Multiple sequence alignment - TraesCS3A01G234400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G234400 chr3A 100.000 3908 0 0 1 3908 437861504 437865411 0.000000e+00 7217
1 TraesCS3A01G234400 chr3A 91.584 1010 64 15 2261 3262 437636017 437637013 0.000000e+00 1375
2 TraesCS3A01G234400 chr3A 100.000 350 0 0 4257 4606 437865760 437866109 0.000000e+00 647
3 TraesCS3A01G234400 chr3A 84.557 395 39 4 688 1062 437619910 437620302 5.630000e-99 372
4 TraesCS3A01G234400 chr3A 89.420 293 24 4 3614 3901 437643864 437644154 3.390000e-96 363
5 TraesCS3A01G234400 chr3A 90.041 241 24 0 3288 3528 437643440 437643680 3.460000e-81 313
6 TraesCS3A01G234400 chr3A 88.991 218 24 0 457 674 634575436 634575219 2.110000e-68 270
7 TraesCS3A01G234400 chr3A 90.116 172 17 0 1050 1221 437635418 437635589 1.670000e-54 224
8 TraesCS3A01G234400 chr3A 84.305 223 12 8 4288 4507 437644580 437644782 3.640000e-46 196
9 TraesCS3A01G234400 chr3A 84.397 141 18 3 33 172 711149162 711149025 8.040000e-28 135
10 TraesCS3A01G234400 chr3A 97.059 68 2 0 4539 4606 437644784 437644851 1.050000e-21 115
11 TraesCS3A01G234400 chr3D 90.433 1662 112 19 2257 3908 324386969 324388593 0.000000e+00 2145
12 TraesCS3A01G234400 chr3D 87.862 552 49 12 682 1221 324386004 324386549 2.340000e-177 632
13 TraesCS3A01G234400 chr3D 91.292 356 23 5 4257 4606 324388624 324388977 3.220000e-131 479
14 TraesCS3A01G234400 chr3D 93.878 98 6 0 1963 2060 137515210 137515113 1.030000e-31 148
15 TraesCS3A01G234400 chr3B 88.632 1645 127 23 2256 3883 424792027 424790426 0.000000e+00 1947
16 TraesCS3A01G234400 chr3B 88.870 575 32 13 670 1221 424793012 424792447 0.000000e+00 678
17 TraesCS3A01G234400 chr3B 91.319 288 18 4 4324 4606 424789938 424789653 2.010000e-103 387
18 TraesCS3A01G234400 chr3B 93.137 102 6 1 1958 2059 791898834 791898934 1.030000e-31 148
19 TraesCS3A01G234400 chr7D 84.152 1527 164 45 2275 3770 562122427 562123906 0.000000e+00 1408
20 TraesCS3A01G234400 chr7D 84.018 438 65 5 897 1333 562121402 562121835 2.560000e-112 416
21 TraesCS3A01G234400 chr7A 83.595 1530 167 46 2275 3770 647296987 647298466 0.000000e+00 1358
22 TraesCS3A01G234400 chr7A 82.367 431 72 4 897 1326 647295819 647296246 5.630000e-99 372
23 TraesCS3A01G234400 chrUn 96.263 669 23 2 1 668 319397 320064 0.000000e+00 1096
24 TraesCS3A01G234400 chr7B 89.722 827 73 9 2454 3273 611720347 611721168 0.000000e+00 1046
25 TraesCS3A01G234400 chr7B 82.444 450 58 15 3327 3770 611721195 611721629 1.560000e-99 374
26 TraesCS3A01G234400 chr7B 99.482 193 0 1 2053 2244 344312409 344312601 2.640000e-92 350
27 TraesCS3A01G234400 chr7B 98.974 195 1 1 2051 2245 642366652 642366459 9.480000e-92 348
28 TraesCS3A01G234400 chr7B 99.462 186 1 0 2058 2243 88636975 88637160 5.710000e-89 339
29 TraesCS3A01G234400 chr7B 82.796 186 29 2 3 187 60454675 60454492 3.690000e-36 163
30 TraesCS3A01G234400 chr7B 94.949 99 3 2 1963 2060 153939438 153939341 2.220000e-33 154
31 TraesCS3A01G234400 chr5A 94.056 673 38 2 3 673 624718196 624717524 0.000000e+00 1020
32 TraesCS3A01G234400 chr5A 81.959 194 34 1 485 677 538959888 538960081 3.690000e-36 163
33 TraesCS3A01G234400 chr5B 100.000 190 0 0 2055 2244 458934381 458934570 7.330000e-93 351
34 TraesCS3A01G234400 chr2A 100.000 190 0 0 2056 2245 404938885 404938696 7.330000e-93 351
35 TraesCS3A01G234400 chr2A 88.426 216 25 0 457 672 655287109 655287324 1.270000e-65 261
36 TraesCS3A01G234400 chr2A 93.069 101 6 1 1952 2052 535802040 535802139 3.710000e-31 147
37 TraesCS3A01G234400 chr2A 94.624 93 4 1 1961 2052 661154291 661154383 4.800000e-30 143
38 TraesCS3A01G234400 chr1A 100.000 190 0 0 2058 2247 105904711 105904900 7.330000e-93 351
39 TraesCS3A01G234400 chr2B 99.479 192 1 0 2054 2245 346561000 346561191 2.640000e-92 350
40 TraesCS3A01G234400 chr2B 98.485 198 1 2 2049 2244 763841278 763841081 9.480000e-92 348
41 TraesCS3A01G234400 chr6A 100.000 186 0 0 2059 2244 178446480 178446665 1.230000e-90 344
42 TraesCS3A01G234400 chr4A 84.422 199 31 0 475 673 494036141 494035943 3.640000e-46 196
43 TraesCS3A01G234400 chr4A 93.878 98 6 0 1963 2060 400405135 400405232 1.030000e-31 148
44 TraesCS3A01G234400 chr1B 80.543 221 37 5 459 677 328647888 328647672 1.030000e-36 165
45 TraesCS3A01G234400 chr1B 80.180 222 39 5 454 673 65692783 65692565 1.330000e-35 161
46 TraesCS3A01G234400 chr5D 79.149 235 46 3 442 675 556443817 556443585 4.770000e-35 159
47 TraesCS3A01G234400 chr6D 97.753 89 2 0 1964 2052 413410037 413410125 2.220000e-33 154
48 TraesCS3A01G234400 chr6D 95.745 94 3 1 1967 2060 413410125 413410033 2.870000e-32 150
49 TraesCS3A01G234400 chr2D 97.753 89 2 0 1964 2052 506785631 506785543 2.220000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G234400 chr3A 437861504 437866109 4605 False 3932.000000 7217 100.000000 1 4606 2 chr3A.!!$F4 4605
1 TraesCS3A01G234400 chr3A 437635418 437637013 1595 False 799.500000 1375 90.850000 1050 3262 2 chr3A.!!$F2 2212
2 TraesCS3A01G234400 chr3A 437643440 437644851 1411 False 246.750000 363 90.206250 3288 4606 4 chr3A.!!$F3 1318
3 TraesCS3A01G234400 chr3D 324386004 324388977 2973 False 1085.333333 2145 89.862333 682 4606 3 chr3D.!!$F1 3924
4 TraesCS3A01G234400 chr3B 424789653 424793012 3359 True 1004.000000 1947 89.607000 670 4606 3 chr3B.!!$R1 3936
5 TraesCS3A01G234400 chr7D 562121402 562123906 2504 False 912.000000 1408 84.085000 897 3770 2 chr7D.!!$F1 2873
6 TraesCS3A01G234400 chr7A 647295819 647298466 2647 False 865.000000 1358 82.981000 897 3770 2 chr7A.!!$F1 2873
7 TraesCS3A01G234400 chrUn 319397 320064 667 False 1096.000000 1096 96.263000 1 668 1 chrUn.!!$F1 667
8 TraesCS3A01G234400 chr7B 611720347 611721629 1282 False 710.000000 1046 86.083000 2454 3770 2 chr7B.!!$F3 1316
9 TraesCS3A01G234400 chr5A 624717524 624718196 672 True 1020.000000 1020 94.056000 3 673 1 chr5A.!!$R1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
770 791 0.391528 TACCCCTAAAAGCCGAACGC 60.392 55.0 0.00 0.00 37.98 4.84 F
1351 1403 0.034186 CCCATGCACCTTGAAGGCTA 60.034 55.0 11.96 0.00 39.63 3.93 F
2212 2467 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.00 0.00 44.78 4.85 F
2225 2480 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.0 0.00 0.00 38.40 4.00 F
2291 2547 0.244450 CGTTTCATTGTGGCATGCCT 59.756 50.0 35.53 14.65 36.94 4.75 F
3324 3611 1.533625 TGGAATGCCTTGTCGAAAGG 58.466 50.0 17.15 17.15 40.39 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2206 2461 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35 R
2271 2526 0.243365 GGCATGCCACAATGAAACGA 59.757 50.000 32.08 0.00 35.81 3.85 R
3304 3591 1.885887 CCTTTCGACAAGGCATTCCAA 59.114 47.619 11.70 0.00 33.74 3.53 R
3444 3732 2.662596 CGCCTCCAGCTACACCAA 59.337 61.111 0.00 0.00 40.39 3.67 R
3602 3898 2.846371 CCAACTGAGGCTGCACTAC 58.154 57.895 0.50 0.00 0.00 2.73 R
4425 4934 1.086696 AGATGGATTTTGGTGTCGCG 58.913 50.000 0.00 0.00 0.00 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 1.268992 CGAGGTAACCATCCCCACCA 61.269 60.000 0.00 0.00 33.27 4.17
97 99 4.100084 CACCAGCTCGGCCATGGA 62.100 66.667 18.40 0.00 39.03 3.41
105 107 0.831288 CTCGGCCATGGAGAGAGGAT 60.831 60.000 24.94 0.00 34.13 3.24
220 223 7.540299 AGGAGAAGAGTCACTTTTTATAGTCG 58.460 38.462 0.00 0.00 39.13 4.18
377 380 1.336440 CAACAAATGGACCAACAGCGA 59.664 47.619 0.00 0.00 0.00 4.93
455 458 0.741915 GAAAGGAACAACCACGCCAA 59.258 50.000 0.00 0.00 42.04 4.52
606 609 2.167487 GCCAGAACCAAAACTCACCAAA 59.833 45.455 0.00 0.00 0.00 3.28
638 641 4.643334 TCATCCAAATGGCTGAATCTCAAG 59.357 41.667 3.59 0.00 37.39 3.02
729 734 2.288579 ACTGTTTAGGTGATCGCGTTCA 60.289 45.455 15.58 15.58 0.00 3.18
732 737 1.835121 TTAGGTGATCGCGTTCATCG 58.165 50.000 21.63 0.00 43.12 3.84
770 791 0.391528 TACCCCTAAAAGCCGAACGC 60.392 55.000 0.00 0.00 37.98 4.84
787 808 4.672024 CGAACGCTCATCAGTTAGTACAGT 60.672 45.833 0.00 0.00 0.00 3.55
788 809 4.785511 ACGCTCATCAGTTAGTACAGTT 57.214 40.909 0.00 0.00 0.00 3.16
789 810 4.734917 ACGCTCATCAGTTAGTACAGTTC 58.265 43.478 0.00 0.00 0.00 3.01
790 811 4.217767 ACGCTCATCAGTTAGTACAGTTCA 59.782 41.667 0.00 0.00 0.00 3.18
791 812 5.105716 ACGCTCATCAGTTAGTACAGTTCAT 60.106 40.000 0.00 0.00 0.00 2.57
792 813 5.807520 CGCTCATCAGTTAGTACAGTTCATT 59.192 40.000 0.00 0.00 0.00 2.57
864 895 4.301027 CCTATCCACCGGAGCCGC 62.301 72.222 9.46 0.00 34.05 6.53
927 958 3.055021 GGGACAAACAAACAAAGGGGAAA 60.055 43.478 0.00 0.00 0.00 3.13
