 3.27
19 20 8.034058 ACTACATGCATTCAAACTAAACTCTC 57.966 34.615 0.00 0.00 0.00 3.20
20 21 7.986085 ACTACATGCATTCAAACTAAACTCT 57.014 32.000 0.00 0.00 0.00 3.24
21 22 8.936864 AGTACTACATGCATTCAAACTAAACTC 58.063 33.333 0.00 0.00 0.00 3.01
22 23 8.848474 AGTACTACATGCATTCAAACTAAACT 57.152 30.769 0.00 0.00 0.00 2.66
23 24 8.175716 GGAGTACTACATGCATTCAAACTAAAC 58.824 37.037 0.00 0.00 0.00 2.01
24 25 7.335924 GGGAGTACTACATGCATTCAAACTAAA 59.664 37.037 7.57 0.00 0.00 1.85
25 26 6.821665 GGGAGTACTACATGCATTCAAACTAA 59.178 38.462 7.57 0.00 0.00 2.24
26 27 6.156256 AGGGAGTACTACATGCATTCAAACTA 59.844 38.462 7.57 0.00 0.00 2.24
27 28 5.045578 AGGGAGTACTACATGCATTCAAACT 60.046 40.000 7.57 0.00 0.00 2.66
28 29 5.186198 AGGGAGTACTACATGCATTCAAAC 58.814 41.667 7.57 0.00 0.00 2.93
29 30 5.428253 GAGGGAGTACTACATGCATTCAAA 58.572 41.667 7.57 0.00 0.00 2.69
30 31 4.141711 GGAGGGAGTACTACATGCATTCAA 60.142 45.833 6.37 0.00 0.00 2.69
31 32 3.388024 GGAGGGAGTACTACATGCATTCA 59.612 47.826 6.37 0.00 0.00 2.57
32 33 3.553096 CGGAGGGAGTACTACATGCATTC 60.553 52.174 11.99 0.00 0.00 2.67
33 34 2.365617 CGGAGGGAGTACTACATGCATT 59.634 50.000 11.99 0.00 0.00 3.56
34 35 1.964223 CGGAGGGAGTACTACATGCAT 59.036 52.381 11.99 0.00 0.00 3.96
35 36 1.341679 ACGGAGGGAGTACTACATGCA 60.342 52.381 11.99 0.00 0.00 3.96
36 37 1.400737 ACGGAGGGAGTACTACATGC 58.599 55.000 7.57 3.96 0.00 4.06
37 38 3.700038 AGAAACGGAGGGAGTACTACATG 59.300 47.826 7.57 0.00 0.00 3.21
38 39 3.978610 AGAAACGGAGGGAGTACTACAT 58.021 45.455 7.57 0.00 0.00 2.29
39 40 3.446442 AGAAACGGAGGGAGTACTACA 57.554 47.619 7.57 0.00 0.00 2.74
40 41 5.904362 TTTAGAAACGGAGGGAGTACTAC 57.096 43.478 0.00 0.00 0.00 2.73
41 42 8.773033 AATATTTAGAAACGGAGGGAGTACTA 57.227 34.615 0.00 0.00 0.00 1.82
42 43 7.672122 AATATTTAGAAACGGAGGGAGTACT 57.328 36.000 0.00 0.00 0.00 2.73
43 44 7.767659 ACAAATATTTAGAAACGGAGGGAGTAC 59.232 37.037 0.00 0.00 0.00 2.73
44 45 7.854337 ACAAATATTTAGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
45 46 6.718294 ACAAATATTTAGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
46 47 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
47 48 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
48 49 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
80 81 8.774586 GCTCCGTATGTAATCACTTATTGAAAT 58.225 33.333 0.00 0.00 37.92 2.17
81 82 7.766738 TGCTCCGTATGTAATCACTTATTGAAA 59.233 33.333 0.00 0.00 37.92 2.69
82 83 7.269316 TGCTCCGTATGTAATCACTTATTGAA 58.731 34.615 0.00 0.00 37.92 2.69
83 84 6.811954 TGCTCCGTATGTAATCACTTATTGA 58.188 36.000 0.00 0.00 39.11 2.57
84 85 7.477144 TTGCTCCGTATGTAATCACTTATTG 57.523 36.000 0.00 0.00 0.00 1.90
85 86 8.500753 TTTTGCTCCGTATGTAATCACTTATT 57.499 30.769 0.00 0.00 0.00 1.40
86 87 8.559536 CATTTTGCTCCGTATGTAATCACTTAT 58.440 33.333 0.00 0.00 0.00 1.73
87 88 7.766738 TCATTTTGCTCCGTATGTAATCACTTA 59.233 33.333 0.00 0.00 0.00 2.24
88 89 6.597672 TCATTTTGCTCCGTATGTAATCACTT 59.402 34.615 0.00 0.00 0.00 3.16
89 90 6.112734 TCATTTTGCTCCGTATGTAATCACT 58.887 36.000 0.00 0.00 0.00 3.41
90 91 6.358118 TCATTTTGCTCCGTATGTAATCAC 57.642 37.500 0.00 0.00 0.00 3.06
