Multiple sequence alignment - TraesCS3A01G232000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G232000 chr3A 100.000 2470 0 0 1 2470 433426500 433428969 0.000000e+00 4562.0
1 TraesCS3A01G232000 chr3A 82.972 323 44 9 230 543 532849296 532848976 5.200000e-72 281.0
2 TraesCS3A01G232000 chr3A 81.847 314 48 8 239 544 466814170 466813858 3.150000e-64 255.0
3 TraesCS3A01G232000 chr3A 79.545 308 51 8 222 519 628890868 628891173 2.490000e-50 209.0
4 TraesCS3A01G232000 chr3A 94.828 58 3 0 2116 2173 433428560 433428617 9.410000e-15 91.6
5 TraesCS3A01G232000 chr3A 94.828 58 3 0 2061 2118 433428615 433428672 9.410000e-15 91.6
6 TraesCS3A01G232000 chr3B 87.313 2073 182 40 23 2058 419280289 419282317 0.000000e+00 2296.0
7 TraesCS3A01G232000 chr3D 89.870 1698 117 25 51 1719 301772849 301771178 0.000000e+00 2132.0
8 TraesCS3A01G232000 chr3D 80.887 293 51 5 254 544 100502864 100503153 2.470000e-55 226.0
9 TraesCS3A01G232000 chr3D 80.328 183 31 5 2284 2465 4497358 4497536 1.540000e-27 134.0
10 TraesCS3A01G232000 chr3D 97.500 40 1 0 1 40 301773055 301773016 4.410000e-08 69.4
11 TraesCS3A01G232000 chr5B 86.364 418 50 5 1704 2118 579168502 579168089 1.350000e-122 449.0
12 TraesCS3A01G232000 chr5B 82.415 381 60 5 1741 2118 191094153 191094529 2.370000e-85 326.0
13 TraesCS3A01G232000 chr5B 88.546 227 26 0 1111 1337 36602520 36602294 2.420000e-70 276.0
14 TraesCS3A01G232000 chr5B 83.843 229 34 3 1111 1337 37046654 37046881 5.350000e-52 215.0
15 TraesCS3A01G232000 chr5B 82.427 239 36 4 1100 1337 36891361 36891594 1.160000e-48 204.0
16 TraesCS3A01G232000 chr6D 85.851 417 52 5 1704 2118 458605300 458604889 1.050000e-118 436.0
17 TraesCS3A01G232000 chr6D 90.625 64 6 0 2116 2179 458604946 458604883 4.380000e-13 86.1
18 TraesCS3A01G232000 chr2D 85.372 417 55 4 1704 2118 73216359 73215947 6.310000e-116 427.0
19 TraesCS3A01G232000 chr2D 92.188 64 5 0 2116 2179 73216004 73215941 9.410000e-15 91.6
20 TraesCS3A01G232000 chr5A 85.645 411 51 6 1704 2111 544639816 544640221 2.270000e-115 425.0
21 TraesCS3A01G232000 chr5A 82.249 338 45 11 212 543 656051551 656051223 6.730000e-71 278.0
22 TraesCS3A01G232000 chr5A 88.210 229 23 3 1111 1337 30634376 30634602 1.130000e-68 270.0
23 TraesCS3A01G232000 chr5A 83.810 210 32 2 1129 1337 30659923 30660131 5.390000e-47 198.0
24 TraesCS3A01G232000 chr5A 100.000 28 0 0 2220 2247 12581046 12581019 4.000000e-03 52.8
25 TraesCS3A01G232000 chr6A 83.213 417 58 5 1704 2118 480315839 480315433 3.000000e-99 372.0
26 TraesCS3A01G232000 chr6A 91.429 210 17 1 2256 2465 110490918 110491126 1.120000e-73 287.0
27 TraesCS3A01G232000 chr6A 91.429 210 17 1 2256 2465 224017232 224017440 1.120000e-73 287.0
28 TraesCS3A01G232000 chr6A 87.879 66 8 0 2116 2181 480315490 480315425 7.320000e-11 78.7
29 TraesCS3A01G232000 chr6A 97.222 36 1 0 2220 2255 502927845 502927880 7.380000e-06 62.1
30 TraesCS3A01G232000 chr4A 91.429 210 17 1 2256 2465 517793209 517793417 1.120000e-73 287.0
31 TraesCS3A01G232000 chr4A 90.995 211 17 2 2256 2465 19755099 19755308 1.450000e-72 283.0
32 TraesCS3A01G232000 chr1A 91.080 213 18 1 2256 2468 94006510 94006299 1.120000e-73 287.0
33 TraesCS3A01G232000 chr1A 90.610 213 19 1 2256 2468 223297114 223296903 5.200000e-72 281.0
34 TraesCS3A01G232000 chr1A 90.698 215 15 5 2256 2468 550782853 550783064 5.200000e-72 281.0
35 TraesCS3A01G232000 chr2A 90.698 215 19 1 2256 2470 194120935 194120722 4.020000e-73 285.0
36 TraesCS3A01G232000 chr2A 89.815 216 21 1 2247 2462 470536343 470536557 2.420000e-70 276.0
37 TraesCS3A01G232000 chr6B 81.145 297 43 10 222 506 439434160 439434455 2.470000e-55 226.0
38 TraesCS3A01G232000 chr6B 90.476 63 6 0 2116 2178 697601676 697601614 1.570000e-12 84.2
39 TraesCS3A01G232000 chr2B 78.679 333 55 12 230 547 3417875 3418206 8.950000e-50 207.0
40 TraesCS3A01G232000 chr5D 84.286 210 31 2 1129 1337 42086921 42087129 1.160000e-48 204.0
41 TraesCS3A01G232000 chr5D 84.286 210 31 2 1129 1337 42205818 42206026 1.160000e-48 204.0
42 TraesCS3A01G232000 chr7D 100.000 36 0 0 2220 2255 164850240 164850275 1.590000e-07 67.6
43 TraesCS3A01G232000 chr4B 96.970 33 1 0 2220 2252 188205949 188205981 3.430000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G232000 chr3A 433426500 433428969 2469 False 1581.733333 4562 96.552 1 2470 3 chr3A.!!$F2 2469
1 TraesCS3A01G232000 chr3B 419280289 419282317 2028 False 2296.000000 2296 87.313 23 2058 1 chr3B.!!$F1 2035
2 TraesCS3A01G232000 chr3D 301771178 301773055 1877 True 1100.700000 2132 93.685 1 1719 2 chr3D.!!$R1 1718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 810 0.533951 AGGACGTATCGGGTTTCACC 59.466 55.0 0.0 0.0 37.6 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 2234 0.110147 CTATAGCGTCGAGGAAGCGG 60.11 60.0 9.75 0.0 41.56 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 237 4.569966 GTCTACATGATTGAAGCACCAGAG 59.430 45.833 0.00 0.00 0.00 3.35
85 242 4.350368 TGATTGAAGCACCAGAGTGTAA 57.650 40.909 0.00 0.00 46.35 2.41
86 243 4.065088 TGATTGAAGCACCAGAGTGTAAC 58.935 43.478 0.00 0.00 46.35 2.50
112 269 9.009327 CACAATCATTGTACGGTAATTTTCATC 57.991 33.333 1.72 0.00 43.23 2.92
116 273 8.330466 TCATTGTACGGTAATTTTCATCAGTT 57.670 30.769 0.00 0.00 0.00 3.16
208 365 6.772716 ACATATAGAATGGCGTTTTGGATCTT 59.227 34.615 0.00 0.00 0.00 2.40
211 368 2.214376 ATGGCGTTTTGGATCTTGGA 57.786 45.000 0.00 0.00 0.00 3.53
212 369 1.988293 TGGCGTTTTGGATCTTGGAA 58.012 45.000 0.00 0.00 0.00 3.53
213 370 2.311463 TGGCGTTTTGGATCTTGGAAA 58.689 42.857 0.00 0.00 0.00 3.13
214 371 2.695666 TGGCGTTTTGGATCTTGGAAAA 59.304 40.909 0.00 0.00 0.00 2.29
215 372 3.323403 TGGCGTTTTGGATCTTGGAAAAT 59.677 39.130 0.00 0.00 0.00 1.82
216 373 4.202305 TGGCGTTTTGGATCTTGGAAAATT 60.202 37.500 0.00 0.00 0.00 1.82
217 374 4.388773 GGCGTTTTGGATCTTGGAAAATTC 59.611 41.667 0.00 0.00 0.00 2.17
260 432 8.904099 AGTAAACAAGGATATAAGGTGTATGC 57.096 34.615 0.00 0.00 0.00 3.14
268 440 6.927381 AGGATATAAGGTGTATGCGTGTAAAC 59.073 38.462 0.00 0.00 0.00 2.01
304 476 0.673644 AATGCAGTGGCGACCTGTAC 60.674 55.000 8.31 0.00 45.35 2.90
360 533 3.806316 ATCACGTGTTAAAAAGCCTCG 57.194 42.857 16.51 0.00 0.00 4.63
