AutoCloner

Multiple sequence alignment - TraesCS3A01G232400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G232400	chr3A	100.000	2501	0	0	1	2501	434004503	434007003	0.000000e+00	4619.0
1	TraesCS3A01G232400	chr3D	93.858	1742	65	20	277	1981	301421962	301420226	0.000000e+00	2586.0
2	TraesCS3A01G232400	chr3D	93.595	484	30	1	2018	2501	121908142	121907660	0.000000e+00	721.0
3	TraesCS3A01G232400	chr3D	91.228	228	15	3	3	226	301422196	301421970	3.130000e-79	305.0
4	TraesCS3A01G232400	chr3B	92.616	1747	62	27	277	1981	419796731	419798452	0.000000e+00	2449.0
5	TraesCS3A01G232400	chr3B	93.548	124	8	0	2	125	419796079	419796202	4.250000e-43	185.0
6	TraesCS3A01G232400	chr5D	92.131	521	40	1	1980	2500	495290030	495289511	0.000000e+00	734.0
7	TraesCS3A01G232400	chr5D	90.840	524	41	5	1982	2501	466658090	466658610	0.000000e+00	695.0
8	TraesCS3A01G232400	chr5D	90.152	528	45	6	1980	2501	389916069	389916595	0.000000e+00	680.0
9	TraesCS3A01G232400	chr7D	92.857	490	32	3	2015	2501	597508498	597508987	0.000000e+00	708.0
10	TraesCS3A01G232400	chr7D	100.000	28	0	0	8	35	296959684	296959711	4.000000e-03	52.8
11	TraesCS3A01G232400	chr2D	93.515	478	28	3	2025	2501	5201171	5200696	0.000000e+00	708.0
12	TraesCS3A01G232400	chr2D	92.961	483	31	3	2021	2501	548974221	548973740	0.000000e+00	701.0
13	TraesCS3A01G232400	chr5A	90.280	535	45	7	1971	2500	312574138	312573606	0.000000e+00	693.0
14	TraesCS3A01G232400	chr6A	90.323	527	42	9	1980	2500	5075079	5075602	0.000000e+00	682.0
15	TraesCS3A01G232400	chr6A	100.000	28	0	0	8	35	91193553	91193526	4.000000e-03	52.8
16	TraesCS3A01G232400	chr6A	100.000	28	0	0	8	35	363660285	363660312	4.000000e-03	52.8
17	TraesCS3A01G232400	chr7A	100.000	28	0	0	8	35	304984568	304984595	4.000000e-03	52.8
18	TraesCS3A01G232400	chr6D	100.000	28	0	0	8	35	172678707	172678680	4.000000e-03	52.8
19	TraesCS3A01G232400	chr6B	100.000	28	0	0	8	35	72249756	72249729	4.000000e-03	52.8
20	TraesCS3A01G232400	chr4B	100.000	28	0	0	8	35	553270395	553270368	4.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G232400	chr3A	434004503	434007003	2500	False	4619.0	4619	100.000	1	2501	1	chr3A.!!$F1	2500
1	TraesCS3A01G232400	chr3D	301420226	301422196	1970	True	1445.5	2586	92.543	3	1981	2	chr3D.!!$R2	1978
2	TraesCS3A01G232400	chr3B	419796079	419798452	2373	False	1317.0	2449	93.082	2	1981	2	chr3B.!!$F1	1979
