Multiple sequence alignment - TraesCS3A01G232900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G232900 chr3A 100.000 2339 0 0 1 2339 434851600 434849262 0.000000e+00 4320.0
1 TraesCS3A01G232900 chr3A 87.048 1382 151 17 1 1357 211951676 211953054 0.000000e+00 1535.0
2 TraesCS3A01G232900 chr3D 93.552 1706 89 8 1 1687 300565461 300567164 0.000000e+00 2521.0
3 TraesCS3A01G232900 chr3D 87.320 1041 103 20 1 1017 188362073 188363108 0.000000e+00 1164.0
4 TraesCS3A01G232900 chr3D 89.893 841 68 6 516 1340 93477873 93477034 0.000000e+00 1066.0
5 TraesCS3A01G232900 chr3D 90.833 240 17 5 1740 1978 246601756 246601521 1.350000e-82 316.0
6 TraesCS3A01G232900 chr3D 95.082 61 3 0 1679 1739 300567547 300567607 1.910000e-16 97.1
7 TraesCS3A01G232900 chr3D 84.091 88 13 1 2020 2106 246601392 246601305 1.490000e-12 84.2
8 TraesCS3A01G232900 chr3B 94.128 1652 86 8 97 1739 420878572 420876923 0.000000e+00 2503.0
9 TraesCS3A01G232900 chr3B 87.419 1383 139 17 1 1360 1790804 1789434 0.000000e+00 1557.0
10 TraesCS3A01G232900 chr2D 89.898 1376 112 14 7 1360 574398724 574397354 0.000000e+00 1746.0
11 TraesCS3A01G232900 chr2D 92.949 156 11 0 1377 1532 86085962 86086117 6.500000e-56 228.0
12 TraesCS3A01G232900 chr7D 89.512 1373 121 11 1 1352 439710657 439709287 0.000000e+00 1716.0
13 TraesCS3A01G232900 chr7D 94.872 156 6 2 1378 1532 457148795 457148949 2.320000e-60 243.0
14 TraesCS3A01G232900 chr6D 87.922 1391 140 15 1 1367 48683493 48682107 0.000000e+00 1613.0
15 TraesCS3A01G232900 chr6D 88.152 1131 106 13 266 1370 32688757 32687629 0.000000e+00 1321.0
16 TraesCS3A01G232900 chr6D 88.258 264 24 7 1739 1999 275465310 275465051 2.260000e-80 309.0
17 TraesCS3A01G232900 chr7B 87.863 1376 141 15 1 1352 651392904 651391531 0.000000e+00 1592.0
18 TraesCS3A01G232900 chr5A 87.599 1387 142 18 1 1361 592306899 592305517 0.000000e+00 1581.0
19 TraesCS3A01G232900 chr5A 90.441 136 12 1 2107 2241 6674880 6674745 6.640000e-41 178.0
20 TraesCS3A01G232900 chr5A 87.640 89 9 2 2020 2106 6674903 6674815 4.110000e-18 102.0
21 TraesCS3A01G232900 chr4A 89.229 752 63 7 606 1340 4888741 4889491 0.000000e+00 924.0
22 TraesCS3A01G232900 chr4A 88.716 257 21 8 1737 1990 521547741 521547490 8.120000e-80 307.0
23 TraesCS3A01G232900 chr4A 92.405 158 12 0 1378 1535 38011476 38011319 2.340000e-55 226.0
24 TraesCS3A01G232900 chr4A 91.176 136 11 1 2107 2241 89396240 89396105 1.430000e-42 183.0
25 TraesCS3A01G232900 chr4A 89.011 91 9 1 2107 2196 521547474 521547384 6.830000e-21 111.0
26 TraesCS3A01G232900 chr4A 92.208 77 5 1 2166 2241 521547387 521547311 8.840000e-20 108.0
27 TraesCS3A01G232900 chr4A 87.640 89 9 2 2020 2106 521547497 521547409 4.110000e-18 102.0
28 TraesCS3A01G232900 chr4A 84.270 89 12 2 2020 2106 89396263 89396175 4.140000e-13 86.1
29 TraesCS3A01G232900 chr1B 90.029 682 59 6 1 676 415232993 415233671 0.000000e+00 874.0
30 TraesCS3A01G232900 chr1B 89.589 682 52 7 677 1341 415252312 415252991 0.000000e+00 848.0
31 TraesCS3A01G232900 chr6A 91.018 501 29 8 1740 2238 101564072 101564558 0.000000e+00 662.0
32 TraesCS3A01G232900 chr5D 93.469 245 12 4 1737 1980 187945324 187945565 6.140000e-96 361.0
33 TraesCS3A01G232900 chr5D 90.421 261 17 7 1722 1980 492348858 492349112 1.040000e-88 337.0
34 TraesCS3A01G232900 chr5D 88.636 264 24 6 1738 1999 220702584 220702325 1.350000e-82 316.0
35 TraesCS3A01G232900 chr2A 92.140 229 14 4 1740 1968 294234711 294234935 1.040000e-83 320.0
36 TraesCS3A01G232900 chr2A 93.590 156 9 1 1377 1532 86445857 86446011 5.030000e-57 231.0
37 TraesCS3A01G232900 chr2A 96.000 50 2 0 1561 1610 150121416 150121367 5.360000e-12 82.4
38 TraesCS3A01G232900 chr1D 87.879 264 26 6 1738 1999 386466220 386466479 2.920000e-79 305.0
39 TraesCS3A01G232900 chr7A 93.631 157 10 0 1376 1532 130229539 130229695 3.890000e-58 235.0
40 TraesCS3A01G232900 chr7A 91.772 158 13 0 1376 1533 137770397 137770554 1.090000e-53 220.0
41 TraesCS3A01G232900 chr7A 89.706 136 13 1 2107 2241 548366484 548366349 3.090000e-39 172.0
42 TraesCS3A01G232900 chr7A 87.640 89 9 2 2020 2106 548366507 548366419 4.110000e-18 102.0
43 TraesCS3A01G232900 chr2B 92.308 156 11 1 1377 1532 139077880 139078034 1.090000e-53 220.0
44 TraesCS3A01G232900 chr1A 89.706 136 13 1 2107 2241 589052080 589051945 3.090000e-39 172.0
45 TraesCS3A01G232900 chr1A 88.235 136 15 1 2107 2241 565048221 565048086 6.690000e-36 161.0
46 TraesCS3A01G232900 chr1A 87.640 89 9 2 2020 2106 565048244 565048156 4.110000e-18 102.0
47 TraesCS3A01G232900 chr1A 88.095 84 8 2 2025 2106 589052098 589052015 5.320000e-17 99.0
48 TraesCS3A01G232900 chr5B 92.405 79 5 1 1534 1612 454871434 454871357 6.830000e-21 111.0
49 TraesCS3A01G232900 chr5B 91.026 78 7 0 1531 1608 78968859 78968782 3.180000e-19 106.0
50 TraesCS3A01G232900 chr6B 89.610 77 8 0 1531 1607 29529001 29528925 5.320000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G232900 chr3A 434849262 434851600 2338 True 4320.00 4320 100.000 1 2339 1 chr3A.!!$R1 2338
1 TraesCS3A01G232900 chr3A 211951676 211953054 1378 False 1535.00 1535 87.048 1 1357 1 chr3A.!!$F1 1356
2 TraesCS3A01G232900 chr3D 300565461 300567607 2146 False 1309.05 2521 94.317 1 1739 2 chr3D.!!$F2 1738
3 TraesCS3A01G232900 chr3D 188362073 188363108 1035 False 1164.00 1164 87.320 1 1017 1 chr3D.!!$F1 1016
4 TraesCS3A01G232900 chr3D 93477034 93477873 839 True 1066.00 1066 89.893 516 1340 1 chr3D.!!$R1 824
5 TraesCS3A01G232900 chr3B 420876923 420878572 1649 True 2503.00 2503 94.128 97 1739 1 chr3B.!!$R2 1642
6 TraesCS3A01G232900 chr3B 1789434 1790804 1370 True 1557.00 1557 87.419 1 1360 1 chr3B.!!$R1 1359
7 TraesCS3A01G232900 chr2D 574397354 574398724 1370 True 1746.00 1746 89.898 7 1360 1 chr2D.!!$R1 1353
8 TraesCS3A01G232900 chr7D 439709287 439710657 1370 True 1716.00 1716 89.512 1 1352 1 chr7D.!!$R1 1351
9 TraesCS3A01G232900 chr6D 48682107 48683493 1386 True 1613.00 1613 87.922 1 1367 1 chr6D.!!$R2 1366
10 TraesCS3A01G232900 chr6D 32687629 32688757 1128 True 1321.00 1321 88.152 266 1370 1 chr6D.!!$R1 1104
11 TraesCS3A01G232900 chr7B 651391531 651392904 1373 True 1592.00 1592 87.863 1 1352 1 chr7B.!!$R1 1351
12 TraesCS3A01G232900 chr5A 592305517 592306899 1382 True 1581.00 1581 87.599 1 1361 1 chr5A.!!$R1 1360
13 TraesCS3A01G232900 chr4A 4888741 4889491 750 False 924.00 924 89.229 606 1340 1 chr4A.!!$F1 734
14 TraesCS3A01G232900 chr1B 415232993 415233671 678 False 874.00 874 90.029 1 676 1 chr1B.!!$F1 675
15 TraesCS3A01G232900 chr1B 415252312 415252991 679 False 848.00 848 89.589 677 1341 1 chr1B.!!$F2 664


