Multiple sequence alignment - TraesCS3A01G234800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G234800 chr3A 100.000 5227 0 0 1 5227 438598443 438603669 0.000000e+00 9653.0
1 TraesCS3A01G234800 chr3D 96.090 1739 62 4 852 2585 326704663 326702926 0.000000e+00 2830.0
2 TraesCS3A01G234800 chr3D 94.059 1296 57 8 3940 5227 326701407 326700124 0.000000e+00 1949.0
3 TraesCS3A01G234800 chr3D 97.026 807 18 6 2652 3453 326702926 326702121 0.000000e+00 1352.0
4 TraesCS3A01G234800 chr3D 90.105 667 52 6 1 666 326814922 326814269 0.000000e+00 854.0
5 TraesCS3A01G234800 chr3D 94.898 490 20 4 3451 3937 326702040 326701553 0.000000e+00 761.0
6 TraesCS3A01G234800 chr3D 76.826 397 81 6 6 398 449539649 449539260 4.100000e-51 213.0
7 TraesCS3A01G234800 chr3D 96.190 105 3 1 765 868 326704782 326704678 2.500000e-38 171.0
8 TraesCS3A01G234800 chr3D 91.566 83 3 3 666 744 326814286 326814204 1.540000e-20 111.0
9 TraesCS3A01G234800 chr3D 73.475 377 58 23 38 397 559133260 559132909 2.570000e-18 104.0
10 TraesCS3A01G234800 chr3D 100.000 35 0 0 740 774 326711383 326711349 1.210000e-06 65.8
11 TraesCS3A01G234800 chr3B 96.883 1572 37 9 2072 3633 423815081 423813512 0.000000e+00 2621.0
12 TraesCS3A01G234800 chr3B 95.263 1330 44 7 760 2074 423816681 423815356 0.000000e+00 2089.0
13 TraesCS3A01G234800 chr3B 91.581 1271 67 21 3762 5022 423812764 423811524 0.000000e+00 1718.0
14 TraesCS3A01G234800 chr3B 96.226 159 5 1 3632 3789 423813277 423813119 5.190000e-65 259.0
15 TraesCS3A01G234800 chr3B 77.644 331 63 9 6 332 719911309 719910986 1.920000e-44 191.0
16 TraesCS3A01G234800 chr3B 93.043 115 4 4 5083 5197 423811524 423811414 1.160000e-36 165.0
17 TraesCS3A01G234800 chr3B 74.479 192 42 7 6 192 492101697 492101886 5.610000e-10 76.8
18 TraesCS3A01G234800 chr3B 100.000 33 0 0 5195 5227 423811354 423811322 1.570000e-05 62.1
19 TraesCS3A01G234800 chr1A 79.960 504 84 12 996 1489 573064883 573064387 6.440000e-94 355.0
20 TraesCS3A01G234800 chr1A 86.335 161 22 0 2205 2365 573063178 573063018 5.380000e-40 176.0
21 TraesCS3A01G234800 chr1D 79.843 511 78 16 1000 1489 476909130 476908624 3.000000e-92 350.0
22 TraesCS3A01G234800 chr1D 86.335 161 22 0 2205 2365 476907466 476907306 5.380000e-40 176.0
23 TraesCS3A01G234800 chr1D 89.076 119 13 0 3248 3366 476905911 476905793 1.170000e-31 148.0
24 TraesCS3A01G234800 chr1B 78.937 527 73 20 1000 1489 664297335 664297860 1.820000e-84 324.0
25 TraesCS3A01G234800 chr1B 75.050 505 112 13 6 503 357452693 357452196 6.810000e-54 222.0
26 TraesCS3A01G234800 chr1B 87.097 155 20 0 2205 2359 664299221 664299375 5.380000e-40 176.0
27 TraesCS3A01G234800 chr1B 88.525 122 14 0 3245 3366 664300758 664300879 1.170000e-31 148.0
28 TraesCS3A01G234800 chr1B 88.000 75 5 3 274 345 194641479 194641552 9.330000e-13 86.1
29 TraesCS3A01G234800 chr7A 76.724 464 82 10 6 463 448111530 448111973 8.750000e-58 235.0
30 TraesCS3A01G234800 chr5B 80.645 310 53 5 6 311 65955780 65956086 3.150000e-57 233.0
31 TraesCS3A01G234800 chr2B 81.176 170 24 7 240 403 409665865 409665698 4.250000e-26 130.0
32 TraesCS3A01G234800 chr5D 76.699 206 42 5 17 218 8448443 8448240 5.530000e-20 110.0
33 TraesCS3A01G234800 chr5D 81.609 87 12 2 129 213 311090663 311090747 9.390000e-08 69.4
34 TraesCS3A01G234800 chr7B 85.882 85 5 5 271 352 143394370 143394290 3.350000e-12 84.2
35 TraesCS3A01G234800 chr6D 87.671 73 5 2 276 345 45779643 45779714 1.210000e-11 82.4
36 TraesCS3A01G234800 chr4D 87.671 73 5 2 276 345 355075895 355075966 1.210000e-11 82.4
37 TraesCS3A01G234800 chr4B 87.671 73 5 2 276 345 612400988 612401059 1.210000e-11 82.4
38 TraesCS3A01G234800 chr5A 83.333 84 10 2 133 214 180083287 180083368 2.020000e-09 75.0
39 TraesCS3A01G234800 chr5A 77.778 135 21 7 363 495 592517218 592517091 2.020000e-09 75.0
40 TraesCS3A01G234800 chr5A 100.000 28 0 0 743 770 373889786 373889759 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G234800 chr3A 438598443 438603669 5226 False 9653.000000 9653 100.000000 1 5227 1 chr3A.!!$F1 5226
1 TraesCS3A01G234800 chr3D 326700124 326704782 4658 True 1412.600000 2830 95.652600 765 5227 5 chr3D.!!$R4 4462
2 TraesCS3A01G234800 chr3D 326814204 326814922 718 True 482.500000 854 90.835500 1 744 2 chr3D.!!$R5 743
3 TraesCS3A01G234800 chr3B 423811322 423816681 5359 True 1152.350000 2621 95.499333 760 5227 6 chr3B.!!$R2 4467
4 TraesCS3A01G234800 chr1A 573063018 573064883 1865 True 265.500000 355 83.147500 996 2365 2 chr1A.!!$R1 1369
5 TraesCS3A01G234800 chr1D 476905793 476909130 3337 True 224.666667 350 85.084667 1000 3366 3 chr1D.!!$R1 2366
6 TraesCS3A01G234800 chr1B 664297335 664300879 3544 False 216.000000 324 84.853000 1000 3366 3 chr1B.!!$F2 2366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 709 0.030638 ACAAGGTTCATTGCACACGC 59.969 50.000 0.00 0.0 39.24 5.34 F
979 1012 0.031314 CCATCGACCCAGATCTCACG 59.969 60.000 0.00 0.0 0.00 4.35 F
1330 1403 0.331278 TGAAGGGTTTCATGGCGGAT 59.669 50.000 0.00 0.0 38.37 4.18 F
1870 2230 2.672961 TGTTACTCTGGATTGCCTCG 57.327 50.000 0.00 0.0 34.31 4.63 F
3588 5891 1.073284 GTTTCCTGACTGGCTGGGTTA 59.927 52.381 6.59 0.0 36.34 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1524 1597 0.387239 GCCAGAACAATCAACCACGC 60.387 55.000 0.00 0.00 0.00 5.34 R
2669 4224 1.399440 CTCAGCGTGATTTCACCATGG 59.601 52.381 11.19 11.19 43.66 3.66 R
2683 4238 9.665264 AGAAAAACTTAATTTCTTTACTCAGCG 57.335 29.630 0.00 0.00 42.85 5.18 R
3792 6714 2.689471 AGCAAGTTGATCAGTGTGCAAA 59.311 40.909 21.47 0.00 34.44 3.68 R
5147 8237 0.322906 GAGGGCTTTGGGTGAAGAGG 60.323 60.000 0.00 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 1.067821 GTGTGGTTCGATTTTTGCCCA 59.932 47.619 0.00 0.00 0.00 5.36
108 109 2.170607 ACCTGGCATCGTTTATACAGCT 59.829 45.455 0.00 0.00 0.00 4.24
128 129 2.112297 TGGACACCCGAAGCCAAC 59.888 61.111 0.00 0.00 34.29 3.77
129 130 2.671963 GGACACCCGAAGCCAACC 60.672 66.667 0.00 0.00 0.00 3.77
132 133 2.046314 CACCCGAAGCCAACCGAT 60.046 61.111 0.00 0.00 0.00 4.18
133 134 2.046314 ACCCGAAGCCAACCGATG 60.046 61.111 0.00 0.00 0.00 3.84
134 135 2.046314 CCCGAAGCCAACCGATGT 60.046 61.111 0.00 0.00 0.00 3.06
135 136 1.674322 CCCGAAGCCAACCGATGTT 60.674 57.895 0.00 0.00 34.14 2.71
148 149 4.398549 ACCGATGTTGTGTTTAATGACG 57.601 40.909 0.00 0.00 0.00 4.35
149 150 3.810941 ACCGATGTTGTGTTTAATGACGT 59.189 39.130 0.00 0.00 0.00 4.34
150 151 4.148166 CCGATGTTGTGTTTAATGACGTG 58.852 43.478 0.00 0.00 0.00 4.49
151 152 3.597825 CGATGTTGTGTTTAATGACGTGC 59.402 43.478 0.00 0.00 0.00 5.34
152 153 2.975446 TGTTGTGTTTAATGACGTGCG 58.025 42.857 0.00 0.00 0.00 5.34
153 154 2.286477 TGTTGTGTTTAATGACGTGCGG 60.286 45.455 0.00 0.00 0.00 5.69
154 155 0.236187 TGTGTTTAATGACGTGCGGC 59.764 50.000 0.00 0.00 0.00 6.53
155 156 0.515564 GTGTTTAATGACGTGCGGCT 59.484 50.000 0.00 0.00 0.00 5.52
156 157 0.793861 TGTTTAATGACGTGCGGCTC 59.206 50.000 0.00 0.00 0.00 4.70
157 158 0.247145 GTTTAATGACGTGCGGCTCG 60.247 55.000 21.23 21.23 0.00 5.03
173 174 4.696172 CGCGAACGAACGTGTGGC 62.696 66.667 0.00 4.34 43.93 5.01
174 175 4.364409 GCGAACGAACGTGTGGCC 62.364 66.667 0.00 0.00 35.59 5.36
175 176 4.054455 CGAACGAACGTGTGGCCG 62.054 66.667 0.00 0.00 0.00 6.13
176 177 3.708734 GAACGAACGTGTGGCCGG 61.709 66.667 0.00 0.00 0.00 6.13
177 178 4.224274 AACGAACGTGTGGCCGGA 62.224 61.111 5.05 0.00 0.00 5.14
178 179 4.657824 ACGAACGTGTGGCCGGAG 62.658 66.667 5.05 0.00 0.00 4.63
179 180 4.657824 CGAACGTGTGGCCGGAGT 62.658 66.667 5.05 0.00 0.00 3.85
180 181 2.652530 GAACGTGTGGCCGGAGTA 59.347 61.111 5.05 0.00 0.00 2.59
181 182 1.445582 GAACGTGTGGCCGGAGTAG 60.446 63.158 5.05 0.00 0.00 2.57
182 183 2.830704 GAACGTGTGGCCGGAGTAGG 62.831 65.000 5.05 0.00 0.00 3.18
183 184 3.379445 CGTGTGGCCGGAGTAGGT 61.379 66.667 5.05 0.00 0.00 3.08
184 185 2.939261 CGTGTGGCCGGAGTAGGTT 61.939 63.158 5.05 0.00 0.00 3.50
185 186 1.373812 GTGTGGCCGGAGTAGGTTT 59.626 57.895 5.05 0.00 0.00 3.27
186 187 0.672711 GTGTGGCCGGAGTAGGTTTC 60.673 60.000 5.05 0.00 0.00 2.78
187 188 0.834687 TGTGGCCGGAGTAGGTTTCT 60.835 55.000 5.05 0.00 0.00 2.52
188 189 0.108281 GTGGCCGGAGTAGGTTTCTC 60.108 60.000 5.05 0.00 0.00 2.87
189 190 1.141234 GGCCGGAGTAGGTTTCTCG 59.859 63.158 5.05 0.00 33.26 4.04