3	TraesCS3A01G232400	chr5D	495289511	495290030	519	True	734.0	734	92.131	1980	2500	1	chr5D.!!$R1	520
4	TraesCS3A01G232400	chr5D	466658090	466658610	520	False	695.0	695	90.840	1982	2501	1	chr5D.!!$F2	519
5	TraesCS3A01G232400	chr5D	389916069	389916595	526	False	680.0	680	90.152	1980	2501	1	chr5D.!!$F1	521
6	TraesCS3A01G232400	chr5A	312573606	312574138	532	True	693.0	693	90.280	1971	2500	1	chr5A.!!$R1	529
7	TraesCS3A01G232400	chr6A	5075079	5075602	523	False	682.0	682	90.323	1980	2500	1	chr6A.!!$F1	520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
968	1408	0.108138	CCAAACCCAGCCTACGAGAG	60.108	60.0	0.0	0.0	0.0	3.2	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2357	2837	1.227438	CTCCAACAACGTCCACGGT	60.227	57.895	3.81	0.0	44.95	4.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
91	92	7.934120	GGGAGAAGATTAGCAACTTGTGTATAT	59.066	37.037	0.00	0.00	0.00	0.86
149	566	3.777106	TCCACAAAGATGCTTCTCTGT	57.223	42.857	2.84	2.84	33.32	3.41
158	575	1.522580	GCTTCTCTGTCCCATCGCC	60.523	63.158	0.00	0.00	0.00	5.54
162	579	1.142748	CTCTGTCCCATCGCCTCAC	59.857	63.158	0.00	0.00	0.00	3.51
170	587	2.771943	TCCCATCGCCTCACTAGAAATT	59.228	45.455	0.00	0.00	0.00	1.82
191	608	1.140312	AAACCTCTGGAGTTGGCTGA	58.860	50.000	0.00	0.00	0.00	4.26
210	631	4.330074	GCTGATACTGTTATTTGCACGAGT	59.670	41.667	0.00	0.00	0.00	4.18
217	638	4.602995	TGTTATTTGCACGAGTTGTTTCC	58.397	39.130	0.00	0.00	0.00	3.13
226	647	4.758561	CACGAGTTGTTTCCGTAAGAAAG	58.241	43.478	0.00	0.00	45.11	2.62
227	648	4.505191	CACGAGTTGTTTCCGTAAGAAAGA	59.495	41.667	0.00	0.00	45.11	2.52
231	652	6.345882	CGAGTTGTTTCCGTAAGAAAGAGAAG	60.346	42.308	0.00	0.00	45.11	2.85
233	654	4.062991	TGTTTCCGTAAGAAAGAGAAGCC	58.937	43.478	0.00	0.00	45.11	4.35
234	655	4.062991	GTTTCCGTAAGAAAGAGAAGCCA	58.937	43.478	0.00	0.00	45.11	4.75
235	656	3.314541	TCCGTAAGAAAGAGAAGCCAC	57.685	47.619	0.00	0.00	43.02	5.01
236	657	2.897969	TCCGTAAGAAAGAGAAGCCACT	59.102	45.455	0.00	0.00	43.02	4.00
237	658	4.084287	TCCGTAAGAAAGAGAAGCCACTA	58.916	43.478	0.00	0.00	43.02	2.74
238	659	4.158025	TCCGTAAGAAAGAGAAGCCACTAG	59.842	45.833	0.00	0.00	43.02	2.57
239	660	4.082136	CCGTAAGAAAGAGAAGCCACTAGT	60.082	45.833	0.00	0.00	43.02	2.57
240	661	4.859798	CGTAAGAAAGAGAAGCCACTAGTG	59.140	45.833	16.34	16.34	43.02	2.74
241	662	4.965200	AAGAAAGAGAAGCCACTAGTGT	57.035	40.909	21.18	2.97	0.00	3.55
242	663	6.349115	CGTAAGAAAGAGAAGCCACTAGTGTA	60.349	42.308	21.18	0.00	43.02	2.90