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 508 2.36497 TGAAGGTTTCACCCATTTGCTG 59.635 45.455 0.0 0.0 39.75 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2166 2594 0.036577 GATCCGGATCAGGGAGCATG 60.037 60.0 34.65 0.0 39.72 4.06 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.562176 GGAGAGTGGGAAATGGACACAAT 60.562 47.826 0.00 0.00 37.58 2.71
374 383 5.818857 GCGAACCATAGTTAACCCTATTTGA 59.181 40.000 0.88 0.00 35.94 2.69
411 420 2.568623 AGTCTGTCCGGCAAAAGATT 57.431 45.000 0.00 0.00 0.00 2.40
472 482 2.548067 CCGGGTTATGCTAGCTAACAGG 60.548 54.545 25.17 23.14 31.98 4.00
497 507 2.676748 TGAAGGTTTCACCCATTTGCT 58.323 42.857 0.00 0.00 39.75 3.91
498 508 2.364970 TGAAGGTTTCACCCATTTGCTG 59.635 45.455 0.00 0.00 39.75 4.41
546 557 5.290493 ACCAAACATATGCTCTTCCGATA 57.710 39.130 1.58 0.00 0.00 2.92
573 584 3.532641 AGCAAAGGAGGTCTGGAAAAT 57.467 42.857 0.00 0.00 0.00 1.82
584 595 3.372025 GGTCTGGAAAATGCTAGGGATGT 60.372 47.826 0.00 0.00 0.00 3.06
593 604 8.680903 GGAAAATGCTAGGGATGTATGATATTG 58.319 37.037 0.00 0.00 0.00 1.90
932 963 2.668632 GTTCCATGGGAGCGGTCA 59.331 61.111 17.59 0.00 31.21 4.02
959 991 4.901868 AGACGACAAAGGCAGGTTTATTA 58.098 39.130 0.00 0.00 0.00 0.98
1038 1073 4.335874 GCTCTCAGATTCGGTCTAACACTA 59.664 45.833 0.00 0.00 34.69 2.74
1198 1234 5.029650 TGTTACTGCTAAATTTGAGCACG 57.970 39.130 4.20 4.41 44.89 5.34
1223 1259 9.387257 CGGTAATAGGGAAACAAATAAAGTAGT 57.613 33.333 0.00 0.00 0.00 2.73
1230 1266 8.793592 AGGGAAACAAATAAAGTAGTTCATGAC 58.206 33.333 0.00 0.00 0.00 3.06
1292 1328 5.926542 GGTTTGAGGAGCCTTTAAATGAAAC 59.073 40.000 0.00 0.00 0.00 2.78
1296 1332 5.241506 TGAGGAGCCTTTAAATGAAACTGTG 59.758 40.000 0.00 0.00 0.00 3.66
1559 1596 7.000472 TGAGAAAATAGCTAGGGAATTCATGG 59.000 38.462 7.93 0.00 0.00 3.66
1731 2159 7.090319 AGGCATTTATGATGGATAGGTAACA 57.910 36.000 0.00 0.00 41.41 2.41
1784 2212 6.673154 AGCCATGTAACCTTTCGTATTTAC 57.327 37.500 0.00 0.00 0.00 2.01
1785 2213 5.587443 AGCCATGTAACCTTTCGTATTTACC 59.413 40.000 0.00 0.00 0.00 2.85
1786 2214 5.220912 GCCATGTAACCTTTCGTATTTACCC 60.221 44.000 0.00 0.00 0.00 3.69
1787 2215 6.117488 CCATGTAACCTTTCGTATTTACCCT 58.883 40.000 0.00 0.00 0.00 4.34
1788 2216 7.274447 CCATGTAACCTTTCGTATTTACCCTA 58.726 38.462 0.00 0.00 0.00 3.53
1789 2217 7.935210 CCATGTAACCTTTCGTATTTACCCTAT 59.065 37.037 0.00 0.00 0.00 2.57
1790 2218 9.333724 CATGTAACCTTTCGTATTTACCCTATT 57.666 33.333 0.00 0.00 0.00 1.73
1791 2219 8.721019 TGTAACCTTTCGTATTTACCCTATTG 57.279 34.615 0.00 0.00 0.00 1.90
1792 2220 8.320617 TGTAACCTTTCGTATTTACCCTATTGT 58.679 33.333 0.00 0.00 0.00 2.71
1793 2221 9.816354 GTAACCTTTCGTATTTACCCTATTGTA 57.184 33.333 0.00 0.00 0.00 2.41
1808 2236 6.635030 CCTATTGTATAAGGGGTTTCTTGC 57.365 41.667 0.00 0.00 0.00 4.01
1809 2237 6.126409 CCTATTGTATAAGGGGTTTCTTGCA 58.874 40.000 0.00 0.00 0.00 4.08
1810 2238 6.777580 CCTATTGTATAAGGGGTTTCTTGCAT 59.222 38.462 0.00 0.00 0.00 3.96
1811 2239 7.942341 CCTATTGTATAAGGGGTTTCTTGCATA 59.058 37.037 0.00 0.00 0.00 3.14
1812 2240 9.520515 CTATTGTATAAGGGGTTTCTTGCATAT 57.479 33.333 0.00 0.00 0.00 1.78
1815 2243 9.875708 TTGTATAAGGGGTTTCTTGCATATATT 57.124 29.630 0.00 0.00 0.00 1.28
1816 2244 9.515226 TGTATAAGGGGTTTCTTGCATATATTC 57.485 33.333 0.00 0.00 0.00 1.75
1817 2245 8.957466 GTATAAGGGGTTTCTTGCATATATTCC 58.043 37.037 0.00 0.00 0.00 3.01
1818 2246 5.402054 AGGGGTTTCTTGCATATATTCCA 57.598 39.130 0.00 0.00 0.00 3.53
1819 2247 5.140454 AGGGGTTTCTTGCATATATTCCAC 58.860 41.667 0.00 0.00 0.00 4.02
1820 2248 4.892934 GGGGTTTCTTGCATATATTCCACA 59.107 41.667 0.00 0.00 0.00 4.17
1821 2249 5.221244 GGGGTTTCTTGCATATATTCCACAC 60.221 44.000 0.00 0.00 0.00 3.82
1822 2250 5.221244 GGGTTTCTTGCATATATTCCACACC 60.221 44.000 0.00 0.00 0.00 4.16
1823 2251 5.594317 GGTTTCTTGCATATATTCCACACCT 59.406 40.000 0.00 0.00 0.00 4.00
1824 2252 6.460123 GGTTTCTTGCATATATTCCACACCTG 60.460 42.308 0.00 0.00 0.00 4.00
1825 2253 5.372343 TCTTGCATATATTCCACACCTGT 57.628 39.130 0.00 0.00 0.00 4.00
1826 2254 6.493189 TCTTGCATATATTCCACACCTGTA 57.507 37.500 0.00 0.00 0.00 2.74
1827 2255 6.288294 TCTTGCATATATTCCACACCTGTAC 58.712 40.000 0.00 0.00 0.00 2.90
1828 2256 5.622346 TGCATATATTCCACACCTGTACA 57.378 39.130 0.00 0.00 0.00 2.90
1829 2257 6.186420 TGCATATATTCCACACCTGTACAT 57.814 37.500 0.00 0.00 0.00 2.29
1830 2258 5.997129 TGCATATATTCCACACCTGTACATG 59.003 40.000 0.00 0.00 0.00 3.21
1831 2259 5.997746 GCATATATTCCACACCTGTACATGT 59.002 40.000 2.69 2.69 0.00 3.21
1832 2260 7.158697 GCATATATTCCACACCTGTACATGTA 58.841 38.462 0.08 0.08 0.00 2.29
1833 2261 7.824289 GCATATATTCCACACCTGTACATGTAT 59.176 37.037 9.18 0.00 0.00 2.29
1840 2268 9.596308 TTCCACACCTGTACATGTATATATACT 57.404 33.333 20.80 6.43 34.41 2.12
1841 2269 9.020731 TCCACACCTGTACATGTATATATACTG 57.979 37.037 20.80 17.63 34.41 2.74
1842 2270 8.251026 CCACACCTGTACATGTATATATACTGG 58.749 40.741 20.80 12.78 40.56 4.00
1843 2271 7.759886 CACACCTGTACATGTATATATACTGGC 59.240 40.741 20.80 13.91 39.17 4.85
1844 2272 7.093465 ACACCTGTACATGTATATATACTGGCC 60.093 40.741 20.80 0.00 39.17 5.36
1845 2273 7.124298 CACCTGTACATGTATATATACTGGCCT 59.876 40.741 20.80 6.74 39.17 5.19
1846 2274 8.341513 ACCTGTACATGTATATATACTGGCCTA 58.658 37.037 20.80 3.17 39.17 3.93
1847 2275 9.368416 CCTGTACATGTATATATACTGGCCTAT 57.632 37.037 20.80 5.18 32.19 2.57
1849 2277 9.143155 TGTACATGTATATATACTGGCCTATGG 57.857 37.037 20.80 5.84 34.41 2.74
1850 2278 7.067496 ACATGTATATATACTGGCCTATGGC 57.933 40.000 20.80 0.00 39.87 4.40
1860 2288 3.281332 GCCTATGGCCACTTGGAAA 57.719 52.632 20.73 0.00 44.06 3.13
1861 2289 1.780503 GCCTATGGCCACTTGGAAAT 58.219 50.000 20.73 0.69 44.06 2.17
1862 2290 2.944129 GCCTATGGCCACTTGGAAATA 58.056 47.619 20.73 1.87 44.06 1.40
1863 2291 2.623416 GCCTATGGCCACTTGGAAATAC 59.377 50.000 20.73 2.92 44.06 1.89
1864 2292 3.897239 CCTATGGCCACTTGGAAATACA 58.103 45.455 8.16 0.00 37.39 2.29
1865 2293 4.277476 CCTATGGCCACTTGGAAATACAA 58.723 43.478 8.16 0.00 37.39 2.41
1866 2294 7.178096 GCCTATGGCCACTTGGAAATACAAG 62.178 48.000 20.73 3.80 46.55 3.16
1886 2314 6.866480 ACAAGTTGCATATTTCCTAACATGG 58.134 36.000 1.81 0.00 0.00 3.66
1887 2315 6.437162 ACAAGTTGCATATTTCCTAACATGGT 59.563 34.615 1.81 0.00 0.00 3.55
1888 2316 7.613801 ACAAGTTGCATATTTCCTAACATGGTA 59.386 33.333 1.81 0.00 0.00 3.25
1889 2317 8.632679 CAAGTTGCATATTTCCTAACATGGTAT 58.367 33.333 0.00 0.00 0.00 2.73
1890 2318 8.766994 AGTTGCATATTTCCTAACATGGTATT 57.233 30.769 0.00 0.00 0.00 1.89
1891 2319 9.860650 AGTTGCATATTTCCTAACATGGTATTA 57.139 29.630 0.00 0.00 0.00 0.98
1894 2322 9.725019 TGCATATTTCCTAACATGGTATTAGAG 57.275 33.333 0.00 0.00 32.31 2.43
1895 2323 8.669243 GCATATTTCCTAACATGGTATTAGAGC 58.331 37.037 0.00 0.00 32.31 4.09
1896 2324 9.950496 CATATTTCCTAACATGGTATTAGAGCT 57.050 33.333 0.00 0.00 32.31 4.09