91 92 6.993786 TTCATTTTGCTCCGTATGTAATCA 57.006 33.333 0.00 0.00 0.00 2.57
92 93 7.639039 TCATTCATTTTGCTCCGTATGTAATC 58.361 34.615 0.00 0.00 0.00 1.75
93 94 7.566760 TCATTCATTTTGCTCCGTATGTAAT 57.433 32.000 0.00 0.00 0.00 1.89
94 95 6.993786 TCATTCATTTTGCTCCGTATGTAA 57.006 33.333 0.00 0.00 0.00 2.41
95 96 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
96 97 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
97 98 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
98 99 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
99 100 9.725019 ATATAGATTCATTCATTTTGCTCCGTA 57.275 29.630 0.00 0.00 0.00 4.02
100 101 6.949352 ATAGATTCATTCATTTTGCTCCGT 57.051 33.333 0.00 0.00 0.00 4.69
101 102 9.552114 GAATATAGATTCATTCATTTTGCTCCG 57.448 33.333 5.20 0.00 41.12 4.63
135 136 9.511272 ACTACCACATACGAATGTATATAGACA 57.489 33.333 2.07 2.07 44.70 3.41
136 137 9.985318 GACTACCACATACGAATGTATATAGAC 57.015 37.037 0.00 0.00 44.70 2.59
137 138 9.170734 GGACTACCACATACGAATGTATATAGA 57.829 37.037 0.00 0.00 44.70 1.98
138 139 8.953313 TGGACTACCACATACGAATGTATATAG 58.047 37.037 0.00 0.00 44.70 1.31
139 140 8.866970 TGGACTACCACATACGAATGTATATA 57.133 34.615 0.00 0.00 44.70 0.86
140 141 7.770366 TGGACTACCACATACGAATGTATAT 57.230 36.000 0.00 0.00 44.70 0.86
174 175 9.947433 TCCGTTCCTAAATATTTGTCTTTTAGA 57.053 29.630 11.05 0.00 35.79 2.10
176 177 9.947433 TCTCCGTTCCTAAATATTTGTCTTTTA 57.053 29.630 11.05 0.00 0.00 1.52
177 178 8.857694 TCTCCGTTCCTAAATATTTGTCTTTT 57.142 30.769 11.05 0.00 0.00 2.27
178 179 8.319146 TCTCTCCGTTCCTAAATATTTGTCTTT 58.681 33.333 11.05 0.00 0.00 2.52
179 180 7.848128 TCTCTCCGTTCCTAAATATTTGTCTT 58.152 34.615 11.05 0.00 0.00 3.01
180 181 7.124448 ACTCTCTCCGTTCCTAAATATTTGTCT 59.876 37.037 11.05 0.00 0.00 3.41
181 182 7.266400 ACTCTCTCCGTTCCTAAATATTTGTC 58.734 38.462 11.05 0.00 0.00 3.18
182 183 7.184067 ACTCTCTCCGTTCCTAAATATTTGT 57.816 36.000 11.05 0.00 0.00 2.83
186 187 9.756571 ACATATACTCTCTCCGTTCCTAAATAT 57.243 33.333 0.00 0.00 0.00 1.28
187 188 9.584008 AACATATACTCTCTCCGTTCCTAAATA 57.416 33.333 0.00 0.00 0.00 1.40
188 189 8.480133 AACATATACTCTCTCCGTTCCTAAAT 57.520 34.615 0.00 0.00 0.00 1.40
189 190 7.893124 AACATATACTCTCTCCGTTCCTAAA 57.107 36.000 0.00 0.00 0.00 1.85
190 191 7.893124 AAACATATACTCTCTCCGTTCCTAA 57.107 36.000 0.00 0.00 0.00 2.69
191 192 7.341256 ACAAAACATATACTCTCTCCGTTCCTA 59.659 37.037 0.00 0.00 0.00 2.94
192 193 6.154706 ACAAAACATATACTCTCTCCGTTCCT 59.845 38.462 0.00 0.00 0.00 3.36
193 194 6.338937 ACAAAACATATACTCTCTCCGTTCC 58.661 40.000 0.00 0.00 0.00 3.62
194 195 7.033791 TGACAAAACATATACTCTCTCCGTTC 58.966 38.462 0.00 0.00 0.00 3.95
195 196 6.931838 TGACAAAACATATACTCTCTCCGTT 58.068 36.000 0.00 0.00 0.00 4.44
196 197 6.525578 TGACAAAACATATACTCTCTCCGT 57.474 37.500 0.00 0.00 0.00 4.69
197 198 8.425577 AAATGACAAAACATATACTCTCTCCG 57.574 34.615 0.00 0.00 0.00 4.63
287 288 2.094130 AGCCGAGTGAGCCTTTACTTAC 60.094 50.000 0.00 0.00 0.00 2.34
314 315 2.627515 TAACATGCTCAGAGCCATCC 57.372 50.000 20.16 0.00 41.51 3.51
413 414 6.445357 AAAATACCGCGGAAATATTTGTCT 57.555 33.333 35.90 13.46 30.73 3.41