190 191 1.141234 GCCGGAGTAGGTTTCTCGG 59.859 63.158 5.05 0.00 33.26 4.63
191 192 1.141234 CCGGAGTAGGTTTCTCGGC 59.859 63.158 0.00 0.00 33.11 5.54
192 193 1.226603 CGGAGTAGGTTTCTCGGCG 60.227 63.158 0.00 0.00 33.26 6.46
193 194 1.518792 GGAGTAGGTTTCTCGGCGC 60.519 63.158 0.00 0.00 33.26 6.53
194 195 1.214589 GAGTAGGTTTCTCGGCGCA 59.785 57.895 10.83 0.00 0.00 6.09
195 196 0.179108 GAGTAGGTTTCTCGGCGCAT 60.179 55.000 10.83 0.00 0.00 4.73
196 197 0.460284 AGTAGGTTTCTCGGCGCATG 60.460 55.000 10.83 0.00 0.00 4.06
197 198 1.813753 TAGGTTTCTCGGCGCATGC 60.814 57.895 10.83 7.91 41.71 4.06
198 199 2.514510 TAGGTTTCTCGGCGCATGCA 62.515 55.000 19.57 0.00 45.35 3.96
199 200 2.202349 GTTTCTCGGCGCATGCAC 60.202 61.111 19.57 8.05 45.35 4.57
200 201 2.667874 TTTCTCGGCGCATGCACA 60.668 55.556 19.57 0.00 45.35 4.57
201 202 2.257302 TTTCTCGGCGCATGCACAA 61.257 52.632 19.57 0.00 45.35 3.33
202 203 2.186350 TTTCTCGGCGCATGCACAAG 62.186 55.000 19.57 9.58 45.35 3.16
203 204 3.425713 CTCGGCGCATGCACAAGT 61.426 61.111 19.57 0.00 45.35 3.16
204 205 2.969806 CTCGGCGCATGCACAAGTT 61.970 57.895 19.57 0.00 45.35 2.66
205 206 2.050168 CGGCGCATGCACAAGTTT 60.050 55.556 19.57 0.00 45.35 2.66
206 207 1.208870 CGGCGCATGCACAAGTTTA 59.791 52.632 19.57 0.00 45.35 2.01
207 208 0.386605 CGGCGCATGCACAAGTTTAA 60.387 50.000 19.57 0.00 45.35 1.52
208 209 1.732077 CGGCGCATGCACAAGTTTAAT 60.732 47.619 19.57 0.00 45.35 1.40
209 210 1.655099 GGCGCATGCACAAGTTTAATG 59.345 47.619 19.57 0.00 45.35 1.90
210 211 1.655099 GCGCATGCACAAGTTTAATGG 59.345 47.619 19.57 0.00 42.15 3.16
211 212 2.670789 GCGCATGCACAAGTTTAATGGA 60.671 45.455 19.57 0.00 42.15 3.41
212 213 3.173599 CGCATGCACAAGTTTAATGGAG 58.826 45.455 19.57 0.00 0.00 3.86
213 214 3.119884 CGCATGCACAAGTTTAATGGAGA 60.120 43.478 19.57 0.00 0.00 3.71
214 215 4.615682 CGCATGCACAAGTTTAATGGAGAA 60.616 41.667 19.57 0.00 0.00 2.87
215 216 5.229423 GCATGCACAAGTTTAATGGAGAAA 58.771 37.500 14.21 0.00 0.00 2.52
216 217 5.346822 GCATGCACAAGTTTAATGGAGAAAG 59.653 40.000 14.21 0.00 0.00 2.62
217 218 5.452078 TGCACAAGTTTAATGGAGAAAGG 57.548 39.130 0.00 0.00 0.00 3.11
218 219 4.237724 GCACAAGTTTAATGGAGAAAGGC 58.762 43.478 0.00 0.00 0.00 4.35
219 220 4.475944 CACAAGTTTAATGGAGAAAGGCG 58.524 43.478 0.00 0.00 0.00 5.52
220 221 3.506067 ACAAGTTTAATGGAGAAAGGCGG 59.494 43.478 0.00 0.00 0.00 6.13
221 222 2.723273 AGTTTAATGGAGAAAGGCGGG 58.277 47.619 0.00 0.00 0.00 6.13
222 223 1.134367 GTTTAATGGAGAAAGGCGGGC 59.866 52.381 0.00 0.00 0.00 6.13
223 224 0.329931 TTAATGGAGAAAGGCGGGCA 59.670 50.000 3.78 0.00 0.00 5.36
224 225 0.550914 TAATGGAGAAAGGCGGGCAT 59.449 50.000 3.78 0.00 0.00 4.40
225 226 0.550914 AATGGAGAAAGGCGGGCATA 59.449 50.000 3.78 0.00 0.00 3.14
226 227 0.179018 ATGGAGAAAGGCGGGCATAC 60.179 55.000 3.78 0.00 0.00 2.39
227 228 1.271840 TGGAGAAAGGCGGGCATACT 61.272 55.000 3.78 0.00 0.00 2.12
228 229 0.815615 GGAGAAAGGCGGGCATACTG 60.816 60.000 3.78 0.00 0.00 2.74
229 230 0.107654 GAGAAAGGCGGGCATACTGT 60.108 55.000 3.78 0.00 0.00 3.55
230 231 1.138266 GAGAAAGGCGGGCATACTGTA 59.862 52.381 3.78 0.00 0.00 2.74
231 232 1.139058 AGAAAGGCGGGCATACTGTAG 59.861 52.381 3.78 0.00 0.00 2.74
232 233 0.463833 AAAGGCGGGCATACTGTAGC 60.464 55.000 3.78 0.00 0.00 3.58
242 243 4.844267 GGCATACTGTAGCCGTTTAAATG 58.156 43.478 10.92 0.04 41.70 2.32
243 244 4.279659 GCATACTGTAGCCGTTTAAATGC 58.720 43.478 1.60 3.46 0.00 3.56
244 245 4.514506 CATACTGTAGCCGTTTAAATGCG 58.485 43.478 1.60 0.00 0.00 4.73
252 253 3.051606 CCGTTTAAATGCGGTGATGAG 57.948 47.619 8.66 0.00 42.73 2.90
253 254 2.223249 CCGTTTAAATGCGGTGATGAGG 60.223 50.000 8.66 0.00 42.73 3.86
254 255 2.791158 CGTTTAAATGCGGTGATGAGGC 60.791 50.000 0.00 0.00 0.00 4.70
255 256 2.121291 TTAAATGCGGTGATGAGGCA 57.879 45.000 0.00 0.00 41.48 4.75
257 258 0.742505 AAATGCGGTGATGAGGCATG 59.257 50.000 0.00 0.00 45.96 4.06
258 259 0.394762 AATGCGGTGATGAGGCATGT 60.395 50.000 0.00 0.00 45.96 3.21
259 260 0.816825 ATGCGGTGATGAGGCATGTC 60.817 55.000 0.00 0.00 45.04 3.06
260 261 1.450134 GCGGTGATGAGGCATGTCA 60.450 57.895 0.00 0.00 0.00 3.58
261 262 1.434622 GCGGTGATGAGGCATGTCAG 61.435 60.000 0.00 0.00 0.00 3.51
262 263 1.434622 CGGTGATGAGGCATGTCAGC 61.435 60.000 0.00 1.02 37.10 4.26
313 314 2.202388 CGCACCGCTTCAATGCTG 60.202 61.111 0.00 0.00 37.20 4.41
314 315 2.180017 GCACCGCTTCAATGCTGG 59.820 61.111 0.00 0.00 36.40 4.85
315 316 2.629656 GCACCGCTTCAATGCTGGT 61.630 57.895 0.00 0.00 39.21 4.00
316 317 1.305219 GCACCGCTTCAATGCTGGTA 61.305 55.000 0.00 0.00 37.60 3.25
317 318 0.729116 CACCGCTTCAATGCTGGTAG 59.271 55.000 0.00 0.00 37.60 3.18
318 319 0.324943 ACCGCTTCAATGCTGGTAGT 59.675 50.000 0.00 0.00 37.79 2.73
319 320 0.729116 CCGCTTCAATGCTGGTAGTG 59.271 55.000 0.00 0.00 0.00 2.74
320 321 1.675714 CCGCTTCAATGCTGGTAGTGA 60.676 52.381 0.00 0.00 0.00 3.41
321 322 1.662629 CGCTTCAATGCTGGTAGTGAG 59.337 52.381 0.00 0.00 0.00 3.51
322 323 2.675032 CGCTTCAATGCTGGTAGTGAGA 60.675 50.000 0.00 0.00 0.00 3.27
323 324 3.338249 GCTTCAATGCTGGTAGTGAGAA 58.662 45.455 0.00 0.00 0.00 2.87
324 325 3.373439 GCTTCAATGCTGGTAGTGAGAAG 59.627 47.826 0.00 0.00 35.55 2.85
325 326 4.573900 CTTCAATGCTGGTAGTGAGAAGT 58.426 43.478 0.00 0.00 0.00 3.01
326 327 4.623932 TCAATGCTGGTAGTGAGAAGTT 57.376 40.909 0.00 0.00 0.00 2.66
327 328 4.318332 TCAATGCTGGTAGTGAGAAGTTG 58.682 43.478 0.00 0.00 0.00 3.16
328 329 4.067896 CAATGCTGGTAGTGAGAAGTTGT 58.932 43.478 0.00 0.00 0.00 3.32
329 330 3.111853 TGCTGGTAGTGAGAAGTTGTG 57.888 47.619 0.00 0.00 0.00 3.33
330 331 2.434336 TGCTGGTAGTGAGAAGTTGTGT 59.566 45.455 0.00 0.00 0.00 3.72
331 332 3.060602 GCTGGTAGTGAGAAGTTGTGTC 58.939 50.000 0.00 0.00 0.00 3.67
332 333 3.654414 CTGGTAGTGAGAAGTTGTGTCC 58.346 50.000 0.00 0.00 0.00 4.02
333 334 2.035449 TGGTAGTGAGAAGTTGTGTCCG 59.965 50.000 0.00 0.00 0.00 4.79
334 335 2.059541 GTAGTGAGAAGTTGTGTCCGC 58.940 52.381 0.00 0.00 0.00 5.54
335 336 0.753262 AGTGAGAAGTTGTGTCCGCT 59.247 50.000 0.00 0.00 0.00 5.52
336 337 1.140816 GTGAGAAGTTGTGTCCGCTC 58.859 55.000 0.00 0.00 0.00 5.03
337 338 1.040646 TGAGAAGTTGTGTCCGCTCT 58.959 50.000 0.00 0.00 0.00 4.09
338 339 2.030185 GTGAGAAGTTGTGTCCGCTCTA 60.030 50.000 0.00 0.00 0.00 2.43
339 340 2.229062 TGAGAAGTTGTGTCCGCTCTAG 59.771 50.000 0.00 0.00 0.00 2.43
340 341 1.546476 AGAAGTTGTGTCCGCTCTAGG 59.454 52.381 0.00 0.00 0.00 3.02
341 342 0.037232 AAGTTGTGTCCGCTCTAGGC 60.037 55.000 0.00 0.00 37.64 3.93
342 343 1.448013 GTTGTGTCCGCTCTAGGCC 60.448 63.158 0.00 0.00 37.74 5.19
343 344 3.001902 TTGTGTCCGCTCTAGGCCG 62.002 63.158 0.00 0.00 37.74 6.13
344 345 4.208686 GTGTCCGCTCTAGGCCGG 62.209 72.222 13.64 13.64 37.74 6.13
373 374 2.177531 GCGACCGCTCTACAACGA 59.822 61.111 7.19 0.00 38.26 3.85
374 375 2.150837 GCGACCGCTCTACAACGAC 61.151 63.158 7.19 0.00 38.26 4.34
375 376 1.208358 CGACCGCTCTACAACGACA 59.792 57.895 0.00 0.00 0.00 4.35
376 377 0.179171 CGACCGCTCTACAACGACAT 60.179 55.000 0.00 0.00 0.00 3.06
377 378 1.269166 GACCGCTCTACAACGACATG 58.731 55.000 0.00 0.00 0.00 3.21
378 379 0.885879 ACCGCTCTACAACGACATGA 59.114 50.000 0.00 0.00 0.00 3.07
379 380 1.271379 ACCGCTCTACAACGACATGAA 59.729 47.619 0.00 0.00 0.00 2.57
380 381 2.094182 ACCGCTCTACAACGACATGAAT 60.094 45.455 0.00 0.00 0.00 2.57
381 382 2.282555 CCGCTCTACAACGACATGAATG 59.717 50.000 0.00 0.00 0.00 2.67
382 383 2.923655 CGCTCTACAACGACATGAATGT 59.076 45.455 0.00 0.00 45.16 2.71
383 384 3.241773 CGCTCTACAACGACATGAATGTG 60.242 47.826 0.00 0.00 41.95 3.21
384 385 3.062639 GCTCTACAACGACATGAATGTGG 59.937 47.826 0.00 2.14 41.95 4.17
385 386 4.494484 CTCTACAACGACATGAATGTGGA 58.506 43.478 11.76 5.41 41.95 4.02
386 387 4.242475 TCTACAACGACATGAATGTGGAC 58.758 43.478 11.76 0.00 41.95 4.02
387 388 2.844946 ACAACGACATGAATGTGGACA 58.155 42.857 11.76 0.00 41.95 4.02
388 389 2.807967 ACAACGACATGAATGTGGACAG 59.192 45.455 11.76 4.42 41.95 3.51
389 390 1.442769 ACGACATGAATGTGGACAGC 58.557 50.000 11.76 0.00 41.95 4.40
390 391 1.002430 ACGACATGAATGTGGACAGCT 59.998 47.619 11.76 0.00 41.95 4.24
391 392 1.395954 CGACATGAATGTGGACAGCTG 59.604 52.381 13.48 13.48 41.95 4.24
392 393 1.741706 GACATGAATGTGGACAGCTGG 59.258 52.381 19.93 0.00 41.95 4.85
393 394 0.454600 CATGAATGTGGACAGCTGGC 59.545 55.000 19.93 16.59 0.00 4.85