1899 2327 7.540474 TTCCTAACATGGTATTAGAGCTAGG 57.460 40.000 0.00 0.00 32.31 3.02
1900 2328 6.621394 TCCTAACATGGTATTAGAGCTAGGT 58.379 40.000 0.00 0.00 32.31 3.08
1901 2329 6.720288 TCCTAACATGGTATTAGAGCTAGGTC 59.280 42.308 14.19 14.19 32.31 3.85
1902 2330 6.493802 CCTAACATGGTATTAGAGCTAGGTCA 59.506 42.308 23.18 4.56 32.31 4.02
1903 2331 6.808321 AACATGGTATTAGAGCTAGGTCAA 57.192 37.500 23.18 15.02 0.00 3.18
1904 2332 7.380423 AACATGGTATTAGAGCTAGGTCAAT 57.620 36.000 23.18 19.82 0.00 2.57
1905 2333 7.380423 ACATGGTATTAGAGCTAGGTCAATT 57.620 36.000 23.18 9.70 0.00 2.32
1906 2334 7.806180 ACATGGTATTAGAGCTAGGTCAATTT 58.194 34.615 23.18 5.73 0.00 1.82
1907 2335 8.275040 ACATGGTATTAGAGCTAGGTCAATTTT 58.725 33.333 23.18 5.36 0.00 1.82
1908 2336 9.125026 CATGGTATTAGAGCTAGGTCAATTTTT 57.875 33.333 23.18 4.64 0.00 1.94
1938 2366 3.653256 CAACTCGTGCTGATTGATCTG 57.347 47.619 0.00 0.00 0.00 2.90
1940 2368 0.935898 CTCGTGCTGATTGATCTGCC 59.064 55.000 16.82 9.51 46.99 4.85
1941 2369 0.538584 TCGTGCTGATTGATCTGCCT 59.461 50.000 16.82 0.00 46.99 4.75
1942 2370 0.935898 CGTGCTGATTGATCTGCCTC 59.064 55.000 16.82 10.73 46.99 4.70
1943 2371 0.935898 GTGCTGATTGATCTGCCTCG 59.064 55.000 16.82 0.00 46.99 4.63
1944 2372 0.812811 TGCTGATTGATCTGCCTCGC 60.813 55.000 16.82 0.00 46.99 5.03
1945 2373 1.829349 GCTGATTGATCTGCCTCGCG 61.829 60.000 0.00 0.00 43.36 5.87
1946 2374 0.249197 CTGATTGATCTGCCTCGCGA 60.249 55.000 9.26 9.26 0.00 5.87
1947 2375 0.528466 TGATTGATCTGCCTCGCGAC 60.528 55.000 3.71 0.00 0.00 5.19
1948 2376 1.543941 GATTGATCTGCCTCGCGACG 61.544 60.000 3.71 1.73 0.00 5.12
1949 2377 4.854784 TGATCTGCCTCGCGACGC 62.855 66.667 21.03 21.03 0.00 5.19
1963 2391 3.991051 ACGCCACCGTCCTCTGTG 61.991 66.667 0.00 0.00 46.39 3.66
1966 2394 4.394712 CCACCGTCCTCTGTGGCC 62.395 72.222 0.00 0.00 44.98 5.36
1967 2395 4.742201 CACCGTCCTCTGTGGCCG 62.742 72.222 0.00 0.00 36.88 6.13
1969 2397 4.436998 CCGTCCTCTGTGGCCGTC 62.437 72.222 0.00 0.00 35.07 4.79
1970 2398 4.778415 CGTCCTCTGTGGCCGTCG 62.778 72.222 0.00 0.00 31.78 5.12
1973 2401 4.803426 CCTCTGTGGCCGTCGCTC 62.803 72.222 0.00 0.00 34.44 5.03
1974 2402 3.753434 CTCTGTGGCCGTCGCTCT 61.753 66.667 0.00 0.00 34.44 4.09
1975 2403 3.978723 CTCTGTGGCCGTCGCTCTG 62.979 68.421 0.00 0.00 34.44 3.35
1976 2404 4.363990 CTGTGGCCGTCGCTCTGT 62.364 66.667 0.00 0.00 34.44 3.41
1977 2405 3.865929 CTGTGGCCGTCGCTCTGTT 62.866 63.158 0.00 0.00 34.44 3.16
1978 2406 3.112709 GTGGCCGTCGCTCTGTTC 61.113 66.667 0.00 0.00 34.44 3.18
1979 2407 3.303135 TGGCCGTCGCTCTGTTCT 61.303 61.111 0.00 0.00 34.44 3.01
1980 2408 2.507324 GGCCGTCGCTCTGTTCTC 60.507 66.667 0.00 0.00 34.44 2.87
1981 2409 2.569134 GCCGTCGCTCTGTTCTCT 59.431 61.111 0.00 0.00 0.00 3.10
1982 2410 1.654954 GGCCGTCGCTCTGTTCTCTA 61.655 60.000 0.00 0.00 34.44 2.43
1983 2411 0.382515 GCCGTCGCTCTGTTCTCTAT 59.617 55.000 0.00 0.00 0.00 1.98
1984 2412 1.598430 GCCGTCGCTCTGTTCTCTATC 60.598 57.143 0.00 0.00 0.00 2.08
1985 2413 1.671328 CCGTCGCTCTGTTCTCTATCA 59.329 52.381 0.00 0.00 0.00 2.15
1986 2414 2.539953 CCGTCGCTCTGTTCTCTATCAC 60.540 54.545 0.00 0.00 0.00 3.06
1987 2415 2.539953 CGTCGCTCTGTTCTCTATCACC 60.540 54.545 0.00 0.00 0.00 4.02
1988 2416 1.671328 TCGCTCTGTTCTCTATCACCG 59.329 52.381 0.00 0.00 0.00 4.94
1989 2417 1.846541 GCTCTGTTCTCTATCACCGC 58.153 55.000 0.00 0.00 0.00 5.68
1990 2418 1.407258 GCTCTGTTCTCTATCACCGCT 59.593 52.381 0.00 0.00 0.00 5.52
1991 2419 2.797792 GCTCTGTTCTCTATCACCGCTG 60.798 54.545 0.00 0.00 0.00 5.18
1992 2420 1.751351 TCTGTTCTCTATCACCGCTGG 59.249 52.381 0.00 0.00 0.00 4.85
1993 2421 0.175760 TGTTCTCTATCACCGCTGGC 59.824 55.000 0.00 0.00 0.00 4.85
1994 2422 0.461961 GTTCTCTATCACCGCTGGCT 59.538 55.000 0.00 0.00 0.00 4.75
1995 2423 0.747255 TTCTCTATCACCGCTGGCTC 59.253 55.000 0.00 0.00 0.00 4.70
1996 2424 0.106469 TCTCTATCACCGCTGGCTCT 60.106 55.000 0.00 0.00 0.00 4.09
1997 2425 0.313672 CTCTATCACCGCTGGCTCTC 59.686 60.000 0.00 0.00 0.00 3.20
1998 2426 1.109920 TCTATCACCGCTGGCTCTCC 61.110 60.000 0.00 0.00 0.00 3.71
1999 2427 2.093537 CTATCACCGCTGGCTCTCCC 62.094 65.000 0.00 0.00 0.00 4.30
2022 2450 4.284550 GGCTGGGCCCAACTGTCA 62.285 66.667 28.29 0.00 44.06 3.58
2023 2451 2.985847 GCTGGGCCCAACTGTCAC 60.986 66.667 28.29 5.47 0.00 3.67
2024 2452 2.282462 CTGGGCCCAACTGTCACC 60.282 66.667 28.29 0.00 0.00 4.02
2025 2453 4.263572 TGGGCCCAACTGTCACCG 62.264 66.667 26.33 0.00 0.00 4.94
2027 2455 4.643387 GGCCCAACTGTCACCGCT 62.643 66.667 0.00 0.00 0.00 5.52
2028 2456 3.357079 GCCCAACTGTCACCGCTG 61.357 66.667 0.00 0.00 0.00 5.18
2029 2457 2.111043 CCCAACTGTCACCGCTGT 59.889 61.111 0.00 0.00 0.00 4.40
2030 2458 2.253758 CCCAACTGTCACCGCTGTG 61.254 63.158 1.20 1.20 44.18 3.66
2031 2459 1.523711 CCAACTGTCACCGCTGTGT 60.524 57.895 8.20 0.00 43.26 3.72
2032 2460 1.643292 CAACTGTCACCGCTGTGTG 59.357 57.895 8.20 0.00 43.26 3.82
2033 2461 1.523711 AACTGTCACCGCTGTGTGG 60.524 57.895 8.20 2.90 43.26 4.17
2034 2462 1.966901 AACTGTCACCGCTGTGTGGA 61.967 55.000 8.20 0.00 43.26 4.02
2035 2463 1.004560 CTGTCACCGCTGTGTGGAT 60.005 57.895 8.20 0.00 43.26 3.41
2036 2464 1.005037 TGTCACCGCTGTGTGGATC 60.005 57.895 8.20 0.00 43.26 3.36
2037 2465 2.094659 GTCACCGCTGTGTGGATCG 61.095 63.158 8.20 0.00 43.26 3.69
2038 2466 3.490759 CACCGCTGTGTGGATCGC 61.491 66.667 4.02 0.00 37.72 4.58
2039 2467 4.760047 ACCGCTGTGTGGATCGCC 62.760 66.667 4.02 0.00 36.58 5.54
2040 2468 4.758251 CCGCTGTGTGGATCGCCA 62.758 66.667 0.00 0.00 43.47 5.69
2068 2496 4.918201 CTGCCTTCGATCCCGCCC 62.918 72.222 0.00 0.00 35.37 6.13
2071 2499 4.891727 CCTTCGATCCCGCCCGTG 62.892 72.222 0.00 0.00 35.37 4.94
2082 2510 4.467084 GCCCGTGCGATTCCTCCA 62.467 66.667 0.00 0.00 0.00 3.86
2083 2511 2.505982 CCCGTGCGATTCCTCCAT 59.494 61.111 0.00 0.00 0.00 3.41
2084 2512 1.595382 CCCGTGCGATTCCTCCATC 60.595 63.158 0.00 0.00 0.00 3.51
2085 2513 1.143838 CCGTGCGATTCCTCCATCA 59.856 57.895 0.00 0.00 0.00 3.07
2086 2514 1.154205 CCGTGCGATTCCTCCATCAC 61.154 60.000 0.00 0.00 0.00 3.06
2087 2515 1.482621 CGTGCGATTCCTCCATCACG 61.483 60.000 0.00 0.00 40.65 4.35
2088 2516 0.179111 GTGCGATTCCTCCATCACGA 60.179 55.000 0.00 0.00 0.00 4.35
2089 2517 0.752658 TGCGATTCCTCCATCACGAT 59.247 50.000 0.00 0.00 0.00 3.73
2090 2518 1.269778 TGCGATTCCTCCATCACGATC 60.270 52.381 0.00 0.00 0.00 3.69
2091 2519 1.691127 CGATTCCTCCATCACGATCG 58.309 55.000 14.88 14.88 0.00 3.69
2092 2520 1.266989 CGATTCCTCCATCACGATCGA 59.733 52.381 24.34 0.00 38.81 3.59
2093 2521 2.666895 CGATTCCTCCATCACGATCGAG 60.667 54.545 24.34 15.06 38.81 4.04
2094 2522 1.763968 TTCCTCCATCACGATCGAGT 58.236 50.000 24.34 3.85 0.00 4.18
2095 2523 1.309950 TCCTCCATCACGATCGAGTC 58.690 55.000 24.34 0.00 0.00 3.36
2096 2524 1.025041 CCTCCATCACGATCGAGTCA 58.975 55.000 24.34 0.00 0.00 3.41