433 434 7.847078 CGTCAAACAGTGTTATAACTCGAAAAA 59.153 33.333 16.33 0.00 0.00 1.94
578 608 1.079405 TGGCGACGTCAAATCCCTC 60.079 57.895 17.16 0.00 0.00 4.30
593 623 0.598065 AGAATTCTGCGTTTGGTGGC 59.402 50.000 7.30 0.00 0.00 5.01
597 627 3.419915 CGATTGAGAATTCTGCGTTTGG 58.580 45.455 14.00 0.00 0.00 3.28
647 677 0.656259 CCGTGAGAATCGAGTCGCTA 59.344 55.000 17.14 1.88 38.61 4.26
675 705 2.614057 GGTATTTCTGCTCCATTGGTCG 59.386 50.000 1.86 0.00 0.00 4.79
690 720 3.122323 CGCGCGGGTGTGGTATTT 61.122 61.111 24.84 0.00 0.00 1.40
775 805 2.403132 GATCATGGCGAAGGGAGGGG 62.403 65.000 0.00 0.00 0.00 4.79
803 833 4.735132 TTCGGCGCGAGGAGGTTG 62.735 66.667 12.10 0.00 37.14 3.77
863 893 0.790207 CAAACGAGTCATGTCACGGG 59.210 55.000 13.31 0.00 0.00 5.28
900 930 2.558378 GGGTTTATAAGGCGTGGAGAC 58.442 52.381 0.00 0.00 0.00 3.36
925 955 0.458669 CTGAGGTTGCATTGCATCCC 59.541 55.000 27.42 21.86 46.23 3.85
949 983 1.417577 TTGTCGTGTCGTGTGTGCTG 61.418 55.000 0.00 0.00 0.00 4.41
966 1000 5.296813 AGCAAGCTTCGTTAATTAGGTTG 57.703 39.130 15.90 15.90 45.39 3.77
967 1001 5.064834 GCTAGCAAGCTTCGTTAATTAGGTT 59.935 40.000 10.63 0.00 45.85 3.50
1005 1039 4.467107 ACCGCTCCCTCCCTCTCC 62.467 72.222 0.00 0.00 0.00 3.71
1038 1072 2.123632 AGCTTCAGGCCCTCCTCA 59.876 61.111 0.00 0.00 41.93 3.86
1194 1228 1.302351 GCTCACCTGCTTGCTCACT 60.302 57.895 0.00 0.00 0.00 3.41
1215 1249 3.001902 GCCGGTGATCTCCACGTCA 62.002 63.158 13.99 0.00 46.62 4.35
1243 1277 1.471684 GAGCTTCTTGATGCACTTGGG 59.528 52.381 10.39 0.00 0.00 4.12
1302 1336 0.797249 CGACGGTGATCTCGTTGACC 60.797 60.000 18.28 5.76 42.73 4.02
1538 1572 1.899814 TGGTCGTAGCCTTGAGAACAT 59.100 47.619 0.00 0.00 0.00 2.71
1664 1700 7.569226 ATCAATAAAATGACACGCAAACTTTGC 60.569 33.333 15.40 15.40 41.77 3.68
1667 1703 8.511321 TCTATCAATAAAATGACACGCAAACTT 58.489 29.630 0.00 0.00 30.82 2.66
1669 1705 8.667987 TTCTATCAATAAAATGACACGCAAAC 57.332 30.769 0.00 0.00 30.82 2.93
1670 1706 9.853555 ATTTCTATCAATAAAATGACACGCAAA 57.146 25.926 0.00 0.00 30.82 3.68
1695 1731 8.687292 TGTACCACATCTCGTACTATTCTAAT 57.313 34.615 0.00 0.00 36.59 1.73
1696 1732 8.400947 GTTGTACCACATCTCGTACTATTCTAA 58.599 37.037 0.00 0.00 36.59 2.10
1697 1733 7.553760 TGTTGTACCACATCTCGTACTATTCTA 59.446 37.037 0.00 0.00 36.59 2.10
1698 1734 6.376299 TGTTGTACCACATCTCGTACTATTCT 59.624 38.462 0.00 0.00 36.59 2.40
1699 1735 6.471519 GTGTTGTACCACATCTCGTACTATTC 59.528 42.308 2.74 0.00 36.59 1.75
1700 1736 6.071784 TGTGTTGTACCACATCTCGTACTATT 60.072 38.462 2.74 0.00 40.30 1.73
1702 1738 4.761227 TGTGTTGTACCACATCTCGTACTA 59.239 41.667 2.74 0.00 40.30 1.82
1704 1740 3.904571 TGTGTTGTACCACATCTCGTAC 58.095 45.455 2.74 0.00 40.30 3.67
1734 1774 1.081242 CATGTTCACGCCCTTGTGC 60.081 57.895 0.00 0.00 39.73 4.57
1736 1776 0.667993 CAACATGTTCACGCCCTTGT 59.332 50.000 8.48 0.00 0.00 3.16
1748 1788 1.344438 TCTCTGCTTCGGACAACATGT 59.656 47.619 0.00 0.00 0.00 3.21
1752 1792 1.000163 TGTCTCTCTGCTTCGGACAAC 60.000 52.381 0.00 0.00 34.58 3.32
1753 1793 1.328279 TGTCTCTCTGCTTCGGACAA 58.672 50.000 0.00 0.00 34.58 3.18
1758 1798 0.820226 TCCCATGTCTCTCTGCTTCG 59.180 55.000 0.00 0.00 0.00 3.79
1765 1805 0.033228 CCGAGCATCCCATGTCTCTC 59.967 60.000 0.00 0.00 33.90 3.20