394 395 1.028330 ATGAATGTGGACAGCTGGCG 61.028 55.000 19.93 0.00 0.00 5.69
395 396 3.044059 GAATGTGGACAGCTGGCGC 62.044 63.158 19.93 12.26 0.00 6.53
416 417 4.389576 GCAGAAAGCACGTGGGCG 62.390 66.667 18.88 0.00 44.79 6.13
426 427 4.420143 CGTGGGCGTGGATAGAAG 57.580 61.111 0.00 0.00 0.00 2.85
427 428 1.227263 CGTGGGCGTGGATAGAAGG 60.227 63.158 0.00 0.00 0.00 3.46
428 429 1.905512 GTGGGCGTGGATAGAAGGT 59.094 57.895 0.00 0.00 0.00 3.50
429 430 0.252197 GTGGGCGTGGATAGAAGGTT 59.748 55.000 0.00 0.00 0.00 3.50
430 431 0.988832 TGGGCGTGGATAGAAGGTTT 59.011 50.000 0.00 0.00 0.00 3.27
431 432 2.093341 GTGGGCGTGGATAGAAGGTTTA 60.093 50.000 0.00 0.00 0.00 2.01
432 433 2.775384 TGGGCGTGGATAGAAGGTTTAT 59.225 45.455 0.00 0.00 0.00 1.40
433 434 3.139077 GGGCGTGGATAGAAGGTTTATG 58.861 50.000 0.00 0.00 0.00 1.90
434 435 3.139077 GGCGTGGATAGAAGGTTTATGG 58.861 50.000 0.00 0.00 0.00 2.74
435 436 3.433173 GGCGTGGATAGAAGGTTTATGGT 60.433 47.826 0.00 0.00 0.00 3.55
436 437 4.202284 GGCGTGGATAGAAGGTTTATGGTA 60.202 45.833 0.00 0.00 0.00 3.25
437 438 4.989168 GCGTGGATAGAAGGTTTATGGTAG 59.011 45.833 0.00 0.00 0.00 3.18
438 439 5.539048 CGTGGATAGAAGGTTTATGGTAGG 58.461 45.833 0.00 0.00 0.00 3.18
439 440 5.306394 GTGGATAGAAGGTTTATGGTAGGC 58.694 45.833 0.00 0.00 0.00 3.93
440 441 4.349930 TGGATAGAAGGTTTATGGTAGGCC 59.650 45.833 0.00 0.00 0.00 5.19
449 450 4.800764 TGGTAGGCCAGGGTAGTC 57.199 61.111 5.01 0.00 40.46 2.59
450 451 1.785067 TGGTAGGCCAGGGTAGTCA 59.215 57.895 5.01 0.00 40.46 3.41
451 452 0.325296 TGGTAGGCCAGGGTAGTCAG 60.325 60.000 5.01 0.00 40.46 3.51
452 453 0.325390 GGTAGGCCAGGGTAGTCAGT 60.325 60.000 5.01 0.00 34.09 3.41
453 454 1.063417 GGTAGGCCAGGGTAGTCAGTA 60.063 57.143 5.01 0.00 34.09 2.74
454 455 2.308690 GTAGGCCAGGGTAGTCAGTAG 58.691 57.143 5.01 0.00 0.00 2.57
455 456 0.688087 AGGCCAGGGTAGTCAGTAGC 60.688 60.000 5.01 0.00 0.00 3.58
456 457 1.437986 GCCAGGGTAGTCAGTAGCG 59.562 63.158 0.00 0.00 0.00 4.26
457 458 2.017559 GCCAGGGTAGTCAGTAGCGG 62.018 65.000 0.00 0.00 0.00 5.52
458 459 1.392710 CCAGGGTAGTCAGTAGCGGG 61.393 65.000 0.00 0.00 0.00 6.13
459 460 0.683504 CAGGGTAGTCAGTAGCGGGT 60.684 60.000 0.00 0.00 0.00 5.28
460 461 0.683504 AGGGTAGTCAGTAGCGGGTG 60.684 60.000 0.00 0.00 0.00 4.61
461 462 0.969409 GGGTAGTCAGTAGCGGGTGT 60.969 60.000 0.00 0.00 0.00 4.16
462 463 0.172803 GGTAGTCAGTAGCGGGTGTG 59.827 60.000 0.00 0.00 0.00 3.82
463 464 1.171308 GTAGTCAGTAGCGGGTGTGA 58.829 55.000 0.00 0.00 0.00 3.58
464 465 1.135460 GTAGTCAGTAGCGGGTGTGAC 60.135 57.143 13.56 13.56 39.74 3.67
465 466 0.826256 AGTCAGTAGCGGGTGTGACA 60.826 55.000 19.96 0.00 41.52 3.58
466 467 0.246635 GTCAGTAGCGGGTGTGACAT 59.753 55.000 15.51 0.00 39.33 3.06
467 468 0.530744 TCAGTAGCGGGTGTGACATC 59.469 55.000 0.00 0.00 0.00 3.06
468 469 0.802222 CAGTAGCGGGTGTGACATCG 60.802 60.000 6.87 6.87 0.00 3.84
469 470 0.963856 AGTAGCGGGTGTGACATCGA 60.964 55.000 13.72 0.00 0.00 3.59
470 471 0.102481 GTAGCGGGTGTGACATCGAT 59.898 55.000 13.72 10.45 0.00 3.59
471 472 0.384309 TAGCGGGTGTGACATCGATC 59.616 55.000 13.72 0.00 0.00 3.69
472 473 1.141881 GCGGGTGTGACATCGATCT 59.858 57.895 13.72 0.00 0.00 2.75
473 474 1.148157 GCGGGTGTGACATCGATCTG 61.148 60.000 13.72 0.00 0.00 2.90
474 475 0.455815 CGGGTGTGACATCGATCTGA 59.544 55.000 0.00 0.00 0.00 3.27
475 476 1.135112 CGGGTGTGACATCGATCTGAA 60.135 52.381 0.00 0.00 0.00 3.02
476 477 2.271800 GGGTGTGACATCGATCTGAAC 58.728 52.381 0.00 0.00 0.00 3.18
477 478 1.920574 GGTGTGACATCGATCTGAACG 59.079 52.381 0.00 0.44 0.00 3.95
478 479 1.321743 GTGTGACATCGATCTGAACGC 59.678 52.381 0.00 0.00 0.00 4.84
479 480 0.924090 GTGACATCGATCTGAACGCC 59.076 55.000 0.00 0.00 0.00 5.68
480 481 0.179111 TGACATCGATCTGAACGCCC 60.179 55.000 0.00 0.00 0.00 6.13
481 482 1.209275 GACATCGATCTGAACGCCCG 61.209 60.000 0.00 0.00 0.00 6.13
482 483 2.279517 ATCGATCTGAACGCCCGC 60.280 61.111 2.15 0.00 0.00 6.13
483 484 3.076258 ATCGATCTGAACGCCCGCA 62.076 57.895 2.15 0.00 0.00 5.69
484 485 2.572095 ATCGATCTGAACGCCCGCAA 62.572 55.000 2.15 0.00 0.00 4.85
485 486 2.387445 CGATCTGAACGCCCGCAAA 61.387 57.895 0.00 0.00 0.00 3.68
486 487 1.873165 GATCTGAACGCCCGCAAAA 59.127 52.632 0.00 0.00 0.00 2.44
487 488 0.454452 GATCTGAACGCCCGCAAAAC 60.454 55.000 0.00 0.00 0.00 2.43
488 489 1.862602 ATCTGAACGCCCGCAAAACC 61.863 55.000 0.00 0.00 0.00 3.27
489 490 3.551887 CTGAACGCCCGCAAAACCC 62.552 63.158 0.00 0.00 0.00 4.11
490 491 4.351938 GAACGCCCGCAAAACCCC 62.352 66.667 0.00 0.00 0.00 4.95
505 506 3.759750 CCCCCACCATGTCTCCAT 58.240 61.111 0.00 0.00 0.00 3.41
506 507 2.010067 CCCCCACCATGTCTCCATT 58.990 57.895 0.00 0.00 0.00 3.16
507 508 0.106519 CCCCCACCATGTCTCCATTC 60.107 60.000 0.00 0.00 0.00 2.67
508 509 0.921896 CCCCACCATGTCTCCATTCT 59.078 55.000 0.00 0.00 0.00 2.40
509 510 1.409241 CCCCACCATGTCTCCATTCTG 60.409 57.143 0.00 0.00 0.00 3.02
510 511 1.283029 CCCACCATGTCTCCATTCTGT 59.717 52.381 0.00 0.00 0.00 3.41
511 512 2.362736 CCACCATGTCTCCATTCTGTG 58.637 52.381 0.00 0.00 0.00 3.66
533 534 3.721851 AAAAACACGTCCGGACCG 58.278 55.556 28.52 23.77 0.00 4.79
543 544 4.436998 CCGGACCGGTCTGCTGAC 62.437 72.222 34.08 16.10 42.73 3.51
544 545 3.374402 CGGACCGGTCTGCTGACT 61.374 66.667 32.52 3.82 42.54 3.41
545 546 2.262915 GGACCGGTCTGCTGACTG 59.737 66.667 32.52 22.09 46.36 3.51
549 550 2.740055 CGGTCTGCTGACTGGTGC 60.740 66.667 21.49 5.89 43.85 5.01
550 551 2.427320 GGTCTGCTGACTGGTGCA 59.573 61.111 21.27 0.00 42.54 4.57
554 555 3.487211 TGCTGACTGGTGCAGGAT 58.513 55.556 0.00 0.00 35.51 3.24
555 556 1.297689 TGCTGACTGGTGCAGGATC 59.702 57.895 0.00 0.00 35.51 3.36
556 557 1.812922 GCTGACTGGTGCAGGATCG 60.813 63.158 0.00 0.00 35.51 3.69
557 558 1.593787 CTGACTGGTGCAGGATCGT 59.406 57.895 0.00 0.00 35.51 3.73
558 559 0.036952 CTGACTGGTGCAGGATCGTT 60.037 55.000 0.00 0.00 35.51 3.85
559 560 1.204704 CTGACTGGTGCAGGATCGTTA 59.795 52.381 0.00 0.00 35.51 3.18
560 561 1.621317 TGACTGGTGCAGGATCGTTAA 59.379 47.619 0.00 0.00 35.51 2.01
561 562 2.037902 TGACTGGTGCAGGATCGTTAAA 59.962 45.455 0.00 0.00 35.51 1.52
562 563 3.270877 GACTGGTGCAGGATCGTTAAAT 58.729 45.455 0.00 0.00 35.51 1.40
563 564 3.009723 ACTGGTGCAGGATCGTTAAATG 58.990 45.455 0.00 0.00 35.51 2.32
564 565 2.355756 CTGGTGCAGGATCGTTAAATGG 59.644 50.000 0.00 0.00 0.00 3.16
565 566 1.065551 GGTGCAGGATCGTTAAATGGC 59.934 52.381 0.00 0.00 0.00 4.40
566 567 1.742831 GTGCAGGATCGTTAAATGGCA 59.257 47.619 0.00 0.00 0.00 4.92
567 568 2.163412 GTGCAGGATCGTTAAATGGCAA 59.837 45.455 0.00 0.00 0.00 4.52
568 569 2.822561 TGCAGGATCGTTAAATGGCAAA 59.177 40.909 0.00 0.00 0.00 3.68
569 570 3.256879 TGCAGGATCGTTAAATGGCAAAA 59.743 39.130 0.00 0.00 0.00 2.44
570 571 3.859386 GCAGGATCGTTAAATGGCAAAAG 59.141 43.478 0.00 0.00 0.00 2.27
571 572 4.423732 CAGGATCGTTAAATGGCAAAAGG 58.576 43.478 0.00 0.00 0.00 3.11
572 573 3.119137 AGGATCGTTAAATGGCAAAAGGC 60.119 43.478 0.00 0.00 43.74 4.35
573 574 2.339728 TCGTTAAATGGCAAAAGGCG 57.660 45.000 0.00 0.00 46.16 5.52
574 575 1.609555 TCGTTAAATGGCAAAAGGCGT 59.390 42.857 0.00 0.00 46.16 5.68
575 576 1.982913 CGTTAAATGGCAAAAGGCGTC 59.017 47.619 0.00 0.00 46.16 5.19
576 577 2.333926 GTTAAATGGCAAAAGGCGTCC 58.666 47.619 0.00 0.00 46.16 4.79
577 578 0.523966 TAAATGGCAAAAGGCGTCCG 59.476 50.000 0.00 0.00 46.16 4.79
578 579 2.153547 AAATGGCAAAAGGCGTCCGG 62.154 55.000 0.00 0.00 46.16 5.14
579 580 3.561120 ATGGCAAAAGGCGTCCGGA 62.561 57.895 0.00 0.00 46.16 5.14
580 581 3.733960 GGCAAAAGGCGTCCGGAC 61.734 66.667 25.28 25.28 46.16 4.79
581 582 3.733960 GCAAAAGGCGTCCGGACC 61.734 66.667 28.52 20.04 0.00 4.46
582 583 3.419759 CAAAAGGCGTCCGGACCG 61.420 66.667 28.52 22.76 0.00 4.79
600 601 3.174573 CGCGGTCCGAACGGTTAC 61.175 66.667 17.49 4.98 40.02 2.50
601 602 2.259511 GCGGTCCGAACGGTTACT 59.740 61.111 17.49 0.00 36.47 2.24
602 603 1.803117 GCGGTCCGAACGGTTACTC 60.803 63.158 17.49 0.00 36.47 2.59
603 604 1.512734 CGGTCCGAACGGTTACTCG 60.513 63.158 4.91 7.18 36.47 4.18
604 605 1.581447 GGTCCGAACGGTTACTCGT 59.419 57.895 12.93 0.00 46.08 4.18
605 606 0.730494 GGTCCGAACGGTTACTCGTG 60.730 60.000 12.93 0.00 43.07 4.35
606 607 0.730494 GTCCGAACGGTTACTCGTGG 60.730 60.000 12.93 0.00 43.07 4.94
607 608 1.172180 TCCGAACGGTTACTCGTGGT 61.172 55.000 12.93 0.00 43.07 4.16