983 1014 6.153680 AGGAATCTTGTACAGAGTTCGATTCT 59.846 38.462 18.45 0.00 36.90 2.40
992 1023 2.165301 GTTCGATTCTCGGCGGTGG 61.165 63.158 7.21 0.00 40.88 4.61
1136 1167 1.920325 CCTTCTCAGGTGCCCTCCA 60.920 63.158 0.00 0.00 35.06 3.86
1137 1168 1.492133 CCTTCTCAGGTGCCCTCCAA 61.492 60.000 0.00 0.00 35.06 3.53
1138 1169 0.622665 CTTCTCAGGTGCCCTCCAAT 59.377 55.000 0.00 0.00 0.00 3.16
1150 1183 1.492599 CCCTCCAATTCTCTTCCTCCC 59.507 57.143 0.00 0.00 0.00 4.30
1152 1185 2.200081 CTCCAATTCTCTTCCTCCCCA 58.800 52.381 0.00 0.00 0.00 4.96
1195 1228 0.253610 TCCGCGGGAAATTGGTGTAT 59.746 50.000 27.83 0.00 0.00 2.29
1196 1229 0.380378 CCGCGGGAAATTGGTGTATG 59.620 55.000 20.10 0.00 0.00 2.39
1221 1254 3.935203 AGTAGAACTGCGGATTTGTGATG 59.065 43.478 0.00 0.00 0.00 3.07
1242 1276 1.659098 GCAACAGAGACGGGTATTTCG 59.341 52.381 0.00 0.00 0.00 3.46
1253 1287 0.160182 GGTATTTCGCGGCGAATACG 59.840 55.000 34.65 4.32 45.28 3.06
1272 1306 2.965147 CTGCAACAGCGGCGCTTAA 61.965 57.895 34.51 14.66 36.40 1.85
1277 1311 0.168128 AACAGCGGCGCTTAATTGTC 59.832 50.000 34.51 0.00 36.40 3.18
1278 1312 1.296867 CAGCGGCGCTTAATTGTCG 60.297 57.895 34.51 14.85 36.40 4.35
1286 1320 3.059800 GGCGCTTAATTGTCGGATAGTTC 60.060 47.826 7.64 0.00 0.00 3.01
1288 1322 3.795101 CGCTTAATTGTCGGATAGTTCGT 59.205 43.478 0.00 0.00 0.00 3.85
1293 1327 0.604073 TGTCGGATAGTTCGTTGGCA 59.396 50.000 0.00 0.00 0.00 4.92
1296 1330 1.546923 TCGGATAGTTCGTTGGCAGAA 59.453 47.619 0.00 0.00 0.00 3.02
1310 1344 3.058160 AGAACAGCATGCCCGCAC 61.058 61.111 15.66 2.68 42.53 5.34
1326 1378 0.654472 GCACGCTGTTTGACGAACTG 60.654 55.000 7.10 7.50 39.08 3.16
1332 1384 2.974165 CTGTTTGACGAACTGCTCAAC 58.026 47.619 7.10 0.00 39.08 3.18
1333 1385 1.668751 TGTTTGACGAACTGCTCAACC 59.331 47.619 7.10 0.00 39.08 3.77
1334 1386 1.002792 GTTTGACGAACTGCTCAACCC 60.003 52.381 0.00 0.00 35.31 4.11
1335 1387 0.179234 TTGACGAACTGCTCAACCCA 59.821 50.000 0.00 0.00 0.00 4.51
1336 1388 0.396435 TGACGAACTGCTCAACCCAT 59.604 50.000 0.00 0.00 0.00 4.00
1337 1389 0.798776 GACGAACTGCTCAACCCATG 59.201 55.000 0.00 0.00 0.00 3.66
1338 1390 1.237285 ACGAACTGCTCAACCCATGC 61.237 55.000 0.00 0.00 0.00 4.06
1339 1391 1.236616 CGAACTGCTCAACCCATGCA 61.237 55.000 0.00 0.00 35.30 3.96
1340 1392 0.242017 GAACTGCTCAACCCATGCAC 59.758 55.000 0.00 0.00 32.91 4.57
1341 1393 1.181098 AACTGCTCAACCCATGCACC 61.181 55.000 0.00 0.00 32.91 5.01
1342 1394 1.303888 CTGCTCAACCCATGCACCT 60.304 57.895 0.00 0.00 32.91 4.00
1343 1395 0.896940 CTGCTCAACCCATGCACCTT 60.897 55.000 0.00 0.00 32.91 3.50
1344 1396 1.180456 TGCTCAACCCATGCACCTTG 61.180 55.000 0.00 0.00 0.00 3.61
1345 1397 0.895100 GCTCAACCCATGCACCTTGA 60.895 55.000 0.00 0.00 0.00 3.02
1346 1398 1.619654 CTCAACCCATGCACCTTGAA 58.380 50.000 0.00 0.00 0.00 2.69
1347 1399 1.542915 CTCAACCCATGCACCTTGAAG 59.457 52.381 0.00 0.00 0.00 3.02
1348 1400 0.604578 CAACCCATGCACCTTGAAGG 59.395 55.000 10.24 10.24 42.49 3.46
1349 1401 1.187567 AACCCATGCACCTTGAAGGC 61.188 55.000 11.96 0.00 39.63 4.35
1350 1402 1.304713 CCCATGCACCTTGAAGGCT 60.305 57.895 11.96 0.00 39.63 4.58
1351 1403 0.034186 CCCATGCACCTTGAAGGCTA 60.034 55.000 11.96 0.00 39.63 3.93
1352 1404 1.098050 CCATGCACCTTGAAGGCTAC 58.902 55.000 11.96 1.22 39.63 3.58
1353 1405 1.098050 CATGCACCTTGAAGGCTACC 58.902 55.000 11.96 0.00 39.63 3.18
1354 1406 0.392998 ATGCACCTTGAAGGCTACCG 60.393 55.000 11.96 0.00 39.63 4.02
1355 1407 1.295423 GCACCTTGAAGGCTACCGA 59.705 57.895 11.96 0.00 39.63 4.69
1356 1408 0.741221 GCACCTTGAAGGCTACCGAG 60.741 60.000 11.96 0.00 39.63 4.63
1357 1409 0.108138 CACCTTGAAGGCTACCGAGG 60.108 60.000 11.96 17.13 39.63 4.63
1358 1410 1.265454 ACCTTGAAGGCTACCGAGGG 61.265 60.000 20.75 8.26 39.63 4.30
1359 1411 1.522569 CTTGAAGGCTACCGAGGGG 59.477 63.158 0.00 0.00 40.11 4.79
1360 1412 2.595009 CTTGAAGGCTACCGAGGGGC 62.595 65.000 0.00 0.00 36.48 5.80
1361 1413 3.081409 GAAGGCTACCGAGGGGCA 61.081 66.667 10.41 0.00 36.48 5.36
1362 1414 2.366972 AAGGCTACCGAGGGGCAT 60.367 61.111 10.41 2.14 36.48 4.40
1363 1415 1.984288 GAAGGCTACCGAGGGGCATT 61.984 60.000 8.42 8.42 36.48 3.56
1364 1416 1.984288 AAGGCTACCGAGGGGCATTC 61.984 60.000 10.41 0.00 36.48 2.67
1365 1417 2.111251 GCTACCGAGGGGCATTCC 59.889 66.667 0.00 0.00 36.48 3.01
1366 1418 2.421739 CTACCGAGGGGCATTCCG 59.578 66.667 0.00 0.00 36.48 4.30
1367 1419 2.364579 TACCGAGGGGCATTCCGT 60.365 61.111 0.00 0.00 36.48 4.69
1368 1420 1.968050 CTACCGAGGGGCATTCCGTT 61.968 60.000 0.00 0.00 36.48 4.44
1369 1421 1.963464 TACCGAGGGGCATTCCGTTC 61.963 60.000 0.00 0.00 36.48 3.95
1370 1422 2.267642 CGAGGGGCATTCCGTTCA 59.732 61.111 0.00 0.00 36.01 3.18
1371 1423 1.815421 CGAGGGGCATTCCGTTCAG 60.815 63.158 0.00 0.00 36.01 3.02
1372 1424 1.299976 GAGGGGCATTCCGTTCAGT 59.700 57.895 0.00 0.00 36.01 3.41
1373 1425 1.002134 AGGGGCATTCCGTTCAGTG 60.002 57.895 0.00 0.00 36.01 3.66
1374 1426 1.002624 GGGGCATTCCGTTCAGTGA 60.003 57.895 0.00 0.00 36.01 3.41
1375 1427 0.394352 GGGGCATTCCGTTCAGTGAT 60.394 55.000 0.00 0.00 36.01 3.06
1376 1428 0.734889 GGGCATTCCGTTCAGTGATG 59.265 55.000 0.00 0.00 0.00 3.07
1377 1429 1.678728 GGGCATTCCGTTCAGTGATGA 60.679 52.381 0.00 0.00 0.00 2.92
1378 1430 1.398390 GGCATTCCGTTCAGTGATGAC 59.602 52.381 0.00 0.00 0.00 3.06
1379 1431 2.350522 GCATTCCGTTCAGTGATGACT 58.649 47.619 0.00 0.00 0.00 3.41
1380 1432 3.521560 GCATTCCGTTCAGTGATGACTA 58.478 45.455 0.00 0.00 0.00 2.59
1381 1433 4.122776 GCATTCCGTTCAGTGATGACTAT 58.877 43.478 0.00 0.00 0.00 2.12
1382 1434 4.210120 GCATTCCGTTCAGTGATGACTATC 59.790 45.833 0.00 0.00 0.00 2.08
1383 1435 3.692791 TCCGTTCAGTGATGACTATCG 57.307 47.619 0.00 0.00 36.04 2.92
1384 1436 2.357952 TCCGTTCAGTGATGACTATCGG 59.642 50.000 12.87 12.87 38.80 4.18
1385 1437 2.099263 CCGTTCAGTGATGACTATCGGT 59.901 50.000 11.55 0.00 35.75 4.69
1386 1438 3.428999 CCGTTCAGTGATGACTATCGGTT 60.429 47.826 11.55 0.00 35.75 4.44
1387 1439 3.547868 CGTTCAGTGATGACTATCGGTTG 59.452 47.826 0.00 0.00 36.04 3.77
1388 1440 4.495422 GTTCAGTGATGACTATCGGTTGT 58.505 43.478 0.00 0.00 36.04 3.32
1389 1441 4.110036 TCAGTGATGACTATCGGTTGTG 57.890 45.455 0.00 0.00 36.04 3.33
1390 1442 3.119137 TCAGTGATGACTATCGGTTGTGG 60.119 47.826 0.00 0.00 36.04 4.17
1391 1443 2.832129 AGTGATGACTATCGGTTGTGGT 59.168 45.455 0.00 0.00 36.04 4.16
1392 1444 3.260884 AGTGATGACTATCGGTTGTGGTT 59.739 43.478 0.00 0.00 36.04 3.67
1393 1445 4.000988 GTGATGACTATCGGTTGTGGTTT 58.999 43.478 0.00 0.00 36.04 3.27
1394 1446 4.000325 TGATGACTATCGGTTGTGGTTTG 59.000 43.478 0.00 0.00 36.04 2.93
1395 1447 2.773487 TGACTATCGGTTGTGGTTTGG 58.227 47.619 0.00 0.00 0.00 3.28
1396 1448 1.467342 GACTATCGGTTGTGGTTTGGC 59.533 52.381 0.00 0.00 0.00 4.52
1397 1449 0.446222 CTATCGGTTGTGGTTTGGCG 59.554 55.000 0.00 0.00 0.00 5.69
1398 1450 1.579084 TATCGGTTGTGGTTTGGCGC 61.579 55.000 0.00 0.00 0.00 6.53
1399 1451 4.973360 CGGTTGTGGTTTGGCGCG 62.973 66.667 0.00 0.00 0.00 6.86
1417 1469 4.799473 CGCGAATGCCACAGCGTG 62.799 66.667 0.00 2.27 46.48 5.34
1418 1470 3.726517 GCGAATGCCACAGCGTGT 61.727 61.111 7.68 0.00 44.31 4.49
1420 1472 2.606961 CGAATGCCACAGCGTGTGT 61.607 57.895 14.25 2.64 46.45 3.72
1427 1479 4.063529 ACAGCGTGTGTGGAATGG 57.936 55.556 0.00 0.00 38.28 3.16
1428 1480 1.600636 ACAGCGTGTGTGGAATGGG 60.601 57.895 0.00 0.00 38.28 4.00
1429 1481 2.672996 AGCGTGTGTGGAATGGGC 60.673 61.111 0.00 0.00 0.00 5.36
1430 1482 2.983030 GCGTGTGTGGAATGGGCA 60.983 61.111 0.00 0.00 0.00 5.36
1431 1483 2.342650 GCGTGTGTGGAATGGGCAT 61.343 57.895 0.00 0.00 0.00 4.40
1432 1484 1.876497 GCGTGTGTGGAATGGGCATT 61.876 55.000 0.00 0.00 0.00 3.56
1433 1485 0.109179 CGTGTGTGGAATGGGCATTG 60.109 55.000 0.00 0.00 0.00 2.82
1434 1486 0.390209 GTGTGTGGAATGGGCATTGC 60.390 55.000 0.00 0.00 39.25 3.56
1435 1487 1.153784 GTGTGGAATGGGCATTGCG 60.154 57.895 1.91 0.00 41.31 4.85
1436 1488 2.349672 TGTGGAATGGGCATTGCGG 61.350 57.895 1.91 0.00 41.31 5.69
1437 1489 2.051518 GTGGAATGGGCATTGCGGA 61.052 57.895 1.91 0.00 41.31 5.54
1451 1503 2.584391 GCGGATACCCTGCCCTAGG 61.584 68.421 0.06 0.06 46.88 3.02
1471 1529 2.891580 GGGGATAATCTCGCACTACTGA 59.108 50.000 0.00 0.00 38.54 3.41
1474 1532 4.541779 GGATAATCTCGCACTACTGACTG 58.458 47.826 0.00 0.00 0.00 3.51
1485 1668 2.093288 ACTACTGACTGGCATCATGGTG 60.093 50.000 0.10 0.10 0.00 4.17
1492 1683 1.614903 CTGGCATCATGGTGTGTGTTT 59.385 47.619 8.00 0.00 0.00 2.83
1496 1687 3.255642 GGCATCATGGTGTGTGTTTAGTT 59.744 43.478 8.00 0.00 0.00 2.24
