Multiple sequence alignment - TraesCS3A01G233100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G233100 chr3A 100.000 3445 0 0 1 3445 435773307 435776751 0 6362
1 TraesCS3A01G233100 chr3A 95.427 656 25 5 2795 3445 649848534 649849189 0 1040
2 TraesCS3A01G233100 chr3D 93.266 1678 73 20 1 1652 299927825 299926162 0 2436
3 TraesCS3A01G233100 chr3D 94.405 983 35 7 1723 2688 299926162 299925183 0 1493
4 TraesCS3A01G233100 chr3B 90.855 1684 105 22 1 1652 421213052 421214718 0 2211
5 TraesCS3A01G233100 chr3B 94.922 965 25 8 1740 2688 421214743 421215699 0 1489
6 TraesCS3A01G233100 chr4A 95.738 657 23 5 2793 3445 580287668 580287013 0 1053
7 TraesCS3A01G233100 chr4A 95.552 652 23 6 2798 3445 626530678 626530029 0 1038
8 TraesCS3A01G233100 chr7A 95.846 650 23 4 2800 3445 731565381 731564732 0 1048
9 TraesCS3A01G233100 chr5A 95.579 656 24 5 2794 3445 338927001 338927655 0 1046
10 TraesCS3A01G233100 chr5A 95.552 652 26 3 2797 3445 697709444 697708793 0 1040
11 TraesCS3A01G233100 chr2A 95.712 653 23 5 2797 3445 744893930 744894581 0 1046
12 TraesCS3A01G233100 chr2A 95.686 649 23 5 2800 3445 79466478 79465832 0 1038
13 TraesCS3A01G233100 chr1A 95.566 654 25 4 2795 3445 98988002 98988654 0 1044


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G233100 chr3A 435773307 435776751 3444 False 6362.0 6362 100.0000 1 3445 1 chr3A.!!$F1 3444
1 TraesCS3A01G233100 chr3A 649848534 649849189 655 False 1040.0 1040 95.4270 2795 3445 1 chr3A.!!$F2 650
2 TraesCS3A01G233100 chr3D 299925183 299927825 2642 True 1964.5 2436 93.8355 1 2688 2 chr3D.!!$R1 2687
3 TraesCS3A01G233100 chr3B 421213052 421215699 2647 False 1850.0 2211 92.8885 1 2688 2 chr3B.!!$F1 2687
4 TraesCS3A01G233100 chr4A 580287013 580287668 655 True 1053.0 1053 95.7380 2793 3445 1 chr4A.!!$R1 652
5 TraesCS3A01G233100 chr4A 626530029 626530678 649 True 1038.0 1038 95.5520 2798 3445 1 chr4A.!!$R2 647
6 TraesCS3A01G233100 chr7A 731564732 731565381 649 True 1048.0 1048 95.8460 2800 3445 1 chr7A.!!$R1 645
7 TraesCS3A01G233100 chr5A 338927001 338927655 654 False 1046.0 1046 95.5790 2794 3445 1 chr5A.!!$F1 651
8 TraesCS3A01G233100 chr5A 697708793 697709444 651 True 1040.0 1040 95.5520 2797 3445 1 chr5A.!!$R1 648
9 TraesCS3A01G233100 chr2A 744893930 744894581 651 False 1046.0 1046 95.7120 2797 3445 1 chr2A.!!$F1 648
10 TraesCS3A01G233100 chr2A 79465832 79466478 646 True 1038.0 1038 95.6860 2800 3445 1 chr2A.!!$R1 645
11 TraesCS3A01G233100 chr1A 98988002 98988654 652 False 1044.0 1044 95.5660 2795 3445 1 chr1A.!!$F1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 297 0.335019 GAGGCAGGGGTATTTGGGTT 59.665 55.0 0.0 0.0 0.0 4.11 F
1811 1861 0.381089 CGCCCGTTCTCTTCGAGTAT 59.619 55.0 0.0 0.0 0.0 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 2300 0.469070 GAGATGAGCACCAGCCTCAT 59.531 55.0 3.75 3.75 43.56 2.90 R
2614 2679 0.535335 GTCGACCAAGCCATCACCTA 59.465 55.0 3.51 0.00 0.00 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 175 3.952675 CCGTGCAACAACAGCGCT 61.953 61.111 2.64 2.64 40.20 5.92
272 279 2.575735 TCCATCATGGCTTACAAGGTGA 59.424 45.455 0.00 0.00 37.47 4.02
285 292 1.005924 CAAGGTGAGGCAGGGGTATTT 59.994 52.381 0.00 0.00 0.00 1.40
290 297 0.335019 GAGGCAGGGGTATTTGGGTT 59.665 55.000 0.00 0.00 0.00 4.11
339 346 1.338200 CGGTAGCTCAACAGGCTCTTT 60.338 52.381 0.00 0.00 40.74 2.52
340 347 2.079925 GGTAGCTCAACAGGCTCTTTG 58.920 52.381 0.00 0.00 40.74 2.77
344 351 2.106511 AGCTCAACAGGCTCTTTGGTTA 59.893 45.455 5.72 0.00 34.70 2.85
404 414 2.809601 GTTGCGGCGATGTCGTCT 60.810 61.111 12.98 0.00 42.59 4.18
408 418 2.178273 CGGCGATGTCGTCTGTGA 59.822 61.111 0.00 0.00 42.59 3.58