608 609 0.318955 CCGAACGGTTACTCGTGGTT 60.319 55.000 4.99 0.00 43.07 3.67
609 610 1.490621 CGAACGGTTACTCGTGGTTT 58.509 50.000 0.00 0.00 43.07 3.27
610 611 1.190763 CGAACGGTTACTCGTGGTTTG 59.809 52.381 0.00 0.00 43.07 2.93
611 612 2.472816 GAACGGTTACTCGTGGTTTGA 58.527 47.619 0.00 0.00 43.07 2.69
612 613 2.600470 ACGGTTACTCGTGGTTTGAA 57.400 45.000 0.00 0.00 42.21 2.69
613 614 3.116079 ACGGTTACTCGTGGTTTGAAT 57.884 42.857 0.00 0.00 42.21 2.57
614 615 2.803956 ACGGTTACTCGTGGTTTGAATG 59.196 45.455 0.00 0.00 42.21 2.67
615 616 2.803956 CGGTTACTCGTGGTTTGAATGT 59.196 45.455 0.00 0.00 0.00 2.71
616 617 3.120786 CGGTTACTCGTGGTTTGAATGTC 60.121 47.826 0.00 0.00 0.00 3.06
617 618 3.810941 GGTTACTCGTGGTTTGAATGTCA 59.189 43.478 0.00 0.00 0.00 3.58
618 619 4.273969 GGTTACTCGTGGTTTGAATGTCAA 59.726 41.667 0.00 0.00 34.03 3.18
619 620 3.963383 ACTCGTGGTTTGAATGTCAAC 57.037 42.857 0.00 0.00 35.89 3.18
620 621 2.286833 ACTCGTGGTTTGAATGTCAACG 59.713 45.455 0.00 0.00 35.89 4.10
621 622 2.281517 TCGTGGTTTGAATGTCAACGT 58.718 42.857 0.00 0.00 35.89 3.99
622 623 2.678836 TCGTGGTTTGAATGTCAACGTT 59.321 40.909 0.00 0.00 35.89 3.99
623 624 2.781101 CGTGGTTTGAATGTCAACGTTG 59.219 45.455 22.35 22.35 35.89 4.10
624 625 3.112580 GTGGTTTGAATGTCAACGTTGG 58.887 45.455 27.02 9.69 35.89 3.77
625 626 3.017442 TGGTTTGAATGTCAACGTTGGA 58.983 40.909 27.02 15.01 35.89 3.53
626 627 3.066064 TGGTTTGAATGTCAACGTTGGAG 59.934 43.478 27.02 2.88 35.89 3.86
627 628 3.314080 GGTTTGAATGTCAACGTTGGAGA 59.686 43.478 27.02 13.20 35.89 3.71
628 629 4.023193 GGTTTGAATGTCAACGTTGGAGAT 60.023 41.667 27.02 14.75 35.89 2.75
629 630 4.747540 TTGAATGTCAACGTTGGAGATG 57.252 40.909 27.02 2.01 30.26 2.90
630 631 2.483877 TGAATGTCAACGTTGGAGATGC 59.516 45.455 27.02 16.04 0.00 3.91
631 632 1.453155 ATGTCAACGTTGGAGATGCC 58.547 50.000 27.02 8.02 37.10 4.40
632 633 0.605319 TGTCAACGTTGGAGATGCCC 60.605 55.000 27.02 6.78 34.97 5.36
633 634 0.321653 GTCAACGTTGGAGATGCCCT 60.322 55.000 27.02 0.00 34.97 5.19
634 635 1.066430 GTCAACGTTGGAGATGCCCTA 60.066 52.381 27.02 1.57 34.97 3.53
635 636 1.626321 TCAACGTTGGAGATGCCCTAA 59.374 47.619 27.02 1.02 34.97 2.69
636 637 2.238646 TCAACGTTGGAGATGCCCTAAT 59.761 45.455 27.02 0.00 34.97 1.73
637 638 3.452990 TCAACGTTGGAGATGCCCTAATA 59.547 43.478 27.02 0.35 34.97 0.98
638 639 4.102524 TCAACGTTGGAGATGCCCTAATAT 59.897 41.667 27.02 0.00 34.97 1.28
639 640 4.273148 ACGTTGGAGATGCCCTAATATC 57.727 45.455 0.00 0.00 34.97 1.63
640 641 3.646162 ACGTTGGAGATGCCCTAATATCA 59.354 43.478 0.00 0.00 34.97 2.15
641 642 4.287067 ACGTTGGAGATGCCCTAATATCAT 59.713 41.667 0.00 0.00 34.97 2.45
642 643 5.483937 ACGTTGGAGATGCCCTAATATCATA 59.516 40.000 0.00 0.00 34.97 2.15
643 644 6.013725 ACGTTGGAGATGCCCTAATATCATAA 60.014 38.462 0.00 0.00 34.97 1.90
644 645 6.536582 CGTTGGAGATGCCCTAATATCATAAG 59.463 42.308 0.00 0.00 34.97 1.73
645 646 7.398024 GTTGGAGATGCCCTAATATCATAAGT 58.602 38.462 0.00 0.00 34.97 2.24
646 647 7.574021 TGGAGATGCCCTAATATCATAAGTT 57.426 36.000 0.00 0.00 34.97 2.66
647 648 7.624549 TGGAGATGCCCTAATATCATAAGTTC 58.375 38.462 0.00 0.00 34.97 3.01
648 649 7.459125 TGGAGATGCCCTAATATCATAAGTTCT 59.541 37.037 0.00 0.00 34.97 3.01
649 650 8.325046 GGAGATGCCCTAATATCATAAGTTCTT 58.675 37.037 0.00 0.00 0.00 2.52
650 651 9.732130 GAGATGCCCTAATATCATAAGTTCTTT 57.268 33.333 0.00 0.00 0.00 2.52
694 695 7.864108 TTTGACATCACCTAATATCACAAGG 57.136 36.000 0.00 0.00 36.42 3.61
695 696 6.560003 TGACATCACCTAATATCACAAGGT 57.440 37.500 0.00 0.00 44.54 3.50
696 697 6.957631 TGACATCACCTAATATCACAAGGTT 58.042 36.000 0.00 0.00 41.75 3.50
697 698 7.047891 TGACATCACCTAATATCACAAGGTTC 58.952 38.462 0.00 0.00 41.75 3.62
698 699 6.957631 ACATCACCTAATATCACAAGGTTCA 58.042 36.000 0.00 0.00 41.75 3.18
699 700 7.577303 ACATCACCTAATATCACAAGGTTCAT 58.423 34.615 0.00 0.00 41.75 2.57
700 701 8.055181 ACATCACCTAATATCACAAGGTTCATT 58.945 33.333 0.00 0.00 41.75 2.57
701 702 7.864108 TCACCTAATATCACAAGGTTCATTG 57.136 36.000 0.00 0.00 41.75 2.82
702 703 6.318648 TCACCTAATATCACAAGGTTCATTGC 59.681 38.462 0.00 0.00 41.75 3.56
703 704 6.095300 CACCTAATATCACAAGGTTCATTGCA 59.905 38.462 0.00 0.00 41.75 4.08
704 705 6.095440 ACCTAATATCACAAGGTTCATTGCAC 59.905 38.462 0.00 0.00 40.82 4.57
705 706 5.981088 AATATCACAAGGTTCATTGCACA 57.019 34.783 0.00 0.00 33.28 4.57
706 707 3.648339 ATCACAAGGTTCATTGCACAC 57.352 42.857 0.00 0.00 33.28 3.82
707 708 1.333308 TCACAAGGTTCATTGCACACG 59.667 47.619 0.00 0.00 33.28 4.49
708 709 0.030638 ACAAGGTTCATTGCACACGC 59.969 50.000 0.00 0.00 39.24 5.34
718 719 3.548201 TGCACACGCATGTTTCTTG 57.452 47.368 0.00 0.00 45.36 3.02
719 720 0.737804 TGCACACGCATGTTTCTTGT 59.262 45.000 0.00 0.00 45.36 3.16
720 721 1.943340 TGCACACGCATGTTTCTTGTA 59.057 42.857 0.00 0.00 45.36 2.41
721 722 2.032117 TGCACACGCATGTTTCTTGTAG 60.032 45.455 0.00 0.00 45.36 2.74
722 723 2.032030 GCACACGCATGTTTCTTGTAGT 60.032 45.455 0.00 0.00 36.72 2.73
723 724 3.548014 GCACACGCATGTTTCTTGTAGTT 60.548 43.478 0.00 0.00 36.72 2.24
724 725 4.211389 CACACGCATGTTTCTTGTAGTTC 58.789 43.478 0.00 0.00 36.72 3.01
725 726 4.024893 CACACGCATGTTTCTTGTAGTTCT 60.025 41.667 0.00 0.00 36.72 3.01
726 727 4.574828 ACACGCATGTTTCTTGTAGTTCTT 59.425 37.500 0.00 0.00 34.46 2.52
727 728 5.065988 ACACGCATGTTTCTTGTAGTTCTTT 59.934 36.000 0.00 0.00 34.46 2.52
728 729 5.971202 CACGCATGTTTCTTGTAGTTCTTTT 59.029 36.000 0.00 0.00 0.00 2.27
729 730 6.472163 CACGCATGTTTCTTGTAGTTCTTTTT 59.528 34.615 0.00 0.00 0.00 1.94
804 806 5.885912 TCATAGGAAAGAAAATCCCGGAAAG 59.114 40.000 0.73 0.00 37.71 2.62
813 815 1.295020 ATCCCGGAAAGGTTGGATCA 58.705 50.000 0.73 0.00 38.74 2.92
854 856 2.547007 CCCCAAACCCTTTTTGCTAACG 60.547 50.000 0.00 0.00 0.00 3.18
934 967 4.722700 ACACATCAGCACCCGCCC 62.723 66.667 0.00 0.00 39.83 6.13
962 995 1.216064 CATCTCCCCCTTCACATCCA 58.784 55.000 0.00 0.00 0.00 3.41
979 1012 0.031314 CCATCGACCCAGATCTCACG 59.969 60.000 0.00 0.00 0.00 4.35
980 1013 0.596083 CATCGACCCAGATCTCACGC 60.596 60.000 0.00 0.00 0.00 5.34
1289 1341 2.422479 CTCAGTTCGGTCGGATCTAACA 59.578 50.000 8.18 0.00 0.00 2.41
1297 1349 3.195661 GGTCGGATCTAACACATGGTTC 58.804 50.000 0.00 0.00 40.96 3.62
1301 1353 1.940613 GATCTAACACATGGTTCGGGC 59.059 52.381 0.00 0.00 40.96 6.13
1318 1391 1.600916 GCTTTCGCAGGTGAAGGGT 60.601 57.895 6.80 0.00 35.78 4.34
1330 1403 0.331278 TGAAGGGTTTCATGGCGGAT 59.669 50.000 0.00 0.00 38.37 4.18
1524 1597 7.063898 TCTCTTCAATTTTAGATCTGTTGCTCG 59.936 37.037 5.18 0.00 0.00 5.03
1595 1668 9.528489 AGATCTATCTAGTTCCTATTCAAGACC 57.472 37.037 0.00 0.00 34.85 3.85
1845 2148 7.775053 ATTAGCCTGGACAAATGAAAACTAA 57.225 32.000 0.00 0.00 0.00 2.24
1850 2153 6.294731 GCCTGGACAAATGAAAACTAAGTCAT 60.295 38.462 0.00 0.00 36.00 3.06
1870 2230 2.672961 TGTTACTCTGGATTGCCTCG 57.327 50.000 0.00 0.00 34.31 4.63
1965 2326 7.710907 GTCCTACATGCTTGTCAGTTATTATCA 59.289 37.037 8.74 0.00 37.28 2.15
2543 4018 4.932200 CCACTTCTCACAGGTATTGACTTC 59.068 45.833 0.00 0.00 0.00 3.01
2572 4127 9.406828 TCACGTAATAAATGATACAGCACTATC 57.593 33.333 0.00 0.00 0.00 2.08
2574 4129 7.541091 ACGTAATAAATGATACAGCACTATCGG 59.459 37.037 0.00 0.00 0.00 4.18
2669 4224 9.982651 TTATTCACTGTATTATGCTAGGACTTC 57.017 33.333 0.00 0.00 0.00 3.01
2683 4238 3.690460 AGGACTTCCATGGTGAAATCAC 58.310 45.455 12.58 4.96 41.45 3.06
2706 4261 8.617809 TCACGCTGAGTAAAGAAATTAAGTTTT 58.382 29.630 0.00 0.00 0.00 2.43
2983 4539 5.105228 TCACCCTAACCCTAATAACTCAACG 60.105 44.000 0.00 0.00 0.00 4.10
3142 4706 5.365403 TTGTCCATGGCGTAAGTAAAAAG 57.635 39.130 6.96 0.00 41.68 2.27
3374 5589 3.712016 TGCTTCCAAGGTACATGCTTA 57.288 42.857 0.00 0.00 0.00 3.09
3407 5622 4.920927 GTGTGTTGTTTACTGCAGTTGTTT 59.079 37.500 27.06 0.99 0.00 2.83
3408 5623 6.087522 GTGTGTTGTTTACTGCAGTTGTTTA 58.912 36.000 27.06 2.78 0.00 2.01
3410 5625 7.911205 GTGTGTTGTTTACTGCAGTTGTTTATA 59.089 33.333 27.06 0.99 0.00 0.98
3411 5626 8.625651 TGTGTTGTTTACTGCAGTTGTTTATAT 58.374 29.630 27.06 0.00 0.00 0.86
3412 5627 8.901748 GTGTTGTTTACTGCAGTTGTTTATATG 58.098 33.333 27.06 0.00 0.00 1.78
3462 5763 9.076596 GTTCCAAATTTCATGTAGTATCAAAGC 57.923 33.333 0.00 0.00 0.00 3.51
3588 5891 1.073284 GTTTCCTGACTGGCTGGGTTA 59.927 52.381 6.59 0.00 36.34 2.85
3606 5909 8.203485 GCTGGGTTATTAAATCCATTTTGATCA 58.797 33.333 0.00 0.00 45.03 2.92