1767 1807 0.249657 GACCGAGCATCCCATGTCTC 60.250 60.000 0.00 0.00 33.23 3.36
1769 1809 1.227674 GGACCGAGCATCCCATGTC 60.228 63.158 0.00 0.00 0.00 3.06
1816 1860 1.500474 TGGGCTAGTTCTCAGGATGG 58.500 55.000 0.00 0.00 36.16 3.51
1850 1894 6.351371 GGTTCTGAATCTAGAGATGTTGGTCA 60.351 42.308 0.00 0.00 34.49 4.02
1863 1907 2.758979 GGTGTCCTCGGTTCTGAATCTA 59.241 50.000 0.00 0.00 0.00 1.98
1868 1912 2.927580 GCGGTGTCCTCGGTTCTGA 61.928 63.158 0.00 0.00 0.00 3.27
1871 1915 3.966026 CTCGCGGTGTCCTCGGTTC 62.966 68.421 6.13 0.00 0.00 3.62
1875 1919 4.717629 TTGCTCGCGGTGTCCTCG 62.718 66.667 6.13 0.00 0.00 4.63
1902 1946 0.649475 CGCTCTCTTTCATGAAGGCG 59.351 55.000 12.50 16.49 37.27 5.52
1910 1954 2.126463 CGGCGTCGCTCTCTTTCA 60.126 61.111 18.11 0.00 0.00 2.69
1911 1955 1.007336 TTTCGGCGTCGCTCTCTTTC 61.007 55.000 18.11 0.00 36.13 2.62
1914 1958 2.126424 GTTTCGGCGTCGCTCTCT 60.126 61.111 18.11 0.00 36.13 3.10
1938 1982 0.869454 CTCTTCGAGCATCAGACGGC 60.869 60.000 0.00 0.00 33.17 5.68
1944 1988 1.340399 ATGCCCCTCTTCGAGCATCA 61.340 55.000 2.03 0.00 42.05 3.07
1948 1992 0.032815 GTCTATGCCCCTCTTCGAGC 59.967 60.000 0.00 0.00 0.00 5.03
1949 1993 0.312416 CGTCTATGCCCCTCTTCGAG 59.688 60.000 0.00 0.00 0.00 4.04
1950 1994 0.106868 TCGTCTATGCCCCTCTTCGA 60.107 55.000 0.00 0.00 0.00 3.71
1951 1995 0.030908 GTCGTCTATGCCCCTCTTCG 59.969 60.000 0.00 0.00 0.00 3.79
1952 1996 0.030908 CGTCGTCTATGCCCCTCTTC 59.969 60.000 0.00 0.00 0.00 2.87
1953 1997 1.392710 CCGTCGTCTATGCCCCTCTT 61.393 60.000 0.00 0.00 0.00 2.85
1954 1998 1.828660 CCGTCGTCTATGCCCCTCT 60.829 63.158 0.00 0.00 0.00 3.69
1955 1999 2.728817 CCGTCGTCTATGCCCCTC 59.271 66.667 0.00 0.00 0.00 4.30
1956 2000 3.537874 GCCGTCGTCTATGCCCCT 61.538 66.667 0.00 0.00 0.00 4.79
1957 2001 4.603946 GGCCGTCGTCTATGCCCC 62.604 72.222 0.00 0.00 37.94 5.80
1958 2002 4.944372 CGGCCGTCGTCTATGCCC 62.944 72.222 19.50 0.00 40.87 5.36
1975 2019 0.033504 TCTCTTGGAGGCGTTGTCAC 59.966 55.000 0.00 0.00 0.00 3.67
1976 2020 0.318441 CTCTCTTGGAGGCGTTGTCA 59.682 55.000 0.00 0.00 38.35 3.58
1977 2021 0.603569 TCTCTCTTGGAGGCGTTGTC 59.396 55.000 0.00 0.00 42.10 3.18
1978 2022 0.318762 GTCTCTCTTGGAGGCGTTGT 59.681 55.000 0.00 0.00 42.10 3.32
1979 2023 3.129792 GTCTCTCTTGGAGGCGTTG 57.870 57.895 0.00 0.00 42.10 4.10
1983 2027 2.185608 GCCGTCTCTCTTGGAGGC 59.814 66.667 0.00 0.00 42.80 4.70
1984 2028 2.492090 CGCCGTCTCTCTTGGAGG 59.508 66.667 0.00 0.00 42.10 4.30
1985 2029 2.202676 GCGCCGTCTCTCTTGGAG 60.203 66.667 0.00 0.00 43.12 3.86
1986 2030 3.760035 GGCGCCGTCTCTCTTGGA 61.760 66.667 12.58 0.00 0.00 3.53
1987 2031 4.821589 GGGCGCCGTCTCTCTTGG 62.822 72.222 22.54 0.00 0.00 3.61
2001 2045 4.545706 TGATGATGACCCGCGGGC 62.546 66.667 43.58 33.56 39.32 6.13
2002 2046 2.180204 GTTGATGATGACCCGCGGG 61.180 63.158 42.17 42.17 42.03 6.13
2003 2047 2.525248 CGTTGATGATGACCCGCGG 61.525 63.158 21.04 21.04 0.00 6.46
2004 2048 3.005898 CGTTGATGATGACCCGCG 58.994 61.111 0.00 0.00 0.00 6.46
2005 2049 1.439353 ATGCGTTGATGATGACCCGC 61.439 55.000 0.00 0.00 41.34 6.13
2006 2050 0.583438 GATGCGTTGATGATGACCCG 59.417 55.000 0.00 0.00 0.00 5.28