361 534 2.823984 TCACGTGTTAAAAAGCCTCGA 58.176 42.857 16.51 0.00 0.00 4.04
388 561 3.500448 TGCACAACCCTTATCTCAACA 57.500 42.857 0.00 0.00 0.00 3.33
448 621 5.822519 TGCCCTCATGTATGTCAGTATTTTC 59.177 40.000 0.00 0.00 0.00 2.29
451 624 7.067494 GCCCTCATGTATGTCAGTATTTTCTTT 59.933 37.037 0.00 0.00 0.00 2.52
452 625 9.613428 CCCTCATGTATGTCAGTATTTTCTTTA 57.387 33.333 0.00 0.00 0.00 1.85
530 703 1.222936 CTCCATGAAGCTCGGCCTT 59.777 57.895 0.00 0.00 0.00 4.35
582 755 9.643693 CAATTATTAGTGCTTTTTCTGATGGTT 57.356 29.630 0.00 0.00 0.00 3.67
637 810 0.533951 AGGACGTATCGGGTTTCACC 59.466 55.000 0.00 0.00 37.60 4.02
647 820 4.336889 TCGGGTTTCACCATCATCTATC 57.663 45.455 0.00 0.00 41.02 2.08
664 843 5.728637 TCTATCATCAGATAACGGCATGT 57.271 39.130 0.00 0.00 36.35 3.21
667 846 1.070376 CATCAGATAACGGCATGTGCG 60.070 52.381 0.00 0.00 43.26 5.34
695 874 5.182001 GTGTCAATTCACAAACTGGAGCTAT 59.818 40.000 0.00 0.00 38.12 2.97
726 906 1.071385 ACAAACTGGTGCTGAGGAGAG 59.929 52.381 0.00 0.00 0.00 3.20
743 923 9.800433 CTGAGGAGAGCATGTTATTATACATAG 57.200 37.037 0.00 0.00 36.64 2.23
774 954 1.062002 GATGTGCAATTACGTGTCCCG 59.938 52.381 0.00 0.00 44.03 5.14
890 1074 1.078848 AGCAAGCGGAGTCATCACC 60.079 57.895 0.00 0.00 0.00 4.02
1056 1248 4.153655 CGCATCTATCCATCCATCAAACTG 59.846 45.833 0.00 0.00 0.00 3.16
1061 1253 0.374758 CCATCCATCAAACTGCGACG 59.625 55.000 0.00 0.00 0.00 5.12
1065 1258 0.040514 CCATCAAACTGCGACGCAAA 60.041 50.000 24.51 7.43 38.41 3.68
1352 1545 1.148157 AATCGACCGCAGCATCTTCG 61.148 55.000 0.00 0.00 0.00 3.79
1436 1629 1.104630 GAGATTCGTCTCCCCGACTT 58.895 55.000 0.00 0.00 40.59 3.01
1444 1637 1.004918 CTCCCCGACTTTCAGCGTT 60.005 57.895 0.00 0.00 0.00 4.84
1472 1665 8.597227 GTTTAATAAAGCGAGGTTTTTGTTGTT 58.403 29.630 5.58 0.00 0.00 2.83
1526 1719 6.971527 ACCAAATATTTGTTCGTCGATGTA 57.028 33.333 23.24 0.00 36.45 2.29
1539 1732 4.272018 TCGTCGATGTAAAGTAGAGTAGCC 59.728 45.833 4.21 0.00 0.00 3.93
1540 1733 4.272991 CGTCGATGTAAAGTAGAGTAGCCT 59.727 45.833 0.00 0.00 0.00 4.58
1548 1741 7.284820 TGTAAAGTAGAGTAGCCTTTTTGGTT 58.715 34.615 0.00 0.00 38.35 3.67
1640 1833 4.438148 CTCCCTCCGATCTTCTCTTTTTC 58.562 47.826 0.00 0.00 0.00 2.29
1676 1869 8.877195 TCCTTATGTAATGTTTCCTCCTATACC 58.123 37.037 0.00 0.00 0.00 2.73
1755 1948 8.702438 CAATCATTCATTACAAACTTTGTCACC 58.298 33.333 10.49 0.00 44.12 4.02
1758 1951 6.723298 TTCATTACAAACTTTGTCACCCAT 57.277 33.333 10.49 0.00 44.12 4.00
1760 1953 5.830457 TCATTACAAACTTTGTCACCCATGA 59.170 36.000 10.49 9.00 44.12 3.07
1820 2013 8.641499 TTATCAAAACTAAACTTTGCAACCTG 57.359 30.769 0.00 0.00 34.43 4.00
1821 2014 5.415221 TCAAAACTAAACTTTGCAACCTGG 58.585 37.500 0.00 0.00 34.43 4.45
1822 2015 5.046950 TCAAAACTAAACTTTGCAACCTGGT 60.047 36.000 0.00 0.00 34.43 4.00
1823 2016 4.385358 AACTAAACTTTGCAACCTGGTG 57.615 40.909 0.00 0.00 0.00 4.17
1827 2020 1.833934 CTTTGCAACCTGGTGGCCT 60.834 57.895 23.11 0.00 36.63 5.19
1829 2022 2.296945 TTTGCAACCTGGTGGCCTCT 62.297 55.000 23.11 0.00 36.63 3.69
1841 2034 1.751351 GTGGCCTCTAAATTTGCCCTC 59.249 52.381 13.14 4.88 43.35 4.30
1842 2035 1.357420 TGGCCTCTAAATTTGCCCTCA 59.643 47.619 13.14 0.00 43.35 3.86
1843 2036 2.024080 TGGCCTCTAAATTTGCCCTCAT 60.024 45.455 13.14 0.00 43.35 2.90
1862 2055 7.417116 GCCCTCATGTTGATCTTTGAAATATGT 60.417 37.037 0.00 0.00 0.00 2.29
1885 2078 5.382618 AAATTCACCAGCATCTTTGAGAC 57.617 39.130 0.00 0.00 0.00 3.36
1892 2085 4.702131 ACCAGCATCTTTGAGACATTTACC 59.298 41.667 0.00 0.00 0.00 2.85
1895 2088 4.702131 AGCATCTTTGAGACATTTACCACC 59.298 41.667 0.00 0.00 0.00 4.61
1896 2089 4.437390 GCATCTTTGAGACATTTACCACCG 60.437 45.833 0.00 0.00 0.00 4.94
1900 2093 1.349688 TGAGACATTTACCACCGCCTT 59.650 47.619 0.00 0.00 0.00 4.35
1919 2112 5.619981 CGCCTTCTTTAAATCAACAAGGGAG 60.620 44.000 0.00 0.00 31.09 4.30
1923 2116 5.321927 TCTTTAAATCAACAAGGGAGGACC 58.678 41.667 0.00 0.00 40.67 4.46
1946 2139 5.104776 CCTGTCCATACAATCTCTTCCAAGA 60.105 44.000 0.00 0.00 34.49 3.02
1950 2143 6.314896 GTCCATACAATCTCTTCCAAGAACAG 59.685 42.308 0.00 0.00 34.03 3.16
1954 2147 3.625649 ATCTCTTCCAAGAACAGAGGC 57.374 47.619 0.00 0.00 35.65 4.70
1955 2148 2.329267 TCTCTTCCAAGAACAGAGGCA 58.671 47.619 0.00 0.00 35.65 4.75
1956 2149 2.301296 TCTCTTCCAAGAACAGAGGCAG 59.699 50.000 0.00 0.00 35.65 4.85
1960 2153 1.133823 TCCAAGAACAGAGGCAGCAAA 60.134 47.619 0.00 0.00 0.00 3.68
1966 2159 2.046507 AGAGGCAGCAAAGGAGCG 60.047 61.111 0.00 0.00 40.15 5.03
1971 2164 1.712977 GGCAGCAAAGGAGCGATCAG 61.713 60.000 1.84 0.00 40.15 2.90
1975 2168 2.079925 AGCAAAGGAGCGATCAGTTTC 58.920 47.619 1.84 0.00 40.15 2.78
1976 2169 1.131315 GCAAAGGAGCGATCAGTTTCC 59.869 52.381 1.84 0.00 0.00 3.13
1977 2170 2.704572 CAAAGGAGCGATCAGTTTCCT 58.295 47.619 1.84 0.00 41.73 3.36
1978 2171 2.675348 CAAAGGAGCGATCAGTTTCCTC 59.325 50.000 1.84 0.00 39.09 3.71
1979 2172 0.827368 AGGAGCGATCAGTTTCCTCC 59.173 55.000 1.84 0.00 41.84 4.30
1985 2178 3.441572 AGCGATCAGTTTCCTCCAAAATG 59.558 43.478 0.00 0.00 40.72 2.32
1990 2183 4.088634 TCAGTTTCCTCCAAAATGATGGG 58.911 43.478 0.00 0.00 42.69 4.00
1991 2184 2.833943 AGTTTCCTCCAAAATGATGGGC 59.166 45.455 0.00 0.00 41.05 5.36
1993 2186 2.852714 TCCTCCAAAATGATGGGCAT 57.147 45.000 0.00 0.00 41.05 4.40
2003 2196 3.939740 ATGATGGGCATGTCTAGTGTT 57.060 42.857 0.00 0.00 35.42 3.32
2004 2197 2.989909 TGATGGGCATGTCTAGTGTTG 58.010 47.619 0.00 0.00 0.00 3.33
2006 2199 3.517500 TGATGGGCATGTCTAGTGTTGTA 59.482 43.478 0.00 0.00 0.00 2.41
2007 2200 3.328382 TGGGCATGTCTAGTGTTGTAC 57.672 47.619 0.00 0.00 0.00 2.90
2008 2201 2.903784 TGGGCATGTCTAGTGTTGTACT 59.096 45.455 0.00 0.00 43.56 2.73
2021 2214 5.839621 AGTGTTGTACTAATATACAGGCCG 58.160 41.667 0.00 0.00 38.04 6.13
2022 2215 5.595542 AGTGTTGTACTAATATACAGGCCGA 59.404 40.000 0.00 0.00 38.04 5.54
2023 2216 6.267014 AGTGTTGTACTAATATACAGGCCGAT 59.733 38.462 0.00 0.00 38.04 4.18
2027 2221 6.724351 TGTACTAATATACAGGCCGATAGGA 58.276 40.000 0.00 0.00 43.89 2.94
2049 2243 1.861575 CGCTCTAAATTCCGCTTCCTC 59.138 52.381 0.00 0.00 0.00 3.71
2050 2244 1.861575 GCTCTAAATTCCGCTTCCTCG 59.138 52.381 0.00 0.00 0.00 4.63
2051 2245 2.481449 GCTCTAAATTCCGCTTCCTCGA 60.481 50.000 0.00 0.00 0.00 4.04
