Multiple sequence alignment - TraesCS3A01G231200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G231200 chr3A 100.000 2804 0 0 1 2804 431134225 431137028 0.000000e+00 5179
1 TraesCS3A01G231200 chr2D 95.065 2087 68 12 744 2804 118533120 118535197 0.000000e+00 3251
2 TraesCS3A01G231200 chr2D 90.726 248 21 2 487 733 118532814 118533060 2.080000e-86 329
3 TraesCS3A01G231200 chr2D 77.251 211 43 5 489 696 11559607 11559815 4.910000e-23 119
4 TraesCS3A01G231200 chr4B 96.839 1044 31 2 744 1787 339264276 339263235 0.000000e+00 1744
5 TraesCS3A01G231200 chr4B 93.611 1033 50 5 1788 2804 339263201 339262169 0.000000e+00 1528
6 TraesCS3A01G231200 chr4B 82.029 690 58 31 1995 2619 480059467 480060155 6.880000e-146 527
7 TraesCS3A01G231200 chr4B 91.393 244 18 2 491 733 339264577 339264336 5.790000e-87 331
8 TraesCS3A01G231200 chr1D 96.839 1044 26 4 744 1787 239622466 239621430 0.000000e+00 1738
9 TraesCS3A01G231200 chr1D 93.744 1023 41 10 1788 2804 239621396 239620391 0.000000e+00 1513
10 TraesCS3A01G231200 chr1D 93.046 1021 42 11 1788 2804 212526265 212527260 0.000000e+00 1465
11 TraesCS3A01G231200 chr1D 93.366 407 17 4 1381 1787 212525835 212526231 6.690000e-166 593
12 TraesCS3A01G231200 chr1D 93.952 248 14 1 487 733 239622773 239622526 9.480000e-100 374
13 TraesCS3A01G231200 chr4D 95.977 1044 36 3 744 1787 93450052 93449015 0.000000e+00 1690
14 TraesCS3A01G231200 chr4D 92.933 1033 34 8 1788 2804 93448981 93447972 0.000000e+00 1467
15 TraesCS3A01G231200 chr4D 83.010 671 58 30 2005 2619 390273572 390274242 8.770000e-155 556
16 TraesCS3A01G231200 chr4D 92.549 255 15 3 491 742 93450355 93450102 2.050000e-96 363
17 TraesCS3A01G231200 chr3B 97.128 975 27 1 744 1717 809806296 809807270 0.000000e+00 1644
18 TraesCS3A01G231200 chr3B 93.927 494 17 3 3 490 418070045 418070531 0.000000e+00 734
19 TraesCS3A01G231200 chr3B 97.315 298 8 0 2507 2804 809807372 809807669 8.960000e-140 507
20 TraesCS3A01G231200 chr3B 92.105 228 17 1 507 733 809806009 809806236 1.250000e-83 320
21 TraesCS3A01G231200 chr7B 93.385 1028 44 10 1788 2802 375392266 375393282 0.000000e+00 1500
22 TraesCS3A01G231200 chr5B 88.197 1076 95 9 744 1787 537784698 537783623 0.000000e+00 1254
23 TraesCS3A01G231200 chr5B 82.569 218 21 9 1788 1991 537783589 537783375 2.870000e-40 176
24 TraesCS3A01G231200 chr5A 88.197 1076 95 10 744 1787 558176162 558175087 0.000000e+00 1254