3617 5920 8.709272 AATCCATTTTGATCATTTGGGTTTTT 57.291 26.923 15.32 5.88 26.05 1.94
3618 5921 7.507733 TCCATTTTGATCATTTGGGTTTTTG 57.492 32.000 15.32 0.00 0.00 2.44
3619 5922 7.059156 TCCATTTTGATCATTTGGGTTTTTGT 58.941 30.769 15.32 0.00 0.00 2.83
3621 5924 6.690194 TTTTGATCATTTGGGTTTTTGTGG 57.310 33.333 0.00 0.00 0.00 4.17
3622 5925 5.365021 TTGATCATTTGGGTTTTTGTGGT 57.635 34.783 0.00 0.00 0.00 4.16
3623 5926 4.701765 TGATCATTTGGGTTTTTGTGGTG 58.298 39.130 0.00 0.00 0.00 4.17
3624 5927 4.163078 TGATCATTTGGGTTTTTGTGGTGT 59.837 37.500 0.00 0.00 0.00 4.16
3756 6296 5.156804 ACTAGTCTTTGACACGCTTTTTG 57.843 39.130 0.00 0.00 34.60 2.44
3775 6315 8.846211 GCTTTTTGTATATTAGGCAATACTCCA 58.154 33.333 0.00 0.00 31.24 3.86
3792 6714 0.562674 CCATTAGGCCATTTCCCCCT 59.437 55.000 5.01 0.00 0.00 4.79
3872 6795 2.760634 TTGAAACGAGGCTCAGCATA 57.239 45.000 15.95 0.00 0.00 3.14
3995 7061 2.880443 AGGCAATGTGATGGACTTGTT 58.120 42.857 0.00 0.00 0.00 2.83
4097 7163 1.071699 GTAACACAGGTGAGGCTTGGA 59.928 52.381 6.40 0.00 0.00 3.53
4212 7278 1.006571 GAGAAGGGTGTCGCGTTCA 60.007 57.895 5.77 4.13 0.00 3.18
4487 7554 4.214119 GTCTGCTTGCAAGTCTGTTGAATA 59.786 41.667 26.55 4.86 0.00 1.75
4495 7562 7.634671 TGCAAGTCTGTTGAATATTGATGAT 57.365 32.000 0.00 0.00 0.00 2.45
4586 7675 2.688507 CTGCATCGTTCTGTAAGTGGT 58.311 47.619 0.00 0.00 33.76 4.16
4613 7702 8.580720 CATGATACCTTTATGCTCTAGTACTGT 58.419 37.037 5.39 0.00 0.00 3.55
4645 7734 2.026729 TGGGTATTTGATTCGCCACTCA 60.027 45.455 0.00 0.00 0.00 3.41
4731 7821 3.696051 CGGCCCATGGATAGGATTATTTG 59.304 47.826 15.22 0.00 0.00 2.32
4759 7849 4.811908 CATTTGTCAATCACCTTGCATCA 58.188 39.130 0.00 0.00 34.66 3.07
4869 7959 6.648725 TCTTTTTGGGTATACAAATTTGCTGC 59.351 34.615 18.12 9.14 39.80 5.25
4975 8065 4.025647 GCACCTGACATACGATTTTCTAGC 60.026 45.833 0.00 0.00 0.00 3.42
5019 8109 0.460987 CTTAGCGCCAGGGAGAGTTG 60.461 60.000 2.29 0.00 0.00 3.16
5061 8151 1.956477 AGGTCAGGAACATTGCACAAC 59.044 47.619 0.00 0.00 0.00 3.32
5086 8176 2.246719 ATTAGGGAATGCTGCTCGAC 57.753 50.000 0.00 0.00 0.00 4.20
5123 8213 0.595310 GCTAATCGTGGAGCCGAGTC 60.595 60.000 0.00 0.00 40.68 3.36
5140 8230 4.002982 CGAGTCCACCTCATTGATTTCAA 58.997 43.478 0.00 0.00 40.48 2.69
5141 8231 4.637534 CGAGTCCACCTCATTGATTTCAAT 59.362 41.667 0.00 0.00 46.62 2.57
5142 8232 5.220739 CGAGTCCACCTCATTGATTTCAATC 60.221 44.000 2.83 0.00 44.10 2.67
5143 8233 5.573219 AGTCCACCTCATTGATTTCAATCA 58.427 37.500 2.83 0.00 44.10 2.57
5144 8234 6.192773 AGTCCACCTCATTGATTTCAATCAT 58.807 36.000 3.06 0.00 44.10 2.45
5145 8235 7.348815 AGTCCACCTCATTGATTTCAATCATA 58.651 34.615 3.06 0.00 44.10 2.15
5146 8236 7.501559 AGTCCACCTCATTGATTTCAATCATAG 59.498 37.037 3.06 2.61 44.10 2.23
5147 8237 6.263842 TCCACCTCATTGATTTCAATCATAGC 59.736 38.462 3.06 0.00 44.10 2.97
5148 8238 6.444633 CACCTCATTGATTTCAATCATAGCC 58.555 40.000 3.06 0.00 44.10 3.93
5149 8239 6.264744 CACCTCATTGATTTCAATCATAGCCT 59.735 38.462 3.06 0.00 44.10 4.58
5150 8240 6.489361 ACCTCATTGATTTCAATCATAGCCTC 59.511 38.462 3.06 0.00 44.10 4.70
5151 8241 6.715718 CCTCATTGATTTCAATCATAGCCTCT 59.284 38.462 3.06 0.00 44.10 3.69
5152 8242 7.230913 CCTCATTGATTTCAATCATAGCCTCTT 59.769 37.037 3.06 0.00 44.10 2.85
5153 8243 8.162878 TCATTGATTTCAATCATAGCCTCTTC 57.837 34.615 3.06 0.00 44.10 2.87
5154 8244 7.776500 TCATTGATTTCAATCATAGCCTCTTCA 59.224 33.333 3.06 0.00 44.10 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.227764 CACTCTCCATGGCATCCGG 60.228 63.158 6.96 0.00 0.00 5.14
13 14 0.108207 CTCCACTCTCCATGGCATCC 59.892 60.000 6.96 0.00 37.13 3.51
84 85 3.938963 CTGTATAAACGATGCCAGGTGTT 59.061 43.478 0.00 0.00 0.00 3.32
128 129 4.148166 CACGTCATTAAACACAACATCGG 58.852 43.478 0.00 0.00 0.00 4.18
129 130 3.597825 GCACGTCATTAAACACAACATCG 59.402 43.478 0.00 0.00 0.00 3.84
132 133 2.286477 CCGCACGTCATTAAACACAACA 60.286 45.455 0.00 0.00 0.00 3.33
133 134 2.303537 CCGCACGTCATTAAACACAAC 58.696 47.619 0.00 0.00 0.00 3.32
134 135 1.334239 GCCGCACGTCATTAAACACAA 60.334 47.619 0.00 0.00 0.00 3.33
135 136 0.236187 GCCGCACGTCATTAAACACA 59.764 50.000 0.00 0.00 0.00 3.72
136 137 0.515564 AGCCGCACGTCATTAAACAC 59.484 50.000 0.00 0.00 0.00 3.32
137 138 0.793861 GAGCCGCACGTCATTAAACA 59.206 50.000 0.00 0.00 0.00 2.83
138 139 0.247145 CGAGCCGCACGTCATTAAAC 60.247 55.000 1.67 0.00 0.00 2.01
139 140 2.074942 CGAGCCGCACGTCATTAAA 58.925 52.632 1.67 0.00 0.00 1.52
140 141 3.775314 CGAGCCGCACGTCATTAA 58.225 55.556 1.67 0.00 0.00 1.40
156 157 4.696172 GCCACACGTTCGTTCGCG 62.696 66.667 0.00 0.00 42.98 5.87
157 158 4.364409 GGCCACACGTTCGTTCGC 62.364 66.667 0.00 0.00 0.00 4.70
158 159 4.054455 CGGCCACACGTTCGTTCG 62.054 66.667 2.24 1.21 0.00 3.95
159 160 3.708734 CCGGCCACACGTTCGTTC 61.709 66.667 2.24 0.00 0.00 3.95
160 161 4.224274 TCCGGCCACACGTTCGTT 62.224 61.111 2.24 0.00 0.00 3.85
161 162 4.657824 CTCCGGCCACACGTTCGT 62.658 66.667 2.24 0.00 0.00 3.85
162 163 3.271706 TACTCCGGCCACACGTTCG 62.272 63.158 2.24 0.00 0.00 3.95
163 164 1.445582 CTACTCCGGCCACACGTTC 60.446 63.158 2.24 0.00 0.00 3.95
164 165 2.654877 CTACTCCGGCCACACGTT 59.345 61.111 2.24 0.00 0.00 3.99
165 166 3.379445 CCTACTCCGGCCACACGT 61.379 66.667 2.24 0.00 0.00 4.49
166 167 2.444700 AAACCTACTCCGGCCACACG 62.445 60.000 2.24 0.00 0.00 4.49
167 168 0.672711 GAAACCTACTCCGGCCACAC 60.673 60.000 2.24 0.00 0.00 3.82
168 169 0.834687 AGAAACCTACTCCGGCCACA 60.835 55.000 2.24 0.00 0.00 4.17
169 170 0.108281 GAGAAACCTACTCCGGCCAC 60.108 60.000 2.24 0.00 0.00 5.01
170 171 1.601419 CGAGAAACCTACTCCGGCCA 61.601 60.000 2.24 0.00 0.00 5.36
171 172 1.141234 CGAGAAACCTACTCCGGCC 59.859 63.158 0.00 0.00 0.00 6.13
172 173 1.141234 CCGAGAAACCTACTCCGGC 59.859 63.158 0.00 0.00 0.00 6.13
173 174 1.141234 GCCGAGAAACCTACTCCGG 59.859 63.158 0.00 0.00 34.14 5.14
174 175 1.226603 CGCCGAGAAACCTACTCCG 60.227 63.158 0.00 0.00 0.00 4.63
175 176 1.518792 GCGCCGAGAAACCTACTCC 60.519 63.158 0.00 0.00 0.00 3.85
176 177 0.179108 ATGCGCCGAGAAACCTACTC 60.179 55.000 4.18 0.00 0.00 2.59
177 178 0.460284 CATGCGCCGAGAAACCTACT 60.460 55.000 4.18 0.00 0.00 2.57
178 179 2.006772 CATGCGCCGAGAAACCTAC 58.993 57.895 4.18 0.00 0.00 3.18
179 180 1.813753 GCATGCGCCGAGAAACCTA 60.814 57.895 4.18 0.00 0.00 3.08
180 181 3.127533 GCATGCGCCGAGAAACCT 61.128 61.111 4.18 0.00 0.00 3.50
181 182 3.430862 TGCATGCGCCGAGAAACC 61.431 61.111 14.09 0.00 37.32 3.27
182 183 2.202349 GTGCATGCGCCGAGAAAC 60.202 61.111 20.70 2.10 37.32 2.78
183 184 2.186350 CTTGTGCATGCGCCGAGAAA 62.186 55.000 27.42 13.93 37.32 2.52
184 185 2.667874 TTGTGCATGCGCCGAGAA 60.668 55.556 27.42 12.83 37.32 2.87
185 186 3.120385 CTTGTGCATGCGCCGAGA 61.120 61.111 27.42 6.85 37.32 4.04
186 187 2.462255 AAACTTGTGCATGCGCCGAG 62.462 55.000 27.42 24.68 37.32 4.63
187 188 1.231296 TAAACTTGTGCATGCGCCGA 61.231 50.000 27.42 15.39 37.32 5.54
188 189 0.386605 TTAAACTTGTGCATGCGCCG 60.387 50.000 27.42 20.05 37.32 6.46
189 190 1.655099 CATTAAACTTGTGCATGCGCC 59.345 47.619 27.42 14.12 37.32 6.53
190 191 1.655099 CCATTAAACTTGTGCATGCGC 59.345 47.619 24.25 24.25 39.24 6.09
191 192 3.119884 TCTCCATTAAACTTGTGCATGCG 60.120 43.478 14.09 0.35 0.00 4.73
192 193 4.439305 TCTCCATTAAACTTGTGCATGC 57.561 40.909 11.82 11.82 0.00 4.06
193 194 5.865552 CCTTTCTCCATTAAACTTGTGCATG 59.134 40.000 0.00 0.00 0.00 4.06
194 195 5.567423 GCCTTTCTCCATTAAACTTGTGCAT 60.567 40.000 0.00 0.00 0.00 3.96
195 196 4.261994 GCCTTTCTCCATTAAACTTGTGCA 60.262 41.667 0.00 0.00 0.00 4.57
196 197 4.237724 GCCTTTCTCCATTAAACTTGTGC 58.762 43.478 0.00 0.00 0.00 4.57
197 198 4.475944 CGCCTTTCTCCATTAAACTTGTG 58.524 43.478 0.00 0.00 0.00 3.33
198 199 3.506067 CCGCCTTTCTCCATTAAACTTGT 59.494 43.478 0.00 0.00 0.00 3.16
199 200 3.119495 CCCGCCTTTCTCCATTAAACTTG 60.119 47.826 0.00 0.00 0.00 3.16
200 201 3.089284 CCCGCCTTTCTCCATTAAACTT 58.911 45.455 0.00 0.00 0.00 2.66
201 202 2.723273 CCCGCCTTTCTCCATTAAACT 58.277 47.619 0.00 0.00 0.00 2.66
202 203 1.134367 GCCCGCCTTTCTCCATTAAAC 59.866 52.381 0.00 0.00 0.00 2.01
203 204 1.272203 TGCCCGCCTTTCTCCATTAAA 60.272 47.619 0.00 0.00 0.00 1.52
204 205 0.329931 TGCCCGCCTTTCTCCATTAA 59.670 50.000 0.00 0.00 0.00 1.40
205 206 0.550914 ATGCCCGCCTTTCTCCATTA 59.449 50.000 0.00 0.00 0.00 1.90