452 462 4.812476 CTTCGCGCCGGTGATGGA 62.812 66.667 21.76 9.56 31.66 3.41
533 546 2.125673 CGTCCCCGCCTACACTTG 60.126 66.667 0.00 0.00 0.00 3.16
534 547 2.267961 GTCCCCGCCTACACTTGG 59.732 66.667 0.00 0.00 0.00 3.61
545 560 4.679639 CGCCTACACTTGGAGCAATTAGTA 60.680 45.833 0.00 0.00 0.00 1.82
580 595 4.816385 CCAATTAGCACTTATCATCGGTGT 59.184 41.667 0.00 0.00 33.96 4.16
581 596 5.296780 CCAATTAGCACTTATCATCGGTGTT 59.703 40.000 0.00 0.00 33.96 3.32
582 597 6.183360 CCAATTAGCACTTATCATCGGTGTTT 60.183 38.462 0.00 0.00 33.96 2.83
583 598 6.604735 ATTAGCACTTATCATCGGTGTTTC 57.395 37.500 0.00 0.00 33.96 2.78
614 631 0.597568 CTGCCAATTTTCTGGTGCGA 59.402 50.000 0.00 0.00 38.86 5.10
625 642 5.697473 TTTCTGGTGCGATGATTTTTACA 57.303 34.783 0.00 0.00 0.00 2.41
628 645 4.517075 TCTGGTGCGATGATTTTTACAACA 59.483 37.500 0.00 0.00 0.00 3.33
669 686 2.489329 GCTGCTAATGACATTGTGGTGT 59.511 45.455 11.05 0.00 34.39 4.16
706 743 2.135139 GCAGACTTCACATTCGACACA 58.865 47.619 0.00 0.00 0.00 3.72
710 747 4.033932 CAGACTTCACATTCGACACAAACA 59.966 41.667 0.00 0.00 0.00 2.83
751 788 1.515020 CCCGGAGAGCAGAGAACAG 59.485 63.158 0.73 0.00 0.00 3.16
793 830 5.969435 TCATGTACGTAGAATAAAGTGAGCG 59.031 40.000 0.00 0.00 0.00 5.03
815 852 4.561734 CGGAGCCCTATAAAACATCTCTCC 60.562 50.000 0.00 0.00 35.48 3.71
1392 1429 2.415608 CCTCTACTTCCTCGCCGCA 61.416 63.158 0.00 0.00 0.00 5.69
1612 1652 5.172687 AGGACTCTGGAAATCCTCTTTTC 57.827 43.478 0.44 0.00 38.55 2.29
1621 1661 8.981659 TCTGGAAATCCTCTTTTCTTTTCTTTT 58.018 29.630 0.44 0.00 36.17 2.27
1622 1662 9.254133 CTGGAAATCCTCTTTTCTTTTCTTTTC 57.746 33.333 0.44 0.00 36.17 2.29
1623 1663 8.981659 TGGAAATCCTCTTTTCTTTTCTTTTCT 58.018 29.630 0.44 0.00 36.17 2.52
1624 1664 9.469807 GGAAATCCTCTTTTCTTTTCTTTTCTC 57.530 33.333 0.00 0.00 36.17 2.87
1627 1667 8.759481 ATCCTCTTTTCTTTTCTTTTCTCTGT 57.241 30.769 0.00 0.00 0.00 3.41
1628 1668 9.853177 ATCCTCTTTTCTTTTCTTTTCTCTGTA 57.147 29.630 0.00 0.00 0.00 2.74
1652 1692 1.226746 AACAGCACTAACCTTGACGC 58.773 50.000 0.00 0.00 0.00 5.19
1653 1693 0.393077 ACAGCACTAACCTTGACGCT 59.607 50.000 0.00 0.00 0.00 5.07
1654 1694 1.071605 CAGCACTAACCTTGACGCTC 58.928 55.000 0.00 0.00 0.00 5.03
1655 1695 0.969894 AGCACTAACCTTGACGCTCT 59.030 50.000 0.00 0.00 0.00 4.09
1656 1696 1.344763 AGCACTAACCTTGACGCTCTT 59.655 47.619 0.00 0.00 0.00 2.85
1657 1697 1.727335 GCACTAACCTTGACGCTCTTC 59.273 52.381 0.00 0.00 0.00 2.87
1658 1698 1.986378 CACTAACCTTGACGCTCTTCG 59.014 52.381 0.00 0.00 45.38 3.79
1672 1712 5.696260 CGCTCTTCGTATTACATTTCACA 57.304 39.130 0.00 0.00 0.00 3.58
1673 1713 5.718246 CGCTCTTCGTATTACATTTCACAG 58.282 41.667 0.00 0.00 0.00 3.66
1674 1714 5.493735 GCTCTTCGTATTACATTTCACAGC 58.506 41.667 0.00 0.00 0.00 4.40
1675 1715 5.696260 TCTTCGTATTACATTTCACAGCG 57.304 39.130 0.00 0.00 0.00 5.18
1676 1716 4.565166 TCTTCGTATTACATTTCACAGCGG 59.435 41.667 0.00 0.00 0.00 5.52
1677 1717 3.852286 TCGTATTACATTTCACAGCGGT 58.148 40.909 0.00 0.00 0.00 5.68
1678 1718 4.247258 TCGTATTACATTTCACAGCGGTT 58.753 39.130 0.00 0.00 0.00 4.44
1679 1719 5.409211 TCGTATTACATTTCACAGCGGTTA 58.591 37.500 0.00 0.00 0.00 2.85
1680 1720 6.044046 TCGTATTACATTTCACAGCGGTTAT 58.956 36.000 0.00 0.00 0.00 1.89
1681 1721 6.535865 TCGTATTACATTTCACAGCGGTTATT 59.464 34.615 0.00 0.00 0.00 1.40
1682 1722 7.705752 TCGTATTACATTTCACAGCGGTTATTA 59.294 33.333 0.00 0.00 0.00 0.98
1683 1723 8.492748 CGTATTACATTTCACAGCGGTTATTAT 58.507 33.333 0.00 0.00 0.00 1.28
1686 1726 6.751514 ACATTTCACAGCGGTTATTATTCA 57.248 33.333 0.00 0.00 0.00 2.57
1687 1727 7.333528 ACATTTCACAGCGGTTATTATTCAT 57.666 32.000 0.00 0.00 0.00 2.57