2097 2525 1.405463 CCTCCATCACGATCGAGTCAA 59.595 52.381 24.34 0.00 0.00 3.18
2098 2526 2.455032 CTCCATCACGATCGAGTCAAC 58.545 52.381 24.34 0.00 0.00 3.18
2099 2527 1.191944 CCATCACGATCGAGTCAACG 58.808 55.000 24.34 3.03 0.00 4.10
2100 2528 0.567968 CATCACGATCGAGTCAACGC 59.432 55.000 24.34 0.00 0.00 4.84
2101 2529 0.525668 ATCACGATCGAGTCAACGCC 60.526 55.000 24.34 0.00 0.00 5.68
2102 2530 2.202440 ACGATCGAGTCAACGCCG 60.202 61.111 24.34 0.00 36.12 6.46
2103 2531 2.202440 CGATCGAGTCAACGCCGT 60.202 61.111 10.26 0.00 0.00 5.68
2104 2532 2.497092 CGATCGAGTCAACGCCGTG 61.497 63.158 10.26 0.00 0.00 4.94
2105 2533 2.789203 GATCGAGTCAACGCCGTGC 61.789 63.158 0.00 0.00 0.00 5.34
2121 2549 4.021925 GCGCTGGTCCACTCCCTT 62.022 66.667 0.00 0.00 0.00 3.95
2122 2550 2.266055 CGCTGGTCCACTCCCTTC 59.734 66.667 0.00 0.00 0.00 3.46
2123 2551 2.266055 GCTGGTCCACTCCCTTCG 59.734 66.667 0.00 0.00 0.00 3.79
2124 2552 2.266055 CTGGTCCACTCCCTTCGC 59.734 66.667 0.00 0.00 0.00 4.70
2125 2553 2.203788 TGGTCCACTCCCTTCGCT 60.204 61.111 0.00 0.00 0.00 4.93
2126 2554 2.232298 CTGGTCCACTCCCTTCGCTC 62.232 65.000 0.00 0.00 0.00 5.03
2127 2555 2.579738 GTCCACTCCCTTCGCTCC 59.420 66.667 0.00 0.00 0.00 4.70
2128 2556 2.683933 TCCACTCCCTTCGCTCCC 60.684 66.667 0.00 0.00 0.00 4.30
2129 2557 4.148825 CCACTCCCTTCGCTCCCG 62.149 72.222 0.00 0.00 0.00 5.14
2130 2558 3.068691 CACTCCCTTCGCTCCCGA 61.069 66.667 0.00 0.00 42.66 5.14
2131 2559 2.042843 ACTCCCTTCGCTCCCGAT 60.043 61.111 0.00 0.00 43.97 4.18
2132 2560 2.128507 ACTCCCTTCGCTCCCGATC 61.129 63.158 0.00 0.00 43.97 3.69
2133 2561 3.200887 CTCCCTTCGCTCCCGATCG 62.201 68.421 8.51 8.51 43.97 3.69
2134 2562 3.217017 CCCTTCGCTCCCGATCGA 61.217 66.667 18.66 0.00 43.97 3.59
2135 2563 2.333225 CCTTCGCTCCCGATCGAG 59.667 66.667 18.66 8.18 43.97 4.04
2136 2564 2.187493 CCTTCGCTCCCGATCGAGA 61.187 63.158 18.66 8.18 43.97 4.04
2137 2565 1.281353 CTTCGCTCCCGATCGAGAG 59.719 63.158 21.08 21.08 43.97 3.20
2138 2566 1.440938 CTTCGCTCCCGATCGAGAGT 61.441 60.000 24.95 0.00 43.97 3.24
2139 2567 1.030488 TTCGCTCCCGATCGAGAGTT 61.030 55.000 24.95 0.00 43.97 3.01
2140 2568 1.009449 CGCTCCCGATCGAGAGTTC 60.009 63.158 24.95 10.65 36.29 3.01
2141 2569 1.360911 GCTCCCGATCGAGAGTTCC 59.639 63.158 24.95 7.62 32.47 3.62
2142 2570 2.034607 CTCCCGATCGAGAGTTCCC 58.965 63.158 18.66 0.00 30.97 3.97
2143 2571 0.466555 CTCCCGATCGAGAGTTCCCT 60.467 60.000 18.66 0.00 30.97 4.20
2144 2572 0.465824 TCCCGATCGAGAGTTCCCTC 60.466 60.000 18.66 0.00 38.04 4.30
2152 2580 1.308326 AGAGTTCCCTCTCCTCCCG 59.692 63.158 0.00 0.00 45.08 5.14
2153 2581 1.215679 AGAGTTCCCTCTCCTCCCGA 61.216 60.000 0.00 0.00 45.08 5.14
2154 2582 0.105913 GAGTTCCCTCTCCTCCCGAT 60.106 60.000 0.00 0.00 34.69 4.18
2155 2583 0.105913 AGTTCCCTCTCCTCCCGATC 60.106 60.000 0.00 0.00 0.00 3.69
2156 2584 1.152735 TTCCCTCTCCTCCCGATCG 60.153 63.158 8.51 8.51 0.00 3.69
2157 2585 3.299190 CCCTCTCCTCCCGATCGC 61.299 72.222 10.32 0.00 0.00 4.58
2158 2586 3.665226 CCTCTCCTCCCGATCGCG 61.665 72.222 10.32 0.00 37.24 5.87
2159 2587 2.902846 CTCTCCTCCCGATCGCGT 60.903 66.667 10.32 0.00 35.23 6.01
2160 2588 2.899044 CTCTCCTCCCGATCGCGTC 61.899 68.421 10.32 1.94 35.23 5.19
2161 2589 3.967335 CTCCTCCCGATCGCGTCC 61.967 72.222 10.32 0.00 35.23 4.79
2162 2590 4.807631 TCCTCCCGATCGCGTCCA 62.808 66.667 10.32 0.00 35.23 4.02
2163 2591 4.570663 CCTCCCGATCGCGTCCAC 62.571 72.222 10.32 0.00 35.23 4.02
2164 2592 3.822192 CTCCCGATCGCGTCCACA 61.822 66.667 10.32 0.00 35.23 4.17
2165 2593 4.124351 TCCCGATCGCGTCCACAC 62.124 66.667 10.32 0.00 35.23 3.82
2167 2595 4.429212 CCGATCGCGTCCACACCA 62.429 66.667 10.32 0.00 35.23 4.17
2168 2596 2.202743 CGATCGCGTCCACACCAT 60.203 61.111 5.77 0.00 0.00 3.55
2169 2597 2.516589 CGATCGCGTCCACACCATG 61.517 63.158 5.77 0.00 0.00 3.66
2170 2598 2.813179 GATCGCGTCCACACCATGC 61.813 63.158 5.77 0.00 0.00 4.06
2171 2599 3.315142 ATCGCGTCCACACCATGCT 62.315 57.895 5.77 0.00 0.00 3.79
2172 2600 3.490759 CGCGTCCACACCATGCTC 61.491 66.667 0.00 0.00 0.00 4.26
2173 2601 3.127533 GCGTCCACACCATGCTCC 61.128 66.667 0.00 0.00 0.00 4.70
2174 2602 2.436646 CGTCCACACCATGCTCCC 60.437 66.667 0.00 0.00 0.00 4.30
2175 2603 2.959484 CGTCCACACCATGCTCCCT 61.959 63.158 0.00 0.00 0.00 4.20
2176 2604 1.377725 GTCCACACCATGCTCCCTG 60.378 63.158 0.00 0.00 0.00 4.45
2177 2605 1.538629 TCCACACCATGCTCCCTGA 60.539 57.895 0.00 0.00 0.00 3.86
2178 2606 0.915872 TCCACACCATGCTCCCTGAT 60.916 55.000 0.00 0.00 0.00 2.90
2179 2607 0.465097 CCACACCATGCTCCCTGATC 60.465 60.000 0.00 0.00 0.00 2.92
2180 2608 0.465097 CACACCATGCTCCCTGATCC 60.465 60.000 0.00 0.00 0.00 3.36
2181 2609 1.227764 CACCATGCTCCCTGATCCG 60.228 63.158 0.00 0.00 0.00 4.18
2182 2610 2.429058 CCATGCTCCCTGATCCGG 59.571 66.667 0.00 0.00 0.00 5.14
2183 2611 2.142761 CCATGCTCCCTGATCCGGA 61.143 63.158 6.61 6.61 0.00 5.14
2184 2612 1.486997 CCATGCTCCCTGATCCGGAT 61.487 60.000 19.21 19.21 0.00 4.18
2185 2613 0.036577 CATGCTCCCTGATCCGGATC 60.037 60.000 33.41 33.41 38.29 3.36
2186 2614 0.472543 ATGCTCCCTGATCCGGATCA 60.473 55.000 38.01 38.01 44.83 2.92
2187 2615 0.690744 TGCTCCCTGATCCGGATCAA 60.691 55.000 39.04 27.18 46.10 2.57
2188 2616 0.034616 GCTCCCTGATCCGGATCAAG 59.965 60.000 39.04 34.02 46.10 3.02
2189 2617 0.034616 CTCCCTGATCCGGATCAAGC 59.965 60.000 39.04 19.41 46.10 4.01
2190 2618 1.072159 CCCTGATCCGGATCAAGCC 59.928 63.158 39.04 19.05 46.10 4.35
2191 2619 1.301244 CCTGATCCGGATCAAGCCG 60.301 63.158 39.04 29.01 46.10 5.52
2200 2628 4.722700 ATCAAGCCGCCAGCCGTT 62.723 61.111 0.00 0.00 45.47 4.44
2213 2641 3.470888 CCGTTCCCCTCGCTGGAT 61.471 66.667 0.00 0.00 38.35 3.41
2214 2642 2.584608 CGTTCCCCTCGCTGGATT 59.415 61.111 0.00 0.00 38.35 3.01
2215 2643 1.521681 CGTTCCCCTCGCTGGATTC 60.522 63.158 0.00 0.00 38.35 2.52
2216 2644 1.153147 GTTCCCCTCGCTGGATTCC 60.153 63.158 0.00 0.00 38.35 3.01
2217 2645 1.615124 TTCCCCTCGCTGGATTCCA 60.615 57.895 5.05 5.05 38.35 3.53
2218 2646 1.910580 TTCCCCTCGCTGGATTCCAC 61.911 60.000 0.00 0.00 38.35 4.02
2219 2647 2.190578 CCCTCGCTGGATTCCACC 59.809 66.667 0.00 0.00 38.35 4.61
2220 2648 2.202932 CCTCGCTGGATTCCACCG 60.203 66.667 13.19 13.19 38.35 4.94
2221 2649 2.892425 CTCGCTGGATTCCACCGC 60.892 66.667 14.33 10.54 33.18 5.68
2222 2650 4.467084 TCGCTGGATTCCACCGCC 62.467 66.667 14.33 0.00 33.18 6.13
2224 2652 4.778143 GCTGGATTCCACCGCCGT 62.778 66.667 0.00 0.00 0.00 5.68
2225 2653 2.819595 CTGGATTCCACCGCCGTG 60.820 66.667 0.00 0.00 39.91 4.94
2226 2654 3.309436 CTGGATTCCACCGCCGTGA 62.309 63.158 6.77 0.00 43.14 4.35
2227 2655 2.189521 GGATTCCACCGCCGTGAT 59.810 61.111 6.77 0.00 43.14 3.06
2228 2656 1.887707 GGATTCCACCGCCGTGATC 60.888 63.158 6.77 2.98 43.14 2.92