206 207 0.550914 TATGCCCGCCTTTCTCCATT 59.449 50.000 0.00 0.00 0.00 3.16
207 208 0.179018 GTATGCCCGCCTTTCTCCAT 60.179 55.000 0.00 0.00 0.00 3.41
208 209 1.223487 GTATGCCCGCCTTTCTCCA 59.777 57.895 0.00 0.00 0.00 3.86
209 210 0.815615 CAGTATGCCCGCCTTTCTCC 60.816 60.000 0.00 0.00 0.00 3.71
210 211 0.107654 ACAGTATGCCCGCCTTTCTC 60.108 55.000 0.00 0.00 42.53 2.87
211 212 1.139058 CTACAGTATGCCCGCCTTTCT 59.861 52.381 0.00 0.00 42.53 2.52
212 213 1.583054 CTACAGTATGCCCGCCTTTC 58.417 55.000 0.00 0.00 42.53 2.62
213 214 0.463833 GCTACAGTATGCCCGCCTTT 60.464 55.000 0.00 0.00 42.53 3.11
214 215 1.146263 GCTACAGTATGCCCGCCTT 59.854 57.895 0.00 0.00 42.53 4.35
215 216 2.808206 GGCTACAGTATGCCCGCCT 61.808 63.158 8.98 0.00 42.53 5.52
216 217 2.280865 GGCTACAGTATGCCCGCC 60.281 66.667 8.98 1.78 42.53 6.13
217 218 2.661866 CGGCTACAGTATGCCCGC 60.662 66.667 12.76 0.00 45.90 6.13
218 219 0.461339 AAACGGCTACAGTATGCCCG 60.461 55.000 12.76 11.92 46.50 6.13
219 220 2.607631 TAAACGGCTACAGTATGCCC 57.392 50.000 12.76 0.50 45.90 5.36
220 221 4.788521 GCATTTAAACGGCTACAGTATGCC 60.789 45.833 9.78 9.78 42.53 4.40
221 222 4.279659 GCATTTAAACGGCTACAGTATGC 58.720 43.478 6.47 0.00 42.53 3.14
222 223 4.514506 CGCATTTAAACGGCTACAGTATG 58.485 43.478 10.81 0.00 46.00 2.39
223 224 3.558418 CCGCATTTAAACGGCTACAGTAT 59.442 43.478 4.52 0.00 43.44 2.12
224 225 2.931325 CCGCATTTAAACGGCTACAGTA 59.069 45.455 4.52 0.00 43.44 2.74
225 226 1.735571 CCGCATTTAAACGGCTACAGT 59.264 47.619 4.52 0.00 43.44 3.55
226 227 2.452006 CCGCATTTAAACGGCTACAG 57.548 50.000 4.52 0.00 43.44 2.74
233 234 2.791158 GCCTCATCACCGCATTTAAACG 60.791 50.000 0.00 0.00 0.00 3.60
234 235 2.163412 TGCCTCATCACCGCATTTAAAC 59.837 45.455 0.00 0.00 0.00 2.01
235 236 2.441410 TGCCTCATCACCGCATTTAAA 58.559 42.857 0.00 0.00 0.00 1.52
236 237 2.121291 TGCCTCATCACCGCATTTAA 57.879 45.000 0.00 0.00 0.00 1.52
237 238 1.948834 CATGCCTCATCACCGCATTTA 59.051 47.619 0.00 0.00 41.18 1.40
238 239 0.742505 CATGCCTCATCACCGCATTT 59.257 50.000 0.00 0.00 41.18 2.32
239 240 0.394762 ACATGCCTCATCACCGCATT 60.395 50.000 0.00 0.00 41.18 3.56
240 241 0.816825 GACATGCCTCATCACCGCAT 60.817 55.000 0.00 0.00 43.86 4.73
241 242 1.450134 GACATGCCTCATCACCGCA 60.450 57.895 0.00 0.00 36.84 5.69
242 243 1.434622 CTGACATGCCTCATCACCGC 61.435 60.000 0.00 0.00 0.00 5.68
243 244 1.434622 GCTGACATGCCTCATCACCG 61.435 60.000 0.00 0.00 0.00 4.94
244 245 2.401967 GCTGACATGCCTCATCACC 58.598 57.895 0.00 0.00 0.00 4.02
296 297 2.202388 CAGCATTGAAGCGGTGCG 60.202 61.111 0.00 0.00 43.37 5.34
297 298 1.305219 TACCAGCATTGAAGCGGTGC 61.305 55.000 10.94 0.00 40.08 5.01
298 299 0.729116 CTACCAGCATTGAAGCGGTG 59.271 55.000 10.94 2.93 40.08 4.94
299 300 0.324943 ACTACCAGCATTGAAGCGGT 59.675 50.000 0.00 0.00 41.68 5.68
300 301 0.729116 CACTACCAGCATTGAAGCGG 59.271 55.000 0.00 0.00 40.15 5.52
301 302 1.662629 CTCACTACCAGCATTGAAGCG 59.337 52.381 0.00 0.00 40.15 4.68
302 303 2.977914 TCTCACTACCAGCATTGAAGC 58.022 47.619 0.00 0.00 0.00 3.86
303 304 4.573900 ACTTCTCACTACCAGCATTGAAG 58.426 43.478 0.00 0.00 36.65 3.02
304 305 4.623932 ACTTCTCACTACCAGCATTGAA 57.376 40.909 0.00 0.00 0.00 2.69
305 306 4.202357 ACAACTTCTCACTACCAGCATTGA 60.202 41.667 0.00 0.00 0.00 2.57
306 307 4.067896 ACAACTTCTCACTACCAGCATTG 58.932 43.478 0.00 0.00 0.00 2.82
307 308 4.067896 CACAACTTCTCACTACCAGCATT 58.932 43.478 0.00 0.00 0.00 3.56
308 309 3.071602 ACACAACTTCTCACTACCAGCAT 59.928 43.478 0.00 0.00 0.00 3.79
309 310 2.434336 ACACAACTTCTCACTACCAGCA 59.566 45.455 0.00 0.00 0.00 4.41
310 311 3.060602 GACACAACTTCTCACTACCAGC 58.939 50.000 0.00 0.00 0.00 4.85
311 312 3.654414 GGACACAACTTCTCACTACCAG 58.346 50.000 0.00 0.00 0.00 4.00
312 313 2.035449 CGGACACAACTTCTCACTACCA 59.965 50.000 0.00 0.00 0.00 3.25
313 314 2.673833 CGGACACAACTTCTCACTACC 58.326 52.381 0.00 0.00 0.00 3.18
314 315 2.059541 GCGGACACAACTTCTCACTAC 58.940 52.381 0.00 0.00 0.00 2.73
315 316 1.961394 AGCGGACACAACTTCTCACTA 59.039 47.619 0.00 0.00 0.00 2.74
316 317 0.753262 AGCGGACACAACTTCTCACT 59.247 50.000 0.00 0.00 0.00 3.41
317 318 1.140816 GAGCGGACACAACTTCTCAC 58.859 55.000 0.00 0.00 0.00 3.51
318 319 1.040646 AGAGCGGACACAACTTCTCA 58.959 50.000 0.00 0.00 0.00 3.27
319 320 2.416162 CCTAGAGCGGACACAACTTCTC 60.416 54.545 0.00 0.00 0.00 2.87
320 321 1.546476 CCTAGAGCGGACACAACTTCT 59.454 52.381 0.00 0.00 0.00 2.85
321 322 1.997669 CCTAGAGCGGACACAACTTC 58.002 55.000 0.00 0.00 0.00 3.01
322 323 0.037232 GCCTAGAGCGGACACAACTT 60.037 55.000 0.00 0.00 0.00 2.66
323 324 1.592223 GCCTAGAGCGGACACAACT 59.408 57.895 0.00 0.00 0.00 3.16
324 325 1.448013 GGCCTAGAGCGGACACAAC 60.448 63.158 0.00 0.00 45.17 3.32
325 326 2.978824 GGCCTAGAGCGGACACAA 59.021 61.111 0.00 0.00 45.17 3.33
326 327 3.449227 CGGCCTAGAGCGGACACA 61.449 66.667 0.00 0.00 44.26 3.72
327 328 4.208686 CCGGCCTAGAGCGGACAC 62.209 72.222 0.00 0.00 44.26 3.67
356 357 2.150837 GTCGTTGTAGAGCGGTCGC 61.151 63.158 9.28 7.32 42.33 5.19
357 358 0.179171 ATGTCGTTGTAGAGCGGTCG 60.179 55.000 9.28 0.00 0.00 4.79
358 359 1.135489 TCATGTCGTTGTAGAGCGGTC 60.135 52.381 6.48 6.48 0.00 4.79
359 360 0.885879 TCATGTCGTTGTAGAGCGGT 59.114 50.000 0.00 0.00 0.00 5.68
360 361 1.990799 TTCATGTCGTTGTAGAGCGG 58.009 50.000 0.00 0.00 0.00 5.52
361 362 2.923655 ACATTCATGTCGTTGTAGAGCG 59.076 45.455 0.00 0.00 35.87 5.03
362 363 3.062639 CCACATTCATGTCGTTGTAGAGC 59.937 47.826 0.00 0.00 39.39 4.09
363 364 4.327357 GTCCACATTCATGTCGTTGTAGAG 59.673 45.833 0.00 0.00 39.39 2.43
364 365 4.242475 GTCCACATTCATGTCGTTGTAGA 58.758 43.478 0.00 0.00 39.39 2.59
365 366 3.993736 TGTCCACATTCATGTCGTTGTAG 59.006 43.478 0.00 0.00 39.39 2.74
366 367 3.993736 CTGTCCACATTCATGTCGTTGTA 59.006 43.478 0.00 0.00 39.39 2.41
367 368 2.807967 CTGTCCACATTCATGTCGTTGT 59.192 45.455 0.00 0.00 39.39 3.32
368 369 2.413239 GCTGTCCACATTCATGTCGTTG 60.413 50.000 0.00 0.00 39.39 4.10
369 370 1.806542 GCTGTCCACATTCATGTCGTT 59.193 47.619 0.00 0.00 39.39 3.85
370 371 1.002430 AGCTGTCCACATTCATGTCGT 59.998 47.619 0.00 0.00 39.39 4.34
371 372 1.395954 CAGCTGTCCACATTCATGTCG 59.604 52.381 5.25 0.00 39.39 4.35
372 373 1.741706 CCAGCTGTCCACATTCATGTC 59.258 52.381 13.81 0.00 39.39 3.06
373 374 1.830279 CCAGCTGTCCACATTCATGT 58.170 50.000 13.81 0.00 42.84 3.21
374 375 0.454600 GCCAGCTGTCCACATTCATG 59.545 55.000 13.81 0.00 0.00 3.07
375 376 1.028330 CGCCAGCTGTCCACATTCAT 61.028 55.000 13.81 0.00 0.00 2.57
376 377 1.672030 CGCCAGCTGTCCACATTCA 60.672 57.895 13.81 0.00 0.00 2.57
377 378 3.044059 GCGCCAGCTGTCCACATTC 62.044 63.158 13.81 0.00 41.01 2.67
378 379 3.058160 GCGCCAGCTGTCCACATT 61.058 61.111 13.81 0.00 41.01 2.71
395 396 3.726517 CACGTGCTTTCTGCCCGG 61.727 66.667 0.82 0.00 46.47 5.73
397 398 3.365265 CCCACGTGCTTTCTGCCC 61.365 66.667 10.91 0.00 42.00 5.36
398 399 4.043200 GCCCACGTGCTTTCTGCC 62.043 66.667 10.91 0.00 42.00 4.85
399 400 4.389576 CGCCCACGTGCTTTCTGC 62.390 66.667 10.91 4.33 43.25 4.26
410 411 0.252197 AACCTTCTATCCACGCCCAC 59.748 55.000 0.00 0.00 0.00 4.61
411 412 0.988832 AAACCTTCTATCCACGCCCA 59.011 50.000 0.00 0.00 0.00 5.36
412 413 2.994186 TAAACCTTCTATCCACGCCC 57.006 50.000 0.00 0.00 0.00 6.13
413 414 3.139077 CCATAAACCTTCTATCCACGCC 58.861 50.000 0.00 0.00 0.00 5.68
414 415 3.805207 ACCATAAACCTTCTATCCACGC 58.195 45.455 0.00 0.00 0.00 5.34
415 416 5.539048 CCTACCATAAACCTTCTATCCACG 58.461 45.833 0.00 0.00 0.00 4.94
416 417 5.306394 GCCTACCATAAACCTTCTATCCAC 58.694 45.833 0.00 0.00 0.00 4.02
417 418 4.349930 GGCCTACCATAAACCTTCTATCCA 59.650 45.833 0.00 0.00 35.26 3.41
418 419 4.349930 TGGCCTACCATAAACCTTCTATCC 59.650 45.833 3.32 0.00 42.67 2.59
419 420 5.562298 TGGCCTACCATAAACCTTCTATC 57.438 43.478 3.32 0.00 42.67 2.08
432 433 0.325296 CTGACTACCCTGGCCTACCA 60.325 60.000 3.32 0.00 46.51 3.25
433 434 0.325390 ACTGACTACCCTGGCCTACC 60.325 60.000 3.32 0.00 0.00 3.18
434 435 2.308690 CTACTGACTACCCTGGCCTAC 58.691 57.143 3.32 0.00 0.00 3.18
435 436 1.411216 GCTACTGACTACCCTGGCCTA 60.411 57.143 3.32 0.00 0.00 3.93
436 437 0.688087 GCTACTGACTACCCTGGCCT 60.688 60.000 3.32 0.00 0.00 5.19
437 438 1.823976 GCTACTGACTACCCTGGCC 59.176 63.158 0.00 0.00 0.00 5.36
438 439 1.437986 CGCTACTGACTACCCTGGC 59.562 63.158 0.00 0.00 0.00 4.85
439 440 1.392710 CCCGCTACTGACTACCCTGG 61.393 65.000 0.00 0.00 0.00 4.45