243	664	6.420913	AAGAAAGAGAAGCCACTAGTGTAA	57.579	37.500	21.18	0.00	0.00	2.41
244	665	6.420913	AGAAAGAGAAGCCACTAGTGTAAA	57.579	37.500	21.18	0.00	0.00	2.01
245	666	6.827727	AGAAAGAGAAGCCACTAGTGTAAAA	58.172	36.000	21.18	0.00	0.00	1.52
246	667	7.280356	AGAAAGAGAAGCCACTAGTGTAAAAA	58.720	34.615	21.18	0.00	0.00	1.94
271	692	9.801873	AAAATGTTTCAATATTATGGGACGAAG	57.198	29.630	0.00	0.00	0.00	3.79
272	693	6.935741	TGTTTCAATATTATGGGACGAAGG	57.064	37.500	0.00	0.00	0.00	3.46
273	694	5.825679	TGTTTCAATATTATGGGACGAAGGG	59.174	40.000	0.00	0.00	0.00	3.95
274	695	4.634012	TCAATATTATGGGACGAAGGGG	57.366	45.455	0.00	0.00	0.00	4.79
275	696	3.329520	TCAATATTATGGGACGAAGGGGG	59.670	47.826	0.00	0.00	0.00	5.40
304	728	3.538591	CATTAGCTGGATTGCTGACTCA	58.461	45.455	0.00	0.00	43.87	3.41
308	732	1.338484	GCTGGATTGCTGACTCAGACA	60.338	52.381	10.45	4.83	32.44	3.41
313	737	4.276678	TGGATTGCTGACTCAGACAAAAAG	59.723	41.667	10.45	0.00	33.78	2.27
314	738	4.276926	GGATTGCTGACTCAGACAAAAAGT	59.723	41.667	10.45	0.00	33.78	2.66
372	800	9.414295	CCAACGACAATACCTAATAAATCGATA	57.586	33.333	0.00	0.00	32.83	2.92
400	829	9.093970	TGACTGATTAAGTGATTATTTACGGTG	57.906	33.333	0.00	0.00	40.07	4.94
469	898	1.122632	TAAGTCCACAACGCCCTGGA	61.123	55.000	0.00	0.00	33.95	3.86
481	914	0.324943	GCCCTGGACAGCTTAGTCAA	59.675	55.000	6.54	0.00	40.29	3.18
485	918	2.808543	CCTGGACAGCTTAGTCAAACAC	59.191	50.000	6.54	0.00	40.29	3.32
486	919	3.466836	CTGGACAGCTTAGTCAAACACA	58.533	45.455	6.54	0.00	40.29	3.72
517	950	2.501316	TCACTCACCACATCATTCCGAT	59.499	45.455	0.00	0.00	33.27	4.18
674	1108	2.800736	GCCGGAATGCCATGTCAC	59.199	61.111	5.05	0.00	0.00	3.67
737	1171	1.272490	TCTCGGTAACTTGTGAGCTGG	59.728	52.381	0.00	0.00	0.00	4.85
755	1189	2.880890	CTGGGACAAGAAAACACCTCAG	59.119	50.000	0.00	0.00	38.70	3.35
815	1255	7.489113	GCACCTTCCATGAAATGTTTATTACAG	59.511	37.037	0.00	0.00	44.81	2.74
875	1315	4.742201	GCAGCTCTCGCCAACGGA	62.742	66.667	0.00	0.00	40.63	4.69
897	1337	3.653344	TGCATAAAAGGATCGAGATCGG	58.347	45.455	1.91	0.00	38.69	4.18
898	1338	3.069586	TGCATAAAAGGATCGAGATCGGT	59.930	43.478	1.91	0.00	38.69	4.69
968	1408	0.108138	CCAAACCCAGCCTACGAGAG	60.108	60.000	0.00	0.00	0.00	3.20
1518	1964	4.005902	CATGGATGCACTGCACCA	57.994	55.556	20.65	20.65	43.04	4.17
1557	2003	5.313623	GCGAATGATGTGTTAGTGTTACAC	58.686	41.667	7.50	7.50	44.73	2.90
1727	2173	2.882876	CTGTGCTGATTGCTGGGC	59.117	61.111	0.00	0.00	43.37	5.36