2229 2657 1.144057 GATTCCACCGCCGTGATCT 59.856 57.895 6.77 0.00 43.14 2.75
2230 2658 0.876342 GATTCCACCGCCGTGATCTC 60.876 60.000 6.77 0.00 43.14 2.75
2231 2659 2.311688 ATTCCACCGCCGTGATCTCC 62.312 60.000 6.77 0.00 43.14 3.71
2232 2660 4.530857 CCACCGCCGTGATCTCCC 62.531 72.222 6.77 0.00 43.14 4.30
2233 2661 3.461773 CACCGCCGTGATCTCCCT 61.462 66.667 0.00 0.00 43.14 4.20
2234 2662 3.461773 ACCGCCGTGATCTCCCTG 61.462 66.667 0.00 0.00 0.00 4.45
2235 2663 4.227134 CCGCCGTGATCTCCCTGG 62.227 72.222 0.00 0.00 0.00 4.45
2236 2664 3.461773 CGCCGTGATCTCCCTGGT 61.462 66.667 0.00 0.00 0.00 4.00
2237 2665 2.990479 GCCGTGATCTCCCTGGTT 59.010 61.111 0.00 0.00 0.00 3.67
2238 2666 1.672854 CGCCGTGATCTCCCTGGTTA 61.673 60.000 0.00 0.00 0.00 2.85
2239 2667 0.759346 GCCGTGATCTCCCTGGTTAT 59.241 55.000 0.00 0.00 0.00 1.89
2240 2668 1.541233 GCCGTGATCTCCCTGGTTATG 60.541 57.143 0.00 0.00 0.00 1.90
2241 2669 1.762957 CCGTGATCTCCCTGGTTATGT 59.237 52.381 0.00 0.00 0.00 2.29
2242 2670 2.224066 CCGTGATCTCCCTGGTTATGTC 60.224 54.545 0.00 0.00 0.00 3.06
2243 2671 2.543861 CGTGATCTCCCTGGTTATGTCG 60.544 54.545 0.00 0.00 0.00 4.35
2244 2672 1.412710 TGATCTCCCTGGTTATGTCGC 59.587 52.381 0.00 0.00 0.00 5.19
2245 2673 1.689273 GATCTCCCTGGTTATGTCGCT 59.311 52.381 0.00 0.00 0.00 4.93
2246 2674 1.112113 TCTCCCTGGTTATGTCGCTC 58.888 55.000 0.00 0.00 0.00 5.03
2247 2675 0.105039 CTCCCTGGTTATGTCGCTCC 59.895 60.000 0.00 0.00 0.00 4.70
2248 2676 1.146263 CCCTGGTTATGTCGCTCCC 59.854 63.158 0.00 0.00 0.00 4.30
2249 2677 1.622607 CCCTGGTTATGTCGCTCCCA 61.623 60.000 0.00 0.00 0.00 4.37
2250 2678 0.469917 CCTGGTTATGTCGCTCCCAT 59.530 55.000 0.00 0.00 0.00 4.00
2251 2679 1.541233 CCTGGTTATGTCGCTCCCATC 60.541 57.143 0.00 0.00 0.00 3.51
2252 2680 1.414181 CTGGTTATGTCGCTCCCATCT 59.586 52.381 0.00 0.00 0.00 2.90
2253 2681 1.138859 TGGTTATGTCGCTCCCATCTG 59.861 52.381 0.00 0.00 0.00 2.90
2254 2682 1.221414 GTTATGTCGCTCCCATCTGC 58.779 55.000 0.00 0.00 0.00 4.26
2255 2683 0.829990 TTATGTCGCTCCCATCTGCA 59.170 50.000 0.00 0.00 0.00 4.41
2256 2684 0.390492 TATGTCGCTCCCATCTGCAG 59.610 55.000 7.63 7.63 0.00 4.41
2257 2685 1.620739 ATGTCGCTCCCATCTGCAGT 61.621 55.000 14.67 0.00 0.00 4.40
2258 2686 1.078848 GTCGCTCCCATCTGCAGTT 60.079 57.895 14.67 1.65 0.00 3.16
2259 2687 1.086634 GTCGCTCCCATCTGCAGTTC 61.087 60.000 14.67 0.00 0.00 3.01
2260 2688 2.169789 CGCTCCCATCTGCAGTTCG 61.170 63.158 14.67 3.19 0.00 3.95
2261 2689 2.467826 GCTCCCATCTGCAGTTCGC 61.468 63.158 14.67 5.61 42.89 4.70
2262 2690 1.817099 CTCCCATCTGCAGTTCGCC 60.817 63.158 14.67 0.00 41.33 5.54
2263 2691 3.197790 CCCATCTGCAGTTCGCCG 61.198 66.667 14.67 0.00 41.33 6.46
2264 2692 3.869272 CCATCTGCAGTTCGCCGC 61.869 66.667 14.67 0.00 41.33 6.53
2265 2693 4.214383 CATCTGCAGTTCGCCGCG 62.214 66.667 14.67 6.39 41.33 6.46
2266 2694 4.742201 ATCTGCAGTTCGCCGCGT 62.742 61.111 14.67 0.00 41.33 6.01
2271 2699 2.733218 CAGTTCGCCGCGTCTGAA 60.733 61.111 24.68 2.81 34.39 3.02
2272 2700 2.430921 AGTTCGCCGCGTCTGAAG 60.431 61.111 13.39 0.00 0.00 3.02
2273 2701 2.733593 GTTCGCCGCGTCTGAAGT 60.734 61.111 13.39 0.00 0.00 3.01
2274 2702 2.430244 TTCGCCGCGTCTGAAGTC 60.430 61.111 13.39 0.00 0.00 3.01
2275 2703 3.202216 TTCGCCGCGTCTGAAGTCA 62.202 57.895 13.39 0.00 0.00 3.41
2276 2704 3.175240 CGCCGCGTCTGAAGTCAG 61.175 66.667 4.92 1.65 45.08 3.51
2277 2705 3.482783 GCCGCGTCTGAAGTCAGC 61.483 66.667 4.92 0.00 43.46 4.26
2278 2706 2.811317 CCGCGTCTGAAGTCAGCC 60.811 66.667 4.92 0.00 43.46 4.85
2279 2707 3.175240 CGCGTCTGAAGTCAGCCG 61.175 66.667 7.36 7.36 46.63 5.52
2281 2709 3.175240 CGTCTGAAGTCAGCCGCG 61.175 66.667 0.00 0.00 38.50 6.46
2282 2710 3.482783 GTCTGAAGTCAGCCGCGC 61.483 66.667 0.00 0.00 43.46 6.86
2283 2711 4.742201 TCTGAAGTCAGCCGCGCC 62.742 66.667 0.00 0.00 43.46 6.53
2286 2714 4.742201 GAAGTCAGCCGCGCCAGA 62.742 66.667 0.00 0.00 0.00 3.86
2287 2715 4.087892 AAGTCAGCCGCGCCAGAT 62.088 61.111 0.00 0.00 0.00 2.90
2288 2716 4.521062 AGTCAGCCGCGCCAGATC 62.521 66.667 0.00 0.00 0.00 2.75
2309 2737 4.201122 CCCCCAGCTGCCATCCTC 62.201 72.222 8.66 0.00 0.00 3.71
2310 2738 4.559063 CCCCAGCTGCCATCCTCG 62.559 72.222 8.66 0.00 0.00 4.63
2322 2750 3.849951 TCCTCGCCGGATTCCTGC 61.850 66.667 5.05 8.92 36.69 4.85
2329 2757 4.609018 CGGATTCCTGCGCCGGAT 62.609 66.667 21.88 11.50 41.29 4.18
2330 2758 2.666526 GGATTCCTGCGCCGGATC 60.667 66.667 21.88 18.51 32.02 3.36
2331 2759 2.666526 GATTCCTGCGCCGGATCC 60.667 66.667 21.88 12.22 32.02 3.36
2332 2760 4.256180 ATTCCTGCGCCGGATCCC 62.256 66.667 21.88 0.00 32.02 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.040278 TGTCCATTTCCCACTCTCCAAG 59.960 50.000 0.00 0.00 0.00 3.61
37 38 6.012113 CCAGGCATCTTCCCAAATATTGATA 58.988 40.000 0.00 0.00 0.00 2.15
166 167 5.045942 TGGCCACATAGTTTGTCTAATCAGA 60.046 40.000 0.00 0.00 36.00 3.27
374 383 6.951971 ACAGACTAACTTCCATATCTTGCTT 58.048 36.000 0.00 0.00 0.00 3.91
497 507 0.106918 AAACCCTCCGAACAAGTGCA 60.107 50.000 0.00 0.00 0.00 4.57
498 508 1.804748 CTAAACCCTCCGAACAAGTGC 59.195 52.381 0.00 0.00 0.00 4.40
546 557 4.783227 TCCAGACCTCCTTTGCTTTACTAT 59.217 41.667 0.00 0.00 0.00 2.12
573 584 7.315066 TCAACAATATCATACATCCCTAGCA 57.685 36.000 0.00 0.00 0.00 3.49
593 604 5.915196 GGTCAACTTCACAAGCTTTATCAAC 59.085 40.000 0.00 0.00 0.00 3.18
809 840 0.472471 GACGCCTTGGGGGATAATGA 59.528 55.000 7.62 0.00 39.07 2.57
932 963 1.673033 CCTGCCTTTGTCGTCTCGAAT 60.673 52.381 0.00 0.00 37.72 3.34
959 991 4.453480 TCAATTTTCTGTTCCCTCCAGT 57.547 40.909 0.00 0.00 0.00 4.00
1038 1073 2.753043 CATCCTGCCCTTTGCGCT 60.753 61.111 9.73 0.00 45.60 5.92
1187 1222 4.497291 TCCCTATTACCGTGCTCAAATT 57.503 40.909 0.00 0.00 0.00 1.82
1247 1283 4.275936 ACCACTCGGAAGTCAAAGAAAATG 59.724 41.667 0.00 0.00 31.71 2.32
1374 1410 2.679429 AGGGAACGGAGGGAGTATAG 57.321 55.000 0.00 0.00 0.00 1.31
1526 1563 6.839134 TCCCTAGCTATTTTCTCATGTACTCA 59.161 38.462 0.00 0.00 0.00 3.41
1559 1596 6.575162 ATGGGTGTACAAAGTTCAAGATTC 57.425 37.500 0.00 0.00 0.00 2.52
1662 1699 0.895530 TCTCCACCTCCTAGCAAACG 59.104 55.000 0.00 0.00 0.00 3.60
1714 2142 8.638873 CAGTTACACTGTTACCTATCCATCATA 58.361 37.037 0.00 0.00 41.19 2.15
1758 2186 9.480053 GTAAATACGAAAGGTTACATGGCTATA 57.520 33.333 0.00 0.00 31.43 1.31
1759 2187 7.443272 GGTAAATACGAAAGGTTACATGGCTAT 59.557 37.037 0.00 0.00 32.19 2.97
1760 2188 6.762661 GGTAAATACGAAAGGTTACATGGCTA 59.237 38.462 0.00 0.00 32.19 3.93
1761 2189 5.587443 GGTAAATACGAAAGGTTACATGGCT 59.413 40.000 0.00 0.00 32.19 4.75
1762 2190 5.220912 GGGTAAATACGAAAGGTTACATGGC 60.221 44.000 0.00 0.00 32.19 4.40
1763 2191 6.117488 AGGGTAAATACGAAAGGTTACATGG 58.883 40.000 0.00 0.00 32.19 3.66
1764 2192 8.897872 ATAGGGTAAATACGAAAGGTTACATG 57.102 34.615 0.00 0.00 32.19 3.21