25 TraesCS3A01G231200 chr5A 82.063 223 18 10 1788 1991 558175053 558174834 1.340000e-38 171
26 TraesCS3A01G231200 chr5D 87.918 1076 98 9 744 1787 441405414 441404339 0.000000e+00 1238
27 TraesCS3A01G231200 chr5D 78.049 492 52 21 1995 2449 472427082 472427554 2.770000e-65 259
28 TraesCS3A01G231200 chr3D 95.043 464 14 4 1 462 303357754 303357298 0.000000e+00 721
29 TraesCS3A01G231200 chr4A 82.754 690 54 25 1992 2619 72026453 72027139 3.160000e-154 555


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G231200 chr3A 431134225 431137028 2803 False 5179.000000 5179 100.000000 1 2804 1 chr3A.!!$F1 2803
1 TraesCS3A01G231200 chr2D 118532814 118535197 2383 False 1790.000000 3251 92.895500 487 2804 2 chr2D.!!$F2 2317
2 TraesCS3A01G231200 chr4B 339262169 339264577 2408 True 1201.000000 1744 93.947667 491 2804 3 chr4B.!!$R1 2313
3 TraesCS3A01G231200 chr4B 480059467 480060155 688 False 527.000000 527 82.029000 1995 2619 1 chr4B.!!$F1 624
4 TraesCS3A01G231200 chr1D 239620391 239622773 2382 True 1208.333333 1738 94.845000 487 2804 3 chr1D.!!$R1 2317
5 TraesCS3A01G231200 chr1D 212525835 212527260 1425 False 1029.000000 1465 93.206000 1381 2804 2 chr1D.!!$F1 1423
6 TraesCS3A01G231200 chr4D 93447972 93450355 2383 True 1173.333333 1690 93.819667 491 2804 3 chr4D.!!$R1 2313
7 TraesCS3A01G231200 chr4D 390273572 390274242 670 False 556.000000 556 83.010000 2005 2619 1 chr4D.!!$F1 614
8 TraesCS3A01G231200 chr3B 809806009 809807669 1660 False 823.666667 1644 95.516000 507 2804 3 chr3B.!!$F2 2297
9 TraesCS3A01G231200 chr7B 375392266 375393282 1016 False 1500.000000 1500 93.385000 1788 2802 1 chr7B.!!$F1 1014
10 TraesCS3A01G231200 chr5B 537783375 537784698 1323 True 715.000000 1254 85.383000 744 1991 2 chr5B.!!$R1 1247
11 TraesCS3A01G231200 chr5A 558174834 558176162 1328 True 712.500000 1254 85.130000 744 1991 2 chr5A.!!$R1 1247
12 TraesCS3A01G231200 chr5D 441404339 441405414 1075 True 1238.000000 1238 87.918000 744 1787 1 chr5D.!!$R1 1043
13 TraesCS3A01G231200 chr4A 72026453 72027139 686 False 555.000000 555 82.754000 1992 2619 1 chr4A.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 433 0.032912 TGCTCATTGGCCATGGATGT 60.033 50.0 18.4 0.0 33.07 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 2220 0.323816 TGTCGGACAGCTGATCCTCT 60.324 55.0 23.35 0.0 33.7 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.168326 TGTTGTGATGATGCTCACGT 57.832 45.000 0.06 0.00 46.89 4.49