2052 2246 3.117046 CTCTAAATTCCGCTTCCTCGAC 58.883 50.000 0.00 0.00 0.00 4.20
2053 2247 1.852895 CTAAATTCCGCTTCCTCGACG 59.147 52.381 0.00 0.00 0.00 5.12
2054 2248 1.359459 AAATTCCGCTTCCTCGACGC 61.359 55.000 0.00 0.00 0.00 5.19
2055 2249 2.227089 AATTCCGCTTCCTCGACGCT 62.227 55.000 0.00 0.00 0.00 5.07
2056 2250 1.381928 ATTCCGCTTCCTCGACGCTA 61.382 55.000 0.00 0.00 0.00 4.26
2057 2251 1.381928 TTCCGCTTCCTCGACGCTAT 61.382 55.000 0.00 0.00 0.00 2.97
2058 2252 0.533531 TCCGCTTCCTCGACGCTATA 60.534 55.000 0.00 0.00 0.00 1.31
2059 2253 0.110147 CCGCTTCCTCGACGCTATAG 60.110 60.000 0.00 0.00 0.00 1.31
2060 2254 0.726452 CGCTTCCTCGACGCTATAGC 60.726 60.000 15.09 15.09 37.78 2.97
2061 2255 0.311165 GCTTCCTCGACGCTATAGCA 59.689 55.000 23.99 3.96 42.21 3.49
2062 2256 1.269102 GCTTCCTCGACGCTATAGCAA 60.269 52.381 23.99 8.20 42.21 3.91
2063 2257 2.798499 GCTTCCTCGACGCTATAGCAAA 60.798 50.000 23.99 5.49 42.21 3.68
2064 2258 2.486951 TCCTCGACGCTATAGCAAAC 57.513 50.000 23.99 12.87 42.21 2.93
2065 2259 2.022195 TCCTCGACGCTATAGCAAACT 58.978 47.619 23.99 3.37 42.21 2.66
2066 2260 2.033049 TCCTCGACGCTATAGCAAACTC 59.967 50.000 23.99 11.12 42.21 3.01
2067 2261 2.033550 CCTCGACGCTATAGCAAACTCT 59.966 50.000 23.99 0.00 42.21 3.24
2068 2262 3.250280 CCTCGACGCTATAGCAAACTCTA 59.750 47.826 23.99 4.58 42.21 2.43
2069 2263 4.261072 CCTCGACGCTATAGCAAACTCTAA 60.261 45.833 23.99 0.81 42.21 2.10
2070 2264 5.434352 TCGACGCTATAGCAAACTCTAAT 57.566 39.130 23.99 0.00 42.21 1.73
2071 2265 6.348295 CCTCGACGCTATAGCAAACTCTAATA 60.348 42.308 23.99 0.00 42.21 0.98
2072 2266 6.369005 TCGACGCTATAGCAAACTCTAATAC 58.631 40.000 23.99 1.26 42.21 1.89
2073 2267 6.017687 TCGACGCTATAGCAAACTCTAATACA 60.018 38.462 23.99 0.00 42.21 2.29
2074 2268 6.635641 CGACGCTATAGCAAACTCTAATACAA 59.364 38.462 23.99 0.00 42.21 2.41
2075 2269 7.326305 CGACGCTATAGCAAACTCTAATACAAT 59.674 37.037 23.99 0.00 42.21 2.71
2076 2270 8.522178 ACGCTATAGCAAACTCTAATACAATC 57.478 34.615 23.99 0.00 42.21 2.67
2077 2271 8.361139 ACGCTATAGCAAACTCTAATACAATCT 58.639 33.333 23.99 0.00 42.21 2.40
2078 2272 8.855279 CGCTATAGCAAACTCTAATACAATCTC 58.145 37.037 23.99 0.00 42.21 2.75
2079 2273 9.698309 GCTATAGCAAACTCTAATACAATCTCA 57.302 33.333 20.01 0.00 41.59 3.27
2084 2278 9.160496 AGCAAACTCTAATACAATCTCAGAAAG 57.840 33.333 0.00 0.00 0.00 2.62
2085 2279 9.155975 GCAAACTCTAATACAATCTCAGAAAGA 57.844 33.333 0.00 0.00 38.72 2.52
2101 2295 9.573166 TCTCAGAAAGAAAGAATAATTTGTCCA 57.427 29.630 0.00 0.00 0.00 4.02
2102 2296 9.617975 CTCAGAAAGAAAGAATAATTTGTCCAC 57.382 33.333 0.00 0.00 0.00 4.02
2103 2297 9.130661 TCAGAAAGAAAGAATAATTTGTCCACA 57.869 29.630 0.00 0.00 0.00 4.17
2104 2298 9.748708 CAGAAAGAAAGAATAATTTGTCCACAA 57.251 29.630 0.00 0.00 0.00 3.33
2107 2301 9.492973 AAAGAAAGAATAATTTGTCCACAATGG 57.507 29.630 0.00 0.00 39.43 3.16
2108 2302 8.193953 AGAAAGAATAATTTGTCCACAATGGT 57.806 30.769 0.00 0.00 39.03 3.55
2109 2303 8.650490 AGAAAGAATAATTTGTCCACAATGGTT 58.350 29.630 0.00 0.00 39.03 3.67
2110 2304 9.271828 GAAAGAATAATTTGTCCACAATGGTTT 57.728 29.630 0.00 0.00 39.03 3.27
2111 2305 8.831715 AAGAATAATTTGTCCACAATGGTTTC 57.168 30.769 0.00 0.00 39.03 2.78
2112 2306 8.193953 AGAATAATTTGTCCACAATGGTTTCT 57.806 30.769 0.00 0.00 39.03 2.52
2113 2307 8.650490 AGAATAATTTGTCCACAATGGTTTCTT 58.350 29.630 0.00 0.00 39.03 2.52
2114 2308 9.921637 GAATAATTTGTCCACAATGGTTTCTTA 57.078 29.630 0.00 0.00 39.03 2.10
2115 2309 9.705290 AATAATTTGTCCACAATGGTTTCTTAC 57.295 29.630 0.00 0.00 39.03 2.34
2116 2310 6.723298 ATTTGTCCACAATGGTTTCTTACA 57.277 33.333 0.00 0.00 39.03 2.41
2117 2311 6.531503 TTTGTCCACAATGGTTTCTTACAA 57.468 33.333 0.00 0.00 39.03 2.41
2118 2312 6.531503 TTGTCCACAATGGTTTCTTACAAA 57.468 33.333 0.00 0.00 39.03 2.83
2119 2313 5.897050 TGTCCACAATGGTTTCTTACAAAC 58.103 37.500 0.00 0.00 39.03 2.93
2120 2314 5.654650 TGTCCACAATGGTTTCTTACAAACT 59.345 36.000 0.00 0.00 39.03 2.66
2121 2315 6.183360 TGTCCACAATGGTTTCTTACAAACTC 60.183 38.462 0.00 0.00 39.03 3.01
2122 2316 6.039382 GTCCACAATGGTTTCTTACAAACTCT 59.961 38.462 0.00 0.00 39.03 3.24
2123 2317 7.227910 GTCCACAATGGTTTCTTACAAACTCTA 59.772 37.037 0.00 0.00 39.03 2.43
2124 2318 7.776030 TCCACAATGGTTTCTTACAAACTCTAA 59.224 33.333 0.00 0.00 39.03 2.10
2125 2319 8.576442 CCACAATGGTTTCTTACAAACTCTAAT 58.424 33.333 0.00 0.00 31.35 1.73
2162 2356 9.492973 AAAGAAAGAATAATTTGTCCACAATGG 57.507 29.630 0.00 0.00 39.43 3.16
2163 2357 8.193953 AGAAAGAATAATTTGTCCACAATGGT 57.806 30.769 0.00 0.00 39.03 3.55
2164 2358 8.650490 AGAAAGAATAATTTGTCCACAATGGTT 58.350 29.630 0.00 0.00 39.03 3.67
2165 2359 9.271828 GAAAGAATAATTTGTCCACAATGGTTT 57.728 29.630 0.00 0.00 39.03 3.27
2166 2360 8.831715 AAGAATAATTTGTCCACAATGGTTTC 57.168 30.769 0.00 0.00 39.03 2.78
2167 2361 8.193953 AGAATAATTTGTCCACAATGGTTTCT 57.806 30.769 0.00 0.00 39.03 2.52
2168 2362 8.306761 AGAATAATTTGTCCACAATGGTTTCTC 58.693 33.333 0.00 0.00 39.03 2.87
2169 2363 5.867903 AATTTGTCCACAATGGTTTCTCA 57.132 34.783 0.00 0.00 39.03 3.27
2170 2364 4.647424 TTTGTCCACAATGGTTTCTCAC 57.353 40.909 0.00 0.00 39.03 3.51
2171 2365 3.289407 TGTCCACAATGGTTTCTCACA 57.711 42.857 0.00 0.00 39.03 3.58
2172 2366 3.625853 TGTCCACAATGGTTTCTCACAA 58.374 40.909 0.00 0.00 39.03 3.33
2173 2367 3.380004 TGTCCACAATGGTTTCTCACAAC 59.620 43.478 0.00 0.00 39.03 3.32
2174 2368 2.955660 TCCACAATGGTTTCTCACAACC 59.044 45.455 0.00 0.00 45.88 3.77
2179 2373 3.505835 GGTTTCTCACAACCACCCA 57.494 52.632 0.00 0.00 45.12 4.51
2180 2374 1.029681 GGTTTCTCACAACCACCCAC 58.970 55.000 0.00 0.00 45.12 4.61
2181 2375 1.409661 GGTTTCTCACAACCACCCACT 60.410 52.381 0.00 0.00 45.12 4.00
2182 2376 1.947456 GTTTCTCACAACCACCCACTC 59.053 52.381 0.00 0.00 0.00 3.51
2183 2377 1.507140 TTCTCACAACCACCCACTCT 58.493 50.000 0.00 0.00 0.00 3.24
2184 2378 1.507140 TCTCACAACCACCCACTCTT 58.493 50.000 0.00 0.00 0.00 2.85
2185 2379 2.684943 TCTCACAACCACCCACTCTTA 58.315 47.619 0.00 0.00 0.00 2.10
2186 2380 3.248024 TCTCACAACCACCCACTCTTAT 58.752 45.455 0.00 0.00 0.00 1.73
2187 2381 3.007940 TCTCACAACCACCCACTCTTATG 59.992 47.826 0.00 0.00 0.00 1.90
2188 2382 2.708861 TCACAACCACCCACTCTTATGT 59.291 45.455 0.00 0.00 0.00 2.29