1688 1728 7.417612 ACATTTCACAGCGGTTATTATTCATC 58.582 34.615 0.00 0.00 0.00 2.92
1689 1729 7.283127 ACATTTCACAGCGGTTATTATTCATCT 59.717 33.333 0.00 0.00 0.00 2.90
1690 1730 6.603237 TTCACAGCGGTTATTATTCATCTG 57.397 37.500 0.00 0.00 0.00 2.90
1691 1731 5.912892 TCACAGCGGTTATTATTCATCTGA 58.087 37.500 0.00 0.00 0.00 3.27
1692 1732 6.524734 TCACAGCGGTTATTATTCATCTGAT 58.475 36.000 0.00 0.00 0.00 2.90
1693 1733 6.992123 TCACAGCGGTTATTATTCATCTGATT 59.008 34.615 0.00 0.00 0.00 2.57
1694 1734 7.041848 TCACAGCGGTTATTATTCATCTGATTG 60.042 37.037 0.00 0.00 0.00 2.67
1695 1735 6.767902 ACAGCGGTTATTATTCATCTGATTGT 59.232 34.615 0.00 0.00 0.00 2.71
1696 1736 7.283127 ACAGCGGTTATTATTCATCTGATTGTT 59.717 33.333 0.00 0.00 0.00 2.83
1697 1737 8.131100 CAGCGGTTATTATTCATCTGATTGTTT 58.869 33.333 0.00 0.00 0.00 2.83
1698 1738 8.686334 AGCGGTTATTATTCATCTGATTGTTTT 58.314 29.630 0.00 0.00 0.00 2.43
1699 1739 8.745837 GCGGTTATTATTCATCTGATTGTTTTG 58.254 33.333 0.00 0.00 0.00 2.44
1700 1740 9.787532 CGGTTATTATTCATCTGATTGTTTTGT 57.212 29.630 0.00 0.00 0.00 2.83
1709 1749 9.725019 TTCATCTGATTGTTTTGTAGATGTAGT 57.275 29.630 11.05 0.00 43.14 2.73
1712 1752 8.683550 TCTGATTGTTTTGTAGATGTAGTACG 57.316 34.615 0.00 0.00 0.00 3.67
1713 1753 8.517056 TCTGATTGTTTTGTAGATGTAGTACGA 58.483 33.333 0.00 0.00 0.00 3.43
1714 1754 9.302345 CTGATTGTTTTGTAGATGTAGTACGAT 57.698 33.333 0.00 0.00 0.00 3.73
1715 1755 9.647797 TGATTGTTTTGTAGATGTAGTACGATT 57.352 29.630 0.00 0.00 0.00 3.34
1735 1775 8.454293 ACGATTTAATCTGATGATGATACGTC 57.546 34.615 3.34 0.00 32.44 4.34
1811 1861 0.381089 CGCCCGTTCTCTTCGAGTAT 59.619 55.000 0.00 0.00 0.00 2.12
1829 1879 1.244697 ATCAGTCTGACACCGACGCT 61.245 55.000 10.88 0.00 36.53 5.07
2111 2161 2.983592 CGGGTGAAGTTGGTGGCC 60.984 66.667 0.00 0.00 0.00 5.36
2132 2182 1.229082 TGTGGACCTCTACGGGCTT 60.229 57.895 0.00 0.00 42.26 4.35
2399 2449 4.796231 GGCATCGCCGTGTCGTCT 62.796 66.667 0.00 0.00 39.62 4.18
2411 2461 1.583194 GTCGTCTACCTTCTCGCGC 60.583 63.158 0.00 0.00 0.00 6.86
2615 2680 4.215742 CGCTGGGGCCGTCGAATA 62.216 66.667 0.00 0.00 34.44 1.75
2622 2694 0.600255 GGGCCGTCGAATAGGTGATG 60.600 60.000 0.00 0.00 0.00 3.07
2633 2705 0.535335 TAGGTGATGGCTTGGTCGAC 59.465 55.000 7.13 7.13 0.00 4.20
2641 2713 2.805353 CTTGGTCGACGCGGACAG 60.805 66.667 12.47 0.00 38.70 3.51
2659 2731 2.034879 GGTGATGGCGTGAGTGTGG 61.035 63.158 0.00 0.00 0.00 4.17
2660 2732 1.301716 GTGATGGCGTGAGTGTGGT 60.302 57.895 0.00 0.00 0.00 4.16
2661 2733 0.884704 GTGATGGCGTGAGTGTGGTT 60.885 55.000 0.00 0.00 0.00 3.67
2684 2756 2.188817 AGATAAGGAGTGGTGTGTCCC 58.811 52.381 0.00 0.00 32.70 4.46
2688 2760 1.071471 GGAGTGGTGTGTCCCTGTG 59.929 63.158 0.00 0.00 34.77 3.66
2689 2761 1.598130 GAGTGGTGTGTCCCTGTGC 60.598 63.158 0.00 0.00 34.77 4.57
2690 2762 2.972505 GTGGTGTGTCCCTGTGCG 60.973 66.667 0.00 0.00 34.77 5.34
2691 2763 3.475494 TGGTGTGTCCCTGTGCGT 61.475 61.111 0.00 0.00 34.77 5.24
2692 2764 2.972505 GGTGTGTCCCTGTGCGTG 60.973 66.667 0.00 0.00 0.00 5.34
2693 2765 3.649986 GTGTGTCCCTGTGCGTGC 61.650 66.667 0.00 0.00 0.00 5.34
2694 2766 3.860605 TGTGTCCCTGTGCGTGCT 61.861 61.111 0.00 0.00 0.00 4.40
2695 2767 2.591715 GTGTCCCTGTGCGTGCTT 60.592 61.111 0.00 0.00 0.00 3.91
2696 2768 2.280797 TGTCCCTGTGCGTGCTTC 60.281 61.111 0.00 0.00 0.00 3.86
2697 2769 2.031163 GTCCCTGTGCGTGCTTCT 59.969 61.111 0.00 0.00 0.00 2.85
2698 2770 2.031012 TCCCTGTGCGTGCTTCTG 59.969 61.111 0.00 0.00 0.00 3.02
2699 2771 2.281070 CCCTGTGCGTGCTTCTGT 60.281 61.111 0.00 0.00 0.00 3.41
2700 2772 2.320587 CCCTGTGCGTGCTTCTGTC 61.321 63.158 0.00 0.00 0.00 3.51