2007 2051 1.959042 AGATGCGTTGATGATGACCC 58.041 50.000 0.00 0.00 0.00 4.46
2008 2052 2.679837 ACAAGATGCGTTGATGATGACC 59.320 45.455 0.67 0.00 0.00 4.02
2009 2053 3.125829 ACACAAGATGCGTTGATGATGAC 59.874 43.478 0.67 0.00 0.00 3.06
2010 2054 3.337358 ACACAAGATGCGTTGATGATGA 58.663 40.909 0.67 0.00 0.00 2.92
2011 2055 3.373130 AGACACAAGATGCGTTGATGATG 59.627 43.478 0.67 0.00 0.00 3.07
2012 2056 3.603532 AGACACAAGATGCGTTGATGAT 58.396 40.909 0.67 0.00 0.00 2.45
2013 2057 2.995939 GAGACACAAGATGCGTTGATGA 59.004 45.455 0.67 0.00 0.00 2.92
2014 2058 2.094894 GGAGACACAAGATGCGTTGATG 59.905 50.000 0.67 0.00 0.00 3.07
2015 2059 2.027745 AGGAGACACAAGATGCGTTGAT 60.028 45.455 0.67 0.00 0.00 2.57
2016 2060 1.344438 AGGAGACACAAGATGCGTTGA 59.656 47.619 0.67 0.00 0.00 3.18
2017 2061 1.800805 AGGAGACACAAGATGCGTTG 58.199 50.000 0.00 0.00 0.00 4.10
2018 2062 2.146342 CAAGGAGACACAAGATGCGTT 58.854 47.619 0.00 0.00 0.00 4.84
2019 2063 1.070758 ACAAGGAGACACAAGATGCGT 59.929 47.619 0.00 0.00 0.00 5.24
2020 2064 1.800805 ACAAGGAGACACAAGATGCG 58.199 50.000 0.00 0.00 0.00 4.73
2021 2065 3.664107 TGTACAAGGAGACACAAGATGC 58.336 45.455 0.00 0.00 0.00 3.91
2022 2066 5.240891 ACATGTACAAGGAGACACAAGATG 58.759 41.667 0.00 0.00 0.00 2.90
2023 2067 5.489792 ACATGTACAAGGAGACACAAGAT 57.510 39.130 0.00 0.00 0.00 2.40
2024 2068 4.955811 ACATGTACAAGGAGACACAAGA 57.044 40.909 0.00 0.00 0.00 3.02
2025 2069 6.377327 AAAACATGTACAAGGAGACACAAG 57.623 37.500 0.00 0.00 0.00 3.16
2026 2070 6.601613 AGAAAAACATGTACAAGGAGACACAA 59.398 34.615 0.00 0.00 0.00 3.33
2027 2071 6.119536 AGAAAAACATGTACAAGGAGACACA 58.880 36.000 0.00 0.00 0.00 3.72
2028 2072 6.619801 AGAAAAACATGTACAAGGAGACAC 57.380 37.500 0.00 0.00 0.00 3.67
2029 2073 6.826231 TCAAGAAAAACATGTACAAGGAGACA 59.174 34.615 0.00 0.00 0.00 3.41
2030 2074 7.259290 TCAAGAAAAACATGTACAAGGAGAC 57.741 36.000 0.00 0.00 0.00 3.36
2031 2075 9.567776 TTATCAAGAAAAACATGTACAAGGAGA 57.432 29.630 0.00 0.00 0.00 3.71
2032 2076 9.831737 CTTATCAAGAAAAACATGTACAAGGAG 57.168 33.333 0.00 0.00 0.00 3.69
2033 2077 9.349713 ACTTATCAAGAAAAACATGTACAAGGA 57.650 29.630 0.00 0.00 0.00 3.36
2034 2078 9.965824 AACTTATCAAGAAAAACATGTACAAGG 57.034 29.630 0.00 0.00 0.00 3.61
2067 2111 6.331369 TGGTTCTAATGCTTCCTCAAAAAG 57.669 37.500 0.00 0.00 0.00 2.27
2068 2112 6.721208 AGATGGTTCTAATGCTTCCTCAAAAA 59.279 34.615 0.00 0.00 0.00 1.94
2069 2113 6.248433 AGATGGTTCTAATGCTTCCTCAAAA 58.752 36.000 0.00 0.00 0.00 2.44
2070 2114 5.819991 AGATGGTTCTAATGCTTCCTCAAA 58.180 37.500 0.00 0.00 0.00 2.69
2071 2115 5.441718 AGATGGTTCTAATGCTTCCTCAA 57.558 39.130 0.00 0.00 0.00 3.02
2072 2116 5.188434 CAAGATGGTTCTAATGCTTCCTCA 58.812 41.667 0.00 0.00 0.00 3.86
2073 2117 5.189180 ACAAGATGGTTCTAATGCTTCCTC 58.811 41.667 0.00 0.00 0.00 3.71
2074 2118 5.184892 ACAAGATGGTTCTAATGCTTCCT 57.815 39.130 0.00 0.00 0.00 3.36
2075 2119 8.854614 ATATACAAGATGGTTCTAATGCTTCC 57.145 34.615 0.00 0.00 0.00 3.46
2176 2220 4.940654 TGTTGTTTTCGGATCAGCATATGA 59.059 37.500 6.97 0.00 43.70 2.15
2177 2221 5.233957 TGTTGTTTTCGGATCAGCATATG 57.766 39.130 0.00 0.00 0.00 1.78