1501 1692 6.371809 TCATGGTGTGTGTTTAGTTTTCTC 57.628 37.500 0.00 0.00 0.00 2.87
1502 1693 5.883115 TCATGGTGTGTGTTTAGTTTTCTCA 59.117 36.000 0.00 0.00 0.00 3.27
1506 1697 6.314400 TGGTGTGTGTTTAGTTTTCTCAGTAC 59.686 38.462 0.00 0.00 0.00 2.73
1509 1700 8.114905 GTGTGTGTTTAGTTTTCTCAGTACTTC 58.885 37.037 0.00 0.00 0.00 3.01
1518 1709 2.366533 TCTCAGTACTTCGGAGCGAAT 58.633 47.619 0.00 0.00 44.85 3.34
1519 1710 2.097629 TCTCAGTACTTCGGAGCGAATG 59.902 50.000 0.00 0.00 44.85 2.67
1521 1712 1.135083 CAGTACTTCGGAGCGAATGGT 60.135 52.381 0.00 0.00 44.85 3.55
1536 1727 6.533730 AGCGAATGGTCCAGATTAATATTGA 58.466 36.000 0.00 0.00 0.00 2.57
1538 1729 6.204688 GCGAATGGTCCAGATTAATATTGACA 59.795 38.462 14.20 3.79 0.00 3.58
1539 1730 7.255104 GCGAATGGTCCAGATTAATATTGACAA 60.255 37.037 14.20 5.46 0.00 3.18
1540 1731 8.620416 CGAATGGTCCAGATTAATATTGACAAA 58.380 33.333 14.20 4.65 0.00 2.83
1542 1733 9.479549 AATGGTCCAGATTAATATTGACAAAGT 57.520 29.630 14.20 1.58 0.00 2.66
1543 1734 8.279970 TGGTCCAGATTAATATTGACAAAGTG 57.720 34.615 14.20 0.00 0.00 3.16
1550 1741 9.444600 AGATTAATATTGACAAAGTGTAACCGT 57.555 29.630 0.00 0.00 37.80 4.83
1551 1742 9.485591 GATTAATATTGACAAAGTGTAACCGTG 57.514 33.333 0.00 0.00 37.80 4.94
1552 1743 8.604640 TTAATATTGACAAAGTGTAACCGTGA 57.395 30.769 0.00 0.00 37.80 4.35
1553 1744 6.721571 ATATTGACAAAGTGTAACCGTGAG 57.278 37.500 0.00 0.00 37.80 3.51
1555 1746 4.652421 TGACAAAGTGTAACCGTGAGTA 57.348 40.909 0.00 0.00 37.80 2.59
1556 1747 4.613944 TGACAAAGTGTAACCGTGAGTAG 58.386 43.478 0.00 0.00 37.80 2.57
1558 1749 3.243975 ACAAAGTGTAACCGTGAGTAGGG 60.244 47.826 0.00 0.00 37.80 3.53
1569 1800 1.207329 GTGAGTAGGGGGCTGTTGTAG 59.793 57.143 0.00 0.00 0.00 2.74
1579 1810 3.431766 GGGGCTGTTGTAGTTATCGATGT 60.432 47.826 8.54 0.00 0.00 3.06
1586 1817 7.438459 GCTGTTGTAGTTATCGATGTCCTAAAT 59.562 37.037 8.54 0.00 0.00 1.40
1587 1818 9.314321 CTGTTGTAGTTATCGATGTCCTAAATT 57.686 33.333 8.54 0.00 0.00 1.82
1588 1819 9.661563 TGTTGTAGTTATCGATGTCCTAAATTT 57.338 29.630 8.54 0.00 0.00 1.82
1589 1820 9.916397 GTTGTAGTTATCGATGTCCTAAATTTG 57.084 33.333 8.54 0.00 0.00 2.32
1590 1821 9.661563 TTGTAGTTATCGATGTCCTAAATTTGT 57.338 29.630 8.54 0.00 0.00 2.83
1603 1839 8.081633 TGTCCTAAATTTGTTTTGCAGTGATAG 58.918 33.333 0.00 0.00 0.00 2.08
1611 1847 6.116711 TGTTTTGCAGTGATAGGTAGGTTA 57.883 37.500 0.00 0.00 0.00 2.85
1632 1868 7.281774 AGGTTAGAATGTGTTGATAGCAGATTG 59.718 37.037 0.00 0.00 31.32 2.67
1678 1923 7.466746 AACACAATACAAATATCCTGCTTGT 57.533 32.000 0.00 0.00 37.13 3.16
1755 2002 7.440255 TCTGTGTAGTTTCTTTGTAGCTTAACC 59.560 37.037 0.00 0.00 0.00 2.85
1757 2004 4.744136 AGTTTCTTTGTAGCTTAACCGC 57.256 40.909 0.00 0.00 0.00 5.68
1767 2014 5.239351 TGTAGCTTAACCGCTGTTGAATTA 58.761 37.500 3.49 0.00 41.12 1.40
1770 2017 4.941263 AGCTTAACCGCTGTTGAATTATGA 59.059 37.500 3.49 0.00 39.16 2.15
1805 2052 4.510711 CGGATGAGATGAGACCAATTTCAG 59.489 45.833 0.00 0.00 0.00 3.02
1806 2053 5.435291 GGATGAGATGAGACCAATTTCAGT 58.565 41.667 0.00 0.00 0.00 3.41
1820 2067 9.750125 GACCAATTTCAGTTTCTCACTTAATTT 57.250 29.630 0.00 0.00 30.92 1.82
1843 2090 6.385649 TTTGTCTGTGTTTGTATTCCCTTC 57.614 37.500 0.00 0.00 0.00 3.46
1845 2092 5.690865 TGTCTGTGTTTGTATTCCCTTCTT 58.309 37.500 0.00 0.00 0.00 2.52
1858 2105 5.623956 TTCCCTTCTTCACAAGTTACTGA 57.376 39.130 0.00 0.00 0.00 3.41
1871 2118 6.591448 CACAAGTTACTGAGATTGCATGTCTA 59.409 38.462 2.43 0.00 0.00 2.59
1872 2119 6.591834 ACAAGTTACTGAGATTGCATGTCTAC 59.408 38.462 2.43 0.00 0.00 2.59
1893 2140 2.094894 CGCTCAGATGTGCTTAACTTGG 59.905 50.000 5.46 0.00 32.84 3.61
1899 2154 6.649155 TCAGATGTGCTTAACTTGGCTTATA 58.351 36.000 0.00 0.00 0.00 0.98
1902 2157 7.227314 CAGATGTGCTTAACTTGGCTTATATGA 59.773 37.037 0.00 0.00 0.00 2.15
1928 2183 6.016276 ACAAAACCATGAAACCAGTCAGTATC 60.016 38.462 0.00 0.00 0.00 2.24
1929 2184 4.908601 ACCATGAAACCAGTCAGTATCA 57.091 40.909 0.00 0.00 0.00 2.15
1944 2199 9.838339 CAGTCAGTATCAGTAATAAAAGGGAAT 57.162 33.333 0.00 0.00 0.00 3.01
1988 2243 6.893020 ATACTCCCTCTGTTCCAAATTACT 57.107 37.500 0.00 0.00 0.00 2.24
1989 2244 5.584551 ACTCCCTCTGTTCCAAATTACTT 57.415 39.130 0.00 0.00 0.00 2.24
1990 2245 5.316987 ACTCCCTCTGTTCCAAATTACTTG 58.683 41.667 0.00 0.00 34.52 3.16
1991 2246 5.163088 ACTCCCTCTGTTCCAAATTACTTGT 60.163 40.000 0.00 0.00 32.65 3.16
1992 2247 5.313712 TCCCTCTGTTCCAAATTACTTGTC 58.686 41.667 0.00 0.00 32.65 3.18
1993 2248 5.070001 CCCTCTGTTCCAAATTACTTGTCA 58.930 41.667 0.00 0.00 32.65 3.58
1994 2249 5.711976 CCCTCTGTTCCAAATTACTTGTCAT 59.288 40.000 0.00 0.00 32.65 3.06
1995 2250 6.349611 CCCTCTGTTCCAAATTACTTGTCATG 60.350 42.308 0.00 0.00 32.65 3.07
1996 2251 6.349611 CCTCTGTTCCAAATTACTTGTCATGG 60.350 42.308 0.00 0.00 32.65 3.66
1997 2252 6.068010 TCTGTTCCAAATTACTTGTCATGGT 58.932 36.000 0.00 0.00 32.65 3.55
1998 2253 6.549364 TCTGTTCCAAATTACTTGTCATGGTT 59.451 34.615 0.00 0.00 32.65 3.67
1999 2254 7.069331 TCTGTTCCAAATTACTTGTCATGGTTT 59.931 33.333 0.00 0.00 32.65 3.27
2000 2255 7.560368 TGTTCCAAATTACTTGTCATGGTTTT 58.440 30.769 0.00 0.00 32.65 2.43
2001 2256 8.696374 TGTTCCAAATTACTTGTCATGGTTTTA 58.304 29.630 0.00 0.00 32.65 1.52
2002 2257 9.191995 GTTCCAAATTACTTGTCATGGTTTTAG 57.808 33.333 0.00 0.00 32.65 1.85
2003 2258 8.472007 TCCAAATTACTTGTCATGGTTTTAGT 57.528 30.769 0.00 0.00 32.65 2.24
2004 2259 8.919145 TCCAAATTACTTGTCATGGTTTTAGTT 58.081 29.630 0.00 0.00 32.65 2.24
2005 2260 9.191995 CCAAATTACTTGTCATGGTTTTAGTTC 57.808 33.333 0.00 0.00 32.65 3.01
2006 2261 9.743057 CAAATTACTTGTCATGGTTTTAGTTCA 57.257 29.630 0.00 0.00 0.00 3.18
2012 2267 9.097257 ACTTGTCATGGTTTTAGTTCAAATTTG 57.903 29.630 12.15 12.15 0.00 2.32
2013 2268 9.311916 CTTGTCATGGTTTTAGTTCAAATTTGA 57.688 29.630 16.91 16.91 34.92 2.69
2014 2269 9.658799 TTGTCATGGTTTTAGTTCAAATTTGAA 57.341 25.926 26.01 26.01 44.31 2.69
2027 2282 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
2028 2283 6.853720 TCAAATTTGAACTAAAACCACGACA 58.146 32.000 18.45 0.00 33.55 4.35
2029 2284 7.313646 TCAAATTTGAACTAAAACCACGACAA 58.686 30.769 18.45 0.00 33.55 3.18
2030 2285 7.486551 TCAAATTTGAACTAAAACCACGACAAG 59.513 33.333 18.45 0.00 33.55 3.16
2031 2286 5.883503 TTTGAACTAAAACCACGACAAGT 57.116 34.783 0.00 0.00 0.00 3.16
2032 2287 6.981762 TTTGAACTAAAACCACGACAAGTA 57.018 33.333 0.00 0.00 0.00 2.24
2033 2288 6.981762 TTGAACTAAAACCACGACAAGTAA 57.018 33.333 0.00 0.00 0.00 2.24
2034 2289 7.556733 TTGAACTAAAACCACGACAAGTAAT 57.443 32.000 0.00 0.00 0.00 1.89
2035 2290 7.556733 TGAACTAAAACCACGACAAGTAATT 57.443 32.000 0.00 0.00 0.00 1.40
2036 2291 7.987649 TGAACTAAAACCACGACAAGTAATTT 58.012 30.769 0.00 0.00 0.00 1.82
2037 2292 7.911205 TGAACTAAAACCACGACAAGTAATTTG 59.089 33.333 0.00 0.00 42.68 2.32
2038 2293 6.731164 ACTAAAACCACGACAAGTAATTTGG 58.269 36.000 0.00 0.00 41.25 3.28
2039 2294 5.838531 AAAACCACGACAAGTAATTTGGA 57.161 34.783 0.00 0.00 41.25 3.53
2040 2295 5.838531 AAACCACGACAAGTAATTTGGAA 57.161 34.783 0.00 0.00 41.25 3.53
2041 2296 4.823790 ACCACGACAAGTAATTTGGAAC 57.176 40.909 0.00 0.00 41.25 3.62
2042 2297 3.249080 ACCACGACAAGTAATTTGGAACG 59.751 43.478 0.00 0.00 41.25 3.95
2043 2298 3.364565 CCACGACAAGTAATTTGGAACGG 60.365 47.826 0.00 0.00 41.25 4.44
2044 2299 3.495377 CACGACAAGTAATTTGGAACGGA 59.505 43.478 0.00 0.00 41.25 4.69
2045 2300 3.744426 ACGACAAGTAATTTGGAACGGAG 59.256 43.478 0.00 0.00 41.25 4.63
2046 2301 3.124636 CGACAAGTAATTTGGAACGGAGG 59.875 47.826 0.00 0.00 41.25 4.30
2047 2302 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
2048 2303 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
2049 2304 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2050 2305 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2051 2306 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2052 2307 4.720273 AGTAATTTGGAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
2053 2308 3.840124 ATTTGGAACGGAGGGAGTATC 57.160 47.619 0.00 0.00 0.00 2.24
2054 2309 2.544844 TTGGAACGGAGGGAGTATCT 57.455 50.000 0.00 0.00 33.73 1.98
2055 2310 2.068834 TGGAACGGAGGGAGTATCTC 57.931 55.000 0.00 0.00 33.92 2.75