1765 2193 9.333724 CAATAGGGTAAATACGAAAGGTTACAT 57.666 33.333 0.00 0.00 32.19 2.29
1766 2194 8.320617 ACAATAGGGTAAATACGAAAGGTTACA 58.679 33.333 0.00 0.00 32.19 2.41
1767 2195 8.722480 ACAATAGGGTAAATACGAAAGGTTAC 57.278 34.615 0.00 0.00 0.00 2.50
1785 2213 6.126409 TGCAAGAAACCCCTTATACAATAGG 58.874 40.000 0.00 0.00 0.00 2.57
1786 2214 7.823745 ATGCAAGAAACCCCTTATACAATAG 57.176 36.000 0.00 0.00 0.00 1.73
1789 2217 9.875708 AATATATGCAAGAAACCCCTTATACAA 57.124 29.630 0.00 0.00 0.00 2.41
1790 2218 9.515226 GAATATATGCAAGAAACCCCTTATACA 57.485 33.333 0.00 0.00 0.00 2.29
1791 2219 8.957466 GGAATATATGCAAGAAACCCCTTATAC 58.043 37.037 0.00 0.00 0.00 1.47
1792 2220 8.674173 TGGAATATATGCAAGAAACCCCTTATA 58.326 33.333 0.00 0.00 0.00 0.98
1793 2221 7.451566 GTGGAATATATGCAAGAAACCCCTTAT 59.548 37.037 0.00 0.00 0.00 1.73
1794 2222 6.775629 GTGGAATATATGCAAGAAACCCCTTA 59.224 38.462 0.00 0.00 0.00 2.69
1795 2223 5.598417 GTGGAATATATGCAAGAAACCCCTT 59.402 40.000 0.00 0.00 0.00 3.95
1796 2224 5.140454 GTGGAATATATGCAAGAAACCCCT 58.860 41.667 0.00 0.00 0.00 4.79
1797 2225 4.892934 TGTGGAATATATGCAAGAAACCCC 59.107 41.667 0.00 0.00 0.00 4.95
1798 2226 5.221244 GGTGTGGAATATATGCAAGAAACCC 60.221 44.000 0.00 0.00 0.00 4.11
1799 2227 5.594317 AGGTGTGGAATATATGCAAGAAACC 59.406 40.000 0.00 0.00 0.00 3.27
1800 2228 6.095440 ACAGGTGTGGAATATATGCAAGAAAC 59.905 38.462 0.00 0.00 0.00 2.78
1801 2229 6.186957 ACAGGTGTGGAATATATGCAAGAAA 58.813 36.000 0.00 0.00 0.00 2.52
1802 2230 5.754782 ACAGGTGTGGAATATATGCAAGAA 58.245 37.500 0.00 0.00 0.00 2.52
1803 2231 5.372343 ACAGGTGTGGAATATATGCAAGA 57.628 39.130 0.00 0.00 0.00 3.02
1804 2232 6.054941 TGTACAGGTGTGGAATATATGCAAG 58.945 40.000 0.00 0.00 0.00 4.01
1805 2233 5.995446 TGTACAGGTGTGGAATATATGCAA 58.005 37.500 0.00 0.00 0.00 4.08
1806 2234 5.622346 TGTACAGGTGTGGAATATATGCA 57.378 39.130 0.00 0.00 0.00 3.96
1807 2235 5.997746 ACATGTACAGGTGTGGAATATATGC 59.002 40.000 13.18 0.00 0.00 3.14
1814 2242 9.596308 AGTATATATACATGTACAGGTGTGGAA 57.404 33.333 22.69 2.85 35.74 3.53
1815 2243 9.020731 CAGTATATATACATGTACAGGTGTGGA 57.979 37.037 22.69 9.13 35.74 4.02
1816 2244 8.251026 CCAGTATATATACATGTACAGGTGTGG 58.749 40.741 22.69 13.09 33.42 4.17
1817 2245 7.759886 GCCAGTATATATACATGTACAGGTGTG 59.240 40.741 22.69 8.01 37.57 3.82
1818 2246 7.093465 GGCCAGTATATATACATGTACAGGTGT 60.093 40.741 22.69 18.40 37.57 4.16
1819 2247 7.124298 AGGCCAGTATATATACATGTACAGGTG 59.876 40.741 22.69 9.15 37.57 4.00
1820 2248 7.189794 AGGCCAGTATATATACATGTACAGGT 58.810 38.462 22.00 18.23 37.57 4.00
1821 2249 7.661536 AGGCCAGTATATATACATGTACAGG 57.338 40.000 22.00 5.87 38.01 4.00
1823 2251 9.143155 CCATAGGCCAGTATATATACATGTACA 57.857 37.037 22.00 0.00 35.74 2.90
1824 2252 8.088981 GCCATAGGCCAGTATATATACATGTAC 58.911 40.741 22.00 9.96 44.06 2.90
1825 2253 8.190326 GCCATAGGCCAGTATATATACATGTA 57.810 38.462 22.00 8.27 44.06 2.29
1826 2254 7.067496 GCCATAGGCCAGTATATATACATGT 57.933 40.000 22.00 2.69 44.06 3.21
1842 2270 7.178096 CTTGTATTTCCAAGTGGCCATAGGC 62.178 48.000 9.72 0.00 41.31 3.93
1843 2271 3.897239 TGTATTTCCAAGTGGCCATAGG 58.103 45.455 9.72 12.02 34.44 2.57
1844 2272 5.505173 CTTGTATTTCCAAGTGGCCATAG 57.495 43.478 9.72 1.16 37.61 2.23
1860 2288 8.632679 CCATGTTAGGAAATATGCAACTTGTAT 58.367 33.333 0.00 0.00 33.98 2.29
1861 2289 7.613801 ACCATGTTAGGAAATATGCAACTTGTA 59.386 33.333 0.00 0.00 33.98 2.41
1862 2290 6.437162 ACCATGTTAGGAAATATGCAACTTGT 59.563 34.615 0.00 0.00 33.98 3.16
1863 2291 6.866480 ACCATGTTAGGAAATATGCAACTTG 58.134 36.000 0.00 0.00 33.98 3.16
1864 2292 8.766994 ATACCATGTTAGGAAATATGCAACTT 57.233 30.769 0.00 0.00 33.98 2.66
1865 2293 8.766994 AATACCATGTTAGGAAATATGCAACT 57.233 30.769 0.00 0.00 33.98 3.16
1868 2296 9.725019 CTCTAATACCATGTTAGGAAATATGCA 57.275 33.333 0.00 0.00 33.98 3.96
1869 2297 8.669243 GCTCTAATACCATGTTAGGAAATATGC 58.331 37.037 0.00 0.00 33.98 3.14
1870 2298 9.950496 AGCTCTAATACCATGTTAGGAAATATG 57.050 33.333 0.00 0.00 34.82 1.78
1873 2301 8.598041 CCTAGCTCTAATACCATGTTAGGAAAT 58.402 37.037 0.00 0.00 31.59 2.17
1874 2302 7.567622 ACCTAGCTCTAATACCATGTTAGGAAA 59.432 37.037 0.00 0.00 31.59 3.13
1875 2303 7.073854 ACCTAGCTCTAATACCATGTTAGGAA 58.926 38.462 0.00 0.00 31.59 3.36
1876 2304 6.621394 ACCTAGCTCTAATACCATGTTAGGA 58.379 40.000 0.00 0.00 31.59 2.94
1877 2305 6.493802 TGACCTAGCTCTAATACCATGTTAGG 59.506 42.308 0.00 0.00 31.59 2.69
1878 2306 7.526142 TGACCTAGCTCTAATACCATGTTAG 57.474 40.000 0.00 0.00 0.00 2.34
1879 2307 7.907841 TTGACCTAGCTCTAATACCATGTTA 57.092 36.000 0.00 0.00 0.00 2.41
1880 2308 6.808321 TTGACCTAGCTCTAATACCATGTT 57.192 37.500 0.00 0.00 0.00 2.71
1881 2309 7.380423 AATTGACCTAGCTCTAATACCATGT 57.620 36.000 0.00 0.00 0.00 3.21
1882 2310 8.682936 AAAATTGACCTAGCTCTAATACCATG 57.317 34.615 0.00 0.00 0.00 3.66
1918 2346 2.222976 GCAGATCAATCAGCACGAGTTG 60.223 50.000 0.00 0.00 38.91 3.16
1919 2347 2.005451 GCAGATCAATCAGCACGAGTT 58.995 47.619 0.00 0.00 38.91 3.01
1920 2348 1.649664 GCAGATCAATCAGCACGAGT 58.350 50.000 0.00 0.00 38.91 4.18
1921 2349 0.935898 GGCAGATCAATCAGCACGAG 59.064 55.000 9.23 0.00 40.59 4.18
1922 2350 0.538584 AGGCAGATCAATCAGCACGA 59.461 50.000 9.23 0.00 40.59 4.35
1923 2351 0.935898 GAGGCAGATCAATCAGCACG 59.064 55.000 9.23 0.00 40.59 5.34
1924 2352 0.935898 CGAGGCAGATCAATCAGCAC 59.064 55.000 9.23 2.86 40.59 4.40
1925 2353 0.812811 GCGAGGCAGATCAATCAGCA 60.813 55.000 9.23 0.00 40.59 4.41
1926 2354 1.829349 CGCGAGGCAGATCAATCAGC 61.829 60.000 0.00 0.00 38.43 4.26
1927 2355 0.249197 TCGCGAGGCAGATCAATCAG 60.249 55.000 3.71 0.00 0.00 2.90
1928 2356 0.528466 GTCGCGAGGCAGATCAATCA 60.528 55.000 10.24 0.00 34.40 2.57
1929 2357 1.543941 CGTCGCGAGGCAGATCAATC 61.544 60.000 16.57 0.00 33.27 2.67
1930 2358 1.589993 CGTCGCGAGGCAGATCAAT 60.590 57.895 16.57 0.00 33.27 2.57
1931 2359 2.202610 CGTCGCGAGGCAGATCAA 60.203 61.111 16.57 0.00 33.27 2.57
1932 2360 4.854784 GCGTCGCGAGGCAGATCA 62.855 66.667 39.63 1.03 41.43 2.92
1944 2372 4.778415 CAGAGGACGGTGGCGTCG 62.778 72.222 0.00 0.00 39.56 5.12
1945 2373 3.681835 ACAGAGGACGGTGGCGTC 61.682 66.667 0.00 0.00 38.09 5.19
1946 2374 3.991051 CACAGAGGACGGTGGCGT 61.991 66.667 0.00 0.00 38.25 5.68
1956 2384 4.803426 GAGCGACGGCCACAGAGG 62.803 72.222 2.24 0.00 41.24 3.69
1957 2385 3.753434 AGAGCGACGGCCACAGAG 61.753 66.667 2.24 0.00 41.24 3.35
1958 2386 4.056125 CAGAGCGACGGCCACAGA 62.056 66.667 2.24 0.00 41.24 3.41
1959 2387 3.865929 AACAGAGCGACGGCCACAG 62.866 63.158 2.24 0.00 41.24 3.66
1960 2388 3.858868 GAACAGAGCGACGGCCACA 62.859 63.158 2.24 0.00 41.24 4.17
1961 2389 3.112709 GAACAGAGCGACGGCCAC 61.113 66.667 2.24 0.00 41.24 5.01
1962 2390 3.282745 GAGAACAGAGCGACGGCCA 62.283 63.158 2.24 0.00 41.24 5.36