2178 2222 5.357878 ACATGTTGTTTTCGGATCAGCATAT 59.642 36.000 0.00 0.00 33.23 1.78
2179 2223 4.699735 ACATGTTGTTTTCGGATCAGCATA 59.300 37.500 0.00 0.00 33.23 3.14
2180 2224 3.507233 ACATGTTGTTTTCGGATCAGCAT 59.493 39.130 0.00 0.00 34.40 3.79
2181 2225 2.884012 ACATGTTGTTTTCGGATCAGCA 59.116 40.909 0.00 0.00 0.00 4.41
2182 2226 3.492313 GACATGTTGTTTTCGGATCAGC 58.508 45.455 0.00 0.00 0.00 4.26
2183 2227 3.501828 TGGACATGTTGTTTTCGGATCAG 59.498 43.478 0.00 0.00 0.00 2.90
2184 2228 3.252215 GTGGACATGTTGTTTTCGGATCA 59.748 43.478 0.00 0.00 0.00 2.92
2185 2229 3.502211 AGTGGACATGTTGTTTTCGGATC 59.498 43.478 0.00 0.00 0.00 3.36
2186 2230 3.486383 AGTGGACATGTTGTTTTCGGAT 58.514 40.909 0.00 0.00 0.00 4.18
2187 2231 2.925724 AGTGGACATGTTGTTTTCGGA 58.074 42.857 0.00 0.00 0.00 4.55
2188 2232 3.628017 GAAGTGGACATGTTGTTTTCGG 58.372 45.455 0.00 0.00 0.00 4.30
2189 2233 3.001838 TCGAAGTGGACATGTTGTTTTCG 59.998 43.478 20.72 20.72 34.63 3.46
2190 2234 4.545823 TCGAAGTGGACATGTTGTTTTC 57.454 40.909 0.00 2.20 0.00 2.29
2191 2235 4.821805 AGATCGAAGTGGACATGTTGTTTT 59.178 37.500 0.00 0.00 0.00 2.43
2192 2236 4.214119 CAGATCGAAGTGGACATGTTGTTT 59.786 41.667 0.00 0.00 0.00 2.83
2193 2237 3.748048 CAGATCGAAGTGGACATGTTGTT 59.252 43.478 0.00 0.00 0.00 2.83
2194 2238 3.006859 TCAGATCGAAGTGGACATGTTGT 59.993 43.478 0.00 0.00 0.00 3.32
2195 2239 3.588955 TCAGATCGAAGTGGACATGTTG 58.411 45.455 0.00 0.00 0.00 3.33
2196 2240 3.961480 TCAGATCGAAGTGGACATGTT 57.039 42.857 0.00 0.00 0.00 2.71
2197 2241 3.961480 TTCAGATCGAAGTGGACATGT 57.039 42.857 0.00 0.00 0.00 3.21
2198 2242 4.498241 TCTTTCAGATCGAAGTGGACATG 58.502 43.478 0.00 0.00 34.32 3.21
2199 2243 4.808414 TCTTTCAGATCGAAGTGGACAT 57.192 40.909 0.00 0.00 34.32 3.06
2200 2244 4.748892 GATCTTTCAGATCGAAGTGGACA 58.251 43.478 0.00 0.00 41.36 4.02
2218 2262 9.781633 CTCCATAGAAAAATTCATCTGAGATCT 57.218 33.333 0.00 0.00 0.00 2.75
2219 2263 9.775854 TCTCCATAGAAAAATTCATCTGAGATC 57.224 33.333 0.00 0.00 0.00 2.75
2221 2265 9.610705 CTTCTCCATAGAAAAATTCATCTGAGA 57.389 33.333 3.80 0.00 41.19 3.27
2222 2266 9.610705 TCTTCTCCATAGAAAAATTCATCTGAG 57.389 33.333 3.80 2.98 41.19 3.35
2223 2267 9.964354 TTCTTCTCCATAGAAAAATTCATCTGA 57.036 29.630 3.80 0.00 41.19 3.27
2239 2283 8.882282 AGAGACATTCATATGATTCTTCTCCAT 58.118 33.333 20.23 9.58 33.00 3.41
2240 2284 8.148999 CAGAGACATTCATATGATTCTTCTCCA 58.851 37.037 20.23 2.69 33.00 3.86
2241 2285 8.366401 TCAGAGACATTCATATGATTCTTCTCC 58.634 37.037 20.23 8.59 33.00 3.71
2242 2286 9.414295 CTCAGAGACATTCATATGATTCTTCTC 57.586 37.037 18.22 18.22 35.65 2.87
2243 2287 9.145442 TCTCAGAGACATTCATATGATTCTTCT 57.855 33.333 6.17 7.03 35.65 2.85
2244 2288 9.932207 ATCTCAGAGACATTCATATGATTCTTC 57.068 33.333 6.17 2.50 35.65 2.87
2249 2293 8.252417 GCACTATCTCAGAGACATTCATATGAT 58.748 37.037 6.17 0.00 35.65 2.45
2250 2294 7.450944 AGCACTATCTCAGAGACATTCATATGA 59.549 37.037 0.91 0.00 35.65 2.15
2251 2295 7.604549 AGCACTATCTCAGAGACATTCATATG 58.395 38.462 0.91 0.00 37.79 1.78
2252 2296 7.779754 AGCACTATCTCAGAGACATTCATAT 57.220 36.000 0.91 0.00 0.00 1.78
2253 2297 7.594351 AAGCACTATCTCAGAGACATTCATA 57.406 36.000 0.91 0.00 0.00 2.15