2084 2339 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2085 2340 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2086 2341 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2087 2342 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2088 2343 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2094 2349 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2095 2350 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2096 2351 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2097 2352 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2100 2355 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2112 2367 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2113 2368 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2114 2369 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2115 2370 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2116 2371 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2117 2372 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2118 2373 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2119 2374 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2120 2375 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2121 2376 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2122 2377 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2123 2378 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2124 2379 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2125 2380 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2126 2381 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2127 2382 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2128 2383 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2129 2384 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2130 2385 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2140 2395 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2141 2396 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2142 2397 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2143 2398 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2144 2399 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2145 2400 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2146 2401 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2147 2402 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2148 2403 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2149 2404 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2150 2405 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2151 2406 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2152 2407 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2153 2408 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2154 2409 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2155 2410 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2156 2411 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2157 2412 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2158 2413 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2159 2414 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2160 2415 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2161 2416 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2162 2417 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2163 2418 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2164 2419 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2165 2420 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2166 2421 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2178 2433 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2179 2434 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2180 2435 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2181 2436 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2182 2437 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2183 2438 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2184 2439 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2185 2440 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2186 2441 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2187 2442 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2188 2443 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2189 2444 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2190 2445 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
2191 2446 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
2192 2447 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
2193 2448 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
2194 2449 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
2195 2450 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
2196 2451 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
2197 2452 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
2198 2453 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
2199 2454 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
2211 2466 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2212 2467 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2213 2468 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2214 2469 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2215 2470 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2216 2471 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2217 2472 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2218 2473 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2219 2474 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2220 2475 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2221 2476 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2222 2477 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2223 2478 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2224 2479 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2225 2480 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2226 2481 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2230 2485 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2231 2486 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2232 2487 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2233 2488 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2234 2489 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2235 2490 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2236 2491 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2237 2492 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2270 2525 6.664428 GGGAGTATCTCTGAAGAGCTTAAT 57.336 41.667 2.26 0.00 41.80 1.40
2271 2526 7.061566 GGGAGTATCTCTGAAGAGCTTAATT 57.938 40.000 2.26 0.00 41.80 1.40
2273 2528 6.861055 GGAGTATCTCTGAAGAGCTTAATTCG 59.139 42.308 2.26 0.00 41.80 3.34
2280 2536 7.604164 TCTCTGAAGAGCTTAATTCGTTTCATT 59.396 33.333 2.26 0.00 41.80 2.57
2291 2547 0.244450 CGTTTCATTGTGGCATGCCT 59.756 50.000 35.53 14.65 36.94 4.75
2322 2578 7.591795 CGTACTAGACAACCTCTGCAATTATAG 59.408 40.741 0.00 0.00 0.00 1.31
2324 2581 4.455606 AGACAACCTCTGCAATTATAGCC 58.544 43.478 0.00 0.00 0.00 3.93
2326 2583 4.860022 ACAACCTCTGCAATTATAGCCTT 58.140 39.130 0.00 0.00 0.00 4.35
2349 2617 8.306761 CCTTAAATGCTGATTACCAAACTTTCT 58.693 33.333 0.00 0.00 0.00 2.52
2364 2632 8.999431 ACCAAACTTTCTATGTAACACTGTATG 58.001 33.333 0.00 0.00 0.00 2.39
2383 2651 9.177608 ACTGTATGTGTGCATATTCAGTTTATT 57.822 29.630 12.69 0.00 39.67 1.40
2388 2656 7.751732 TGTGTGCATATTCAGTTTATTCACTC 58.248 34.615 0.00 0.00 28.58 3.51
2396 2664 6.539649 TTCAGTTTATTCACTCGTTTCCAG 57.460 37.500 0.00 0.00 0.00 3.86
2409 2677 7.040201 TCACTCGTTTCCAGTAATAGTACAACT 60.040 37.037 2.81 0.00 32.12 3.16
2412 2680 7.310664 TCGTTTCCAGTAATAGTACAACTCAG 58.689 38.462 2.81 0.00 32.12 3.35
2428 2696 5.540337 ACAACTCAGTGGTCTCTCTTGATTA 59.460 40.000 0.00 0.00 0.00 1.75
2432 2700 8.006298 ACTCAGTGGTCTCTCTTGATTATAAG 57.994 38.462 0.00 0.00 0.00 1.73
2446 2719 9.613428 TCTTGATTATAAGGAACACAATACAGG 57.387 33.333 0.00 0.00 0.00 4.00
2448 2721 8.958119 TGATTATAAGGAACACAATACAGGTC 57.042 34.615 0.00 0.00 0.00 3.85
2453 2726 4.084287 AGGAACACAATACAGGTCTACGA 58.916 43.478 0.00 0.00 0.00 3.43
2454 2727 4.710375 AGGAACACAATACAGGTCTACGAT 59.290 41.667 0.00 0.00 0.00 3.73
2455 2728 5.187186 AGGAACACAATACAGGTCTACGATT 59.813 40.000 0.00 0.00 0.00 3.34
2456 2729 5.291128 GGAACACAATACAGGTCTACGATTG 59.709 44.000 0.00 0.00 34.40 2.67
2458 2731 5.790593 ACACAATACAGGTCTACGATTGTT 58.209 37.500 0.00 0.00 38.37 2.83
2459 2732 6.927416 ACACAATACAGGTCTACGATTGTTA 58.073 36.000 0.00 0.00 38.37 2.41
2461 2734 7.705325 ACACAATACAGGTCTACGATTGTTATC 59.295 37.037 0.00 0.00 38.37 1.75
2462 2735 7.704899 CACAATACAGGTCTACGATTGTTATCA 59.295 37.037 0.00 0.00 38.37 2.15