1963 2391 1.654954 TAGAGAACAGAGCGACGGCC 61.655 60.000 0.00 0.00 41.24 6.13
1964 2392 0.382515 ATAGAGAACAGAGCGACGGC 59.617 55.000 0.00 0.00 40.37 5.68
1965 2393 1.671328 TGATAGAGAACAGAGCGACGG 59.329 52.381 0.00 0.00 0.00 4.79
1966 2394 2.539953 GGTGATAGAGAACAGAGCGACG 60.540 54.545 0.00 0.00 0.00 5.12
1967 2395 2.539953 CGGTGATAGAGAACAGAGCGAC 60.540 54.545 0.00 0.00 0.00 5.19
1968 2396 1.671328 CGGTGATAGAGAACAGAGCGA 59.329 52.381 0.00 0.00 0.00 4.93
1969 2397 1.862008 GCGGTGATAGAGAACAGAGCG 60.862 57.143 0.00 0.00 0.00 5.03
1970 2398 1.407258 AGCGGTGATAGAGAACAGAGC 59.593 52.381 0.00 0.00 0.00 4.09
1971 2399 2.223688 CCAGCGGTGATAGAGAACAGAG 60.224 54.545 17.83 0.00 0.00 3.35
1972 2400 1.751351 CCAGCGGTGATAGAGAACAGA 59.249 52.381 17.83 0.00 0.00 3.41
1973 2401 1.804372 GCCAGCGGTGATAGAGAACAG 60.804 57.143 17.83 0.00 0.00 3.16
1974 2402 0.175760 GCCAGCGGTGATAGAGAACA 59.824 55.000 17.83 0.00 0.00 3.18
1975 2403 0.461961 AGCCAGCGGTGATAGAGAAC 59.538 55.000 17.83 0.00 0.00 3.01
1976 2404 0.747255 GAGCCAGCGGTGATAGAGAA 59.253 55.000 17.83 0.00 0.00 2.87
1977 2405 0.106469 AGAGCCAGCGGTGATAGAGA 60.106 55.000 17.83 0.00 0.00 3.10
1978 2406 0.313672 GAGAGCCAGCGGTGATAGAG 59.686 60.000 17.83 0.00 0.00 2.43
1979 2407 1.109920 GGAGAGCCAGCGGTGATAGA 61.110 60.000 17.83 0.00 0.00 1.98
1980 2408 1.365633 GGAGAGCCAGCGGTGATAG 59.634 63.158 17.83 0.00 0.00 2.08
1981 2409 2.134287 GGGAGAGCCAGCGGTGATA 61.134 63.158 17.83 0.00 35.15 2.15
1982 2410 3.474570 GGGAGAGCCAGCGGTGAT 61.475 66.667 17.83 3.79 35.15 3.06
2006 2434 2.985847 GTGACAGTTGGGCCCAGC 60.986 66.667 30.12 30.12 0.00 4.85
2007 2435 2.282462 GGTGACAGTTGGGCCCAG 60.282 66.667 26.87 16.81 0.00 4.45
2008 2436 4.263572 CGGTGACAGTTGGGCCCA 62.264 66.667 24.45 24.45 0.00 5.36
2010 2438 4.643387 AGCGGTGACAGTTGGGCC 62.643 66.667 0.00 0.00 0.00 5.80
2011 2439 3.357079 CAGCGGTGACAGTTGGGC 61.357 66.667 9.50 0.00 0.00 5.36
2012 2440 2.111043 ACAGCGGTGACAGTTGGG 59.889 61.111 23.44 0.00 0.00 4.12
2022 2450 4.760047 GGCGATCCACACAGCGGT 62.760 66.667 0.00 0.00 0.00 5.68
2023 2451 4.758251 TGGCGATCCACACAGCGG 62.758 66.667 0.00 0.00 37.47 5.52
2024 2452 3.190849 CTGGCGATCCACACAGCG 61.191 66.667 0.00 0.00 37.47 5.18
2025 2453 2.821366 CCTGGCGATCCACACAGC 60.821 66.667 0.00 0.00 37.47 4.40
2026 2454 2.821366 GCCTGGCGATCCACACAG 60.821 66.667 1.35 0.00 37.47 3.66
2027 2455 3.321648 AGCCTGGCGATCCACACA 61.322 61.111 13.96 0.00 37.47 3.72
2028 2456 2.821366 CAGCCTGGCGATCCACAC 60.821 66.667 13.96 0.00 37.47 3.82
2029 2457 4.100084 CCAGCCTGGCGATCCACA 62.100 66.667 13.96 0.00 37.47 4.17
2030 2458 4.864334 CCCAGCCTGGCGATCCAC 62.864 72.222 13.96 0.00 37.47 4.02
2051 2479 4.918201 GGGCGGGATCGAAGGCAG 62.918 72.222 0.00 0.00 39.00 4.85
2054 2482 4.891727 CACGGGCGGGATCGAAGG 62.892 72.222 0.00 0.00 39.00 3.46
2065 2493 3.757248 ATGGAGGAATCGCACGGGC 62.757 63.158 0.00 0.00 0.00 6.13
2066 2494 1.595382 GATGGAGGAATCGCACGGG 60.595 63.158 0.00 0.00 0.00 5.28
2067 2495 1.143838 TGATGGAGGAATCGCACGG 59.856 57.895 0.00 0.00 0.00 4.94
2068 2496 1.482621 CGTGATGGAGGAATCGCACG 61.483 60.000 0.00 0.00 42.17 5.34
2069 2497 0.179111 TCGTGATGGAGGAATCGCAC 60.179 55.000 0.00 0.00 36.98 5.34
2070 2498 0.752658 ATCGTGATGGAGGAATCGCA 59.247 50.000 0.00 0.00 36.98 5.10
2071 2499 1.423395 GATCGTGATGGAGGAATCGC 58.577 55.000 0.00 0.00 34.40 4.58
2072 2500 1.266989 TCGATCGTGATGGAGGAATCG 59.733 52.381 15.94 0.00 0.00 3.34
2073 2501 2.294791 ACTCGATCGTGATGGAGGAATC 59.705 50.000 22.80 0.00 44.64 2.52
2074 2502 2.294791 GACTCGATCGTGATGGAGGAAT 59.705 50.000 22.80 5.35 44.64 3.01
2075 2503 1.676529 GACTCGATCGTGATGGAGGAA 59.323 52.381 22.80 0.00 44.64 3.36
2076 2504 1.309950 GACTCGATCGTGATGGAGGA 58.690 55.000 22.80 0.00 44.64 3.71
2077 2505 1.025041 TGACTCGATCGTGATGGAGG 58.975 55.000 22.80 7.81 44.64 4.30
2078 2506 2.455032 GTTGACTCGATCGTGATGGAG 58.545 52.381 22.80 17.12 45.47 3.86
2079 2507 1.202143 CGTTGACTCGATCGTGATGGA 60.202 52.381 22.80 0.00 0.00 3.41
2080 2508 1.191944 CGTTGACTCGATCGTGATGG 58.808 55.000 22.80 8.35 0.00 3.51
2081 2509 0.567968 GCGTTGACTCGATCGTGATG 59.432 55.000 22.80 10.62 0.00 3.07
2082 2510 0.525668 GGCGTTGACTCGATCGTGAT 60.526 55.000 22.80 7.91 0.00 3.06
2083 2511 1.154093 GGCGTTGACTCGATCGTGA 60.154 57.895 22.80 0.00 0.00 4.35
2084 2512 2.497092 CGGCGTTGACTCGATCGTG 61.497 63.158 15.94 15.53 0.00 4.35
2085 2513 2.202440 CGGCGTTGACTCGATCGT 60.202 61.111 15.94 0.00 0.00 3.73
2086 2514 2.202440 ACGGCGTTGACTCGATCG 60.202 61.111 6.77 9.36 36.08 3.69
2087 2515 2.789203 GCACGGCGTTGACTCGATC 61.789 63.158 11.19 0.00 0.00 3.69
2088 2516 2.809601 GCACGGCGTTGACTCGAT 60.810 61.111 11.19 0.00 0.00 3.59
2104 2532 3.959991 GAAGGGAGTGGACCAGCGC 62.960 68.421 0.00 0.00 0.00 5.92
2105 2533 2.266055 GAAGGGAGTGGACCAGCG 59.734 66.667 0.00 0.00 0.00 5.18
2106 2534 2.266055 CGAAGGGAGTGGACCAGC 59.734 66.667 0.00 0.00 0.00 4.85
2107 2535 2.232298 GAGCGAAGGGAGTGGACCAG 62.232 65.000 0.00 0.00 0.00 4.00
2108 2536 2.203788 AGCGAAGGGAGTGGACCA 60.204 61.111 0.00 0.00 0.00 4.02
2109 2537 2.579738 GAGCGAAGGGAGTGGACC 59.420 66.667 0.00 0.00 0.00 4.46
2110 2538 2.579738 GGAGCGAAGGGAGTGGAC 59.420 66.667 0.00 0.00 0.00 4.02
2111 2539 2.683933 GGGAGCGAAGGGAGTGGA 60.684 66.667 0.00 0.00 0.00 4.02
2112 2540 4.148825 CGGGAGCGAAGGGAGTGG 62.149 72.222 0.00 0.00 0.00 4.00
2113 2541 2.356818 GATCGGGAGCGAAGGGAGTG 62.357 65.000 0.00 0.00 0.00 3.51
2114 2542 2.042843 ATCGGGAGCGAAGGGAGT 60.043 61.111 0.00 0.00 0.00 3.85
2115 2543 2.731374 GATCGGGAGCGAAGGGAG 59.269 66.667 0.00 0.00 0.00 4.30
2116 2544 3.217017 CGATCGGGAGCGAAGGGA 61.217 66.667 7.38 0.00 43.75 4.20
2117 2545 3.217017 TCGATCGGGAGCGAAGGG 61.217 66.667 16.41 0.00 46.74 3.95
2121 2549 1.437772 GAACTCTCGATCGGGAGCGA 61.438 60.000 38.40 15.90 46.20 4.93
2122 2550 1.009449 GAACTCTCGATCGGGAGCG 60.009 63.158 38.40 21.88 46.20 5.03
2123 2551 1.360911 GGAACTCTCGATCGGGAGC 59.639 63.158 38.40 25.36 46.20 4.70
2125 2553 1.613610 AGGGAACTCTCGATCGGGA 59.386 57.895 18.37 18.37 32.90 5.14
2126 2554 4.261701 AGGGAACTCTCGATCGGG 57.738 61.111 16.41 13.07 32.90 5.14
2137 2565 1.457009 CGATCGGGAGGAGAGGGAAC 61.457 65.000 7.38 0.00 0.00 3.62
2138 2566 1.152735 CGATCGGGAGGAGAGGGAA 60.153 63.158 7.38 0.00 0.00 3.97
2139 2567 2.516405 CGATCGGGAGGAGAGGGA 59.484 66.667 7.38 0.00 0.00 4.20
2140 2568 3.299190 GCGATCGGGAGGAGAGGG 61.299 72.222 18.30 0.00 0.00 4.30
2141 2569 3.665226 CGCGATCGGGAGGAGAGG 61.665 72.222 26.36 0.00 0.00 3.69
2142 2570 2.899044 GACGCGATCGGGAGGAGAG 61.899 68.421 35.09 1.39 40.69 3.20
2143 2571 2.900838 GACGCGATCGGGAGGAGA 60.901 66.667 35.09 0.00 40.69 3.71
2144 2572 3.967335 GGACGCGATCGGGAGGAG 61.967 72.222 35.09 2.91 40.69 3.69