2254 2298 6.482898 AAGCACTATCTCAGAGACATTCAT 57.517 37.500 0.91 0.00 0.00 2.57
2255 2299 5.929058 AAGCACTATCTCAGAGACATTCA 57.071 39.130 0.91 0.00 0.00 2.57
2256 2300 6.456718 GCAAAAGCACTATCTCAGAGACATTC 60.457 42.308 0.91 0.00 0.00 2.67
2257 2301 5.353678 GCAAAAGCACTATCTCAGAGACATT 59.646 40.000 0.91 0.00 0.00 2.71
2258 2302 4.874966 GCAAAAGCACTATCTCAGAGACAT 59.125 41.667 0.91 0.00 0.00 3.06
2259 2303 4.248859 GCAAAAGCACTATCTCAGAGACA 58.751 43.478 0.91 0.00 0.00 3.41
2260 2304 4.248859 TGCAAAAGCACTATCTCAGAGAC 58.751 43.478 0.91 0.00 0.00 3.36
2261 2305 4.541973 TGCAAAAGCACTATCTCAGAGA 57.458 40.909 1.54 1.54 0.00 3.10
2262 2306 5.814764 ATTGCAAAAGCACTATCTCAGAG 57.185 39.130 1.71 0.00 0.00 3.35
2263 2307 7.011763 GTGATATTGCAAAAGCACTATCTCAGA 59.988 37.037 20.79 5.81 35.09 3.27
2264 2308 7.012138 AGTGATATTGCAAAAGCACTATCTCAG 59.988 37.037 22.11 0.00 35.00 3.35
2265 2309 6.825213 AGTGATATTGCAAAAGCACTATCTCA 59.175 34.615 22.11 7.71 35.00 3.27
2266 2310 7.256756 AGTGATATTGCAAAAGCACTATCTC 57.743 36.000 22.11 18.24 35.00 2.75
2267 2311 6.261826 GGAGTGATATTGCAAAAGCACTATCT 59.738 38.462 22.94 8.81 36.25 1.98
2268 2312 6.038603 TGGAGTGATATTGCAAAAGCACTATC 59.961 38.462 22.94 15.98 36.25 2.08
2269 2313 5.887598 TGGAGTGATATTGCAAAAGCACTAT 59.112 36.000 22.94 8.97 36.25 2.12
2270 2314 5.252547 TGGAGTGATATTGCAAAAGCACTA 58.747 37.500 22.94 11.84 36.25 2.74
2271 2315 4.081406 TGGAGTGATATTGCAAAAGCACT 58.919 39.130 23.04 23.04 37.93 4.40
2272 2316 4.439305 TGGAGTGATATTGCAAAAGCAC 57.561 40.909 16.48 16.48 0.00 4.40
2273 2317 5.010922 AGTTTGGAGTGATATTGCAAAAGCA 59.989 36.000 1.71 0.00 37.56 3.91
2274 2318 5.473039 AGTTTGGAGTGATATTGCAAAAGC 58.527 37.500 1.71 0.00 37.56 3.51
2275 2319 9.643693 AATTAGTTTGGAGTGATATTGCAAAAG 57.356 29.630 1.71 0.00 37.56 2.27
2276 2320 9.995003 AAATTAGTTTGGAGTGATATTGCAAAA 57.005 25.926 1.71 0.00 37.56 2.44
2277 2321 9.995003 AAAATTAGTTTGGAGTGATATTGCAAA 57.005 25.926 1.71 0.00 34.19 3.68
2278 2322 9.995003 AAAAATTAGTTTGGAGTGATATTGCAA 57.005 25.926 0.00 0.00 0.00 4.08
2302 2346 7.313646 TCGTTTGTTCAACTGGACAATAAAAA 58.686 30.769 4.41 0.00 32.53 1.94
2303 2347 6.853720 TCGTTTGTTCAACTGGACAATAAAA 58.146 32.000 4.41 0.00 32.53 1.52
2304 2348 6.094325 ACTCGTTTGTTCAACTGGACAATAAA 59.906 34.615 4.41 0.00 32.53 1.40
2305 2349 5.587043 ACTCGTTTGTTCAACTGGACAATAA 59.413 36.000 4.41 0.00 32.53 1.40
2306 2350 5.120399 ACTCGTTTGTTCAACTGGACAATA 58.880 37.500 4.41 0.00 32.53 1.90
2307 2351 3.945285 ACTCGTTTGTTCAACTGGACAAT 59.055 39.130 4.41 0.00 32.53 2.71
2308 2352 3.340034 ACTCGTTTGTTCAACTGGACAA 58.660 40.909 0.00 0.00 32.53 3.18
2309 2353 2.980568 ACTCGTTTGTTCAACTGGACA 58.019 42.857 0.00 0.00 32.53 4.02
2310 2354 3.936661 GAACTCGTTTGTTCAACTGGAC 58.063 45.455 11.55 0.00 44.00 4.02
2342 2386 7.169140 GTGCCGAATTCTTTATGAACTGTTTTT 59.831 33.333 3.52 0.00 37.52 1.94
2343 2387 6.640907 GTGCCGAATTCTTTATGAACTGTTTT 59.359 34.615 3.52 0.00 37.52 2.43
2344 2388 6.149633 GTGCCGAATTCTTTATGAACTGTTT 58.850 36.000 3.52 0.00 37.52 2.83
2345 2389 5.240623 TGTGCCGAATTCTTTATGAACTGTT 59.759 36.000 3.52 0.00 37.52 3.16