1800	2246	4.198028	AGAGAAAGAATGGCCAAAATGC	57.802	40.909	10.96	0.00	0.00	3.56
1802	2248	3.930848	GAGAAAGAATGGCCAAAATGCTG	59.069	43.478	10.96	0.00	0.00	4.41
1992	2462	5.587844	AGCAATATTACAAGAGGTCTGCTTG	59.412	40.000	0.00	0.00	46.20	4.01
2079	2555	2.307309	CGTATGCGGCGTACCCATG	61.307	63.158	22.84	8.32	31.62	3.66
2093	2569	1.227380	CCATGCAGGTAGAGCCGAC	60.227	63.158	0.00	0.00	43.70	4.79
2095	2571	1.685765	ATGCAGGTAGAGCCGACCA	60.686	57.895	0.00	0.00	43.70	4.02
2100	2576	2.633509	GGTAGAGCCGACCACACGT	61.634	63.158	0.00	0.00	36.91	4.49
2191	2671	2.909457	ATCACGCGGCCCATTCCAAT	62.909	55.000	12.47	0.00	0.00	3.16
2254	2734	1.006102	CCTTTCGCCGCCGATCTAT	60.006	57.895	0.00	0.00	43.97	1.98
2277	2757	1.031571	TGATCACGCTGCCAATTCCC	61.032	55.000	0.00	0.00	0.00	3.97
2288	2768	1.682849	CAATTCCCACGTCTCCCCA	59.317	57.895	0.00	0.00	0.00	4.96
2357	2837	4.731853	TCACCCGGGATCTGGCCA	62.732	66.667	32.02	4.71	0.00	5.36
2393	2873	4.111016	TCGCCAGCCGTACGTGAG	62.111	66.667	15.21	0.00	38.35	3.51

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	9.733556	TTCTATTAAAGAAACCAGCATTCTACA	57.266	29.630	0.00	0.00	41.35	2.74
64	65	4.202461	ACACAAGTTGCTAATCTTCTCCCA	60.202	41.667	1.81	0.00	0.00	4.37
72	73	6.584954	CGCAGATATACACAAGTTGCTAATC	58.415	40.000	1.81	0.05	0.00	1.75
78	79	4.864916	AAGCGCAGATATACACAAGTTG	57.135	40.909	11.47	0.00	0.00	3.16
91	92	1.171549	TGCACAATCCAAAGCGCAGA	61.172	50.000	11.47	0.14	0.00	4.26
149	566	1.860641	TTTCTAGTGAGGCGATGGGA	58.139	50.000	0.00	0.00	0.00	4.37
158	575	6.467677	TCCAGAGGTTTGAATTTCTAGTGAG	58.532	40.000	0.00	0.00	0.00	3.51
162	579	6.150140	CCAACTCCAGAGGTTTGAATTTCTAG	59.850	42.308	0.00	0.00	0.00	2.43
170	587	1.140312	AGCCAACTCCAGAGGTTTGA	58.860	50.000	0.00	0.00	0.00	2.69
191	608	6.554334	AACAACTCGTGCAAATAACAGTAT	57.446	33.333	0.00	0.00	0.00	2.12
210	631	4.514066	GGCTTCTCTTTCTTACGGAAACAA	59.486	41.667	0.00	0.00	38.81	2.83
217	638	4.859798	CACTAGTGGCTTCTCTTTCTTACG	59.140	45.833	15.49	0.00	0.00	3.18
245	666	9.801873	CTTCGTCCCATAATATTGAAACATTTT	57.198	29.630	0.00	0.00	0.00	1.82
246	667	8.413229	CCTTCGTCCCATAATATTGAAACATTT	58.587	33.333	0.00	0.00	0.00	2.32
247	668	7.014230	CCCTTCGTCCCATAATATTGAAACATT	59.986	37.037	0.00	0.00	0.00	2.71
248	669	6.490040	CCCTTCGTCCCATAATATTGAAACAT	59.510	38.462	0.00	0.00	0.00	2.71
249	670	5.825679	CCCTTCGTCCCATAATATTGAAACA	59.174	40.000	0.00	0.00	0.00	2.83
250	671	5.240844	CCCCTTCGTCCCATAATATTGAAAC	59.759	44.000	0.00	0.00	0.00	2.78