2145 2573 4.807631 TGGACGCGATCGGGAGGA 62.808 66.667 35.09 16.50 40.69 3.71
2146 2574 4.570663 GTGGACGCGATCGGGAGG 62.571 72.222 35.09 0.00 40.69 4.30
2147 2575 3.822192 TGTGGACGCGATCGGGAG 61.822 66.667 35.09 4.45 40.69 4.30
2148 2576 4.124351 GTGTGGACGCGATCGGGA 62.124 66.667 35.09 13.29 40.69 5.14
2150 2578 3.716539 ATGGTGTGGACGCGATCGG 62.717 63.158 15.93 9.59 40.69 4.18
2151 2579 2.202743 ATGGTGTGGACGCGATCG 60.203 61.111 15.93 11.69 42.43 3.69
2152 2580 2.813179 GCATGGTGTGGACGCGATC 61.813 63.158 15.93 6.63 0.00 3.69
2153 2581 2.819595 GCATGGTGTGGACGCGAT 60.820 61.111 15.93 0.00 0.00 4.58
2154 2582 3.932580 GAGCATGGTGTGGACGCGA 62.933 63.158 15.93 0.00 0.00 5.87
2155 2583 3.490759 GAGCATGGTGTGGACGCG 61.491 66.667 3.53 3.53 0.00 6.01
2156 2584 3.127533 GGAGCATGGTGTGGACGC 61.128 66.667 0.00 0.00 0.00 5.19
2157 2585 2.436646 GGGAGCATGGTGTGGACG 60.437 66.667 0.00 0.00 0.00 4.79
2158 2586 1.377725 CAGGGAGCATGGTGTGGAC 60.378 63.158 0.00 0.00 0.00 4.02
2159 2587 0.915872 ATCAGGGAGCATGGTGTGGA 60.916 55.000 0.00 0.00 0.00 4.02
2160 2588 0.465097 GATCAGGGAGCATGGTGTGG 60.465 60.000 0.00 0.00 0.00 4.17
2161 2589 0.465097 GGATCAGGGAGCATGGTGTG 60.465 60.000 0.00 0.00 0.00 3.82
2162 2590 1.918253 GGATCAGGGAGCATGGTGT 59.082 57.895 0.00 0.00 0.00 4.16
2163 2591 1.227764 CGGATCAGGGAGCATGGTG 60.228 63.158 0.00 0.00 0.00 4.17
2164 2592 2.446848 CCGGATCAGGGAGCATGGT 61.447 63.158 3.59 0.00 0.00 3.55
2165 2593 1.486997 ATCCGGATCAGGGAGCATGG 61.487 60.000 12.38 0.00 36.91 3.66
2166 2594 0.036577 GATCCGGATCAGGGAGCATG 60.037 60.000 34.65 0.00 39.72 4.06
2167 2595 0.472543 TGATCCGGATCAGGGAGCAT 60.473 55.000 37.61 4.61 44.45 3.79
2168 2596 1.075301 TGATCCGGATCAGGGAGCA 60.075 57.895 37.61 18.16 46.90 4.26
2169 2597 3.876873 TGATCCGGATCAGGGAGC 58.123 61.111 37.61 15.74 42.42 4.70
2183 2611 4.722700 AACGGCTGGCGGCTTGAT 62.723 61.111 27.26 3.10 41.46 2.57
2196 2624 2.925162 GAATCCAGCGAGGGGAACGG 62.925 65.000 0.00 0.00 38.09 4.44
2197 2625 1.521681 GAATCCAGCGAGGGGAACG 60.522 63.158 0.00 0.00 38.09 3.95
2198 2626 1.153147 GGAATCCAGCGAGGGGAAC 60.153 63.158 0.00 0.00 38.09 3.62
2199 2627 1.615124 TGGAATCCAGCGAGGGGAA 60.615 57.895 0.00 0.00 38.09 3.97
2200 2628 2.040442 TGGAATCCAGCGAGGGGA 59.960 61.111 0.00 0.00 39.14 4.81
2201 2629 2.190578 GTGGAATCCAGCGAGGGG 59.809 66.667 0.27 0.00 38.24 4.79
2202 2630 2.190578 GGTGGAATCCAGCGAGGG 59.809 66.667 16.19 0.00 42.21 4.30
2208 2636 2.593468 ATCACGGCGGTGGAATCCAG 62.593 60.000 22.51 0.00 44.50 3.86
2209 2637 2.587322 GATCACGGCGGTGGAATCCA 62.587 60.000 22.51 0.00 44.50 3.41
2210 2638 1.887707 GATCACGGCGGTGGAATCC 60.888 63.158 22.51 0.00 44.50 3.01
2211 2639 0.876342 GAGATCACGGCGGTGGAATC 60.876 60.000 22.51 18.09 44.50 2.52
2212 2640 1.144057 GAGATCACGGCGGTGGAAT 59.856 57.895 22.51 10.93 44.50 3.01
2213 2641 2.577059 GAGATCACGGCGGTGGAA 59.423 61.111 22.51 6.42 44.50 3.53
2214 2642 3.458163 GGAGATCACGGCGGTGGA 61.458 66.667 22.51 6.21 44.50 4.02
2215 2643 4.530857 GGGAGATCACGGCGGTGG 62.531 72.222 22.51 0.00 44.50 4.61
2216 2644 3.461773 AGGGAGATCACGGCGGTG 61.462 66.667 17.69 17.69 45.78 4.94
2217 2645 3.461773 CAGGGAGATCACGGCGGT 61.462 66.667 13.24 0.00 0.00 5.68
2218 2646 4.227134 CCAGGGAGATCACGGCGG 62.227 72.222 13.24 0.00 0.00 6.13
2219 2647 1.672854 TAACCAGGGAGATCACGGCG 61.673 60.000 4.80 4.80 0.00 6.46
2220 2648 0.759346 ATAACCAGGGAGATCACGGC 59.241 55.000 0.00 0.00 0.00 5.68
2221 2649 1.762957 ACATAACCAGGGAGATCACGG 59.237 52.381 0.00 0.00 0.00 4.94
2222 2650 2.543861 CGACATAACCAGGGAGATCACG 60.544 54.545 0.00 0.00 0.00 4.35
2223 2651 2.803492 GCGACATAACCAGGGAGATCAC 60.803 54.545 0.00 0.00 0.00 3.06
2224 2652 1.412710 GCGACATAACCAGGGAGATCA 59.587 52.381 0.00 0.00 0.00 2.92
2225 2653 1.689273 AGCGACATAACCAGGGAGATC 59.311 52.381 0.00 0.00 0.00 2.75
2226 2654 1.689273 GAGCGACATAACCAGGGAGAT 59.311 52.381 0.00 0.00 0.00 2.75
2227 2655 1.112113 GAGCGACATAACCAGGGAGA 58.888 55.000 0.00 0.00 0.00 3.71
2228 2656 0.105039 GGAGCGACATAACCAGGGAG 59.895 60.000 0.00 0.00 0.00 4.30
2229 2657 1.335132 GGGAGCGACATAACCAGGGA 61.335 60.000 0.00 0.00 0.00 4.20
2230 2658 1.146263 GGGAGCGACATAACCAGGG 59.854 63.158 0.00 0.00 0.00 4.45
2231 2659 0.469917 ATGGGAGCGACATAACCAGG 59.530 55.000 0.00 0.00 34.23 4.45
2232 2660 1.414181 AGATGGGAGCGACATAACCAG 59.586 52.381 0.00 0.00 34.23 4.00
2233 2661 1.138859 CAGATGGGAGCGACATAACCA 59.861 52.381 0.00 0.00 35.39 3.67
2234 2662 1.871080 CAGATGGGAGCGACATAACC 58.129 55.000 0.00 0.00 0.00 2.85
2235 2663 1.221414 GCAGATGGGAGCGACATAAC 58.779 55.000 0.00 0.00 0.00 1.89
2236 2664 0.829990 TGCAGATGGGAGCGACATAA 59.170 50.000 0.00 0.00 0.00 1.90
2237 2665 0.390492 CTGCAGATGGGAGCGACATA 59.610 55.000 8.42 0.00 0.00 2.29
2238 2666 1.145598 CTGCAGATGGGAGCGACAT 59.854 57.895 8.42 0.00 0.00 3.06
2239 2667 1.830587 AACTGCAGATGGGAGCGACA 61.831 55.000 23.35 0.00 38.79 4.35
2240 2668 1.078848 AACTGCAGATGGGAGCGAC 60.079 57.895 23.35 0.00 38.79 5.19
2241 2669 1.219124 GAACTGCAGATGGGAGCGA 59.781 57.895 23.35 0.00 38.79 4.93
2242 2670 2.169789 CGAACTGCAGATGGGAGCG 61.170 63.158 23.35 3.98 38.79 5.03
2243 2671 2.467826 GCGAACTGCAGATGGGAGC 61.468 63.158 23.35 12.55 45.45 4.70
2244 2672 3.805267 GCGAACTGCAGATGGGAG 58.195 61.111 23.35 6.38 45.45 4.30
2254 2682 2.720758 CTTCAGACGCGGCGAACTG 61.721 63.158 30.75 30.75 36.72 3.16
2255 2683 2.430921 CTTCAGACGCGGCGAACT 60.431 61.111 30.94 22.77 0.00 3.01
2256 2684 2.717809 GACTTCAGACGCGGCGAAC 61.718 63.158 30.94 20.93 0.00 3.95
2257 2685 2.430244 GACTTCAGACGCGGCGAA 60.430 61.111 30.94 14.85 0.00 4.70
2258 2686 3.610791 CTGACTTCAGACGCGGCGA 62.611 63.158 30.94 6.75 46.59 5.54
2259 2687 3.175240 CTGACTTCAGACGCGGCG 61.175 66.667 22.36 22.36 46.59 6.46
2260 2688 3.482783 GCTGACTTCAGACGCGGC 61.483 66.667 12.47 7.86 46.59 6.53
2261 2689 2.811317 GGCTGACTTCAGACGCGG 60.811 66.667 12.47 0.00 46.59 6.46
2266 2694 4.742201 GGCGCGGCTGACTTCAGA 62.742 66.667 27.05 0.00 46.59 3.27
2269 2697 4.742201 TCTGGCGCGGCTGACTTC 62.742 66.667 32.86 2.71 0.00 3.01
2270 2698 4.087892 ATCTGGCGCGGCTGACTT 62.088 61.111 37.23 23.68 0.00 3.01
2271 2699 4.521062 GATCTGGCGCGGCTGACT 62.521 66.667 37.23 26.84 0.00 3.41
2292 2720 4.201122 GAGGATGGCAGCTGGGGG 62.201 72.222 17.12 0.00 0.00 5.40
2293 2721 4.559063 CGAGGATGGCAGCTGGGG 62.559 72.222 17.12 0.00 0.00 4.96
2312 2740 4.609018 ATCCGGCGCAGGAATCCG 62.609 66.667 32.64 13.23 44.50 4.18
2313 2741 2.666526 GATCCGGCGCAGGAATCC 60.667 66.667 32.64 20.00 44.50 3.01
2314 2742 2.666526 GGATCCGGCGCAGGAATC 60.667 66.667 32.64 25.97 44.50 2.52
2315 2743 4.256180 GGGATCCGGCGCAGGAAT 62.256 66.667 32.64 20.35 44.50 3.01



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.