21 22 1.799994 TGTTGTGATGATGCTCACGTG 59.200 47.619 9.94 9.94 46.89 4.49
22 23 2.068519 GTTGTGATGATGCTCACGTGA 58.931 47.619 18.88 18.88 46.89 4.35
23 24 2.674852 GTTGTGATGATGCTCACGTGAT 59.325 45.455 20.40 3.85 46.89 3.06
24 25 2.273557 TGTGATGATGCTCACGTGATG 58.726 47.619 20.40 14.04 46.89 3.07
25 26 1.004185 GTGATGATGCTCACGTGATGC 60.004 52.381 20.40 22.78 36.50 3.91
26 27 0.585357 GATGATGCTCACGTGATGCC 59.415 55.000 26.34 16.63 0.00 4.40
27 28 0.179702 ATGATGCTCACGTGATGCCT 59.820 50.000 26.34 20.51 0.00 4.75
28 29 0.741927 TGATGCTCACGTGATGCCTG 60.742 55.000 26.34 14.93 0.00 4.85
29 30 2.044832 GATGCTCACGTGATGCCTGC 62.045 60.000 26.34 22.26 0.00 4.85
30 31 3.503363 GCTCACGTGATGCCTGCC 61.503 66.667 20.40 0.00 0.00 4.85
31 32 2.267006 CTCACGTGATGCCTGCCT 59.733 61.111 20.40 0.00 0.00 4.75
32 33 1.812922 CTCACGTGATGCCTGCCTC 60.813 63.158 20.40 0.00 0.00 4.70
33 34 2.821366 CACGTGATGCCTGCCTCC 60.821 66.667 10.90 0.00 0.00 4.30
34 35 3.005539 ACGTGATGCCTGCCTCCT 61.006 61.111 0.00 0.00 0.00 3.69
35 36 1.685765 ACGTGATGCCTGCCTCCTA 60.686 57.895 0.00 0.00 0.00 2.94
36 37 1.227380 CGTGATGCCTGCCTCCTAC 60.227 63.158 0.00 0.00 0.00 3.18
37 38 1.227380 GTGATGCCTGCCTCCTACG 60.227 63.158 0.00 0.00 0.00 3.51
38 39 2.423446 GATGCCTGCCTCCTACGG 59.577 66.667 0.00 0.00 0.00 4.02
39 40 2.365635 ATGCCTGCCTCCTACGGT 60.366 61.111 0.00 0.00 0.00 4.83
40 41 1.972660 GATGCCTGCCTCCTACGGTT 61.973 60.000 0.00 0.00 0.00 4.44
41 42 0.689745 ATGCCTGCCTCCTACGGTTA 60.690 55.000 0.00 0.00 0.00 2.85
42 43 1.143401 GCCTGCCTCCTACGGTTAC 59.857 63.158 0.00 0.00 0.00 2.50
43 44 1.821258 CCTGCCTCCTACGGTTACC 59.179 63.158 0.00 0.00 0.00 2.85
62 63 1.727830 CGTACGAACGGAAGAGATCG 58.272 55.000 10.44 0.00 45.50 3.69
63 64 1.325640 CGTACGAACGGAAGAGATCGA 59.674 52.381 10.44 0.00 45.50 3.59
64 65 2.033065 CGTACGAACGGAAGAGATCGAT 60.033 50.000 10.44 0.00 45.50 3.59
65 66 2.759538 ACGAACGGAAGAGATCGATC 57.240 50.000 17.91 17.91 38.11 3.69
66 67 2.290464 ACGAACGGAAGAGATCGATCT 58.710 47.619 27.63 27.63 40.50 2.75
76 77 1.790755 AGATCGATCTCTCGTCTCCG 58.209 55.000 22.32 0.00 45.25 4.63
77 78 0.793861 GATCGATCTCTCGTCTCCGG 59.206 60.000 18.29 0.00 45.25 5.14
78 79 0.107081 ATCGATCTCTCGTCTCCGGT 59.893 55.000 0.00 0.00 45.25 5.28
79 80 0.749049 TCGATCTCTCGTCTCCGGTA 59.251 55.000 0.00 0.00 45.25 4.02