2463 2736 7.921214 ACAATACAGGTCTACGATTGTTATCAG 59.079 37.037 0.00 0.00 37.43 2.90
2464 2737 5.263968 ACAGGTCTACGATTGTTATCAGG 57.736 43.478 0.00 0.00 0.00 3.86
2497 2775 7.993758 ACTTTACCTAATCCTTATTGCCTTCTC 59.006 37.037 0.00 0.00 0.00 2.87
2514 2792 4.082571 CCTTCTCGTTGATGGCATTTTTCT 60.083 41.667 0.00 0.00 33.96 2.52
2673 2953 8.934023 ATTGGTCAGGTAAAAGTGAAGATTTA 57.066 30.769 0.00 0.00 0.00 1.40
2865 3146 9.823647 CTTGAGTGTATATGAAATTGACTACCT 57.176 33.333 0.00 0.00 0.00 3.08
3098 3381 8.628882 ATTTGTTTTGTTCTGTACTGTTTAGC 57.371 30.769 0.00 0.00 0.00 3.09
3232 3519 4.874396 TGCTGAGAATCTCTTAAGCATGTG 59.126 41.667 16.62 0.00 39.77 3.21
3247 3534 5.954296 AGCATGTGATTATAGTGATTGCC 57.046 39.130 0.00 0.00 0.00 4.52
3279 3566 6.636705 GTTTCCAAACCTAACCTTCAAAACT 58.363 36.000 0.00 0.00 32.82 2.66
3304 3591 6.133356 TGGAATGAACCTAACCTTCAAAACT 58.867 36.000 0.00 0.00 31.48 2.66
3324 3611 1.533625 TGGAATGCCTTGTCGAAAGG 58.466 50.000 17.15 17.15 40.39 3.11
3351 3638 2.609002 TGTATCATGACTGCATTGCGTC 59.391 45.455 19.70 19.70 34.56 5.19
3380 3668 6.014584 GGGTCAAACCATCATAAAAGGAAACT 60.015 38.462 0.00 0.00 41.65 2.66
3397 3685 4.798387 GGAAACTTTGCCGTTTATATGCAG 59.202 41.667 0.00 0.00 37.24 4.41
3407 3695 6.102663 GCCGTTTATATGCAGATCTGTCTAT 58.897 40.000 23.38 19.95 32.09 1.98
3484 3772 3.655481 GGTGGTGACCGCAAGAAG 58.345 61.111 17.96 0.00 43.02 2.85
3602 3898 2.503356 AGCTGAAGTGGACCAGAATAGG 59.497 50.000 0.00 0.00 32.37 2.57
3612 4033 1.486726 ACCAGAATAGGTAGTGCAGCC 59.513 52.381 0.00 0.00 40.98 4.85
3686 4107 2.223479 CGCACACTTTTACCAAGCAAGT 60.223 45.455 0.00 0.00 0.00 3.16
3742 4167 8.753133 TCATCTCATCAGTAACAATAAGAGTGT 58.247 33.333 0.00 0.00 0.00 3.55
3815 4244 3.007506 TCGAGTCCTTATTTGTTCAGCCA 59.992 43.478 0.00 0.00 0.00 4.75
3827 4256 5.627499 TTGTTCAGCCAGATGTTGATTAC 57.373 39.130 0.00 0.00 0.00 1.89
3828 4257 4.650734 TGTTCAGCCAGATGTTGATTACA 58.349 39.130 0.00 0.00 41.97 2.41
3829 4258 5.069318 TGTTCAGCCAGATGTTGATTACAA 58.931 37.500 0.00 0.00 40.89 2.41
4283 4717 3.210227 TCTTGTCACAAAGGCATTCGAA 58.790 40.909 0.00 0.00 0.00 3.71
4286 4720 4.159377 TGTCACAAAGGCATTCGAATTC 57.841 40.909 8.21 3.09 0.00 2.17
4367 4870 0.521291 GCAAGTTCAACGCATAGCCA 59.479 50.000 0.00 0.00 0.00 4.75
4377 4883 1.233019 CGCATAGCCAGGAAATCCAG 58.767 55.000 1.67 0.00 38.89 3.86
4425 4934 0.813184 TATGGGGACGAGAACACGAC 59.187 55.000 0.00 0.00 37.03 4.34
4426 4935 2.126580 GGGGACGAGAACACGACG 60.127 66.667 0.00 0.00 37.03 5.12
4531 5041 2.166664 GGTCACTCACAGGTATCAGGAC 59.833 54.545 0.00 0.00 0.00 3.85
4546 5056 2.370849 TCAGGACTAAACCCAGGAACAC 59.629 50.000 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 4.295119 AGGAAGCGCAACCGACGT 62.295 61.111 11.47 0.00 36.29 4.34
97 99 1.272425 CCCTCTCCGCATATCCTCTCT 60.272 57.143 0.00 0.00 0.00 3.10
105 107 3.550431 GCAGCCCCTCTCCGCATA 61.550 66.667 0.00 0.00 0.00 3.14
455 458 0.998928 TGATTGCATGTGGGGTAGGT 59.001 50.000 0.00 0.00 0.00 3.08
606 609 4.154942 AGCCATTTGGATGAAAGTGACTT 58.845 39.130 0.00 0.00 37.39 3.01
709 714 2.333926 TGAACGCGATCACCTAAACAG 58.666 47.619 15.63 0.00 0.00 3.16
770 791 7.819415 TGGAAATGAACTGTACTAACTGATGAG 59.181 37.037 0.00 0.00 0.00 2.90
773 794 9.520515 AAATGGAAATGAACTGTACTAACTGAT 57.479 29.630 0.00 0.00 0.00 2.90
864 895 1.701704 GTCCGCTTCATTTGCTTTGG 58.298 50.000 0.00 0.00 0.00 3.28
899 930 4.159506 CCTTTGTTTGTTTGTCCCAGAAGA 59.840 41.667 0.00 0.00 0.00 2.87
900 931 4.432712 CCTTTGTTTGTTTGTCCCAGAAG 58.567 43.478 0.00 0.00 0.00 2.85
901 932 3.196685 CCCTTTGTTTGTTTGTCCCAGAA 59.803 43.478 0.00 0.00 0.00 3.02
902 933 2.763448 CCCTTTGTTTGTTTGTCCCAGA 59.237 45.455 0.00 0.00 0.00 3.86
903 934 2.158971 CCCCTTTGTTTGTTTGTCCCAG 60.159 50.000 0.00 0.00 0.00 4.45
904 935 1.834263 CCCCTTTGTTTGTTTGTCCCA 59.166 47.619 0.00 0.00 0.00 4.37
927 958 3.224269 GAGTTCGAAGGATAGCTACCCT 58.776 50.000 0.00 0.00 0.00 4.34
992 1023 0.379669 CTGCTCGTCCATGGCAATTC 59.620 55.000 6.96 0.00 35.49 2.17
1056 1087 1.333258 GCGGCAGATTCGTTCATAAGC 60.333 52.381 0.00 0.00 0.00 3.09
1136 1167 1.299939 GGGTGGGGAGGAAGAGAATT 58.700 55.000 0.00 0.00 0.00 2.17
1137 1168 0.624795 GGGGTGGGGAGGAAGAGAAT 60.625 60.000 0.00 0.00 0.00 2.40
1138 1169 1.229853 GGGGTGGGGAGGAAGAGAA 60.230 63.158 0.00 0.00 0.00 2.87
1150 1183 0.107848 AAGTAGAATTCGCGGGGTGG 60.108 55.000 6.13 0.00 0.00 4.61
1152 1185 0.177373 GGAAGTAGAATTCGCGGGGT 59.823 55.000 6.13 0.00 0.00 4.95
1214 1247 1.511850 CGTCTCTGTTGCCATCACAA 58.488 50.000 0.00 0.00 0.00 3.33
1221 1254 2.007608 GAAATACCCGTCTCTGTTGCC 58.992 52.381 0.00 0.00 0.00 4.52
1227 1260 1.436336 CCGCGAAATACCCGTCTCT 59.564 57.895 8.23 0.00 0.00 3.10
1257 1291 0.109781 ACAATTAAGCGCCGCTGTTG 60.110 50.000 14.52 19.82 39.62 3.33
1263 1297 1.455786 CTATCCGACAATTAAGCGCCG 59.544 52.381 2.29 0.00 0.00 6.46
1265 1299 3.361724 CGAACTATCCGACAATTAAGCGC 60.362 47.826 0.00 0.00 0.00 5.92
1268 1302 5.501897 GCCAACGAACTATCCGACAATTAAG 60.502 44.000 0.00 0.00 0.00 1.85
1269 1303 4.330620 GCCAACGAACTATCCGACAATTAA 59.669 41.667 0.00 0.00 0.00 1.40
1270 1304 3.866910 GCCAACGAACTATCCGACAATTA 59.133 43.478 0.00 0.00 0.00 1.40
1272 1306 2.277084 GCCAACGAACTATCCGACAAT 58.723 47.619 0.00 0.00 0.00 2.71
1277 1311 1.659098 GTTCTGCCAACGAACTATCCG 59.341 52.381 0.00 0.00 38.14 4.18
1278 1312 2.673368 CTGTTCTGCCAACGAACTATCC 59.327 50.000 0.00 0.00 40.95 2.59
1286 1320 1.443194 GCATGCTGTTCTGCCAACG 60.443 57.895 11.37 0.00 32.15 4.10
1293 1327 3.058160 GTGCGGGCATGCTGTTCT 61.058 61.111 18.92 0.00 35.36 3.01
1306 1340 1.717728 GTTCGTCAAACAGCGTGCG 60.718 57.895 0.00 0.00 37.82 5.34
1310 1344 4.496898 GCAGTTCGTCAAACAGCG 57.503 55.556 0.00 0.00 40.05 5.18
1313 1347 1.668751 GGTTGAGCAGTTCGTCAAACA 59.331 47.619 0.00 0.00 39.71 2.83
1326 1378 0.895100 TCAAGGTGCATGGGTTGAGC 60.895 55.000 0.00 0.00 0.00 4.26
1329 1381 0.604578 CCTTCAAGGTGCATGGGTTG 59.395 55.000 0.00 0.00 0.00 3.77
1331 1383 1.607467 GCCTTCAAGGTGCATGGGT 60.607 57.895 5.03 0.00 37.80 4.51
1332 1384 0.034186 TAGCCTTCAAGGTGCATGGG 60.034 55.000 5.03 0.00 37.80 4.00
1333 1385 1.098050 GTAGCCTTCAAGGTGCATGG 58.902 55.000 5.03 0.00 37.80 3.66
1334 1386 1.098050 GGTAGCCTTCAAGGTGCATG 58.902 55.000 5.03 0.00 37.80 4.06
1335 1387 0.392998 CGGTAGCCTTCAAGGTGCAT 60.393 55.000 5.03 0.00 37.80 3.96
1336 1388 1.003839 CGGTAGCCTTCAAGGTGCA 60.004 57.895 5.03 0.00 37.80 4.57
1337 1389 0.741221 CTCGGTAGCCTTCAAGGTGC 60.741 60.000 5.03 0.00 37.80 5.01
1338 1390 0.108138 CCTCGGTAGCCTTCAAGGTG 60.108 60.000 5.03 0.00 37.80 4.00
1339 1391 1.265454 CCCTCGGTAGCCTTCAAGGT 61.265 60.000 5.03 0.00 37.80 3.50
1340 1392 1.522569 CCCTCGGTAGCCTTCAAGG 59.477 63.158 0.00 0.00 38.80 3.61
1341 1393 1.522569 CCCCTCGGTAGCCTTCAAG 59.477 63.158 0.00 0.00 0.00 3.02
1342 1394 2.666098 GCCCCTCGGTAGCCTTCAA 61.666 63.158 0.00 0.00 0.00 2.69
1343 1395 3.081409 GCCCCTCGGTAGCCTTCA 61.081 66.667 0.00 0.00 0.00 3.02
1344 1396 1.984288 AATGCCCCTCGGTAGCCTTC 61.984 60.000 0.00 0.00 0.00 3.46
1345 1397 1.984288 GAATGCCCCTCGGTAGCCTT 61.984 60.000 0.00 0.00 0.00 4.35
1346 1398 2.366972 AATGCCCCTCGGTAGCCT 60.367 61.111 0.00 0.00 0.00 4.58
1347 1399 2.111251 GAATGCCCCTCGGTAGCC 59.889 66.667 0.00 0.00 0.00 3.93
1348 1400 2.111251 GGAATGCCCCTCGGTAGC 59.889 66.667 0.00 0.00 0.00 3.58
1349 1401 1.968050 AACGGAATGCCCCTCGGTAG 61.968 60.000 0.00 0.00 0.00 3.18
1350 1402 1.963464 GAACGGAATGCCCCTCGGTA 61.963 60.000 0.00 0.00 0.00 4.02
1351 1403 3.325201 GAACGGAATGCCCCTCGGT 62.325 63.158 0.00 0.00 0.00 4.69
1352 1404 2.513897 GAACGGAATGCCCCTCGG 60.514 66.667 0.00 0.00 0.00 4.63
1353 1405 1.815421 CTGAACGGAATGCCCCTCG 60.815 63.158 0.00 0.00 0.00 4.63
1354 1406 1.026718 CACTGAACGGAATGCCCCTC 61.027 60.000 0.00 0.00 0.00 4.30
1355 1407 1.002134 CACTGAACGGAATGCCCCT 60.002 57.895 0.00 0.00 0.00 4.79
1356 1408 0.394352 ATCACTGAACGGAATGCCCC 60.394 55.000 0.00 0.00 0.00 5.80
1357 1409 0.734889 CATCACTGAACGGAATGCCC 59.265 55.000 0.00 0.00 0.00 5.36
1358 1410 1.398390 GTCATCACTGAACGGAATGCC 59.602 52.381 0.00 0.00 31.85 4.40
1359 1411 2.350522 AGTCATCACTGAACGGAATGC 58.649 47.619 0.00 0.00 31.85 3.56
1360 1412 4.442403 CGATAGTCATCACTGAACGGAATG 59.558 45.833 0.00 0.00 33.62 2.67
1361 1413 4.499865 CCGATAGTCATCACTGAACGGAAT 60.500 45.833 5.49 0.00 41.80 3.01
1362 1414 3.181490 CCGATAGTCATCACTGAACGGAA 60.181 47.826 5.49 0.00 41.80 4.30
1363 1415 2.357952 CCGATAGTCATCACTGAACGGA 59.642 50.000 5.49 0.00 41.80 4.69