2701 2773 1.595109 CCTGTGCGTGCTTCTGTCA 60.595 57.895 0.00 0.00 0.00 3.58
2702 2774 0.952497 CCTGTGCGTGCTTCTGTCAT 60.952 55.000 0.00 0.00 0.00 3.06
2703 2775 1.672737 CCTGTGCGTGCTTCTGTCATA 60.673 52.381 0.00 0.00 0.00 2.15
2704 2776 2.068519 CTGTGCGTGCTTCTGTCATAA 58.931 47.619 0.00 0.00 0.00 1.90
2705 2777 2.480037 CTGTGCGTGCTTCTGTCATAAA 59.520 45.455 0.00 0.00 0.00 1.40
2706 2778 3.073678 TGTGCGTGCTTCTGTCATAAAT 58.926 40.909 0.00 0.00 0.00 1.40
2707 2779 3.125146 TGTGCGTGCTTCTGTCATAAATC 59.875 43.478 0.00 0.00 0.00 2.17
2708 2780 2.677836 TGCGTGCTTCTGTCATAAATCC 59.322 45.455 0.00 0.00 0.00 3.01
2709 2781 2.285834 GCGTGCTTCTGTCATAAATCCG 60.286 50.000 0.00 0.00 0.00 4.18
2710 2782 2.285220 CGTGCTTCTGTCATAAATCCGG 59.715 50.000 0.00 0.00 0.00 5.14
2711 2783 3.270877 GTGCTTCTGTCATAAATCCGGT 58.729 45.455 0.00 0.00 0.00 5.28
2712 2784 4.439057 GTGCTTCTGTCATAAATCCGGTA 58.561 43.478 0.00 0.00 0.00 4.02
2713 2785 5.057149 GTGCTTCTGTCATAAATCCGGTAT 58.943 41.667 0.00 0.00 0.00 2.73
2714 2786 5.050091 GTGCTTCTGTCATAAATCCGGTATG 60.050 44.000 0.00 2.43 0.00 2.39
2715 2787 5.057149 GCTTCTGTCATAAATCCGGTATGT 58.943 41.667 0.00 0.00 31.96 2.29
2716 2788 6.183360 TGCTTCTGTCATAAATCCGGTATGTA 60.183 38.462 0.00 0.00 31.96 2.29
2717 2789 6.145696 GCTTCTGTCATAAATCCGGTATGTAC 59.854 42.308 0.00 4.19 31.96 2.90
2718 2790 6.092955 TCTGTCATAAATCCGGTATGTACC 57.907 41.667 0.00 0.00 42.98 3.34
2719 2791 5.836898 TCTGTCATAAATCCGGTATGTACCT 59.163 40.000 0.00 0.00 44.25 3.08
2720 2792 6.325545 TCTGTCATAAATCCGGTATGTACCTT 59.674 38.462 0.00 0.00 44.25 3.50
2721 2793 6.518493 TGTCATAAATCCGGTATGTACCTTC 58.482 40.000 0.00 0.00 44.25 3.46
2722 2794 6.325545 TGTCATAAATCCGGTATGTACCTTCT 59.674 38.462 0.00 0.00 44.25 2.85
2723 2795 6.867293 GTCATAAATCCGGTATGTACCTTCTC 59.133 42.308 0.00 0.00 44.25 2.87
2724 2796 6.781014 TCATAAATCCGGTATGTACCTTCTCT 59.219 38.462 0.00 0.00 44.25 3.10
2725 2797 7.946219 TCATAAATCCGGTATGTACCTTCTCTA 59.054 37.037 0.00 0.00 44.25 2.43
2726 2798 8.750298 CATAAATCCGGTATGTACCTTCTCTAT 58.250 37.037 0.00 0.00 44.25 1.98
2727 2799 6.837471 AATCCGGTATGTACCTTCTCTATC 57.163 41.667 0.00 0.00 44.25 2.08
2728 2800 5.579753 TCCGGTATGTACCTTCTCTATCT 57.420 43.478 0.00 0.00 44.25 1.98
2729 2801 5.558818 TCCGGTATGTACCTTCTCTATCTC 58.441 45.833 0.00 0.00 44.25 2.75
2730 2802 5.310068 TCCGGTATGTACCTTCTCTATCTCT 59.690 44.000 0.00 0.00 44.25 3.10
2731 2803 6.499699 TCCGGTATGTACCTTCTCTATCTCTA 59.500 42.308 0.00 0.00 44.25 2.43
2732 2804 7.016957 TCCGGTATGTACCTTCTCTATCTCTAA 59.983 40.741 0.00 0.00 44.25 2.10
2733 2805 7.334921 CCGGTATGTACCTTCTCTATCTCTAAG 59.665 44.444 7.56 0.00 44.25 2.18
2734 2806 8.095792 CGGTATGTACCTTCTCTATCTCTAAGA 58.904 40.741 7.56 0.00 44.25 2.10
2735 2807 9.796180 GGTATGTACCTTCTCTATCTCTAAGAA 57.204 37.037 1.92 0.00 43.10 2.52
2751 2823 8.488651 TCTCTAAGAAAAAGAAAAACGTCTGT 57.511 30.769 0.00 0.00 0.00 3.41
2752 2824 8.388103 TCTCTAAGAAAAAGAAAAACGTCTGTG 58.612 33.333 0.00 0.00 0.00 3.66
2753 2825 8.259049 TCTAAGAAAAAGAAAAACGTCTGTGA 57.741 30.769 0.00 0.00 0.00 3.58
2754 2826 8.723311 TCTAAGAAAAAGAAAAACGTCTGTGAA 58.277 29.630 0.00 0.00 0.00 3.18
2755 2827 7.562640 AAGAAAAAGAAAAACGTCTGTGAAC 57.437 32.000 0.00 0.00 0.00 3.18
2756 2828 6.090783 AGAAAAAGAAAAACGTCTGTGAACC 58.909 36.000 0.00 0.00 0.00 3.62
2757 2829 5.379732 AAAAGAAAAACGTCTGTGAACCA 57.620 34.783 0.00 0.00 0.00 3.67
2758 2830 5.379732 AAAGAAAAACGTCTGTGAACCAA 57.620 34.783 0.00 0.00 0.00 3.67
2759 2831 4.616181 AGAAAAACGTCTGTGAACCAAG 57.384 40.909 0.00 0.00 0.00 3.61
2760 2832 4.258543 AGAAAAACGTCTGTGAACCAAGA 58.741 39.130 0.00 0.00 0.00 3.02