2189 2383 3.137544 TCACAACCACCCACTCTTATGTT 59.862 43.478 0.00 0.00 0.00 2.71
2190 2384 3.253188 CACAACCACCCACTCTTATGTTG 59.747 47.826 0.00 0.00 38.01 3.33
2191 2385 3.137544 ACAACCACCCACTCTTATGTTGA 59.862 43.478 0.00 0.00 36.15 3.18
2192 2386 4.202567 ACAACCACCCACTCTTATGTTGAT 60.203 41.667 0.00 0.00 36.15 2.57
2193 2387 5.013704 ACAACCACCCACTCTTATGTTGATA 59.986 40.000 0.00 0.00 36.15 2.15
2194 2388 5.975988 ACCACCCACTCTTATGTTGATAT 57.024 39.130 0.00 0.00 0.00 1.63
2195 2389 6.327386 ACCACCCACTCTTATGTTGATATT 57.673 37.500 0.00 0.00 0.00 1.28
2196 2390 7.446106 ACCACCCACTCTTATGTTGATATTA 57.554 36.000 0.00 0.00 0.00 0.98
2197 2391 7.867921 ACCACCCACTCTTATGTTGATATTAA 58.132 34.615 0.00 0.00 0.00 1.40
2198 2392 8.502738 ACCACCCACTCTTATGTTGATATTAAT 58.497 33.333 0.00 0.00 0.00 1.40
2226 2420 8.849543 TGTAGACCTTTAATATTGTACTCCCT 57.150 34.615 0.00 0.00 0.00 4.20
2227 2421 9.275572 TGTAGACCTTTAATATTGTACTCCCTT 57.724 33.333 0.00 0.00 0.00 3.95
2228 2422 9.761504 GTAGACCTTTAATATTGTACTCCCTTC 57.238 37.037 0.00 0.00 0.00 3.46
2229 2423 8.625467 AGACCTTTAATATTGTACTCCCTTCT 57.375 34.615 0.00 0.00 0.00 2.85
2230 2424 9.059023 AGACCTTTAATATTGTACTCCCTTCTT 57.941 33.333 0.00 0.00 0.00 2.52
2231 2425 9.682465 GACCTTTAATATTGTACTCCCTTCTTT 57.318 33.333 0.00 0.00 0.00 2.52
2236 2430 9.816787 TTAATATTGTACTCCCTTCTTTTTGGT 57.183 29.630 0.00 0.00 0.00 3.67
2237 2431 8.721133 AATATTGTACTCCCTTCTTTTTGGTT 57.279 30.769 0.00 0.00 0.00 3.67
2238 2432 8.721133 ATATTGTACTCCCTTCTTTTTGGTTT 57.279 30.769 0.00 0.00 0.00 3.27
2239 2433 9.816787 ATATTGTACTCCCTTCTTTTTGGTTTA 57.183 29.630 0.00 0.00 0.00 2.01
2240 2434 8.721133 ATTGTACTCCCTTCTTTTTGGTTTAT 57.279 30.769 0.00 0.00 0.00 1.40
2241 2435 9.816787 ATTGTACTCCCTTCTTTTTGGTTTATA 57.183 29.630 0.00 0.00 0.00 0.98
2242 2436 8.857694 TGTACTCCCTTCTTTTTGGTTTATAG 57.142 34.615 0.00 0.00 0.00 1.31
2243 2437 7.886446 TGTACTCCCTTCTTTTTGGTTTATAGG 59.114 37.037 0.00 0.00 0.00 2.57
2244 2438 6.253758 ACTCCCTTCTTTTTGGTTTATAGGG 58.746 40.000 0.00 0.00 41.98 3.53
2245 2439 5.020795 TCCCTTCTTTTTGGTTTATAGGGC 58.979 41.667 0.00 0.00 40.71 5.19
2246 2440 5.023452 CCCTTCTTTTTGGTTTATAGGGCT 58.977 41.667 0.00 0.00 35.11 5.19
2247 2441 5.483937 CCCTTCTTTTTGGTTTATAGGGCTT 59.516 40.000 0.00 0.00 35.11 4.35
2248 2442 6.666113 CCCTTCTTTTTGGTTTATAGGGCTTA 59.334 38.462 0.00 0.00 35.11 3.09
2249 2443 7.344612 CCCTTCTTTTTGGTTTATAGGGCTTAT 59.655 37.037 0.00 0.00 35.11 1.73
2250 2444 8.414003 CCTTCTTTTTGGTTTATAGGGCTTATC 58.586 37.037 0.00 0.00 0.00 1.75
2251 2445 9.190317 CTTCTTTTTGGTTTATAGGGCTTATCT 57.810 33.333 0.00 0.00 0.00 1.98
2252 2446 8.747538 TCTTTTTGGTTTATAGGGCTTATCTC 57.252 34.615 0.00 0.00 0.00 2.75
2253 2447 8.333235 TCTTTTTGGTTTATAGGGCTTATCTCA 58.667 33.333 0.00 0.00 0.00 3.27
2254 2448 8.887264 TTTTTGGTTTATAGGGCTTATCTCAA 57.113 30.769 0.00 0.00 0.00 3.02
2255 2449 8.519799 TTTTGGTTTATAGGGCTTATCTCAAG 57.480 34.615 0.00 0.00 0.00 3.02
2256 2450 5.621193 TGGTTTATAGGGCTTATCTCAAGC 58.379 41.667 0.31 0.31 42.30 4.01
2257 2451 5.369699 TGGTTTATAGGGCTTATCTCAAGCT 59.630 40.000 8.72 0.00 42.62 3.74
2258 2452 5.935206 GGTTTATAGGGCTTATCTCAAGCTC 59.065 44.000 8.72 4.90 43.92 4.09
2259 2453 6.464465 GGTTTATAGGGCTTATCTCAAGCTCA 60.464 42.308 11.19 0.00 45.93 4.26
2260 2454 6.747414 TTATAGGGCTTATCTCAAGCTCAA 57.253 37.500 11.19 0.00 45.93 3.02
2261 2455 5.839517 ATAGGGCTTATCTCAAGCTCAAT 57.160 39.130 11.19 0.00 45.93 2.57
2262 2456 4.516652 AGGGCTTATCTCAAGCTCAATT 57.483 40.909 11.19 0.00 45.93 2.32
2263 2457 4.864726 AGGGCTTATCTCAAGCTCAATTT 58.135 39.130 11.19 0.00 45.93 1.82
2264 2458 4.643784 AGGGCTTATCTCAAGCTCAATTTG 59.356 41.667 11.19 0.00 45.93 2.32
2265 2459 4.202090 GGGCTTATCTCAAGCTCAATTTGG 60.202 45.833 8.72 0.00 43.10 3.28
2266 2460 4.400567 GGCTTATCTCAAGCTCAATTTGGT 59.599 41.667 8.72 0.00 42.62 3.67
2267 2461 5.105595 GGCTTATCTCAAGCTCAATTTGGTT 60.106 40.000 8.72 0.00 42.62 3.67
2268 2462 5.803967 GCTTATCTCAAGCTCAATTTGGTTG 59.196 40.000 11.68 11.68 42.25 3.77
2269 2463 6.571150 GCTTATCTCAAGCTCAATTTGGTTGT 60.571 38.462 15.38 4.54 41.78 3.32
2270 2464 5.796424 ATCTCAAGCTCAATTTGGTTGTT 57.204 34.783 15.38 4.70 41.78 2.83
2271 2465 5.186996 TCTCAAGCTCAATTTGGTTGTTC 57.813 39.130 15.38 0.00 41.78 3.18
2272 2466 4.644234 TCTCAAGCTCAATTTGGTTGTTCA 59.356 37.500 15.38 2.07 41.78 3.18
2273 2467 5.302568 TCTCAAGCTCAATTTGGTTGTTCAT 59.697 36.000 15.38 0.00 41.78 2.57
2274 2468 5.531634 TCAAGCTCAATTTGGTTGTTCATC 58.468 37.500 15.38 0.00 41.78 2.92
2275 2469 5.068855 TCAAGCTCAATTTGGTTGTTCATCA 59.931 36.000 15.38 0.00 41.78 3.07
2276 2470 5.733620 AGCTCAATTTGGTTGTTCATCAT 57.266 34.783 0.00 0.00 38.95 2.45
2277 2471 5.717119 AGCTCAATTTGGTTGTTCATCATC 58.283 37.500 0.00 0.00 38.95 2.92
2278 2472 5.244402 AGCTCAATTTGGTTGTTCATCATCA 59.756 36.000 0.00 0.00 38.95 3.07
2279 2473 5.346822 GCTCAATTTGGTTGTTCATCATCAC 59.653 40.000 0.00 0.00 38.95 3.06
2280 2474 6.402456 TCAATTTGGTTGTTCATCATCACA 57.598 33.333 0.00 0.00 38.95 3.58
2281 2475 6.995364 TCAATTTGGTTGTTCATCATCACAT 58.005 32.000 0.00 0.00 38.95 3.21
2282 2476 8.120140 TCAATTTGGTTGTTCATCATCACATA 57.880 30.769 0.00 0.00 38.95 2.29
2283 2477 8.751242 TCAATTTGGTTGTTCATCATCACATAT 58.249 29.630 0.00 0.00 38.95 1.78
2284 2478 9.373603 CAATTTGGTTGTTCATCATCACATATT 57.626 29.630 0.00 0.00 33.01 1.28
2285 2479 9.590451 AATTTGGTTGTTCATCATCACATATTC 57.410 29.630 0.00 0.00 0.00 1.75
2286 2480 7.700022 TTGGTTGTTCATCATCACATATTCA 57.300 32.000 0.00 0.00 0.00 2.57
2287 2481 7.324354 TGGTTGTTCATCATCACATATTCAG 57.676 36.000 0.00 0.00 0.00 3.02
2288 2482 7.111466 TGGTTGTTCATCATCACATATTCAGA 58.889 34.615 0.00 0.00 0.00 3.27
2289 2483 7.066163 TGGTTGTTCATCATCACATATTCAGAC 59.934 37.037 0.00 0.00 0.00 3.51
2290 2484 7.281774 GGTTGTTCATCATCACATATTCAGACT 59.718 37.037 0.00 0.00 0.00 3.24
2291 2485 8.671921 GTTGTTCATCATCACATATTCAGACTT 58.328 33.333 0.00 0.00 0.00 3.01
2292 2486 8.429493 TGTTCATCATCACATATTCAGACTTC 57.571 34.615 0.00 0.00 0.00 3.01
2293 2487 8.042515 TGTTCATCATCACATATTCAGACTTCA 58.957 33.333 0.00 0.00 0.00 3.02
2294 2488 8.886719 GTTCATCATCACATATTCAGACTTCAA 58.113 33.333 0.00 0.00 0.00 2.69