1364 1416 2.099263 ACCGATAGTCATCACTGAACGG 59.901 50.000 8.81 8.81 43.29 4.44
1365 1417 3.422417 ACCGATAGTCATCACTGAACG 57.578 47.619 0.00 0.00 33.62 3.95
1366 1418 4.327357 CACAACCGATAGTCATCACTGAAC 59.673 45.833 0.00 0.00 33.62 3.18
1367 1419 4.494484 CACAACCGATAGTCATCACTGAA 58.506 43.478 0.00 0.00 33.62 3.02
1368 1420 3.119137 CCACAACCGATAGTCATCACTGA 60.119 47.826 0.00 0.00 33.62 3.41
1369 1421 3.190079 CCACAACCGATAGTCATCACTG 58.810 50.000 0.00 0.00 33.62 3.66
1370 1422 2.832129 ACCACAACCGATAGTCATCACT 59.168 45.455 0.00 0.00 36.55 3.41
1371 1423 3.247006 ACCACAACCGATAGTCATCAC 57.753 47.619 0.00 0.00 0.00 3.06
1372 1424 3.973206 AACCACAACCGATAGTCATCA 57.027 42.857 0.00 0.00 0.00 3.07
1373 1425 3.374058 CCAAACCACAACCGATAGTCATC 59.626 47.826 0.00 0.00 0.00 2.92
1374 1426 3.343617 CCAAACCACAACCGATAGTCAT 58.656 45.455 0.00 0.00 0.00 3.06
1375 1427 2.773487 CCAAACCACAACCGATAGTCA 58.227 47.619 0.00 0.00 0.00 3.41
1376 1428 1.467342 GCCAAACCACAACCGATAGTC 59.533 52.381 0.00 0.00 0.00 2.59
1377 1429 1.530323 GCCAAACCACAACCGATAGT 58.470 50.000 0.00 0.00 0.00 2.12
1378 1430 0.446222 CGCCAAACCACAACCGATAG 59.554 55.000 0.00 0.00 0.00 2.08
1379 1431 1.579084 GCGCCAAACCACAACCGATA 61.579 55.000 0.00 0.00 0.00 2.92
1380 1432 2.914908 GCGCCAAACCACAACCGAT 61.915 57.895 0.00 0.00 0.00 4.18
1381 1433 3.587933 GCGCCAAACCACAACCGA 61.588 61.111 0.00 0.00 0.00 4.69
1382 1434 4.973360 CGCGCCAAACCACAACCG 62.973 66.667 0.00 0.00 0.00 4.44
1401 1453 3.726517 ACACGCTGTGGCATTCGC 61.727 61.111 12.18 0.00 37.94 4.70
1402 1454 2.174107 CACACGCTGTGGCATTCG 59.826 61.111 12.18 0.00 44.27 3.34
1410 1462 1.600636 CCCATTCCACACACGCTGT 60.601 57.895 0.00 0.00 0.00 4.40
1411 1463 2.981560 GCCCATTCCACACACGCTG 61.982 63.158 0.00 0.00 0.00 5.18
1412 1464 2.672996 GCCCATTCCACACACGCT 60.673 61.111 0.00 0.00 0.00 5.07
1413 1465 1.876497 AATGCCCATTCCACACACGC 61.876 55.000 0.00 0.00 0.00 5.34
1414 1466 0.109179 CAATGCCCATTCCACACACG 60.109 55.000 0.00 0.00 0.00 4.49
1415 1467 0.390209 GCAATGCCCATTCCACACAC 60.390 55.000 0.00 0.00 0.00 3.82
1416 1468 1.875420 CGCAATGCCCATTCCACACA 61.875 55.000 0.00 0.00 0.00 3.72
1417 1469 1.153784 CGCAATGCCCATTCCACAC 60.154 57.895 0.00 0.00 0.00 3.82
1418 1470 2.349672 CCGCAATGCCCATTCCACA 61.350 57.895 0.00 0.00 0.00 4.17
1419 1471 1.394266 ATCCGCAATGCCCATTCCAC 61.394 55.000 0.00 0.00 0.00 4.02
1420 1472 0.184692 TATCCGCAATGCCCATTCCA 59.815 50.000 0.00 0.00 0.00 3.53
1421 1473 0.598065 GTATCCGCAATGCCCATTCC 59.402 55.000 0.00 0.00 0.00 3.01
1422 1474 0.598065 GGTATCCGCAATGCCCATTC 59.402 55.000 0.00 0.00 34.21 2.67
1423 1475 2.732289 GGTATCCGCAATGCCCATT 58.268 52.632 0.00 0.00 34.21 3.16
1424 1476 4.500265 GGTATCCGCAATGCCCAT 57.500 55.556 0.00 0.00 34.21 4.00
1427 1479 2.555547 GCAGGGTATCCGCAATGCC 61.556 63.158 0.00 0.00 39.31 4.40
1428 1480 2.555547 GGCAGGGTATCCGCAATGC 61.556 63.158 10.35 0.00 38.33 3.56
1429 1481 1.898574 GGGCAGGGTATCCGCAATG 60.899 63.158 10.35 0.00 38.33 2.82
1430 1482 0.766674 TAGGGCAGGGTATCCGCAAT 60.767 55.000 10.35 2.02 38.33 3.56
1431 1483 1.383386 TAGGGCAGGGTATCCGCAA 60.383 57.895 10.35 0.00 38.33 4.85
1432 1484 1.837051 CTAGGGCAGGGTATCCGCA 60.837 63.158 10.35 0.00 38.33 5.69
1433 1485 2.584391 CCTAGGGCAGGGTATCCGC 61.584 68.421 0.00 0.79 41.26 5.54
1434 1486 3.793060 CCTAGGGCAGGGTATCCG 58.207 66.667 0.00 0.00 41.26 4.18
1451 1503 3.570550 AGTCAGTAGTGCGAGATTATCCC 59.429 47.826 0.00 0.00 0.00 3.85
1453 1505 4.541779 CCAGTCAGTAGTGCGAGATTATC 58.458 47.826 0.00 0.00 0.00 1.75
1454 1506 3.243569 GCCAGTCAGTAGTGCGAGATTAT 60.244 47.826 0.00 0.00 0.00 1.28
1455 1507 2.099263 GCCAGTCAGTAGTGCGAGATTA 59.901 50.000 0.00 0.00 0.00 1.75
1456 1508 1.134965 GCCAGTCAGTAGTGCGAGATT 60.135 52.381 0.00 0.00 0.00 2.40
1461 1519 0.108662 TGATGCCAGTCAGTAGTGCG 60.109 55.000 0.00 0.00 0.00 5.34
1471 1529 0.111061 ACACACACCATGATGCCAGT 59.889 50.000 0.00 0.00 0.00 4.00
1474 1532 2.819608 ACTAAACACACACCATGATGCC 59.180 45.455 0.00 0.00 0.00 4.40
1485 1668 7.335491 CGAAGTACTGAGAAAACTAAACACAC 58.665 38.462 0.00 0.00 0.00 3.82
1492 1683 4.379186 CGCTCCGAAGTACTGAGAAAACTA 60.379 45.833 11.80 0.00 32.76 2.24
1496 1687 2.156917 TCGCTCCGAAGTACTGAGAAA 58.843 47.619 11.80 0.00 32.76 2.52
1509 1700 0.179073 AATCTGGACCATTCGCTCCG 60.179 55.000 0.00 0.00 0.00 4.63
1518 1709 7.888021 ACACTTTGTCAATATTAATCTGGACCA 59.112 33.333 6.03 0.00 0.00 4.02
1519 1710 8.281212 ACACTTTGTCAATATTAATCTGGACC 57.719 34.615 6.03 0.00 0.00 4.46
1525 1716 9.485591 CACGGTTACACTTTGTCAATATTAATC 57.514 33.333 0.00 0.00 0.00 1.75
1526 1717 9.221933 TCACGGTTACACTTTGTCAATATTAAT 57.778 29.630 0.00 0.00 0.00 1.40
1527 1718 8.604640 TCACGGTTACACTTTGTCAATATTAA 57.395 30.769 0.00 0.00 0.00 1.40
1528 1719 7.874016 ACTCACGGTTACACTTTGTCAATATTA 59.126 33.333 0.00 0.00 0.00 0.98
1529 1720 6.708949 ACTCACGGTTACACTTTGTCAATATT 59.291 34.615 0.00 0.00 0.00 1.28
1530 1721 6.228258 ACTCACGGTTACACTTTGTCAATAT 58.772 36.000 0.00 0.00 0.00 1.28
1531 1722 5.603596 ACTCACGGTTACACTTTGTCAATA 58.396 37.500 0.00 0.00 0.00 1.90
1532 1723 4.448210 ACTCACGGTTACACTTTGTCAAT 58.552 39.130 0.00 0.00 0.00 2.57
1533 1724 3.864243 ACTCACGGTTACACTTTGTCAA 58.136 40.909 0.00 0.00 0.00 3.18
1534 1725 3.530265 ACTCACGGTTACACTTTGTCA 57.470 42.857 0.00 0.00 0.00 3.58
1536 1727 3.243975 CCCTACTCACGGTTACACTTTGT 60.244 47.826 0.00 0.00 0.00 2.83
1538 1729 2.301009 CCCCTACTCACGGTTACACTTT 59.699 50.000 0.00 0.00 0.00 2.66
1539 1730 1.897802 CCCCTACTCACGGTTACACTT 59.102 52.381 0.00 0.00 0.00 3.16
1540 1731 1.553706 CCCCTACTCACGGTTACACT 58.446 55.000 0.00 0.00 0.00 3.55
1542 1733 1.259840 GCCCCCTACTCACGGTTACA 61.260 60.000 0.00 0.00 0.00 2.41
1543 1734 0.974525 AGCCCCCTACTCACGGTTAC 60.975 60.000 0.00 0.00 0.00 2.50
1546 1737 2.683933 CAGCCCCCTACTCACGGT 60.684 66.667 0.00 0.00 0.00 4.83
1547 1738 2.291043 AACAGCCCCCTACTCACGG 61.291 63.158 0.00 0.00 0.00 4.94
1550 1741 1.203262 ACTACAACAGCCCCCTACTCA 60.203 52.381 0.00 0.00 0.00 3.41
1551 1742 1.569653 ACTACAACAGCCCCCTACTC 58.430 55.000 0.00 0.00 0.00 2.59
1552 1743 2.040342 AACTACAACAGCCCCCTACT 57.960 50.000 0.00 0.00 0.00 2.57
1553 1744 3.492137 CGATAACTACAACAGCCCCCTAC 60.492 52.174 0.00 0.00 0.00 3.18
1555 1746 1.485066 CGATAACTACAACAGCCCCCT 59.515 52.381 0.00 0.00 0.00 4.79
1556 1747 1.483415 TCGATAACTACAACAGCCCCC 59.517 52.381 0.00 0.00 0.00 5.40
1558 1749 3.793559 ACATCGATAACTACAACAGCCC 58.206 45.455 0.00 0.00 0.00 5.19
1569 1800 8.583765 GCAAAACAAATTTAGGACATCGATAAC 58.416 33.333 0.00 0.00 0.00 1.89
1579 1810 7.232534 ACCTATCACTGCAAAACAAATTTAGGA 59.767 33.333 0.00 0.00 0.00 2.94
1586 1817 5.381757 ACCTACCTATCACTGCAAAACAAA 58.618 37.500 0.00 0.00 0.00 2.83
1587 1818 4.980573 ACCTACCTATCACTGCAAAACAA 58.019 39.130 0.00 0.00 0.00 2.83
1588 1819 4.634012 ACCTACCTATCACTGCAAAACA 57.366 40.909 0.00 0.00 0.00 2.83
1589 1820 6.403878 TCTAACCTACCTATCACTGCAAAAC 58.596 40.000 0.00 0.00 0.00 2.43
1590 1821 6.614694 TCTAACCTACCTATCACTGCAAAA 57.385 37.500 0.00 0.00 0.00 2.44
1603 1839 6.346096 TGCTATCAACACATTCTAACCTACC 58.654 40.000 0.00 0.00 0.00 3.18
1611 1847 5.503927 ACCAATCTGCTATCAACACATTCT 58.496 37.500 0.00 0.00 0.00 2.40
1678 1923 9.639601 ATTCGATTATCTATTAATCTGCGTCAA 57.360 29.630 0.00 0.00 42.72 3.18
1709 1956 7.184106 CACAGACGTAAAGTTTTGTGTTACAT 58.816 34.615 8.56 0.00 40.61 2.29
1729 1976 7.440255 GGTTAAGCTACAAAGAAACTACACAGA 59.560 37.037 0.00 0.00 0.00 3.41
1755 2002 6.313905 AGGTAAGAACTCATAATTCAACAGCG 59.686 38.462 0.00 0.00 0.00 5.18
1757 2004 7.467623 GCAGGTAAGAACTCATAATTCAACAG 58.532 38.462 0.00 0.00 0.00 3.16
1805 2052 8.911247 ACACAGACAAAAATTAAGTGAGAAAC 57.089 30.769 0.00 0.00 0.00 2.78
1806 2053 9.921637 AAACACAGACAAAAATTAAGTGAGAAA 57.078 25.926 0.00 0.00 0.00 2.52
1820 2067 6.126409 AGAAGGGAATACAAACACAGACAAA 58.874 36.000 0.00 0.00 0.00 2.83
1843 2090 5.929697 TGCAATCTCAGTAACTTGTGAAG 57.070 39.130 0.00 0.00 0.00 3.02
1845 2092 5.308014 ACATGCAATCTCAGTAACTTGTGA 58.692 37.500 0.00 0.00 0.00 3.58
1858 2105 2.428530 TCTGAGCGTAGACATGCAATCT 59.571 45.455 8.73 8.73 39.30 2.40
1871 2118 2.738846 CAAGTTAAGCACATCTGAGCGT 59.261 45.455 0.00 0.00 36.73 5.07
1872 2119 2.094894 CCAAGTTAAGCACATCTGAGCG 59.905 50.000 0.00 0.00 36.73 5.03
1893 2140 7.816995 TGGTTTCATGGTTTTGTTCATATAAGC 59.183 33.333 0.00 0.00 0.00 3.09
1899 2154 5.128499 TGACTGGTTTCATGGTTTTGTTCAT 59.872 36.000 0.00 0.00 0.00 2.57