2346 2390 4.759693 TGTGCCGAATTCTTTATGAACTGT 59.240 37.500 3.52 0.00 37.52 3.55
2347 2391 5.295431 TGTGCCGAATTCTTTATGAACTG 57.705 39.130 3.52 0.00 37.52 3.16
2348 2392 5.473504 ACTTGTGCCGAATTCTTTATGAACT 59.526 36.000 3.52 0.00 37.52 3.01
2349 2393 5.699839 ACTTGTGCCGAATTCTTTATGAAC 58.300 37.500 3.52 0.00 37.52 3.18
2350 2394 5.957842 ACTTGTGCCGAATTCTTTATGAA 57.042 34.783 3.52 0.00 39.24 2.57
2351 2395 5.957842 AACTTGTGCCGAATTCTTTATGA 57.042 34.783 3.52 0.00 0.00 2.15
2352 2396 7.432252 GGATTAACTTGTGCCGAATTCTTTATG 59.568 37.037 3.52 0.00 0.00 1.90
2353 2397 7.416326 GGGATTAACTTGTGCCGAATTCTTTAT 60.416 37.037 3.52 0.00 0.00 1.40
2354 2398 6.127842 GGGATTAACTTGTGCCGAATTCTTTA 60.128 38.462 3.52 0.00 0.00 1.85
2355 2399 5.336451 GGGATTAACTTGTGCCGAATTCTTT 60.336 40.000 3.52 0.00 0.00 2.52
2356 2400 4.157840 GGGATTAACTTGTGCCGAATTCTT 59.842 41.667 3.52 0.00 0.00 2.52
2357 2401 3.694566 GGGATTAACTTGTGCCGAATTCT 59.305 43.478 3.52 0.00 0.00 2.40
2358 2402 3.442273 TGGGATTAACTTGTGCCGAATTC 59.558 43.478 0.00 0.00 0.00 2.17
2359 2403 3.426615 TGGGATTAACTTGTGCCGAATT 58.573 40.909 0.00 0.00 0.00 2.17
2360 2404 3.080300 TGGGATTAACTTGTGCCGAAT 57.920 42.857 0.00 0.00 0.00 3.34
2361 2405 2.570415 TGGGATTAACTTGTGCCGAA 57.430 45.000 0.00 0.00 0.00 4.30
2362 2406 2.570415 TTGGGATTAACTTGTGCCGA 57.430 45.000 0.00 0.00 0.00 5.54
2363 2407 3.192422 TCAATTGGGATTAACTTGTGCCG 59.808 43.478 5.42 0.00 0.00 5.69
2364 2408 4.220602 ACTCAATTGGGATTAACTTGTGCC 59.779 41.667 13.56 0.00 0.00 5.01
2365 2409 5.391312 ACTCAATTGGGATTAACTTGTGC 57.609 39.130 13.56 0.00 0.00 4.57
2366 2410 7.390440 TGTCTACTCAATTGGGATTAACTTGTG 59.610 37.037 13.56 0.00 0.00 3.33
2367 2411 7.458397 TGTCTACTCAATTGGGATTAACTTGT 58.542 34.615 13.56 0.00 0.00 3.16
2368 2412 7.921786 TGTCTACTCAATTGGGATTAACTTG 57.078 36.000 13.56 0.00 0.00 3.16
2369 2413 8.328758 TGATGTCTACTCAATTGGGATTAACTT 58.671 33.333 13.56 3.07 0.00 2.66
2370 2414 7.861629 TGATGTCTACTCAATTGGGATTAACT 58.138 34.615 13.56 0.00 0.00 2.24
2371 2415 7.254932 GCTGATGTCTACTCAATTGGGATTAAC 60.255 40.741 13.56 5.25 0.00 2.01
2372 2416 6.767902 GCTGATGTCTACTCAATTGGGATTAA 59.232 38.462 13.56 0.00 0.00 1.40
2373 2417 6.291377 GCTGATGTCTACTCAATTGGGATTA 58.709 40.000 13.56 0.00 0.00 1.75
2374 2418 5.128919 GCTGATGTCTACTCAATTGGGATT 58.871 41.667 13.56 0.00 0.00 3.01
2375 2419 4.445448 GGCTGATGTCTACTCAATTGGGAT 60.445 45.833 13.56 0.00 0.00 3.85
2376 2420 3.118261 GGCTGATGTCTACTCAATTGGGA 60.118 47.826 13.56 0.00 0.00 4.37
2377 2421 3.209410 GGCTGATGTCTACTCAATTGGG 58.791 50.000 3.01 3.01 0.00 4.12
2378 2422 3.209410 GGGCTGATGTCTACTCAATTGG 58.791 50.000 5.42 0.00 0.00 3.16
2379 2423 3.877559 TGGGCTGATGTCTACTCAATTG 58.122 45.455 0.00 0.00 0.00 2.32
2380 2424 4.458397 CATGGGCTGATGTCTACTCAATT 58.542 43.478 0.00 0.00 0.00 2.32
2381 2425 3.746751 GCATGGGCTGATGTCTACTCAAT 60.747 47.826 0.00 0.00 36.96 2.57
2382 2426 2.420547 GCATGGGCTGATGTCTACTCAA 60.421 50.000 0.00 0.00 36.96 3.02
2383 2427 1.139654 GCATGGGCTGATGTCTACTCA 59.860 52.381 0.00 0.00 36.96 3.41
2384 2428 1.876322 GCATGGGCTGATGTCTACTC 58.124 55.000 0.00 0.00 36.96 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.