2295 2489 9.452287 TTCATCATCACATATTCAGACTTCAAA 57.548 29.630 0.00 0.00 0.00 2.69
2296 2490 9.106070 TCATCATCACATATTCAGACTTCAAAG 57.894 33.333 0.00 0.00 0.00 2.77
2297 2491 8.890718 CATCATCACATATTCAGACTTCAAAGT 58.109 33.333 0.00 0.00 43.16 2.66
2298 2492 8.260270 TCATCACATATTCAGACTTCAAAGTG 57.740 34.615 0.00 0.00 39.88 3.16
2299 2493 6.486253 TCACATATTCAGACTTCAAAGTGC 57.514 37.500 0.00 0.00 39.88 4.40
2300 2494 5.997129 TCACATATTCAGACTTCAAAGTGCA 59.003 36.000 0.00 0.00 39.88 4.57
2301 2495 6.656270 TCACATATTCAGACTTCAAAGTGCAT 59.344 34.615 0.00 0.00 39.88 3.96
2302 2496 7.175467 TCACATATTCAGACTTCAAAGTGCATT 59.825 33.333 0.00 0.00 39.88 3.56
2303 2497 8.453320 CACATATTCAGACTTCAAAGTGCATTA 58.547 33.333 0.00 0.00 39.88 1.90
2304 2498 9.013229 ACATATTCAGACTTCAAAGTGCATTAA 57.987 29.630 0.00 0.00 39.88 1.40
2305 2499 9.844790 CATATTCAGACTTCAAAGTGCATTAAA 57.155 29.630 0.00 0.00 39.88 1.52
2307 2501 8.976986 ATTCAGACTTCAAAGTGCATTAAATC 57.023 30.769 0.00 0.00 39.88 2.17
2308 2502 7.509141 TCAGACTTCAAAGTGCATTAAATCA 57.491 32.000 0.00 0.00 39.88 2.57
2309 2503 8.114331 TCAGACTTCAAAGTGCATTAAATCAT 57.886 30.769 0.00 0.00 39.88 2.45
2310 2504 8.579006 TCAGACTTCAAAGTGCATTAAATCATT 58.421 29.630 0.00 0.00 39.88 2.57
2311 2505 8.644619 CAGACTTCAAAGTGCATTAAATCATTG 58.355 33.333 0.00 0.00 39.88 2.82
2312 2506 7.330208 AGACTTCAAAGTGCATTAAATCATTGC 59.670 33.333 0.00 0.00 39.88 3.56
2313 2507 6.930164 ACTTCAAAGTGCATTAAATCATTGCA 59.070 30.769 0.00 0.00 43.63 4.08
2314 2508 7.604927 ACTTCAAAGTGCATTAAATCATTGCAT 59.395 29.630 4.14 0.00 46.90 3.96
2315 2509 7.297229 TCAAAGTGCATTAAATCATTGCATG 57.703 32.000 4.14 0.11 46.90 4.06
2316 2510 5.728351 AAGTGCATTAAATCATTGCATGC 57.272 34.783 11.82 11.82 46.90 4.06
2317 2511 4.760878 AGTGCATTAAATCATTGCATGCA 58.239 34.783 18.46 18.46 46.90 3.96
2318 2512 5.179533 AGTGCATTAAATCATTGCATGCAA 58.820 33.333 33.57 33.57 46.90 4.08
2319 2513 5.293324 AGTGCATTAAATCATTGCATGCAAG 59.707 36.000 34.15 25.40 46.90 4.01
2320 2514 5.064198 GTGCATTAAATCATTGCATGCAAGT 59.936 36.000 34.15 21.32 46.90 3.16
2321 2515 6.256104 GTGCATTAAATCATTGCATGCAAGTA 59.744 34.615 34.15 25.25 46.90 2.24
2322 2516 6.987404 TGCATTAAATCATTGCATGCAAGTAT 59.013 30.769 34.15 26.18 40.64 2.12
2323 2517 7.042389 TGCATTAAATCATTGCATGCAAGTATG 60.042 33.333 34.15 27.35 40.64 2.39
2324 2518 7.170151 GCATTAAATCATTGCATGCAAGTATGA 59.830 33.333 34.15 30.88 39.47 2.15
2325 2519 9.036671 CATTAAATCATTGCATGCAAGTATGAA 57.963 29.630 34.15 24.39 39.47 2.57
2326 2520 8.637281 TTAAATCATTGCATGCAAGTATGAAG 57.363 30.769 34.15 18.46 39.47 3.02
2327 2521 6.459670 AATCATTGCATGCAAGTATGAAGA 57.540 33.333 34.15 22.13 39.47 2.87
2328 2522 5.494632 TCATTGCATGCAAGTATGAAGAG 57.505 39.130 34.15 16.39 39.47 2.85
2329 2523 5.187687 TCATTGCATGCAAGTATGAAGAGA 58.812 37.500 34.15 18.04 39.47 3.10
2330 2524 5.648960 TCATTGCATGCAAGTATGAAGAGAA 59.351 36.000 34.15 10.64 39.47 2.87
2331 2525 5.963176 TTGCATGCAAGTATGAAGAGAAA 57.037 34.783 28.80 1.53 0.00 2.52
2332 2526 5.963176 TGCATGCAAGTATGAAGAGAAAA 57.037 34.783 20.30 0.00 0.00 2.29
2333 2527 5.702865 TGCATGCAAGTATGAAGAGAAAAC 58.297 37.500 20.30 0.00 0.00 2.43
2334 2528 5.474532 TGCATGCAAGTATGAAGAGAAAACT 59.525 36.000 20.30 0.00 0.00 2.66
2335 2529 6.654582 TGCATGCAAGTATGAAGAGAAAACTA 59.345 34.615 20.30 0.00 0.00 2.24
2336 2530 7.174772 TGCATGCAAGTATGAAGAGAAAACTAA 59.825 33.333 20.30 0.00 0.00 2.24
2337 2531 8.186821 GCATGCAAGTATGAAGAGAAAACTAAT 58.813 33.333 14.21 0.00 0.00 1.73
2338 2532 9.713740 CATGCAAGTATGAAGAGAAAACTAATC 57.286 33.333 0.00 0.00 0.00 1.75
2339 2533 8.846943 TGCAAGTATGAAGAGAAAACTAATCA 57.153 30.769 0.00 0.00 0.00 2.57
2340 2534 9.283768 TGCAAGTATGAAGAGAAAACTAATCAA 57.716 29.630 0.00 0.00 0.00 2.57
2344 2538 9.453572 AGTATGAAGAGAAAACTAATCAATGCA 57.546 29.630 0.00 0.00 0.00 3.96
2347 2541 7.031372 TGAAGAGAAAACTAATCAATGCATGC 58.969 34.615 11.82 11.82 0.00 4.06
2348 2542 6.519679 AGAGAAAACTAATCAATGCATGCA 57.480 33.333 25.04 25.04 0.00 3.96
2349 2543 6.327934 AGAGAAAACTAATCAATGCATGCAC 58.672 36.000 25.37 5.17 0.00 4.57
2350 2544 6.152323 AGAGAAAACTAATCAATGCATGCACT 59.848 34.615 25.37 10.02 0.00 4.40
2351 2545 6.097356 AGAAAACTAATCAATGCATGCACTG 58.903 36.000 25.37 23.90 0.00 3.66
2364 2558 3.761995 CACTGCGTGCATGCATTG 58.238 55.556 32.45 30.81 45.26 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.290948 TGTGGCTGTAAAACCAACTCT 57.709 42.857 0.00 0.00 37.79 3.24
57 214 4.507710 TCTGGTGCTTCAATCATGTAGAC 58.492 43.478 0.00 0.00 0.00 2.59
80 237 5.600908 ACCGTACAATGATTGTGTTACAC 57.399 39.130 20.29 8.76 45.03 2.90
85 242 7.877003 TGAAAATTACCGTACAATGATTGTGT 58.123 30.769 20.29 12.17 45.03 3.72
86 243 8.909708 ATGAAAATTACCGTACAATGATTGTG 57.090 30.769 20.29 6.81 45.03 3.33
121 278 8.954950 ATATGTGCATAGCTTAGATATCCAAC 57.045 34.615 0.00 0.00 0.00 3.77
195 352 4.987912 TGAATTTTCCAAGATCCAAAACGC 59.012 37.500 0.00 0.00 0.00 4.84
228 400 9.662947 ACCTTATATCCTTGTTTACTTGTACAC 57.337 33.333 0.00 0.00 0.00 2.90
248 420 6.651643 TGAAAGTTTACACGCATACACCTTAT 59.348 34.615 0.00 0.00 0.00 1.73
250 422 4.817464 TGAAAGTTTACACGCATACACCTT 59.183 37.500 0.00 0.00 0.00 3.50
268 440 9.079833 CCACTGCATTGTATTTTATTCTGAAAG 57.920 33.333 3.14 0.00 0.00 2.62
289 461 1.588674 TTTTGTACAGGTCGCCACTG 58.411 50.000 0.00 0.00 41.64 3.66
321 494 8.296000 CACGTGATACTATTCATTCTCTCAGAT 58.704 37.037 10.90 0.00 0.00 2.90
322 495 7.283354 ACACGTGATACTATTCATTCTCTCAGA 59.717 37.037 25.01 0.00 0.00 3.27
330 503 9.769093 GCTTTTTAACACGTGATACTATTCATT 57.231 29.630 25.01 4.16 0.00 2.57
509 682 2.586245 CCGAGCTTCATGGAGGCA 59.414 61.111 2.40 0.00 37.11 4.75
530 703 8.266392 ACATTTGAAACTGAAATTGCTTTTGA 57.734 26.923 0.00 0.00 0.00 2.69
565 738 3.730715 CGTCAAACCATCAGAAAAAGCAC 59.269 43.478 0.00 0.00 0.00 4.40
567 740 3.308530 CCGTCAAACCATCAGAAAAAGC 58.691 45.455 0.00 0.00 0.00 3.51
582 755 2.276201 GTATAGTGCACATGCCGTCAA 58.724 47.619 21.04 0.00 41.18 3.18
637 810 6.335777 TGCCGTTATCTGATGATAGATGATG 58.664 40.000 0.00 0.00 37.91 3.07
647 820 1.070376 CGCACATGCCGTTATCTGATG 60.070 52.381 0.00 0.00 37.91 3.07
664 843 2.162319 TGTGAATTGACACTAGCGCA 57.838 45.000 11.47 0.00 40.87 6.09