2761 2833 4.332819 AGAAAAACGTCTGTGAACCAAGAG 59.667 41.667 0.00 0.00 0.00 2.85
2762 2834 3.536956 AAACGTCTGTGAACCAAGAGA 57.463 42.857 0.00 0.00 0.00 3.10
2763 2835 2.802787 ACGTCTGTGAACCAAGAGAG 57.197 50.000 0.00 0.00 0.00 3.20
2764 2836 2.307768 ACGTCTGTGAACCAAGAGAGA 58.692 47.619 0.00 0.00 0.00 3.10
2765 2837 2.693591 ACGTCTGTGAACCAAGAGAGAA 59.306 45.455 0.00 0.00 0.00 2.87
2766 2838 3.053455 CGTCTGTGAACCAAGAGAGAAC 58.947 50.000 0.00 0.00 0.00 3.01
2767 2839 3.243569 CGTCTGTGAACCAAGAGAGAACT 60.244 47.826 0.00 0.00 0.00 3.01
2768 2840 4.023107 CGTCTGTGAACCAAGAGAGAACTA 60.023 45.833 0.00 0.00 0.00 2.24
2769 2841 5.224135 GTCTGTGAACCAAGAGAGAACTAC 58.776 45.833 0.00 0.00 0.00 2.73
2770 2842 4.893524 TCTGTGAACCAAGAGAGAACTACA 59.106 41.667 0.00 0.00 0.00 2.74
2771 2843 5.010112 TCTGTGAACCAAGAGAGAACTACAG 59.990 44.000 0.00 0.00 34.65 2.74
2772 2844 4.649674 TGTGAACCAAGAGAGAACTACAGT 59.350 41.667 0.00 0.00 0.00 3.55
2773 2845 4.985409 GTGAACCAAGAGAGAACTACAGTG 59.015 45.833 0.00 0.00 0.00 3.66
2774 2846 3.669251 ACCAAGAGAGAACTACAGTGC 57.331 47.619 0.00 0.00 0.00 4.40
2775 2847 3.235200 ACCAAGAGAGAACTACAGTGCT 58.765 45.455 0.00 0.00 36.39 4.40
2776 2848 3.643792 ACCAAGAGAGAACTACAGTGCTT 59.356 43.478 0.00 0.00 33.02 3.91
2777 2849 4.101741 ACCAAGAGAGAACTACAGTGCTTT 59.898 41.667 0.00 0.00 33.02 3.51
2778 2850 5.304614 ACCAAGAGAGAACTACAGTGCTTTA 59.695 40.000 0.00 0.00 33.02 1.85
2779 2851 5.635700 CCAAGAGAGAACTACAGTGCTTTAC 59.364 44.000 0.00 0.00 33.02 2.01
2780 2852 5.394224 AGAGAGAACTACAGTGCTTTACC 57.606 43.478 0.00 0.00 33.02 2.85
2781 2853 4.833380 AGAGAGAACTACAGTGCTTTACCA 59.167 41.667 0.00 0.00 33.02 3.25
2782 2854 5.482175 AGAGAGAACTACAGTGCTTTACCAT 59.518 40.000 0.00 0.00 33.02 3.55
2783 2855 5.482908 AGAGAACTACAGTGCTTTACCATG 58.517 41.667 0.00 0.00 33.02 3.66
2784 2856 4.003648 AGAACTACAGTGCTTTACCATGC 58.996 43.478 0.00 0.00 26.38 4.06
2785 2857 3.417069 ACTACAGTGCTTTACCATGCA 57.583 42.857 0.00 0.00 36.79 3.96
2786 2858 3.750371 ACTACAGTGCTTTACCATGCAA 58.250 40.909 0.00 0.00 41.10 4.08
2787 2859 4.141287 ACTACAGTGCTTTACCATGCAAA 58.859 39.130 0.00 0.00 41.10 3.68
2788 2860 4.582656 ACTACAGTGCTTTACCATGCAAAA 59.417 37.500 0.00 0.00 41.10 2.44
2789 2861 4.399004 ACAGTGCTTTACCATGCAAAAA 57.601 36.364 0.00 0.00 41.10 1.94
2899 2974 1.683011 CCCCAGGATGCTGAAAATCGT 60.683 52.381 16.85 0.00 31.97 3.73
3124 3202 0.472925 TAGATAGCCATTCCCCGCCA 60.473 55.000 0.00 0.00 0.00 5.69
3136 3214 0.394352 CCCCGCCAGAAAATAGCAGT 60.394 55.000 0.00 0.00 0.00 4.40
3179 3258 3.958860 AGCAGCTGGGCGTTTCCT 61.959 61.111 17.12 0.00 39.27 3.36
3394 3475 1.609208 ACTGGCGAGCAATGAAAAGT 58.391 45.000 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 175 2.016393 CTATTCGAGTGCTGGGGCGA 62.016 60.000 0.00 0.00 42.25 5.54
203 210 0.322648 AAGTACAACACCGCCCTACC 59.677 55.000 0.00 0.00 0.00 3.18
205 212 1.636148 AGAAGTACAACACCGCCCTA 58.364 50.000 0.00 0.00 0.00 3.53
272 279 1.688750 TAACCCAAATACCCCTGCCT 58.311 50.000 0.00 0.00 0.00 4.75
285 292 3.427425 GCGCACGTGCATAACCCA 61.427 61.111 37.03 0.00 42.21 4.51
322 329 1.699634 ACCAAAGAGCCTGTTGAGCTA 59.300 47.619 0.00 0.00 41.75 3.32
339 346 1.490490 GGCATCATCTGGGAGTAACCA 59.510 52.381 0.00 0.00 41.20 3.67
340 347 1.490490 TGGCATCATCTGGGAGTAACC 59.510 52.381 0.00 0.00 38.08 2.85
344 351 0.835941 GTCTGGCATCATCTGGGAGT 59.164 55.000 0.00 0.00 0.00 3.85
404 414 1.003839 GCGTCCAAGGACCATCACA 60.004 57.895 13.35 0.00 41.76 3.58
408 418 2.045926 GCTGCGTCCAAGGACCAT 60.046 61.111 13.35 0.00 41.76 3.55
475 485 4.647615 CCCGATCGCCACGCCTAG 62.648 72.222 10.32 0.00 0.00 3.02
493 506 3.985019 TTACTTCACTAATTGCCCCGA 57.015 42.857 0.00 0.00 0.00 5.14