440 441 0.683504 ACCCGCTACTGACTACCCTG 60.684 60.000 0.00 0.00 0.00 4.45
441 442 0.683504 CACCCGCTACTGACTACCCT 60.684 60.000 0.00 0.00 0.00 4.34
442 443 0.969409 ACACCCGCTACTGACTACCC 60.969 60.000 0.00 0.00 0.00 3.69
443 444 0.172803 CACACCCGCTACTGACTACC 59.827 60.000 0.00 0.00 0.00 3.18
444 445 1.135460 GTCACACCCGCTACTGACTAC 60.135 57.143 0.00 0.00 31.99 2.73
445 446 1.171308 GTCACACCCGCTACTGACTA 58.829 55.000 0.00 0.00 31.99 2.59
446 447 0.826256 TGTCACACCCGCTACTGACT 60.826 55.000 0.00 0.00 35.14 3.41
447 448 0.246635 ATGTCACACCCGCTACTGAC 59.753 55.000 0.00 0.00 34.74 3.51
448 449 0.530744 GATGTCACACCCGCTACTGA 59.469 55.000 0.00 0.00 0.00 3.41
449 450 0.802222 CGATGTCACACCCGCTACTG 60.802 60.000 0.00 0.00 0.00 2.74
450 451 0.963856 TCGATGTCACACCCGCTACT 60.964 55.000 0.00 0.00 0.00 2.57
451 452 0.102481 ATCGATGTCACACCCGCTAC 59.898 55.000 0.00 0.00 0.00 3.58
452 453 0.384309 GATCGATGTCACACCCGCTA 59.616 55.000 0.54 0.00 0.00 4.26
453 454 1.141881 GATCGATGTCACACCCGCT 59.858 57.895 0.54 0.00 0.00 5.52
454 455 1.141881 AGATCGATGTCACACCCGC 59.858 57.895 0.54 0.00 0.00 6.13
455 456 0.455815 TCAGATCGATGTCACACCCG 59.544 55.000 0.54 0.00 0.00 5.28
456 457 2.271800 GTTCAGATCGATGTCACACCC 58.728 52.381 0.54 0.00 0.00 4.61
457 458 1.920574 CGTTCAGATCGATGTCACACC 59.079 52.381 0.54 0.00 0.00 4.16
458 459 1.321743 GCGTTCAGATCGATGTCACAC 59.678 52.381 0.54 0.00 0.00 3.82
459 460 1.629013 GCGTTCAGATCGATGTCACA 58.371 50.000 0.54 0.00 0.00 3.58
460 461 0.924090 GGCGTTCAGATCGATGTCAC 59.076 55.000 0.54 0.00 0.00 3.67
461 462 0.179111 GGGCGTTCAGATCGATGTCA 60.179 55.000 0.54 0.00 0.00 3.58
462 463 1.209275 CGGGCGTTCAGATCGATGTC 61.209 60.000 0.54 0.00 0.00 3.06
463 464 1.226974 CGGGCGTTCAGATCGATGT 60.227 57.895 0.54 0.00 0.00 3.06
464 465 2.589492 GCGGGCGTTCAGATCGATG 61.589 63.158 0.54 0.00 0.00 3.84
465 466 2.279517 GCGGGCGTTCAGATCGAT 60.280 61.111 0.00 0.00 0.00 3.59
466 467 2.773397 TTTGCGGGCGTTCAGATCGA 62.773 55.000 5.02 0.00 0.00 3.59
467 468 1.906994 TTTTGCGGGCGTTCAGATCG 61.907 55.000 0.00 0.00 0.00 3.69
468 469 0.454452 GTTTTGCGGGCGTTCAGATC 60.454 55.000 0.00 0.00 0.00 2.75
469 470 1.579429 GTTTTGCGGGCGTTCAGAT 59.421 52.632 0.00 0.00 0.00 2.90
470 471 2.548295 GGTTTTGCGGGCGTTCAGA 61.548 57.895 0.00 0.00 0.00 3.27
471 472 2.050442 GGTTTTGCGGGCGTTCAG 60.050 61.111 0.00 0.00 0.00 3.02
472 473 3.597728 GGGTTTTGCGGGCGTTCA 61.598 61.111 0.00 0.00 0.00 3.18
473 474 4.351938 GGGGTTTTGCGGGCGTTC 62.352 66.667 0.00 0.00 0.00 3.95
516 517 3.721851 CGGTCCGGACGTGTTTTT 58.278 55.556 27.68 0.00 0.00 1.94
527 528 3.374402 AGTCAGCAGACCGGTCCG 61.374 66.667 30.82 22.51 46.15 4.79
528 529 2.262915 CAGTCAGCAGACCGGTCC 59.737 66.667 30.82 16.68 46.15 4.46
529 530 2.262915 CCAGTCAGCAGACCGGTC 59.737 66.667 27.67 27.67 46.15 4.79
531 532 2.047844 CACCAGTCAGCAGACCGG 60.048 66.667 9.81 9.81 45.95 5.28
532 533 2.740055 GCACCAGTCAGCAGACCG 60.740 66.667 5.52 0.00 46.15 4.79
533 534 2.427320 TGCACCAGTCAGCAGACC 59.573 61.111 5.52 0.00 46.15 3.85
537 538 1.297689 GATCCTGCACCAGTCAGCA 59.702 57.895 0.00 0.00 39.25 4.41
538 539 1.812922 CGATCCTGCACCAGTCAGC 60.813 63.158 0.00 0.00 0.00 4.26
539 540 0.036952 AACGATCCTGCACCAGTCAG 60.037 55.000 0.00 0.00 0.00 3.51
540 541 1.262417 TAACGATCCTGCACCAGTCA 58.738 50.000 0.00 0.00 0.00 3.41
541 542 2.380084 TTAACGATCCTGCACCAGTC 57.620 50.000 0.00 0.00 0.00 3.51
542 543 2.851263 TTTAACGATCCTGCACCAGT 57.149 45.000 0.00 0.00 0.00 4.00
543 544 2.355756 CCATTTAACGATCCTGCACCAG 59.644 50.000 0.00 0.00 0.00 4.00
544 545 2.364632 CCATTTAACGATCCTGCACCA 58.635 47.619 0.00 0.00 0.00 4.17
545 546 1.065551 GCCATTTAACGATCCTGCACC 59.934 52.381 0.00 0.00 0.00 5.01
546 547 1.742831 TGCCATTTAACGATCCTGCAC 59.257 47.619 0.00 0.00 0.00 4.57
547 548 2.121291 TGCCATTTAACGATCCTGCA 57.879 45.000 0.00 0.00 0.00 4.41
548 549 3.502191 TTTGCCATTTAACGATCCTGC 57.498 42.857 0.00 0.00 0.00 4.85
549 550 4.423732 CCTTTTGCCATTTAACGATCCTG 58.576 43.478 0.00 0.00 0.00 3.86
550 551 3.119137 GCCTTTTGCCATTTAACGATCCT 60.119 43.478 0.00 0.00 0.00 3.24
551 552 3.186909 GCCTTTTGCCATTTAACGATCC 58.813 45.455 0.00 0.00 0.00 3.36
552 553 2.851824 CGCCTTTTGCCATTTAACGATC 59.148 45.455 0.00 0.00 36.24 3.69
553 554 2.230266 ACGCCTTTTGCCATTTAACGAT 59.770 40.909 0.00 0.00 36.24 3.73
554 555 1.609555 ACGCCTTTTGCCATTTAACGA 59.390 42.857 0.00 0.00 36.24 3.85
555 556 1.982913 GACGCCTTTTGCCATTTAACG 59.017 47.619 0.00 0.00 36.24 3.18
556 557 2.333926 GGACGCCTTTTGCCATTTAAC 58.666 47.619 0.00 0.00 36.24 2.01
557 558 1.068194 CGGACGCCTTTTGCCATTTAA 60.068 47.619 0.00 0.00 36.24 1.52
558 559 0.523966 CGGACGCCTTTTGCCATTTA 59.476 50.000 0.00 0.00 36.24 1.40
559 560 1.288752 CGGACGCCTTTTGCCATTT 59.711 52.632 0.00 0.00 36.24 2.32
560 561 2.635443 CCGGACGCCTTTTGCCATT 61.635 57.895 0.00 0.00 36.24 3.16
561 562 3.061848 CCGGACGCCTTTTGCCAT 61.062 61.111 0.00 0.00 36.24 4.40
562 563 4.257654 TCCGGACGCCTTTTGCCA 62.258 61.111 0.00 0.00 36.24 4.92
563 564 3.733960 GTCCGGACGCCTTTTGCC 61.734 66.667 20.85 0.00 36.24 4.52
564 565 3.733960 GGTCCGGACGCCTTTTGC 61.734 66.667 27.68 7.98 0.00 3.68
565 566 3.419759 CGGTCCGGACGCCTTTTG 61.420 66.667 27.68 7.80 0.00 2.44
583 584 3.174573 GTAACCGTTCGGACCGCG 61.175 66.667 18.28 8.05 0.00 6.46
584 585 1.803117 GAGTAACCGTTCGGACCGC 60.803 63.158 18.28 0.00 0.00 5.68
585 586 1.512734 CGAGTAACCGTTCGGACCG 60.513 63.158 18.28 7.84 33.39 4.79
586 587 0.730494 CACGAGTAACCGTTCGGACC 60.730 60.000 18.28 5.07 41.29 4.46
587 588 0.730494 CCACGAGTAACCGTTCGGAC 60.730 60.000 18.28 6.61 41.29 4.79
588 589 1.172180 ACCACGAGTAACCGTTCGGA 61.172 55.000 18.28 0.00 41.29 4.55
589 590 0.318955 AACCACGAGTAACCGTTCGG 60.319 55.000 9.81 9.81 41.29 4.30
590 591 1.190763 CAAACCACGAGTAACCGTTCG 59.809 52.381 0.00 0.00 41.29 3.95
591 592 2.472816 TCAAACCACGAGTAACCGTTC 58.527 47.619 0.00 0.00 41.29 3.95
592 593 2.600470 TCAAACCACGAGTAACCGTT 57.400 45.000 0.00 0.00 41.29 4.44
593 594 2.600470 TTCAAACCACGAGTAACCGT 57.400 45.000 0.00 0.00 44.43 4.83
594 595 2.803956 ACATTCAAACCACGAGTAACCG 59.196 45.455 0.00 0.00 0.00 4.44
595 596 3.810941 TGACATTCAAACCACGAGTAACC 59.189 43.478 0.00 0.00 0.00 2.85
596 597 5.202640 GTTGACATTCAAACCACGAGTAAC 58.797 41.667 0.00 0.00 38.22 2.50
597 598 4.025563 CGTTGACATTCAAACCACGAGTAA 60.026 41.667 0.00 0.00 38.22 2.24
598 599 3.491639 CGTTGACATTCAAACCACGAGTA 59.508 43.478 0.00 0.00 38.22 2.59
599 600 2.286833 CGTTGACATTCAAACCACGAGT 59.713 45.455 0.00 0.00 38.22 4.18
600 601 2.286833 ACGTTGACATTCAAACCACGAG 59.713 45.455 5.41 0.00 38.22 4.18
601 602 2.281517 ACGTTGACATTCAAACCACGA 58.718 42.857 5.41 0.00 38.22 4.35
602 603 2.748461 ACGTTGACATTCAAACCACG 57.252 45.000 0.00 0.00 38.22 4.94
603 604 3.112580 CCAACGTTGACATTCAAACCAC 58.887 45.455 29.35 0.00 38.22 4.16
604 605 3.017442 TCCAACGTTGACATTCAAACCA 58.983 40.909 29.35 0.00 38.22 3.67
605 606 3.314080 TCTCCAACGTTGACATTCAAACC 59.686 43.478 29.35 0.00 38.22 3.27
606 607 4.545823 TCTCCAACGTTGACATTCAAAC 57.454 40.909 29.35 0.00 38.22 2.93
607 608 4.556501 GCATCTCCAACGTTGACATTCAAA 60.557 41.667 29.35 6.24 38.22 2.69
608 609 3.058293 GCATCTCCAACGTTGACATTCAA 60.058 43.478 29.35 7.75 33.32 2.69
609 610 2.483877 GCATCTCCAACGTTGACATTCA 59.516 45.455 29.35 7.26 0.00 2.57
610 611 2.159517 GGCATCTCCAACGTTGACATTC 60.160 50.000 29.35 11.57 34.01 2.67
611 612 1.812571 GGCATCTCCAACGTTGACATT 59.187 47.619 29.35 8.74 34.01 2.71
612 613 1.453155 GGCATCTCCAACGTTGACAT 58.547 50.000 29.35 14.26 34.01 3.06
613 614 0.605319 GGGCATCTCCAACGTTGACA 60.605 55.000 29.35 14.10 36.21 3.58
614 615 0.321653 AGGGCATCTCCAACGTTGAC 60.322 55.000 29.35 4.70 36.21 3.18
615 616 1.271856 TAGGGCATCTCCAACGTTGA 58.728 50.000 29.35 14.09 36.21 3.18
616 617 2.107950 TTAGGGCATCTCCAACGTTG 57.892 50.000 21.47 21.47 36.21 4.10
617 618 4.102524 TGATATTAGGGCATCTCCAACGTT 59.897 41.667 0.00 0.00 36.21 3.99
618 619 3.646162 TGATATTAGGGCATCTCCAACGT 59.354 43.478 0.00 0.00 36.21 3.99
619 620 4.271696 TGATATTAGGGCATCTCCAACG 57.728 45.455 0.00 0.00 36.21 4.10
620 621 7.398024 ACTTATGATATTAGGGCATCTCCAAC 58.602 38.462 0.00 0.00 36.21 3.77
621 622 7.574021 ACTTATGATATTAGGGCATCTCCAA 57.426 36.000 0.00 0.00 36.21 3.53