667 846 4.515191 TCCAGTTTGTGAATTGACACTAGC 59.485 41.667 0.00 0.00 40.87 3.42
702 882 2.023673 CCTCAGCACCAGTTTGTGAAA 58.976 47.619 0.00 0.00 38.55 2.69
743 923 6.036083 ACGTAATTGCACATCAGACTATGTTC 59.964 38.462 0.00 0.00 38.01 3.18
790 973 4.509616 TCTGGAACTTTCTCAACAAACGA 58.490 39.130 0.00 0.00 0.00 3.85
1056 1248 2.603110 TCAGATAGAATGTTTGCGTCGC 59.397 45.455 11.10 11.10 0.00 5.19
1061 1253 4.394300 AGTGCTGTCAGATAGAATGTTTGC 59.606 41.667 3.32 0.00 0.00 3.68
1065 1258 4.403752 TGCTAGTGCTGTCAGATAGAATGT 59.596 41.667 3.32 0.00 40.48 2.71
1103 1296 0.996727 GCACGAACGCCATTGTTGTC 60.997 55.000 0.00 0.00 30.75 3.18
1235 1428 0.887387 GGAAAAGGTACACGGCAGCA 60.887 55.000 0.00 0.00 0.00 4.41
1238 1431 1.962306 GCGGAAAAGGTACACGGCA 60.962 57.895 0.00 0.00 0.00 5.69
1352 1545 1.272490 TGACAGATCACCACCGAAGAC 59.728 52.381 0.00 0.00 0.00 3.01
1429 1622 0.661020 AACAAACGCTGAAAGTCGGG 59.339 50.000 0.00 0.00 37.69 5.14
1436 1629 5.749620 TCGCTTTATTAAACAAACGCTGAA 58.250 33.333 0.00 0.00 0.00 3.02
1444 1637 8.596380 CAACAAAAACCTCGCTTTATTAAACAA 58.404 29.630 0.00 0.00 0.00 2.83
1526 1719 6.713903 GGTAACCAAAAAGGCTACTCTACTTT 59.286 38.462 0.00 0.00 43.14 2.66
1548 1741 1.563924 ATTACACAGCACTCGGGGTA 58.436 50.000 0.00 0.00 0.00 3.69
1640 1833 8.687824 AAACATTACATAAGGAGCATTTTTCG 57.312 30.769 0.00 0.00 0.00 3.46
1737 1930 6.083098 TCATGGGTGACAAAGTTTGTAATG 57.917 37.500 20.90 17.22 45.52 1.90
1751 1944 5.351948 TCATTCTATTTCGTCATGGGTGA 57.648 39.130 0.00 0.00 0.00 4.02
1755 1948 9.624697 TTTCTTTTTCATTCTATTTCGTCATGG 57.375 29.630 0.00 0.00 0.00 3.66
1812 2005 1.422977 TTAGAGGCCACCAGGTTGCA 61.423 55.000 17.27 0.00 37.19 4.08
1813 2006 0.251165 TTTAGAGGCCACCAGGTTGC 60.251 55.000 5.01 7.15 37.19 4.17
1815 2008 3.165071 CAAATTTAGAGGCCACCAGGTT 58.835 45.455 5.01 0.00 37.19 3.50
1816 2009 2.807676 CAAATTTAGAGGCCACCAGGT 58.192 47.619 5.01 0.00 37.19 4.00
1817 2010 1.478105 GCAAATTTAGAGGCCACCAGG 59.522 52.381 5.01 0.00 38.23 4.45
1818 2011 1.478105 GGCAAATTTAGAGGCCACCAG 59.522 52.381 5.01 0.00 45.70 4.00
1819 2012 1.555967 GGCAAATTTAGAGGCCACCA 58.444 50.000 5.01 0.00 45.70 4.17
1827 2020 6.189859 AGATCAACATGAGGGCAAATTTAGA 58.810 36.000 0.00 0.00 0.00 2.10
1829 2022 6.855763 AAGATCAACATGAGGGCAAATTTA 57.144 33.333 0.00 0.00 0.00 1.40
1862 2055 6.003326 TGTCTCAAAGATGCTGGTGAATTTA 58.997 36.000 0.00 0.00 0.00 1.40
1870 2063 4.701651 TGGTAAATGTCTCAAAGATGCTGG 59.298 41.667 0.00 0.00 0.00 4.85
1885 2078 5.379732 TTTAAAGAAGGCGGTGGTAAATG 57.620 39.130 0.00 0.00 0.00 2.32
1892 2085 4.497473 TGTTGATTTAAAGAAGGCGGTG 57.503 40.909 0.00 0.00 0.00 4.94
1895 2088 4.217550 TCCCTTGTTGATTTAAAGAAGGCG 59.782 41.667 7.21 2.56 45.06 5.52
1896 2089 5.336770 CCTCCCTTGTTGATTTAAAGAAGGC 60.337 44.000 7.21 0.00 45.06 4.35
1900 2093 5.074515 AGGTCCTCCCTTGTTGATTTAAAGA 59.925 40.000 0.00 0.00 42.73 2.52
1923 2116 5.982356 TCTTGGAAGAGATTGTATGGACAG 58.018 41.667 0.00 0.00 36.76 3.51
1927 2120 6.409704 TCTGTTCTTGGAAGAGATTGTATGG 58.590 40.000 3.53 0.00 36.22 2.74
1936 2129 2.697654 CTGCCTCTGTTCTTGGAAGAG 58.302 52.381 0.00 0.00 36.22 2.85
1946 2139 0.892814 GCTCCTTTGCTGCCTCTGTT 60.893 55.000 0.00 0.00 0.00 3.16
1950 2143 1.435408 GATCGCTCCTTTGCTGCCTC 61.435 60.000 0.00 0.00 0.00 4.70
1954 2147 1.446907 AACTGATCGCTCCTTTGCTG 58.553 50.000 0.00 0.00 0.00 4.41
1955 2148 2.079925 GAAACTGATCGCTCCTTTGCT 58.920 47.619 0.00 0.00 0.00 3.91
1956 2149 1.131315 GGAAACTGATCGCTCCTTTGC 59.869 52.381 0.00 0.00 0.00 3.68
1960 2153 0.827368 GGAGGAAACTGATCGCTCCT 59.173 55.000 4.81 4.81 44.43 3.69
1966 2159 5.163478 CCCATCATTTTGGAGGAAACTGATC 60.163 44.000 0.00 0.00 40.28 2.92
1971 2164 2.566724 TGCCCATCATTTTGGAGGAAAC 59.433 45.455 0.00 0.00 39.25 2.78
1975 2168 2.101917 GACATGCCCATCATTTTGGAGG 59.898 50.000 0.00 0.00 39.25 4.30
1976 2169 3.028850 AGACATGCCCATCATTTTGGAG 58.971 45.455 0.00 0.00 39.25 3.86
1977 2170 3.104519 AGACATGCCCATCATTTTGGA 57.895 42.857 0.00 0.00 39.25 3.53
1978 2171 3.956199 ACTAGACATGCCCATCATTTTGG 59.044 43.478 0.00 0.00 36.46 3.28
1979 2172 4.400251 ACACTAGACATGCCCATCATTTTG 59.600 41.667 0.00 0.00 31.79 2.44
1985 2178 2.991250 ACAACACTAGACATGCCCATC 58.009 47.619 0.00 0.00 0.00 3.51
1987 2180 2.903784 AGTACAACACTAGACATGCCCA 59.096 45.455 0.00 0.00 34.98 5.36
1988 2181 3.611766 AGTACAACACTAGACATGCCC 57.388 47.619 0.00 0.00 34.98 5.36
1990 2183 9.961265 TGTATATTAGTACAACACTAGACATGC 57.039 33.333 0.00 0.00 40.83 4.06
1993 2186 8.627403 GCCTGTATATTAGTACAACACTAGACA 58.373 37.037 0.00 0.00 40.83 3.41
2003 2196 6.724351 TCCTATCGGCCTGTATATTAGTACA 58.276 40.000 0.00 0.00 33.75 2.90
2004 2197 7.479150 GTTCCTATCGGCCTGTATATTAGTAC 58.521 42.308 0.00 0.00 0.00 2.73
2006 2199 5.125097 CGTTCCTATCGGCCTGTATATTAGT 59.875 44.000 0.00 0.00 0.00 2.24
2007 2200 5.579718 CGTTCCTATCGGCCTGTATATTAG 58.420 45.833 0.00 0.00 0.00 1.73
2008 2201 4.142315 GCGTTCCTATCGGCCTGTATATTA 60.142 45.833 0.00 0.00 0.00 0.98
2021 2214 3.429207 GCGGAATTTAGAGCGTTCCTATC 59.571 47.826 0.00 0.00 39.36 2.08
2022 2215 3.069729 AGCGGAATTTAGAGCGTTCCTAT 59.930 43.478 0.00 0.00 39.36 2.57
2023 2216 2.429610 AGCGGAATTTAGAGCGTTCCTA 59.570 45.455 0.00 0.00 39.36 2.94
2027 2221 2.007608 GGAAGCGGAATTTAGAGCGTT 58.992 47.619 0.00 0.00 34.34 4.84
2037 2231 1.381928 TAGCGTCGAGGAAGCGGAAT 61.382 55.000 9.75 0.00 41.56 3.01
2040 2234 0.110147 CTATAGCGTCGAGGAAGCGG 60.110 60.000 9.75 0.00 41.56 5.52
2049 2243 6.140786 TGTATTAGAGTTTGCTATAGCGTCG 58.859 40.000 19.55 0.00 45.83 5.12
2050 2244 7.925703 TTGTATTAGAGTTTGCTATAGCGTC 57.074 36.000 19.55 12.87 45.83 5.19
2051 2245 8.361139 AGATTGTATTAGAGTTTGCTATAGCGT 58.639 33.333 19.55 4.43 45.83 5.07
2052 2246 8.749841 AGATTGTATTAGAGTTTGCTATAGCG 57.250 34.615 19.55 0.00 45.83 4.26
2053 2247 9.698309 TGAGATTGTATTAGAGTTTGCTATAGC 57.302 33.333 18.18 18.18 42.50 2.97
2058 2252 9.160496 CTTTCTGAGATTGTATTAGAGTTTGCT 57.840 33.333 0.00 0.00 0.00 3.91
2059 2253 9.155975 TCTTTCTGAGATTGTATTAGAGTTTGC 57.844 33.333 0.00 0.00 0.00 3.68
2075 2269 9.573166 TGGACAAATTATTCTTTCTTTCTGAGA 57.427 29.630 0.00 0.00 0.00 3.27
2076 2270 9.617975 GTGGACAAATTATTCTTTCTTTCTGAG 57.382 33.333 0.00 0.00 0.00 3.35