497 510 4.495844 GGACGCATTACTTCACTAATTGCC 60.496 45.833 0.00 0.00 0.00 4.52
525 538 7.907214 ACTTTACTAATTGCTCCAAGTGTAG 57.093 36.000 0.00 0.00 0.00 2.74
526 539 9.953565 ATTACTTTACTAATTGCTCCAAGTGTA 57.046 29.630 0.00 0.00 0.00 2.90
527 540 8.863872 ATTACTTTACTAATTGCTCCAAGTGT 57.136 30.769 0.00 0.00 0.00 3.55
528 541 8.946085 TGATTACTTTACTAATTGCTCCAAGTG 58.054 33.333 0.00 0.00 0.00 3.16
532 545 8.736244 GGTTTGATTACTTTACTAATTGCTCCA 58.264 33.333 0.00 0.00 0.00 3.86
533 546 8.736244 TGGTTTGATTACTTTACTAATTGCTCC 58.264 33.333 0.00 0.00 0.00 4.70
592 607 1.340889 GCACCAGAAAATTGGCAGTGA 59.659 47.619 0.00 0.00 42.18 3.41
594 609 0.314935 CGCACCAGAAAATTGGCAGT 59.685 50.000 0.00 0.00 42.18 4.40
595 610 0.597568 TCGCACCAGAAAATTGGCAG 59.402 50.000 0.00 0.00 42.18 4.85
598 613 3.788333 ATCATCGCACCAGAAAATTGG 57.212 42.857 0.00 0.00 44.09 3.16
625 642 6.597280 AGCAAACCAACACATTACATTTTGTT 59.403 30.769 0.00 0.00 32.34 2.83
628 645 5.007528 GCAGCAAACCAACACATTACATTTT 59.992 36.000 0.00 0.00 0.00 1.82
641 658 4.039004 ACAATGTCATTAGCAGCAAACCAA 59.961 37.500 0.00 0.00 0.00 3.67
684 701 2.543848 GTGTCGAATGTGAAGTCTGCAA 59.456 45.455 0.00 0.00 0.00 4.08
689 706 4.530094 TGTTTGTGTCGAATGTGAAGTC 57.470 40.909 0.00 0.00 0.00 3.01
691 708 6.810888 AAATTGTTTGTGTCGAATGTGAAG 57.189 33.333 0.00 0.00 0.00 3.02
692 709 7.971168 ACTAAAATTGTTTGTGTCGAATGTGAA 59.029 29.630 0.00 0.00 0.00 3.18
706 743 4.279671 TGCGTGATCCCACTAAAATTGTTT 59.720 37.500 0.00 0.00 41.06 2.83
710 747 2.752903 GGTGCGTGATCCCACTAAAATT 59.247 45.455 7.80 0.00 41.06 1.82
768 805 6.471198 CGCTCACTTTATTCTACGTACATGAA 59.529 38.462 0.00 0.00 0.00 2.57
773 810 4.913376 TCCGCTCACTTTATTCTACGTAC 58.087 43.478 0.00 0.00 0.00 3.67
774 811 4.497006 GCTCCGCTCACTTTATTCTACGTA 60.497 45.833 0.00 0.00 0.00 3.57
775 812 3.734293 GCTCCGCTCACTTTATTCTACGT 60.734 47.826 0.00 0.00 0.00 3.57
776 813 2.789893 GCTCCGCTCACTTTATTCTACG 59.210 50.000 0.00 0.00 0.00 3.51
793 830 4.595350 AGGAGAGATGTTTTATAGGGCTCC 59.405 45.833 0.00 0.00 39.65 4.70
815 852 3.423539 TTCTTGTGGACAGGGATGAAG 57.576 47.619 0.00 0.00 0.00 3.02
1362 1399 1.829096 GTAGAGGTCCTCTCCCGGC 60.829 68.421 25.21 7.93 43.44 6.13
1392 1429 2.366167 AGGAAGGAGCTGCCGGAT 60.366 61.111 5.05 0.00 43.43 4.18
1652 1692 5.276395 CCGCTGTGAAATGTAATACGAAGAG 60.276 44.000 0.00 0.00 0.00 2.85
1653 1693 4.565166 CCGCTGTGAAATGTAATACGAAGA 59.435 41.667 0.00 0.00 0.00 2.87
1654 1694 4.328983 ACCGCTGTGAAATGTAATACGAAG 59.671 41.667 0.00 0.00 0.00 3.79
1655 1695 4.247258 ACCGCTGTGAAATGTAATACGAA 58.753 39.130 0.00 0.00 0.00 3.85
1656 1696 3.852286 ACCGCTGTGAAATGTAATACGA 58.148 40.909 0.00 0.00 0.00 3.43
1657 1697 4.593597 AACCGCTGTGAAATGTAATACG 57.406 40.909 0.00 0.00 0.00 3.06
1660 1700 8.898761 TGAATAATAACCGCTGTGAAATGTAAT 58.101 29.630 0.00 0.00 0.00 1.89
1661 1701 8.270080 TGAATAATAACCGCTGTGAAATGTAA 57.730 30.769 0.00 0.00 0.00 2.41
1662 1702 7.851387 TGAATAATAACCGCTGTGAAATGTA 57.149 32.000 0.00 0.00 0.00 2.29
1663 1703 6.751514 TGAATAATAACCGCTGTGAAATGT 57.248 33.333 0.00 0.00 0.00 2.71
1664 1704 7.588854 CAGATGAATAATAACCGCTGTGAAATG 59.411 37.037 0.00 0.00 0.00 2.32
1665 1705 7.498900 TCAGATGAATAATAACCGCTGTGAAAT 59.501 33.333 0.00 0.00 0.00 2.17
1666 1706 6.821160 TCAGATGAATAATAACCGCTGTGAAA 59.179 34.615 0.00 0.00 0.00 2.69
1667 1707 6.345298 TCAGATGAATAATAACCGCTGTGAA 58.655 36.000 0.00 0.00 0.00 3.18
1668 1708 5.912892 TCAGATGAATAATAACCGCTGTGA 58.087 37.500 0.00 0.00 0.00 3.58
1669 1709 6.791887 ATCAGATGAATAATAACCGCTGTG 57.208 37.500 0.00 0.00 0.00 3.66
1670 1710 6.767902 ACAATCAGATGAATAATAACCGCTGT 59.232 34.615 0.00 0.00 0.00 4.40