80 81 1.343789 TCGATCTCTCGTCTCCGGTAT 59.656 52.381 0.00 0.00 45.25 2.73
81 82 2.560105 TCGATCTCTCGTCTCCGGTATA 59.440 50.000 0.00 0.00 45.25 1.47
82 83 2.667481 CGATCTCTCGTCTCCGGTATAC 59.333 54.545 0.00 0.00 40.07 1.47
83 84 3.661944 GATCTCTCGTCTCCGGTATACA 58.338 50.000 0.00 0.00 33.95 2.29
84 85 2.831333 TCTCTCGTCTCCGGTATACAC 58.169 52.381 0.00 0.00 33.95 2.90
85 86 2.169144 TCTCTCGTCTCCGGTATACACA 59.831 50.000 0.00 0.00 33.95 3.72
86 87 2.283298 TCTCGTCTCCGGTATACACAC 58.717 52.381 0.00 0.00 33.95 3.82
87 88 2.011947 CTCGTCTCCGGTATACACACA 58.988 52.381 0.00 0.00 33.95 3.72
88 89 1.739466 TCGTCTCCGGTATACACACAC 59.261 52.381 0.00 0.00 33.95 3.82
89 90 1.530441 CGTCTCCGGTATACACACACG 60.530 57.143 0.00 2.61 0.00 4.49
90 91 1.097232 TCTCCGGTATACACACACGG 58.903 55.000 0.00 10.27 45.52 4.94
94 95 1.205657 CGGTATACACACACGGATGC 58.794 55.000 5.01 0.00 0.00 3.91
95 96 1.205657 GGTATACACACACGGATGCG 58.794 55.000 4.58 4.58 0.00 4.73
96 97 1.202325 GGTATACACACACGGATGCGA 60.202 52.381 15.49 0.00 0.00 5.10
97 98 2.117137 GTATACACACACGGATGCGAG 58.883 52.381 15.49 8.35 0.00 5.03
98 99 0.179111 ATACACACACGGATGCGAGG 60.179 55.000 15.49 7.60 0.00 4.63
99 100 2.220615 TACACACACGGATGCGAGGG 62.221 60.000 15.49 9.70 0.00 4.30
100 101 4.082523 ACACACGGATGCGAGGGG 62.083 66.667 15.49 8.78 0.00 4.79
111 112 3.775654 CGAGGGGCGAGGCTCTTT 61.776 66.667 13.50 0.00 44.57 2.52
112 113 2.423898 CGAGGGGCGAGGCTCTTTA 61.424 63.158 13.50 0.00 44.57 1.85
113 114 1.749334 CGAGGGGCGAGGCTCTTTAT 61.749 60.000 13.50 0.00 44.57 1.40
114 115 0.034198 GAGGGGCGAGGCTCTTTATC 59.966 60.000 13.50 0.67 0.00 1.75
115 116 1.301009 GGGGCGAGGCTCTTTATCG 60.301 63.158 13.50 0.00 39.40 2.92
116 117 1.740285 GGGCGAGGCTCTTTATCGA 59.260 57.895 13.50 0.00 38.72 3.59
117 118 0.319125 GGGCGAGGCTCTTTATCGAG 60.319 60.000 13.50 0.00 38.72 4.04
118 119 0.386113 GGCGAGGCTCTTTATCGAGT 59.614 55.000 13.50 0.00 38.72 4.18
119 120 1.482278 GCGAGGCTCTTTATCGAGTG 58.518 55.000 13.50 0.00 38.72 3.51
120 121 1.482278 CGAGGCTCTTTATCGAGTGC 58.518 55.000 13.50 0.00 38.72 4.40
122 123 2.594541 GGCTCTTTATCGAGTGCCG 58.405 57.895 2.67 0.00 43.78 5.69
123 124 0.179108 GGCTCTTTATCGAGTGCCGT 60.179 55.000 2.67 0.00 43.78 5.68
124 125 0.924090 GCTCTTTATCGAGTGCCGTG 59.076 55.000 0.00 0.00 39.75 4.94
125 126 0.924090 CTCTTTATCGAGTGCCGTGC 59.076 55.000 0.00 0.00 39.75 5.34
126 127 0.530744 TCTTTATCGAGTGCCGTGCT 59.469 50.000 0.00 0.00 39.75 4.40