2077 2271 9.130661 TGTGGACAAATTATTCTTTCTTTCTGA 57.869 29.630 0.00 0.00 0.00 3.27
2078 2272 9.748708 TTGTGGACAAATTATTCTTTCTTTCTG 57.251 29.630 0.00 0.00 32.11 3.02
2081 2275 9.492973 CCATTGTGGACAAATTATTCTTTCTTT 57.507 29.630 0.00 0.00 40.96 2.52
2082 2276 8.650490 ACCATTGTGGACAAATTATTCTTTCTT 58.350 29.630 2.45 0.00 40.96 2.52
2083 2277 8.193953 ACCATTGTGGACAAATTATTCTTTCT 57.806 30.769 2.45 0.00 40.96 2.52
2084 2278 8.831715 AACCATTGTGGACAAATTATTCTTTC 57.168 30.769 2.45 0.00 40.96 2.62
2085 2279 9.271828 GAAACCATTGTGGACAAATTATTCTTT 57.728 29.630 2.45 0.00 40.96 2.52
2086 2280 8.650490 AGAAACCATTGTGGACAAATTATTCTT 58.350 29.630 2.45 0.00 40.96 2.52
2087 2281 8.193953 AGAAACCATTGTGGACAAATTATTCT 57.806 30.769 2.45 3.07 40.96 2.40
2088 2282 8.831715 AAGAAACCATTGTGGACAAATTATTC 57.168 30.769 2.45 1.04 40.96 1.75
2089 2283 9.705290 GTAAGAAACCATTGTGGACAAATTATT 57.295 29.630 2.45 0.00 40.96 1.40
2090 2284 8.865090 TGTAAGAAACCATTGTGGACAAATTAT 58.135 29.630 2.45 0.00 40.96 1.28
2091 2285 8.239038 TGTAAGAAACCATTGTGGACAAATTA 57.761 30.769 2.45 0.00 40.96 1.40
2092 2286 7.118496 TGTAAGAAACCATTGTGGACAAATT 57.882 32.000 2.45 0.00 40.96 1.82
2093 2287 6.723298 TGTAAGAAACCATTGTGGACAAAT 57.277 33.333 2.45 0.00 40.96 2.32
2094 2288 6.531503 TTGTAAGAAACCATTGTGGACAAA 57.468 33.333 2.45 0.00 40.96 2.83
2095 2289 6.153680 AGTTTGTAAGAAACCATTGTGGACAA 59.846 34.615 2.45 0.00 40.96 3.18
2096 2290 5.654650 AGTTTGTAAGAAACCATTGTGGACA 59.345 36.000 2.45 0.00 40.96 4.02
2097 2291 6.039382 AGAGTTTGTAAGAAACCATTGTGGAC 59.961 38.462 2.45 0.00 40.96 4.02
2098 2292 6.126409 AGAGTTTGTAAGAAACCATTGTGGA 58.874 36.000 2.45 0.00 40.96 4.02
2099 2293 6.391227 AGAGTTTGTAAGAAACCATTGTGG 57.609 37.500 0.00 0.00 45.02 4.17
2136 2330 9.492973 CCATTGTGGACAAATTATTCTTTCTTT 57.507 29.630 0.00 0.00 40.96 2.52
2137 2331 8.650490 ACCATTGTGGACAAATTATTCTTTCTT 58.350 29.630 2.45 0.00 40.96 2.52
2138 2332 8.193953 ACCATTGTGGACAAATTATTCTTTCT 57.806 30.769 2.45 0.00 40.96 2.52
2139 2333 8.831715 AACCATTGTGGACAAATTATTCTTTC 57.168 30.769 2.45 0.00 40.96 2.62
2140 2334 9.271828 GAAACCATTGTGGACAAATTATTCTTT 57.728 29.630 2.45 0.00 40.96 2.52
2141 2335 8.650490 AGAAACCATTGTGGACAAATTATTCTT 58.350 29.630 2.45 0.00 40.96 2.52
2142 2336 8.193953 AGAAACCATTGTGGACAAATTATTCT 57.806 30.769 2.45 3.07 40.96 2.40
2143 2337 8.087750 TGAGAAACCATTGTGGACAAATTATTC 58.912 33.333 2.45 1.04 40.96 1.75
2144 2338 7.872483 GTGAGAAACCATTGTGGACAAATTATT 59.128 33.333 2.45 0.00 40.96 1.40
2145 2339 7.015098 TGTGAGAAACCATTGTGGACAAATTAT 59.985 33.333 2.45 0.00 40.96 1.28
2146 2340 6.322456 TGTGAGAAACCATTGTGGACAAATTA 59.678 34.615 2.45 0.00 40.96 1.40
2147 2341 5.128499 TGTGAGAAACCATTGTGGACAAATT 59.872 36.000 2.45 0.00 40.96 1.82
2148 2342 4.648762 TGTGAGAAACCATTGTGGACAAAT 59.351 37.500 2.45 0.00 40.96 2.32
2149 2343 4.019858 TGTGAGAAACCATTGTGGACAAA 58.980 39.130 2.45 0.00 40.96 2.83
2150 2344 3.625853 TGTGAGAAACCATTGTGGACAA 58.374 40.909 2.45 0.00 40.96 3.18
2151 2345 3.289407 TGTGAGAAACCATTGTGGACA 57.711 42.857 2.45 0.00 40.96 4.02
2152 2346 3.964909 GTTGTGAGAAACCATTGTGGAC 58.035 45.455 2.45 0.00 40.96 4.02
2162 2356 1.947456 GAGTGGGTGGTTGTGAGAAAC 59.053 52.381 0.00 0.00 0.00 2.78
2163 2357 1.843851 AGAGTGGGTGGTTGTGAGAAA 59.156 47.619 0.00 0.00 0.00 2.52
2164 2358 1.507140 AGAGTGGGTGGTTGTGAGAA 58.493 50.000 0.00 0.00 0.00 2.87
2165 2359 1.507140 AAGAGTGGGTGGTTGTGAGA 58.493 50.000 0.00 0.00 0.00 3.27
2166 2360 3.244561 ACATAAGAGTGGGTGGTTGTGAG 60.245 47.826 0.00 0.00 0.00 3.51
2167 2361 2.708861 ACATAAGAGTGGGTGGTTGTGA 59.291 45.455 0.00 0.00 0.00 3.58
2168 2362 3.140325 ACATAAGAGTGGGTGGTTGTG 57.860 47.619 0.00 0.00 0.00 3.33
2169 2363 3.137544 TCAACATAAGAGTGGGTGGTTGT 59.862 43.478 0.00 0.00 36.46 3.32
2170 2364 3.750371 TCAACATAAGAGTGGGTGGTTG 58.250 45.455 0.00 0.00 36.42 3.77
2171 2365 4.657814 ATCAACATAAGAGTGGGTGGTT 57.342 40.909 0.00 0.00 0.00 3.67
2172 2366 5.975988 ATATCAACATAAGAGTGGGTGGT 57.024 39.130 0.00 0.00 0.00 4.16
2173 2367 8.924511 ATTAATATCAACATAAGAGTGGGTGG 57.075 34.615 0.00 0.00 0.00 4.61
2200 2394 9.275572 AGGGAGTACAATATTAAAGGTCTACAA 57.724 33.333 0.00 0.00 0.00 2.41
2201 2395 8.849543 AGGGAGTACAATATTAAAGGTCTACA 57.150 34.615 0.00 0.00 0.00 2.74
2202 2396 9.761504 GAAGGGAGTACAATATTAAAGGTCTAC 57.238 37.037 0.00 0.00 0.00 2.59
2203 2397 9.725206 AGAAGGGAGTACAATATTAAAGGTCTA 57.275 33.333 0.00 0.00 0.00 2.59
2204 2398 8.625467 AGAAGGGAGTACAATATTAAAGGTCT 57.375 34.615 0.00 0.00 0.00 3.85
2205 2399 9.682465 AAAGAAGGGAGTACAATATTAAAGGTC 57.318 33.333 0.00 0.00 0.00 3.85
2210 2404 9.816787 ACCAAAAAGAAGGGAGTACAATATTAA 57.183 29.630 0.00 0.00 0.00 1.40
2211 2405 9.816787 AACCAAAAAGAAGGGAGTACAATATTA 57.183 29.630 0.00 0.00 0.00 0.98
2212 2406 8.721133 AACCAAAAAGAAGGGAGTACAATATT 57.279 30.769 0.00 0.00 0.00 1.28
2213 2407 8.721133 AAACCAAAAAGAAGGGAGTACAATAT 57.279 30.769 0.00 0.00 0.00 1.28
2214 2408 9.816787 ATAAACCAAAAAGAAGGGAGTACAATA 57.183 29.630 0.00 0.00 0.00 1.90
2215 2409 8.721133 ATAAACCAAAAAGAAGGGAGTACAAT 57.279 30.769 0.00 0.00 0.00 2.71
2216 2410 9.292195 CTATAAACCAAAAAGAAGGGAGTACAA 57.708 33.333 0.00 0.00 0.00 2.41
2217 2411 7.886446 CCTATAAACCAAAAAGAAGGGAGTACA 59.114 37.037 0.00 0.00 0.00 2.90
2218 2412 7.338703 CCCTATAAACCAAAAAGAAGGGAGTAC 59.661 40.741 0.00 0.00 44.39 2.73
2219 2413 7.407729 CCCTATAAACCAAAAAGAAGGGAGTA 58.592 38.462 0.00 0.00 44.39 2.59
2220 2414 6.253758 CCCTATAAACCAAAAAGAAGGGAGT 58.746 40.000 0.00 0.00 44.39 3.85
2221 2415 5.127194 GCCCTATAAACCAAAAAGAAGGGAG 59.873 44.000 8.25 0.00 44.39 4.30
2222 2416 5.020795 GCCCTATAAACCAAAAAGAAGGGA 58.979 41.667 8.25 0.00 44.39 4.20
2223 2417 5.023452 AGCCCTATAAACCAAAAAGAAGGG 58.977 41.667 0.00 0.00 44.43 3.95
2224 2418 6.605471 AAGCCCTATAAACCAAAAAGAAGG 57.395 37.500 0.00 0.00 0.00 3.46
2225 2419 9.190317 AGATAAGCCCTATAAACCAAAAAGAAG 57.810 33.333 0.00 0.00 0.00 2.85
2226 2420 9.185680 GAGATAAGCCCTATAAACCAAAAAGAA 57.814 33.333 0.00 0.00 0.00 2.52
2227 2421 8.333235 TGAGATAAGCCCTATAAACCAAAAAGA 58.667 33.333 0.00 0.00 0.00 2.52
2228 2422 8.519799 TGAGATAAGCCCTATAAACCAAAAAG 57.480 34.615 0.00 0.00 0.00 2.27
2229 2423 8.887264 TTGAGATAAGCCCTATAAACCAAAAA 57.113 30.769 0.00 0.00 0.00 1.94