1671 1711 7.194607 ACAATCAGATGAATAATAACCGCTG 57.805 36.000 0.00 0.00 0.00 5.18
1672 1712 7.807977 AACAATCAGATGAATAATAACCGCT 57.192 32.000 0.00 0.00 0.00 5.52
1673 1713 8.745837 CAAAACAATCAGATGAATAATAACCGC 58.254 33.333 0.00 0.00 0.00 5.68
1674 1714 9.787532 ACAAAACAATCAGATGAATAATAACCG 57.212 29.630 0.00 0.00 0.00 4.44
1683 1723 9.725019 ACTACATCTACAAAACAATCAGATGAA 57.275 29.630 14.87 0.00 43.37 2.57
1686 1726 9.302345 CGTACTACATCTACAAAACAATCAGAT 57.698 33.333 0.00 0.00 0.00 2.90
1687 1727 8.517056 TCGTACTACATCTACAAAACAATCAGA 58.483 33.333 0.00 0.00 0.00 3.27
1688 1728 8.683550 TCGTACTACATCTACAAAACAATCAG 57.316 34.615 0.00 0.00 0.00 2.90
1689 1729 9.647797 AATCGTACTACATCTACAAAACAATCA 57.352 29.630 0.00 0.00 0.00 2.57
1707 1747 9.561270 CGTATCATCATCAGATTAAATCGTACT 57.439 33.333 0.00 0.00 30.20 2.73
1708 1748 9.343103 ACGTATCATCATCAGATTAAATCGTAC 57.657 33.333 0.00 0.00 30.20 3.67
1709 1749 9.556030 GACGTATCATCATCAGATTAAATCGTA 57.444 33.333 0.00 0.00 30.20 3.43
1710 1750 8.300286 AGACGTATCATCATCAGATTAAATCGT 58.700 33.333 0.00 0.00 30.20 3.73
1711 1751 8.680707 AGACGTATCATCATCAGATTAAATCG 57.319 34.615 0.00 0.00 30.20 3.34
1712 1752 9.631452 TGAGACGTATCATCATCAGATTAAATC 57.369 33.333 9.19 0.00 30.20 2.17
1811 1861 1.452953 AAGCGTCGGTGTCAGACTGA 61.453 55.000 0.00 0.00 37.65 3.41
1829 1879 2.268920 GCCTCCGATGACTGCCAA 59.731 61.111 0.00 0.00 0.00 4.52
2250 2300 0.469070 GAGATGAGCACCAGCCTCAT 59.531 55.000 3.75 3.75 43.56 2.90
2399 2449 2.415608 CCAGAGGCGCGAGAAGGTA 61.416 63.158 12.10 0.00 0.00 3.08
2613 2678 1.139058 GTCGACCAAGCCATCACCTAT 59.861 52.381 3.51 0.00 0.00 2.57
2614 2679 0.535335 GTCGACCAAGCCATCACCTA 59.465 55.000 3.51 0.00 0.00 3.08
2615 2680 1.296715 GTCGACCAAGCCATCACCT 59.703 57.895 3.51 0.00 0.00 4.00
2641 2713 2.034879 CCACACTCACGCCATCACC 61.035 63.158 0.00 0.00 0.00 4.02
2659 2731 5.642491 GGACACACCACTCCTTATCTAAAAC 59.358 44.000 0.00 0.00 38.79 2.43
2660 2732 5.280317 GGGACACACCACTCCTTATCTAAAA 60.280 44.000 0.00 0.00 41.20 1.52
2661 2733 4.224370 GGGACACACCACTCCTTATCTAAA 59.776 45.833 0.00 0.00 41.20 1.85
2684 2756 1.713597 TATGACAGAAGCACGCACAG 58.286 50.000 0.00 0.00 0.00 3.66
2688 2760 2.285834 CGGATTTATGACAGAAGCACGC 60.286 50.000 0.00 0.00 0.00 5.34
2689 2761 2.285220 CCGGATTTATGACAGAAGCACG 59.715 50.000 0.00 0.00 0.00 5.34
2690 2762 3.270877 ACCGGATTTATGACAGAAGCAC 58.729 45.455 9.46 0.00 0.00 4.40
2691 2763 3.627395 ACCGGATTTATGACAGAAGCA 57.373 42.857 9.46 0.00 0.00 3.91
2692 2764 5.057149 ACATACCGGATTTATGACAGAAGC 58.943 41.667 9.46 0.00 32.22 3.86
2693 2765 6.645415 GGTACATACCGGATTTATGACAGAAG 59.355 42.308 9.46 0.00 36.50 2.85
2694 2766 6.518493 GGTACATACCGGATTTATGACAGAA 58.482 40.000 9.46 0.00 36.50 3.02
2695 2767 6.092955 GGTACATACCGGATTTATGACAGA 57.907 41.667 9.46 0.00 36.50 3.41
2709 2781 9.796180 TTCTTAGAGATAGAGAAGGTACATACC 57.204 37.037 0.00 0.00 46.82 2.73
2725 2797 9.110502 ACAGACGTTTTTCTTTTTCTTAGAGAT 57.889 29.630 0.00 0.00 0.00 2.75
2726 2798 8.388103 CACAGACGTTTTTCTTTTTCTTAGAGA 58.612 33.333 0.00 0.00 0.00 3.10
2727 2799 8.388103 TCACAGACGTTTTTCTTTTTCTTAGAG 58.612 33.333 0.00 0.00 0.00 2.43
2728 2800 8.259049 TCACAGACGTTTTTCTTTTTCTTAGA 57.741 30.769 0.00 0.00 0.00 2.10
2729 2801 8.786028 GTTCACAGACGTTTTTCTTTTTCTTAG 58.214 33.333 0.00 0.00 0.00 2.18
2730 2802 7.751793 GGTTCACAGACGTTTTTCTTTTTCTTA 59.248 33.333 0.00 0.00 0.00 2.10
2731 2803 6.584942 GGTTCACAGACGTTTTTCTTTTTCTT 59.415 34.615 0.00 0.00 0.00 2.52
2732 2804 6.090783 GGTTCACAGACGTTTTTCTTTTTCT 58.909 36.000 0.00 0.00 0.00 2.52
2733 2805 5.859648 TGGTTCACAGACGTTTTTCTTTTTC 59.140 36.000 0.00 0.00 0.00 2.29