251	672	5.381757	CCCCTTCGTCCCATAATATTGAAA	58.618	41.667	0.00	0.00	0.00	2.69
252	673	4.202524	CCCCCTTCGTCCCATAATATTGAA	60.203	45.833	0.00	0.00	0.00	2.69
253	674	3.329520	CCCCCTTCGTCCCATAATATTGA	59.670	47.826	0.00	0.00	0.00	2.57
254	675	3.073946	ACCCCCTTCGTCCCATAATATTG	59.926	47.826	0.00	0.00	0.00	1.90
255	676	3.332968	ACCCCCTTCGTCCCATAATATT	58.667	45.455	0.00	0.00	0.00	1.28
256	677	2.999928	ACCCCCTTCGTCCCATAATAT	58.000	47.619	0.00	0.00	0.00	1.28
257	678	2.500269	ACCCCCTTCGTCCCATAATA	57.500	50.000	0.00	0.00	0.00	0.98
258	679	2.500269	TACCCCCTTCGTCCCATAAT	57.500	50.000	0.00	0.00	0.00	1.28
259	680	2.500269	ATACCCCCTTCGTCCCATAA	57.500	50.000	0.00	0.00	0.00	1.90
260	681	2.440253	CAAATACCCCCTTCGTCCCATA	59.560	50.000	0.00	0.00	0.00	2.74
261	682	1.214424	CAAATACCCCCTTCGTCCCAT	59.786	52.381	0.00	0.00	0.00	4.00
262	683	0.621609	CAAATACCCCCTTCGTCCCA	59.378	55.000	0.00	0.00	0.00	4.37
263	684	0.750546	GCAAATACCCCCTTCGTCCC	60.751	60.000	0.00	0.00	0.00	4.46
264	685	0.750546	GGCAAATACCCCCTTCGTCC	60.751	60.000	0.00	0.00	0.00	4.79
265	686	0.034863	TGGCAAATACCCCCTTCGTC	60.035	55.000	0.00	0.00	0.00	4.20
266	687	0.629058	ATGGCAAATACCCCCTTCGT	59.371	50.000	0.00	0.00	0.00	3.85
267	688	1.775385	AATGGCAAATACCCCCTTCG	58.225	50.000	0.00	0.00	0.00	3.79
268	689	2.628178	GCTAATGGCAAATACCCCCTTC	59.372	50.000	0.00	0.00	41.35	3.46
269	690	2.247372	AGCTAATGGCAAATACCCCCTT	59.753	45.455	0.00	0.00	44.79	3.95
270	691	1.859574	AGCTAATGGCAAATACCCCCT	59.140	47.619	0.00	0.00	44.79	4.79
271	692	1.963515	CAGCTAATGGCAAATACCCCC	59.036	52.381	0.00	0.00	44.79	5.40
272	693	1.963515	CCAGCTAATGGCAAATACCCC	59.036	52.381	0.00	0.00	43.83	4.95
302	726	2.172505	TCAGCAGGGACTTTTTGTCTGA	59.827	45.455	0.00	0.00	44.74	3.27
304	728	3.297134	TTCAGCAGGGACTTTTTGTCT	57.703	42.857	0.00	0.00	44.74	3.41
308	732	3.312736	TCCTTTCAGCAGGGACTTTTT	57.687	42.857	0.00	0.00	34.60	1.94
313	737	0.250901	TGCTTCCTTTCAGCAGGGAC	60.251	55.000	0.00	0.00	42.49	4.46
314	738	2.154139	TGCTTCCTTTCAGCAGGGA	58.846	52.632	0.00	0.00	42.49	4.20
315	739	4.828409	TGCTTCCTTTCAGCAGGG	57.172	55.556	0.00	0.00	42.49	4.45
422	851	0.109919	GATCCGGTCAACCAAAACGC	60.110	55.000	0.00	0.00	35.14	4.84
469	898	2.031683	GCGTTGTGTTTGACTAAGCTGT	59.968	45.455	0.00	0.00	33.35	4.40
551	984	2.981859	AGACACGGTCTCAAACTGTT	57.018	45.000	1.23	0.00	45.54	3.16
560	993	0.250814	AGAACTCGGAGACACGGTCT	60.251	55.000	12.86	6.29	46.42	3.85