2230 2424 7.068226 GCTTGAGATAAGCCCTATAAACCAAAA 59.932 37.037 0.30 0.00 37.30 2.44
2231 2425 6.546034 GCTTGAGATAAGCCCTATAAACCAAA 59.454 38.462 0.30 0.00 37.30 3.28
2232 2426 6.062095 GCTTGAGATAAGCCCTATAAACCAA 58.938 40.000 0.30 0.00 37.30 3.67
2233 2427 5.369699 AGCTTGAGATAAGCCCTATAAACCA 59.630 40.000 7.93 0.00 44.01 3.67
2234 2428 5.870706 AGCTTGAGATAAGCCCTATAAACC 58.129 41.667 7.93 0.00 44.01 3.27
2235 2429 6.525629 TGAGCTTGAGATAAGCCCTATAAAC 58.474 40.000 7.93 0.00 44.01 2.01
2236 2430 6.747414 TGAGCTTGAGATAAGCCCTATAAA 57.253 37.500 7.93 0.00 44.01 1.40
2237 2431 6.747414 TTGAGCTTGAGATAAGCCCTATAA 57.253 37.500 7.93 0.00 44.01 0.98
2238 2432 6.942163 ATTGAGCTTGAGATAAGCCCTATA 57.058 37.500 7.93 0.00 44.01 1.31
2239 2433 5.839517 ATTGAGCTTGAGATAAGCCCTAT 57.160 39.130 7.93 0.00 44.01 2.57
2240 2434 5.636903 AATTGAGCTTGAGATAAGCCCTA 57.363 39.130 7.93 0.00 44.01 3.53
2241 2435 4.516652 AATTGAGCTTGAGATAAGCCCT 57.483 40.909 7.93 0.00 44.01 5.19
2242 2436 4.202090 CCAAATTGAGCTTGAGATAAGCCC 60.202 45.833 7.93 0.00 44.01 5.19
2243 2437 4.400567 ACCAAATTGAGCTTGAGATAAGCC 59.599 41.667 7.93 1.60 44.01 4.35
2244 2438 5.573337 ACCAAATTGAGCTTGAGATAAGC 57.427 39.130 3.57 3.57 43.31 3.09
2245 2439 6.917533 ACAACCAAATTGAGCTTGAGATAAG 58.082 36.000 0.00 0.00 41.23 1.73
2246 2440 6.899393 ACAACCAAATTGAGCTTGAGATAA 57.101 33.333 0.00 0.00 41.23 1.75
2247 2441 6.489700 TGAACAACCAAATTGAGCTTGAGATA 59.510 34.615 0.00 0.00 41.23 1.98
2248 2442 5.302568 TGAACAACCAAATTGAGCTTGAGAT 59.697 36.000 0.00 0.00 41.23 2.75
2249 2443 4.644234 TGAACAACCAAATTGAGCTTGAGA 59.356 37.500 0.00 0.00 41.23 3.27
2250 2444 4.935702 TGAACAACCAAATTGAGCTTGAG 58.064 39.130 0.00 0.00 41.23 3.02
2251 2445 4.998671 TGAACAACCAAATTGAGCTTGA 57.001 36.364 0.00 0.00 41.23 3.02
2252 2446 5.291178 TGATGAACAACCAAATTGAGCTTG 58.709 37.500 0.00 0.00 41.23 4.01
2253 2447 5.534207 TGATGAACAACCAAATTGAGCTT 57.466 34.783 0.00 0.00 41.23 3.74
2254 2448 5.244402 TGATGATGAACAACCAAATTGAGCT 59.756 36.000 0.00 0.00 41.23 4.09
2255 2449 5.346822 GTGATGATGAACAACCAAATTGAGC 59.653 40.000 0.00 0.00 41.23 4.26
2256 2450 6.448852 TGTGATGATGAACAACCAAATTGAG 58.551 36.000 0.00 0.00 41.23 3.02
2257 2451 6.402456 TGTGATGATGAACAACCAAATTGA 57.598 33.333 0.00 0.00 41.23 2.57
2258 2452 8.936070 ATATGTGATGATGAACAACCAAATTG 57.064 30.769 0.00 0.00 44.60 2.32
2259 2453 9.590451 GAATATGTGATGATGAACAACCAAATT 57.410 29.630 0.00 0.00 0.00 1.82
2260 2454 8.751242 TGAATATGTGATGATGAACAACCAAAT 58.249 29.630 0.00 0.00 0.00 2.32
2261 2455 8.120140 TGAATATGTGATGATGAACAACCAAA 57.880 30.769 0.00 0.00 0.00 3.28
2262 2456 7.611079 TCTGAATATGTGATGATGAACAACCAA 59.389 33.333 0.00 0.00 0.00 3.67
2263 2457 7.066163 GTCTGAATATGTGATGATGAACAACCA 59.934 37.037 0.00 0.00 0.00 3.67
2264 2458 7.281774 AGTCTGAATATGTGATGATGAACAACC 59.718 37.037 0.00 0.00 0.00 3.77
2265 2459 8.206325 AGTCTGAATATGTGATGATGAACAAC 57.794 34.615 0.00 0.00 0.00 3.32
2266 2460 8.797350 AAGTCTGAATATGTGATGATGAACAA 57.203 30.769 0.00 0.00 0.00 2.83
2267 2461 8.042515 TGAAGTCTGAATATGTGATGATGAACA 58.957 33.333 0.00 0.00 0.00 3.18
2268 2462 8.429493 TGAAGTCTGAATATGTGATGATGAAC 57.571 34.615 0.00 0.00 0.00 3.18
2269 2463 9.452287 TTTGAAGTCTGAATATGTGATGATGAA 57.548 29.630 0.00 0.00 0.00 2.57
2270 2464 9.106070 CTTTGAAGTCTGAATATGTGATGATGA 57.894 33.333 0.00 0.00 0.00 2.92
2271 2465 8.890718 ACTTTGAAGTCTGAATATGTGATGATG 58.109 33.333 0.00 0.00 32.86 3.07
2272 2466 8.890718 CACTTTGAAGTCTGAATATGTGATGAT 58.109 33.333 0.00 0.00 37.08 2.45
2273 2467 7.148356 GCACTTTGAAGTCTGAATATGTGATGA 60.148 37.037 0.00 0.00 37.08 2.92
2274 2468 6.965500 GCACTTTGAAGTCTGAATATGTGATG 59.035 38.462 0.00 0.00 37.08 3.07
2275 2469 6.656270 TGCACTTTGAAGTCTGAATATGTGAT 59.344 34.615 0.00 0.00 37.08 3.06
2276 2470 5.997129 TGCACTTTGAAGTCTGAATATGTGA 59.003 36.000 0.00 0.00 37.08 3.58
2277 2471 6.245115 TGCACTTTGAAGTCTGAATATGTG 57.755 37.500 0.00 0.00 37.08 3.21
2278 2472 7.458409 AATGCACTTTGAAGTCTGAATATGT 57.542 32.000 0.00 0.00 37.08 2.29
2279 2473 9.844790 TTTAATGCACTTTGAAGTCTGAATATG 57.155 29.630 0.00 0.00 37.08 1.78
2282 2476 8.579006 TGATTTAATGCACTTTGAAGTCTGAAT 58.421 29.630 0.00 0.00 37.08 2.57
2283 2477 7.939782 TGATTTAATGCACTTTGAAGTCTGAA 58.060 30.769 0.00 0.00 37.08 3.02
2284 2478 7.509141 TGATTTAATGCACTTTGAAGTCTGA 57.491 32.000 0.00 0.00 37.08 3.27
2285 2479 8.644619 CAATGATTTAATGCACTTTGAAGTCTG 58.355 33.333 0.00 0.00 37.08 3.51
2286 2480 7.330208 GCAATGATTTAATGCACTTTGAAGTCT 59.670 33.333 0.00 0.00 39.81 3.24
2287 2481 7.116662 TGCAATGATTTAATGCACTTTGAAGTC 59.883 33.333 0.00 0.00 44.52 3.01
2288 2482 6.930164 TGCAATGATTTAATGCACTTTGAAGT 59.070 30.769 0.00 0.00 44.52 3.01
2289 2483 7.354025 TGCAATGATTTAATGCACTTTGAAG 57.646 32.000 0.00 0.00 44.52 3.02
2308 2502 6.519679 TTTCTCTTCATACTTGCATGCAAT 57.480 33.333 31.96 22.79 35.20 3.56
2309 2503 5.963176 TTTCTCTTCATACTTGCATGCAA 57.037 34.783 30.12 30.12 0.00 4.08
2310 2504 5.474532 AGTTTTCTCTTCATACTTGCATGCA 59.525 36.000 18.46 18.46 0.00 3.96
2311 2505 5.947443 AGTTTTCTCTTCATACTTGCATGC 58.053 37.500 11.82 11.82 0.00 4.06
2312 2506 9.713740 GATTAGTTTTCTCTTCATACTTGCATG 57.286 33.333 0.00 0.00 0.00 4.06
2313 2507 9.453572 TGATTAGTTTTCTCTTCATACTTGCAT 57.546 29.630 0.00 0.00 0.00 3.96
2314 2508 8.846943 TGATTAGTTTTCTCTTCATACTTGCA 57.153 30.769 0.00 0.00 0.00 4.08
2318 2512 9.453572 TGCATTGATTAGTTTTCTCTTCATACT 57.546 29.630 0.00 0.00 0.00 2.12
2321 2515 7.705325 GCATGCATTGATTAGTTTTCTCTTCAT 59.295 33.333 14.21 0.00 0.00 2.57
2322 2516 7.031372 GCATGCATTGATTAGTTTTCTCTTCA 58.969 34.615 14.21 0.00 0.00 3.02
2323 2517 7.008992 GTGCATGCATTGATTAGTTTTCTCTTC 59.991 37.037 25.64 0.00 0.00 2.87
2324 2518 6.810182 GTGCATGCATTGATTAGTTTTCTCTT 59.190 34.615 25.64 0.00 0.00 2.85
2325 2519 6.152323 AGTGCATGCATTGATTAGTTTTCTCT 59.848 34.615 25.64 7.08 0.00 3.10
2326 2520 6.252869 CAGTGCATGCATTGATTAGTTTTCTC 59.747 38.462 32.78 11.04 36.00 2.87
2327 2521 6.097356 CAGTGCATGCATTGATTAGTTTTCT 58.903 36.000 32.78 14.15 36.00 2.52
2328 2522 6.327177 CAGTGCATGCATTGATTAGTTTTC 57.673 37.500 32.78 12.10 36.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.