127 128 0.924090 CTTTATCGAGTGCCGTGCTC 59.076 55.000 0.00 0.00 39.75 4.26
128 129 0.459585 TTTATCGAGTGCCGTGCTCC 60.460 55.000 0.00 0.00 39.75 4.70
129 130 1.600511 TTATCGAGTGCCGTGCTCCA 61.601 55.000 0.00 0.00 39.75 3.86
130 131 1.600511 TATCGAGTGCCGTGCTCCAA 61.601 55.000 0.00 0.00 39.75 3.53
131 132 2.842394 ATCGAGTGCCGTGCTCCAAG 62.842 60.000 0.00 0.00 39.75 3.61
132 133 2.343758 GAGTGCCGTGCTCCAAGA 59.656 61.111 0.00 0.00 0.00 3.02
133 134 1.301716 GAGTGCCGTGCTCCAAGAA 60.302 57.895 0.00 0.00 0.00 2.52
134 135 0.884704 GAGTGCCGTGCTCCAAGAAA 60.885 55.000 0.00 0.00 0.00 2.52
135 136 0.465460 AGTGCCGTGCTCCAAGAAAA 60.465 50.000 0.00 0.00 0.00 2.29
136 137 0.383949 GTGCCGTGCTCCAAGAAAAA 59.616 50.000 0.00 0.00 0.00 1.94
137 138 0.667993 TGCCGTGCTCCAAGAAAAAG 59.332 50.000 0.00 0.00 0.00 2.27
138 139 0.039165 GCCGTGCTCCAAGAAAAAGG 60.039 55.000 0.00 0.00 0.00 3.11
139 140 0.039165 CCGTGCTCCAAGAAAAAGGC 60.039 55.000 0.00 0.00 0.00 4.35
140 141 0.039165 CGTGCTCCAAGAAAAAGGCC 60.039 55.000 0.00 0.00 0.00 5.19
141 142 0.039165 GTGCTCCAAGAAAAAGGCCG 60.039 55.000 0.00 0.00 0.00 6.13
142 143 0.179004 TGCTCCAAGAAAAAGGCCGA 60.179 50.000 0.00 0.00 0.00 5.54
143 144 0.958822 GCTCCAAGAAAAAGGCCGAA 59.041 50.000 0.00 0.00 0.00 4.30
144 145 1.339929 GCTCCAAGAAAAAGGCCGAAA 59.660 47.619 0.00 0.00 0.00 3.46
145 146 2.608016 GCTCCAAGAAAAAGGCCGAAAG 60.608 50.000 0.00 0.00 0.00 2.62
146 147 2.884639 CTCCAAGAAAAAGGCCGAAAGA 59.115 45.455 0.00 0.00 0.00 2.52
147 148 2.884639 TCCAAGAAAAAGGCCGAAAGAG 59.115 45.455 0.00 0.00 0.00 2.85
148 149 2.029918 CCAAGAAAAAGGCCGAAAGAGG 60.030 50.000 0.00 0.00 0.00 3.69
149 150 1.911057 AGAAAAAGGCCGAAAGAGGG 58.089 50.000 0.00 0.00 0.00 4.30
156 157 4.697756 CCGAAAGAGGGCGCACCA 62.698 66.667 5.73 0.00 43.89 4.17
157 158 3.423154 CGAAAGAGGGCGCACCAC 61.423 66.667 5.73 5.00 43.89 4.16
158 159 2.281484 GAAAGAGGGCGCACCACA 60.281 61.111 5.73 0.00 43.89 4.17
159 160 1.675641 GAAAGAGGGCGCACCACAT 60.676 57.895 5.73 0.00 43.89 3.21
160 161 1.228552 AAAGAGGGCGCACCACATT 60.229 52.632 5.73 1.26 43.89 2.71
161 162 1.526575 AAAGAGGGCGCACCACATTG 61.527 55.000 5.73 0.00 43.89 2.82
162 163 3.443045 GAGGGCGCACCACATTGG 61.443 66.667 5.73 0.00 45.02 3.16
166 167 3.762247 GCGCACCACATTGGCCAT 61.762 61.111 6.09 0.00 42.67 4.40
167 168 2.491152 CGCACCACATTGGCCATC 59.509 61.111 6.09 0.00 42.67 3.51