622 623 7.459125 AGAACTTATGATATTAGGGCATCTCCA 59.541 37.037 0.00 0.00 36.21 3.86
623 624 7.856415 AGAACTTATGATATTAGGGCATCTCC 58.144 38.462 0.00 0.00 0.00 3.71
624 625 9.732130 AAAGAACTTATGATATTAGGGCATCTC 57.268 33.333 0.00 0.00 0.00 2.75
668 669 8.739039 CCTTGTGATATTAGGTGATGTCAAAAA 58.261 33.333 0.00 0.00 30.46 1.94
669 670 7.888021 ACCTTGTGATATTAGGTGATGTCAAAA 59.112 33.333 0.00 0.00 40.68 2.44
670 671 7.402054 ACCTTGTGATATTAGGTGATGTCAAA 58.598 34.615 0.00 0.00 40.68 2.69
671 672 6.957631 ACCTTGTGATATTAGGTGATGTCAA 58.042 36.000 0.00 0.00 40.68 3.18
672 673 6.560003 ACCTTGTGATATTAGGTGATGTCA 57.440 37.500 0.00 0.00 40.68 3.58
673 674 7.047891 TGAACCTTGTGATATTAGGTGATGTC 58.952 38.462 0.00 0.00 41.33 3.06
674 675 6.957631 TGAACCTTGTGATATTAGGTGATGT 58.042 36.000 0.00 0.00 41.33 3.06
675 676 8.347771 CAATGAACCTTGTGATATTAGGTGATG 58.652 37.037 0.00 0.00 41.33 3.07
676 677 7.013655 GCAATGAACCTTGTGATATTAGGTGAT 59.986 37.037 0.00 0.00 41.33 3.06
677 678 6.318648 GCAATGAACCTTGTGATATTAGGTGA 59.681 38.462 0.00 0.00 41.33 4.02
678 679 6.095300 TGCAATGAACCTTGTGATATTAGGTG 59.905 38.462 0.00 0.00 41.33 4.00
679 680 6.095440 GTGCAATGAACCTTGTGATATTAGGT 59.905 38.462 0.00 0.00 43.98 3.08
680 681 6.095300 TGTGCAATGAACCTTGTGATATTAGG 59.905 38.462 0.00 0.00 35.14 2.69
681 682 6.968904 GTGTGCAATGAACCTTGTGATATTAG 59.031 38.462 0.00 0.00 0.00 1.73
682 683 6.403092 CGTGTGCAATGAACCTTGTGATATTA 60.403 38.462 0.00 0.00 0.00 0.98
683 684 5.619757 CGTGTGCAATGAACCTTGTGATATT 60.620 40.000 0.00 0.00 0.00 1.28
684 685 4.142622 CGTGTGCAATGAACCTTGTGATAT 60.143 41.667 0.00 0.00 0.00 1.63
685 686 3.188254 CGTGTGCAATGAACCTTGTGATA 59.812 43.478 0.00 0.00 0.00 2.15
686 687 2.030893 CGTGTGCAATGAACCTTGTGAT 60.031 45.455 0.00 0.00 0.00 3.06
687 688 1.333308 CGTGTGCAATGAACCTTGTGA 59.667 47.619 0.00 0.00 0.00 3.58
688 689 1.757574 CGTGTGCAATGAACCTTGTG 58.242 50.000 0.00 0.00 0.00 3.33
689 690 0.030638 GCGTGTGCAATGAACCTTGT 59.969 50.000 0.00 0.00 42.15 3.16
690 691 2.800096 GCGTGTGCAATGAACCTTG 58.200 52.632 0.00 0.00 42.15 3.61
701 702 2.032030 ACTACAAGAAACATGCGTGTGC 60.032 45.455 13.39 8.18 38.92 4.57
702 703 3.878086 ACTACAAGAAACATGCGTGTG 57.122 42.857 13.39 1.84 38.92 3.82
703 704 4.127171 AGAACTACAAGAAACATGCGTGT 58.873 39.130 5.51 5.51 41.28 4.49
704 705 4.732285 AGAACTACAAGAAACATGCGTG 57.268 40.909 3.82 3.82 0.00 5.34
705 706 5.751243 AAAGAACTACAAGAAACATGCGT 57.249 34.783 0.00 0.00 0.00 5.24
804 806 5.237344 CGAGATAACCATTTCTGATCCAACC 59.763 44.000 0.00 0.00 0.00 3.77
813 815 4.524053 GGGGTTTCGAGATAACCATTTCT 58.476 43.478 17.12 0.00 45.51 2.52
854 856 7.041984 GGATGGGACGATCTAAACAATAAAGTC 60.042 40.741 0.00 0.00 0.00 3.01
934 967 4.530857 GGGGAGATGTGGACGCGG 62.531 72.222 12.47 0.00 0.00 6.46
936 969 2.595009 GAAGGGGGAGATGTGGACGC 62.595 65.000 0.00 0.00 0.00 5.19
948 981 0.179045 GTCGATGGATGTGAAGGGGG 60.179 60.000 0.00 0.00 0.00 5.40
962 995 1.736586 GCGTGAGATCTGGGTCGAT 59.263 57.895 0.00 0.00 0.00 3.59
1266 1306 0.965866 AGATCCGACCGAACTGAGCA 60.966 55.000 0.00 0.00 0.00 4.26
1289 1341 3.981308 CGAAAGCCCGAACCATGT 58.019 55.556 0.00 0.00 0.00 3.21
1301 1353 1.266989 GAAACCCTTCACCTGCGAAAG 59.733 52.381 0.00 0.00 0.00 2.62
1318 1391 1.134007 AGCTGATCATCCGCCATGAAA 60.134 47.619 0.00 0.00 45.06 2.69
1330 1403 4.212913 GCCTCCGCGAGCTGATCA 62.213 66.667 8.23 0.00 0.00 2.92
1524 1597 0.387239 GCCAGAACAATCAACCACGC 60.387 55.000 0.00 0.00 0.00 5.34
1595 1668 5.490139 AATCAGAATTACGCAATGTCCAG 57.510 39.130 0.00 0.00 0.00 3.86
1664 1744 7.445121 CCTATTCAGCAGATAAGTATTGGTCA 58.555 38.462 0.00 0.00 0.00 4.02
1845 2148 4.018960 AGGCAATCCAGAGTAACAATGACT 60.019 41.667 0.00 0.00 33.74 3.41
1850 2153 2.935238 GCGAGGCAATCCAGAGTAACAA 60.935 50.000 0.00 0.00 33.74 2.83
1870 2230 8.634475 AAATGTAACTTTCAAGAGAAAACAGC 57.366 30.769 0.00 0.00 42.78 4.40
2543 4018 7.222805 AGTGCTGTATCATTTATTACGTGACAG 59.777 37.037 0.00 0.00 0.00 3.51
2572 4127 6.292168 CGCTATAGTGTGGAATAGTTTTTCCG 60.292 42.308 5.07 0.00 46.85 4.30
2574 4129 6.036735 TGCGCTATAGTGTGGAATAGTTTTTC 59.963 38.462 9.73 0.00 0.00 2.29
2590 4145 6.373779 CCATTTCTGGTTTTATGCGCTATAG 58.626 40.000 9.73 0.00 37.79 1.31
2669 4224 1.399440 CTCAGCGTGATTTCACCATGG 59.601 52.381 11.19 11.19 43.66 3.66
2683 4238 9.665264 AGAAAAACTTAATTTCTTTACTCAGCG 57.335 29.630 0.00 0.00 42.85 5.18
3374 5589 6.420604 GCAGTAAACAACACACATAGCAAAAT 59.579 34.615 0.00 0.00 0.00 1.82
3462 5763 8.133627 CCACTGCATAAATCTAGAGAAAAATGG 58.866 37.037 0.00 0.00 0.00 3.16
3588 5891 9.978336 AACCCAAATGATCAAAATGGATTTAAT 57.022 25.926 20.46 3.70 32.82 1.40
3617 5920 9.456147 ACAGCAATTACTATTAAATACACCACA 57.544 29.630 0.00 0.00 0.00 4.17
3756 6296 7.715686 GGCCTAATGGAGTATTGCCTAATATAC 59.284 40.741 0.00 0.00 35.81 1.47
3775 6315 2.763039 CAAAGGGGGAAATGGCCTAAT 58.237 47.619 3.32 0.00 0.00 1.73
3792 6714 2.689471 AGCAAGTTGATCAGTGTGCAAA 59.311 40.909 21.47 0.00 34.44 3.68
3872 6795 5.491070 TGCACAGTAAGAATACTTGAGCAT 58.509 37.500 0.00 0.00 40.44 3.79
3995 7061 3.923864 AGCAAGACCACACGGCGA 61.924 61.111 16.62 0.00 34.57 5.54
4097 7163 3.866449 GCACTTCCTCGACTCCATTCTTT 60.866 47.826 0.00 0.00 0.00 2.52
4212 7278 4.148838 TGGCCTAACTAACTTGCATTTGT 58.851 39.130 3.32 0.00 0.00 2.83
4318 7384 8.836268 ATTTTATTGCAAAGCTCAAATCTTCA 57.164 26.923 1.71 0.00 0.00 3.02
4487 7554 7.496591 ACTGAAAGCACAACAAAAATCATCAAT 59.503 29.630 0.00 0.00 37.60 2.57
4495 7562 6.588373 GGAACTAACTGAAAGCACAACAAAAA 59.412 34.615 0.00 0.00 37.60 1.94
4586 7675 8.797438 CAGTACTAGAGCATAAAGGTATCATGA 58.203 37.037 0.00 0.00 0.00 3.07
4613 7702 7.704472 GCGAATCAAATACCCACAATTGATTAA 59.296 33.333 13.59 0.00 46.74 1.40
4621 7710 2.490115 GTGGCGAATCAAATACCCACAA 59.510 45.455 0.00 0.00 41.68 3.33
4645 7734 7.725251 TGAAACAGAAATACTTTGCTTCCATT 58.275 30.769 0.00 0.00 0.00 3.16
4687 7777 5.390251 CCGACATGAAAATCTCTTCACACAG 60.390 44.000 0.00 0.00 38.12 3.66
4731 7821 3.981211 AGGTGATTGACAAATGCAACAC 58.019 40.909 0.00 0.00 32.06 3.32
4770 7860 5.625721 CGTCGTCAACATCCTGATAGATAAC 59.374 44.000 0.00 0.00 0.00 1.89
4809 7899 8.363390 TGTCAATTGTTTGCCATAATTTCAGTA 58.637 29.630 5.13 0.00 32.61 2.74
4813 7903 7.119553 ACCATGTCAATTGTTTGCCATAATTTC 59.880 33.333 5.13 0.00 30.03 2.17
4820 7910 3.834489 AACCATGTCAATTGTTTGCCA 57.166 38.095 5.13 0.00 32.61 4.92
4842 7932 9.050601 CAGCAAATTTGTATACCCAAAAAGAAA 57.949 29.630 19.03 0.00 37.81 2.52
4845 7935 6.650390 AGCAGCAAATTTGTATACCCAAAAAG 59.350 34.615 19.03 0.00 37.81 2.27
4851 7941 5.102313 GTGAAGCAGCAAATTTGTATACCC 58.898 41.667 19.03 1.87 0.00 3.69
4852 7942 5.708948 TGTGAAGCAGCAAATTTGTATACC 58.291 37.500 19.03 2.57 0.00 2.73
4854 7944 9.571810 CTAAATGTGAAGCAGCAAATTTGTATA 57.428 29.630 19.03 0.00 36.60 1.47
4869 7959 3.609373 CGCATTGTTGGCTAAATGTGAAG 59.391 43.478 12.48 0.00 43.67 3.02
4927 8017 7.515643 CATCTGCACATTGGAAAAAGAAAATC 58.484 34.615 0.00 0.00 0.00 2.17
4975 8065 6.382608 CGATGTATACCTGTCATACTGGAAG 58.617 44.000 9.63 0.00 39.29 3.46
5019 8109 2.871022 CTCCAGTTGATGCTGCACTATC 59.129 50.000 3.57 0.00 35.28 2.08
5140 8230 3.686691 GCTTTGGGTGAAGAGGCTATGAT 60.687 47.826 0.00 0.00 0.00 2.45
5141 8231 2.356125 GCTTTGGGTGAAGAGGCTATGA 60.356 50.000 0.00 0.00 0.00 2.15
5142 8232 2.019984 GCTTTGGGTGAAGAGGCTATG 58.980 52.381 0.00 0.00 0.00 2.23
5143 8233 1.064389 GGCTTTGGGTGAAGAGGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
5144 8234 0.328258 GGCTTTGGGTGAAGAGGCTA 59.672 55.000 0.00 0.00 0.00 3.93
5145 8235 1.075659 GGCTTTGGGTGAAGAGGCT 59.924 57.895 0.00 0.00 0.00 4.58
5146 8236 1.979155 GGGCTTTGGGTGAAGAGGC 60.979 63.158 0.00 0.00 0.00 4.70
5147 8237 0.322906 GAGGGCTTTGGGTGAAGAGG 60.323 60.000 0.00 0.00 0.00 3.69
5148 8238 0.401738 TGAGGGCTTTGGGTGAAGAG 59.598 55.000 0.00 0.00 0.00 2.85
5149 8239 0.850100 TTGAGGGCTTTGGGTGAAGA 59.150 50.000 0.00 0.00 0.00 2.87
5150 8240 1.928868 ATTGAGGGCTTTGGGTGAAG 58.071 50.000 0.00 0.00 0.00 3.02
5151 8241 3.756082 ATATTGAGGGCTTTGGGTGAA 57.244 42.857 0.00 0.00 0.00 3.18
5152 8242 3.433031 CGTATATTGAGGGCTTTGGGTGA 60.433 47.826 0.00 0.00 0.00 4.02
5153 8243 2.878406 CGTATATTGAGGGCTTTGGGTG 59.122 50.000 0.00 0.00 0.00 4.61
5154 8244 2.158667 CCGTATATTGAGGGCTTTGGGT 60.159 50.000 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.