1902 2157 4.466015 ACTGACTGGTTTCATGGTTTTGTT 59.534 37.500 0.00 0.00 0.00 2.83
1965 2220 6.893020 AGTAATTTGGAACAGAGGGAGTAT 57.107 37.500 0.00 0.00 42.39 2.12
1966 2221 6.043938 ACAAGTAATTTGGAACAGAGGGAGTA 59.956 38.462 0.00 0.00 42.39 2.59
1967 2222 5.163088 ACAAGTAATTTGGAACAGAGGGAGT 60.163 40.000 0.00 0.00 42.39 3.85
1968 2223 5.316987 ACAAGTAATTTGGAACAGAGGGAG 58.683 41.667 0.00 0.00 42.39 4.30
1969 2224 5.163141 TGACAAGTAATTTGGAACAGAGGGA 60.163 40.000 0.00 0.00 42.39 4.20
1970 2225 5.070001 TGACAAGTAATTTGGAACAGAGGG 58.930 41.667 0.00 0.00 42.39 4.30
1971 2226 6.349611 CCATGACAAGTAATTTGGAACAGAGG 60.350 42.308 0.00 0.00 42.39 3.69
1972 2227 6.207417 ACCATGACAAGTAATTTGGAACAGAG 59.793 38.462 0.00 0.00 42.39 3.35
1973 2228 6.068010 ACCATGACAAGTAATTTGGAACAGA 58.932 36.000 0.00 0.00 42.39 3.41
1974 2229 6.331369 ACCATGACAAGTAATTTGGAACAG 57.669 37.500 0.00 0.00 42.39 3.16
1975 2230 6.723298 AACCATGACAAGTAATTTGGAACA 57.277 33.333 0.00 0.00 41.25 3.18
1976 2231 9.191995 CTAAAACCATGACAAGTAATTTGGAAC 57.808 33.333 0.00 0.00 41.25 3.62
1977 2232 8.919145 ACTAAAACCATGACAAGTAATTTGGAA 58.081 29.630 0.00 0.00 41.25 3.53
1978 2233 8.472007 ACTAAAACCATGACAAGTAATTTGGA 57.528 30.769 0.00 0.00 41.25 3.53
1979 2234 9.191995 GAACTAAAACCATGACAAGTAATTTGG 57.808 33.333 0.00 0.00 41.25 3.28
1980 2235 9.743057 TGAACTAAAACCATGACAAGTAATTTG 57.257 29.630 0.00 0.00 42.68 2.32
1986 2241 9.097257 CAAATTTGAACTAAAACCATGACAAGT 57.903 29.630 13.08 0.00 0.00 3.16
1987 2242 9.311916 TCAAATTTGAACTAAAACCATGACAAG 57.688 29.630 18.45 0.00 33.55 3.16
1988 2243 9.658799 TTCAAATTTGAACTAAAACCATGACAA 57.341 25.926 26.01 1.80 41.88 3.18
2003 2258 7.313646 TGTCGTGGTTTTAGTTCAAATTTGAA 58.686 30.769 26.01 26.01 44.31 2.69
2004 2259 6.853720 TGTCGTGGTTTTAGTTCAAATTTGA 58.146 32.000 16.91 16.91 34.92 2.69
2005 2260 7.274686 ACTTGTCGTGGTTTTAGTTCAAATTTG 59.725 33.333 12.15 12.15 0.00 2.32
2006 2261 7.317390 ACTTGTCGTGGTTTTAGTTCAAATTT 58.683 30.769 0.00 0.00 0.00 1.82
2007 2262 6.859017 ACTTGTCGTGGTTTTAGTTCAAATT 58.141 32.000 0.00 0.00 0.00 1.82
2008 2263 6.445357 ACTTGTCGTGGTTTTAGTTCAAAT 57.555 33.333 0.00 0.00 0.00 2.32
2009 2264 5.883503 ACTTGTCGTGGTTTTAGTTCAAA 57.116 34.783 0.00 0.00 0.00 2.69
2010 2265 6.981762 TTACTTGTCGTGGTTTTAGTTCAA 57.018 33.333 0.00 0.00 0.00 2.69
2011 2266 7.556733 AATTACTTGTCGTGGTTTTAGTTCA 57.443 32.000 0.00 0.00 0.00 3.18
2012 2267 7.377662 CCAAATTACTTGTCGTGGTTTTAGTTC 59.622 37.037 0.00 0.00 32.65 3.01
2013 2268 7.067251 TCCAAATTACTTGTCGTGGTTTTAGTT 59.933 33.333 0.00 0.00 32.65 2.24
2014 2269 6.543100 TCCAAATTACTTGTCGTGGTTTTAGT 59.457 34.615 0.00 0.00 32.65 2.24
2015 2270 6.961576 TCCAAATTACTTGTCGTGGTTTTAG 58.038 36.000 0.00 0.00 32.65 1.85
2016 2271 6.939132 TCCAAATTACTTGTCGTGGTTTTA 57.061 33.333 0.00 0.00 32.65 1.52
2017 2272 5.838531 TCCAAATTACTTGTCGTGGTTTT 57.161 34.783 0.00 0.00 32.65 2.43
2018 2273 5.584442 GTTCCAAATTACTTGTCGTGGTTT 58.416 37.500 0.00 0.00 32.65 3.27
2019 2274 4.260866 CGTTCCAAATTACTTGTCGTGGTT 60.261 41.667 0.00 0.00 32.65 3.67
2020 2275 3.249080 CGTTCCAAATTACTTGTCGTGGT 59.751 43.478 0.00 0.00 32.65 4.16
2021 2276 3.364565 CCGTTCCAAATTACTTGTCGTGG 60.365 47.826 0.00 0.00 32.65 4.94
2022 2277 3.495377 TCCGTTCCAAATTACTTGTCGTG 59.505 43.478 0.00 0.00 32.65 4.35
2023 2278 3.731089 TCCGTTCCAAATTACTTGTCGT 58.269 40.909 0.00 0.00 32.65 4.34
2024 2279 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
2025 2280 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
2026 2281 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
2027 2282 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
2028 2283 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
2029 2284 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2030 2285 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2031 2286 4.966805 AGATACTCCCTCCGTTCCAAATTA 59.033 41.667 0.00 0.00 0.00 1.40
2032 2287 3.780850 AGATACTCCCTCCGTTCCAAATT 59.219 43.478 0.00 0.00 0.00 1.82
2033 2288 3.385115 AGATACTCCCTCCGTTCCAAAT 58.615 45.455 0.00 0.00 0.00 2.32
2034 2289 2.764572 GAGATACTCCCTCCGTTCCAAA 59.235 50.000 0.00 0.00 0.00 3.28
2035 2290 2.024273 AGAGATACTCCCTCCGTTCCAA 60.024 50.000 0.00 0.00 0.00 3.53
2036 2291 1.569548 AGAGATACTCCCTCCGTTCCA 59.430 52.381 0.00 0.00 0.00 3.53
2037 2292 2.368311 AGAGATACTCCCTCCGTTCC 57.632 55.000 0.00 0.00 0.00 3.62
2038 2293 5.848833 TTTTAGAGATACTCCCTCCGTTC 57.151 43.478 0.00 0.00 0.00 3.95
2061 2316 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
2062 2317 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
2063 2318 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
2064 2319 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2065 2320 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2066 2321 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2067 2322 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2068 2323 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2069 2324 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2070 2325 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2095 2350 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2096 2351 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2097 2352 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2098 2353 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2099 2354 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2100 2355 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2101 2356 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2102 2357 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2103 2358 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2104 2359 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2105 2360 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2106 2361 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2107 2362 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2108 2363 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2109 2364 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2110 2365 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2111 2366 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2112 2367 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2113 2368 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2114 2369 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2119 2374 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2120 2375 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2121 2376 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2122 2377 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2123 2378 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2124 2379 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2125 2380 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2126 2381 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2127 2382 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2128 2383 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2129 2384 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2130 2385 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2131 2386 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2132 2387 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2133 2388 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2134 2389 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2135 2390 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2136 2391 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2137 2392 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2138 2393 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2139 2394 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2140 2395 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2141 2396 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2142 2397 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2143 2398 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2144 2399 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2145 2400 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2146 2401 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2147 2402 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2148 2403 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2149 2404 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2150 2405 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2151 2406 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2152 2407 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2153 2408 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2154 2409 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2155 2410 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2156 2411 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2170 2425 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