2734 2806 5.774630 TGGTTCACAGACGTTTTTCTTTTT 58.225 33.333 0.00 0.00 0.00 1.94
2735 2807 5.379732 TGGTTCACAGACGTTTTTCTTTT 57.620 34.783 0.00 0.00 0.00 2.27
2736 2808 5.182380 TCTTGGTTCACAGACGTTTTTCTTT 59.818 36.000 0.00 0.00 0.00 2.52
2737 2809 4.698304 TCTTGGTTCACAGACGTTTTTCTT 59.302 37.500 0.00 0.00 0.00 2.52
2738 2810 4.258543 TCTTGGTTCACAGACGTTTTTCT 58.741 39.130 0.00 0.00 0.00 2.52
2739 2811 4.331717 TCTCTTGGTTCACAGACGTTTTTC 59.668 41.667 0.00 0.00 0.00 2.29
2740 2812 4.258543 TCTCTTGGTTCACAGACGTTTTT 58.741 39.130 0.00 0.00 0.00 1.94
2741 2813 3.869065 TCTCTTGGTTCACAGACGTTTT 58.131 40.909 0.00 0.00 0.00 2.43
2742 2814 3.132289 TCTCTCTTGGTTCACAGACGTTT 59.868 43.478 0.00 0.00 0.00 3.60
2743 2815 2.693591 TCTCTCTTGGTTCACAGACGTT 59.306 45.455 0.00 0.00 0.00 3.99
2744 2816 2.307768 TCTCTCTTGGTTCACAGACGT 58.692 47.619 0.00 0.00 0.00 4.34
2745 2817 3.053455 GTTCTCTCTTGGTTCACAGACG 58.947 50.000 0.00 0.00 0.00 4.18
2746 2818 4.329462 AGTTCTCTCTTGGTTCACAGAC 57.671 45.455 0.00 0.00 0.00 3.51
2747 2819 4.893524 TGTAGTTCTCTCTTGGTTCACAGA 59.106 41.667 0.00 0.00 0.00 3.41
2748 2820 5.201713 TGTAGTTCTCTCTTGGTTCACAG 57.798 43.478 0.00 0.00 0.00 3.66
2749 2821 4.649674 ACTGTAGTTCTCTCTTGGTTCACA 59.350 41.667 0.00 0.00 0.00 3.58
2750 2822 4.985409 CACTGTAGTTCTCTCTTGGTTCAC 59.015 45.833 0.00 0.00 0.00 3.18
2751 2823 4.501571 GCACTGTAGTTCTCTCTTGGTTCA 60.502 45.833 0.00 0.00 0.00 3.18
2752 2824 3.991121 GCACTGTAGTTCTCTCTTGGTTC 59.009 47.826 0.00 0.00 0.00 3.62
2753 2825 3.643792 AGCACTGTAGTTCTCTCTTGGTT 59.356 43.478 0.00 0.00 0.00 3.67
2754 2826 3.235200 AGCACTGTAGTTCTCTCTTGGT 58.765 45.455 0.00 0.00 0.00 3.67
2755 2827 3.951775 AGCACTGTAGTTCTCTCTTGG 57.048 47.619 0.00 0.00 0.00 3.61
2756 2828 5.635700 GGTAAAGCACTGTAGTTCTCTCTTG 59.364 44.000 0.00 0.00 0.00 3.02
2757 2829 5.304614 TGGTAAAGCACTGTAGTTCTCTCTT 59.695 40.000 0.00 0.00 0.00 2.85
2758 2830 4.833380 TGGTAAAGCACTGTAGTTCTCTCT 59.167 41.667 0.00 0.00 0.00 3.10
2759 2831 5.135508 TGGTAAAGCACTGTAGTTCTCTC 57.864 43.478 0.00 0.00 0.00 3.20
2760 2832 5.482908 CATGGTAAAGCACTGTAGTTCTCT 58.517 41.667 0.00 0.00 0.00 3.10
2761 2833 4.093556 GCATGGTAAAGCACTGTAGTTCTC 59.906 45.833 0.00 0.00 0.00 2.87
2762 2834 4.003648 GCATGGTAAAGCACTGTAGTTCT 58.996 43.478 0.00 0.00 0.00 3.01
2763 2835 3.751175 TGCATGGTAAAGCACTGTAGTTC 59.249 43.478 0.00 0.00 35.51 3.01
2764 2836 3.750371 TGCATGGTAAAGCACTGTAGTT 58.250 40.909 0.00 0.00 35.51 2.24
2765 2837 3.417069 TGCATGGTAAAGCACTGTAGT 57.583 42.857 0.00 0.00 35.51 2.73
2766 2838 4.764679 TTTGCATGGTAAAGCACTGTAG 57.235 40.909 0.00 0.00 41.05 2.74
2767 2839 5.521906 TTTTTGCATGGTAAAGCACTGTA 57.478 34.783 0.00 0.00 41.05 2.74
2768 2840 4.399004 TTTTTGCATGGTAAAGCACTGT 57.601 36.364 0.00 0.00 41.05 3.55
2788 2860 5.360999 GCTGGAGATGCCCTAAGTAATTTTT 59.639 40.000 0.00 0.00 34.97 1.94
2789 2861 4.889995 GCTGGAGATGCCCTAAGTAATTTT 59.110 41.667 0.00 0.00 34.97 1.82
2790 2862 4.464947 GCTGGAGATGCCCTAAGTAATTT 58.535 43.478 0.00 0.00 34.97 1.82
2791 2863 3.181439 GGCTGGAGATGCCCTAAGTAATT 60.181 47.826 0.00 0.00 44.32 1.40
2792 2864 2.373502 GGCTGGAGATGCCCTAAGTAAT 59.626 50.000 0.00 0.00 44.32 1.89
2793 2865 1.768870 GGCTGGAGATGCCCTAAGTAA 59.231 52.381 0.00 0.00 44.32 2.24
2794 2866 1.424638 GGCTGGAGATGCCCTAAGTA 58.575 55.000 0.00 0.00 44.32 2.24
2795 2867 2.225792 GGCTGGAGATGCCCTAAGT 58.774 57.895 0.00 0.00 44.32 2.24
2890 2965 1.421382 GTCCGAACCGACGATTTTCA 58.579 50.000 0.00 0.00 35.09 2.69
2969 3045 1.674322 GTGCTTTTCCCTAGCGCCA 60.674 57.895 2.29 0.00 41.95 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.