674	1108	4.024387	CCGGACCATACCAATTATTCAACG	60.024	45.833	0.00	0.00	0.00	4.10
715	1149	2.731976	CAGCTCACAAGTTACCGAGAAC	59.268	50.000	0.00	0.00	0.00	3.01
737	1171	2.576615	AGCTGAGGTGTTTTCTTGTCC	58.423	47.619	0.00	0.00	0.00	4.02
755	1189	1.002087	AGGTGTACAGCAGGTGTTAGC	59.998	52.381	25.75	10.22	40.94	3.09
868	1308	3.303990	CGATCCTTTTATGCATCCGTTGG	60.304	47.826	0.19	0.65	0.00	3.77
869	1309	3.559655	TCGATCCTTTTATGCATCCGTTG	59.440	43.478	0.19	0.00	0.00	4.10
875	1315	4.248859	CCGATCTCGATCCTTTTATGCAT	58.751	43.478	3.79	3.79	43.02	3.96
897	1337	2.279741	TGCTGAATGCTAATCCGACAC	58.720	47.619	0.00	0.00	43.37	3.67
898	1338	2.677836	GTTGCTGAATGCTAATCCGACA	59.322	45.455	0.00	0.00	43.37	4.35
940	1380	1.544246	GGCTGGGTTTGGTGTATGTTC	59.456	52.381	0.00	0.00	0.00	3.18
1242	1688	3.857038	GCGTCCCTTATCCGGCCA	61.857	66.667	2.24	0.00	0.00	5.36
1485	1931	1.146041	ATGCTATCGCGCCCTTGAA	59.854	52.632	0.00	0.00	39.65	2.69
1518	1964	2.665603	GCCTTCCTCCAAGTCGCT	59.334	61.111	0.00	0.00	0.00	4.93
1559	2005	9.710900	CCAACTGATCTTACATATACAAGCATA	57.289	33.333	0.00	0.00	0.00	3.14
1699	2145	1.783284	TCAGCACAGCGTAGACAAAG	58.217	50.000	0.00	0.00	0.00	2.77
1727	2173	2.617308	CTGTAATTGCCTGATCAGCTGG	59.383	50.000	17.76	6.14	38.55	4.85
1800	2246	6.779117	ACATGCGAGAAAATTTGTAGATCAG	58.221	36.000	0.00	0.00	0.00	2.90
1802	2248	6.775088	TGACATGCGAGAAAATTTGTAGATC	58.225	36.000	0.00	0.00	0.00	2.75
2009	2479	5.104569	CCAAAATGCCCTTATACATTGGGTT	60.105	40.000	0.00	0.00	42.77	4.11
2010	2480	4.408596	CCAAAATGCCCTTATACATTGGGT	59.591	41.667	0.00	0.00	42.77	4.51
2011	2481	4.202346	CCCAAAATGCCCTTATACATTGGG	60.202	45.833	5.91	5.91	37.76	4.12
2016	2492	3.107402	TGCCCAAAATGCCCTTATACA	57.893	42.857	0.00	0.00	0.00	2.29
2050	2526	2.356553	GCATACGGCGCGGGATAA	60.357	61.111	19.75	2.15	0.00	1.75
2079	2555	2.184579	GTGGTCGGCTCTACCTGC	59.815	66.667	0.00	0.00	37.91	4.85
2100	2576	2.242572	CGGTCGTATCGGCTCGAGA	61.243	63.158	18.75	0.00	39.91	4.04
2115	2591	3.537874	GGGTAGATGCGAGCCGGT	61.538	66.667	1.90	0.00	0.00	5.28
2242	2722	2.214181	ATCACGGATAGATCGGCGGC	62.214	60.000	7.21	0.00	0.00	6.53
2277	2757	4.530857	GCCGGATGGGGAGACGTG	62.531	72.222	5.05	0.00	35.78	4.49
2357	2837	1.227438	CTCCAACAACGTCCACGGT	60.227	57.895	3.81	0.00	44.95	4.83
2381	2861	4.436998	GCCAGCTCACGTACGGCT	62.437	66.667	21.06	15.63	39.73	5.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.