2171 2426 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
2172 2427 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
2173 2428 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
2174 2429 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
2175 2430 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
2176 2431 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
2177 2432 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
2178 2433 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
2179 2434 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
2194 2449 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2195 2450 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2196 2451 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2197 2452 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2198 2453 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2199 2454 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2200 2455 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2201 2456 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2202 2457 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2203 2458 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2204 2459 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2205 2460 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2206 2461 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2207 2462 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2208 2463 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2213 2468 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2214 2469 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2215 2470 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2216 2471 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2217 2472 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2218 2473 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2219 2474 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2240 2495 3.216187 TCAGAGATACTCCCTCCGAAG 57.784 52.381 0.00 0.00 0.00 3.79
2241 2496 3.202373 TCTTCAGAGATACTCCCTCCGAA 59.798 47.826 0.00 0.00 0.00 4.30
2242 2497 2.778270 TCTTCAGAGATACTCCCTCCGA 59.222 50.000 0.00 0.00 0.00 4.55
2243 2498 3.146066 CTCTTCAGAGATACTCCCTCCG 58.854 54.545 0.00 0.00 44.74 4.63
2244 2499 2.890945 GCTCTTCAGAGATACTCCCTCC 59.109 54.545 8.09 0.00 44.74 4.30
2245 2500 3.832527 AGCTCTTCAGAGATACTCCCTC 58.167 50.000 8.09 0.00 44.74 4.30
2246 2501 3.971468 AGCTCTTCAGAGATACTCCCT 57.029 47.619 8.09 0.00 44.74 4.20
2247 2502 6.664428 ATTAAGCTCTTCAGAGATACTCCC 57.336 41.667 8.09 0.00 44.74 4.30
2248 2503 6.861055 CGAATTAAGCTCTTCAGAGATACTCC 59.139 42.308 8.09 0.00 44.74 3.85
2249 2504 7.422399 ACGAATTAAGCTCTTCAGAGATACTC 58.578 38.462 8.09 0.00 44.74 2.59
2250 2505 7.341445 ACGAATTAAGCTCTTCAGAGATACT 57.659 36.000 8.09 0.00 44.74 2.12
2251 2506 7.995463 AACGAATTAAGCTCTTCAGAGATAC 57.005 36.000 8.09 0.00 44.74 2.24
2252 2507 8.251026 TGAAACGAATTAAGCTCTTCAGAGATA 58.749 33.333 8.09 0.00 44.74 1.98
2253 2508 7.099764 TGAAACGAATTAAGCTCTTCAGAGAT 58.900 34.615 8.09 0.00 44.74 2.75
2254 2509 6.455647 TGAAACGAATTAAGCTCTTCAGAGA 58.544 36.000 8.09 0.00 44.74 3.10
2269 2524 2.609350 GCATGCCACAATGAAACGAAT 58.391 42.857 6.36 0.00 0.00 3.34
2270 2525 1.336702 GGCATGCCACAATGAAACGAA 60.337 47.619 32.08 0.00 35.81 3.85
2271 2526 0.243365 GGCATGCCACAATGAAACGA 59.757 50.000 32.08 0.00 35.81 3.85
2273 2528 1.673626 CCAGGCATGCCACAATGAAAC 60.674 52.381 37.18 7.34 38.92 2.78
2291 2547 2.089980 GAGGTTGTCTAGTACGAGCCA 58.910 52.381 0.00 0.00 40.34 4.75
2322 2578 5.965922 AGTTTGGTAATCAGCATTTAAGGC 58.034 37.500 0.00 0.00 30.88 4.35
2362 2630 8.284945 AGTGAATAAACTGAATATGCACACAT 57.715 30.769 13.91 0.00 40.41 3.21
2364 2632 6.901887 CGAGTGAATAAACTGAATATGCACAC 59.098 38.462 13.91 9.12 40.41 3.82
2383 2651 6.822667 TGTACTATTACTGGAAACGAGTGA 57.177 37.500 0.00 0.00 0.00 3.41
2388 2656 7.061905 CACTGAGTTGTACTATTACTGGAAACG 59.938 40.741 0.00 0.00 0.00 3.60
2396 2664 7.337436 AGAGAGACCACTGAGTTGTACTATTAC 59.663 40.741 0.00 0.00 0.00 1.89
2409 2677 7.126061 TCCTTATAATCAAGAGAGACCACTGA 58.874 38.462 0.00 0.00 0.00 3.41
2412 2680 7.492994 GTGTTCCTTATAATCAAGAGAGACCAC 59.507 40.741 0.00 0.00 0.00 4.16
2428 2696 6.379133 TCGTAGACCTGTATTGTGTTCCTTAT 59.621 38.462 0.00 0.00 0.00 1.73
2432 2700 4.445452 TCGTAGACCTGTATTGTGTTCC 57.555 45.455 0.00 0.00 0.00 3.62
2446 2719 6.561614 TCAGTTCCTGATAACAATCGTAGAC 58.438 40.000 0.00 0.00 35.54 2.59
2448 2721 7.036220 AGTTCAGTTCCTGATAACAATCGTAG 58.964 38.462 0.00 0.00 40.39 3.51
2451 2724 6.727824 AAGTTCAGTTCCTGATAACAATCG 57.272 37.500 0.00 0.00 40.39 3.34
2453 2726 8.164070 AGGTAAAGTTCAGTTCCTGATAACAAT 58.836 33.333 0.00 0.00 40.39 2.71
2454 2727 7.514721 AGGTAAAGTTCAGTTCCTGATAACAA 58.485 34.615 0.00 0.00 40.39 2.83
2455 2728 7.074653 AGGTAAAGTTCAGTTCCTGATAACA 57.925 36.000 0.00 0.00 40.39 2.41
2456 2729 9.668497 ATTAGGTAAAGTTCAGTTCCTGATAAC 57.332 33.333 0.00 0.00 40.39 1.89
2458 2731 8.483758 GGATTAGGTAAAGTTCAGTTCCTGATA 58.516 37.037 0.00 0.00 40.39 2.15
2459 2732 7.182930 AGGATTAGGTAAAGTTCAGTTCCTGAT 59.817 37.037 0.00 0.00 40.39 2.90
2461 2734 6.712276 AGGATTAGGTAAAGTTCAGTTCCTG 58.288 40.000 0.00 0.00 0.00 3.86
2462 2735 6.954352 AGGATTAGGTAAAGTTCAGTTCCT 57.046 37.500 0.00 0.00 0.00 3.36
2463 2736 9.682465 AATAAGGATTAGGTAAAGTTCAGTTCC 57.318 33.333 0.00 0.00 31.76 3.62
2478 2756 6.049149 TCAACGAGAAGGCAATAAGGATTAG 58.951 40.000 0.00 0.00 31.76 1.73
2497 2775 4.178545 AGGAAGAAAAATGCCATCAACG 57.821 40.909 0.00 0.00 0.00 4.10
2729 3009 9.391227 AGGATCATCTTCTTCTCTTACCATTAT 57.609 33.333 0.00 0.00 0.00 1.28
2865 3146 5.248020 ACATGGGAAACAAATATGGCTGAAA 59.752 36.000 0.00 0.00 0.00 2.69
2916 3197 2.096335 TGAGTGCATGCAATCTTTAGCG 59.904 45.455 38.35 0.00 41.06 4.26
3098 3381 4.549458 CAATGGAAGTGCAAAACTACCAG 58.451 43.478 0.00 0.00 38.56 4.00
3279 3566 6.609616 AGTTTTGAAGGTTAGGTTCATTCCAA 59.390 34.615 0.00 0.00 33.95 3.53
3304 3591 1.885887 CCTTTCGACAAGGCATTCCAA 59.114 47.619 11.70 0.00 33.74 3.53
3324 3611 5.061311 GCAATGCAGTCATGATACAAAACAC 59.939 40.000 0.00 0.00 32.23 3.32
3351 3638 5.395546 CCTTTTATGATGGTTTGACCCATGG 60.396 44.000 4.14 4.14 45.31 3.66
3380 3668 4.881273 ACAGATCTGCATATAAACGGCAAA 59.119 37.500 22.83 0.00 37.06 3.68
3382 3670 4.058124 GACAGATCTGCATATAAACGGCA 58.942 43.478 22.83 0.00 35.96 5.69
3444 3732 2.662596 CGCCTCCAGCTACACCAA 59.337 61.111 0.00 0.00 40.39 3.67
3602 3898 2.846371 CCAACTGAGGCTGCACTAC 58.154 57.895 0.50 0.00 0.00 2.73
3622 4043 7.279615 CCTAATACATACACTGGGTTTGATCA 58.720 38.462 7.50 0.00 33.30 2.92
3625 4046 5.433526 GCCTAATACATACACTGGGTTTGA 58.566 41.667 7.50 0.00 33.30 2.69
3686 4107 4.137116 ACAGTAGAAGACAACAAGCACA 57.863 40.909 0.00 0.00 0.00 4.57
3688 4109 5.068591 TCAGTACAGTAGAAGACAACAAGCA 59.931 40.000 0.00 0.00 0.00 3.91
3731 4155 7.414873 CCATGATGGAAAGTCACACTCTTATTG 60.415 40.741 5.27 0.00 40.96 1.90
3849 4283 8.579006 AGCATTCACAACTGAATCTTATGAAAA 58.421 29.630 0.00 0.00 44.04 2.29
4265 4699 3.820467 AGAATTCGAATGCCTTTGTGACA 59.180 39.130 12.25 0.00 0.00 3.58
4302 4777 4.078980 ACTCAATGGAAAGGGATTATGCCT 60.079 41.667 0.00 0.00 41.29 4.75
4310 4785 4.415512 CCCCTATAACTCAATGGAAAGGGA 59.584 45.833 5.64 0.00 44.39 4.20
4367 4870 3.658398 CACCTGTGCTGGATTTCCT 57.342 52.632 2.07 0.00 36.82 3.36
4417 4926 1.754436 TTTGGTGTCGCGTCGTGTTC 61.754 55.000 5.77 1.67 0.00 3.18
4425 4934 1.086696 AGATGGATTTTGGTGTCGCG 58.913 50.000 0.00 0.00 0.00 5.87
4426 4935 3.251004 GGATAGATGGATTTTGGTGTCGC 59.749 47.826 0.00 0.00 0.00 5.19
4461 4970 3.512516 GCTCCTGCATGGGCGTTC 61.513 66.667 0.00 0.00 45.35 3.95
4512 5022 3.458044 AGTCCTGATACCTGTGAGTGA 57.542 47.619 0.00 0.00 0.00 3.41
4531 5041 3.146847 GGTCTTGTGTTCCTGGGTTTAG 58.853 50.000 0.00 0.00 0.00 1.85
4546 5056 5.828299 TTTTGTTTCAGTAGGTGGTCTTG 57.172 39.130 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.