168 169 2.341875 CGCACCACATTGGCCATCA 61.342 57.895 6.09 0.00 42.67 3.07
169 170 1.875420 CGCACCACATTGGCCATCAA 61.875 55.000 6.09 0.00 42.67 2.57
170 171 0.538118 GCACCACATTGGCCATCAAT 59.462 50.000 6.09 0.00 46.24 2.57
171 172 1.472026 GCACCACATTGGCCATCAATC 60.472 52.381 6.09 0.00 43.70 2.67
172 173 1.826096 CACCACATTGGCCATCAATCA 59.174 47.619 6.09 0.00 43.70 2.57
173 174 2.432874 CACCACATTGGCCATCAATCAT 59.567 45.455 6.09 0.00 43.70 2.45
174 175 2.432874 ACCACATTGGCCATCAATCATG 59.567 45.455 6.09 9.00 43.70 3.07
175 176 2.479837 CACATTGGCCATCAATCATGC 58.520 47.619 6.09 0.00 43.70 4.06
176 177 1.414919 ACATTGGCCATCAATCATGCC 59.585 47.619 6.09 0.00 43.70 4.40
177 178 1.053424 ATTGGCCATCAATCATGCCC 58.947 50.000 6.09 0.00 41.97 5.36
178 179 1.049855 TTGGCCATCAATCATGCCCC 61.050 55.000 6.09 0.00 31.18 5.80
179 180 2.212110 GGCCATCAATCATGCCCCC 61.212 63.158 0.00 0.00 0.00 5.40
204 205 4.664677 GGCGCGAGTGACACCAGT 62.665 66.667 12.10 0.00 0.00 4.00
205 206 2.257371 GCGCGAGTGACACCAGTA 59.743 61.111 12.10 0.00 0.00 2.74
206 207 1.372499 GCGCGAGTGACACCAGTAA 60.372 57.895 12.10 0.00 0.00 2.24
207 208 0.736325 GCGCGAGTGACACCAGTAAT 60.736 55.000 12.10 0.00 0.00 1.89
208 209 1.468565 GCGCGAGTGACACCAGTAATA 60.469 52.381 12.10 0.00 0.00 0.98
209 210 2.871133 CGCGAGTGACACCAGTAATAA 58.129 47.619 0.00 0.00 0.00 1.40
210 211 3.444916 CGCGAGTGACACCAGTAATAAT 58.555 45.455 0.00 0.00 0.00 1.28
211 212 4.603985 CGCGAGTGACACCAGTAATAATA 58.396 43.478 0.00 0.00 0.00 0.98
212 213 4.440103 CGCGAGTGACACCAGTAATAATAC 59.560 45.833 0.00 0.00 0.00 1.89
213 214 5.589192 GCGAGTGACACCAGTAATAATACT 58.411 41.667 0.84 0.00 43.22 2.12
214 215 6.512253 CGCGAGTGACACCAGTAATAATACTA 60.512 42.308 0.00 0.00 40.44 1.82
215 216 7.368833 GCGAGTGACACCAGTAATAATACTAT 58.631 38.462 0.84 0.00 40.44 2.12
216 217 8.509690 GCGAGTGACACCAGTAATAATACTATA 58.490 37.037 0.84 0.00 40.44 1.31
234 235 6.365970 ACTATAATCATCACAGGTCCATCC 57.634 41.667 0.00 0.00 0.00 3.51
235 236 5.846164 ACTATAATCATCACAGGTCCATCCA 59.154 40.000 0.00 0.00 39.02 3.41
236 237 3.287867 AATCATCACAGGTCCATCCAC 57.712 47.619 0.00 0.00 39.02 4.02
237 238 0.911769 TCATCACAGGTCCATCCACC 59.088 55.000 0.00 0.00 39.02 4.61
239 240 1.134280 CATCACAGGTCCATCCACCTC 60.134 57.143 0.00 0.00 44.08 3.85
240 241 0.909610 TCACAGGTCCATCCACCTCC 60.910 60.000 0.00 0.00 44.08 4.30
241 242 1.160870 ACAGGTCCATCCACCTCCA 59.839 57.895 0.00 0.00 44.08 3.86
242 243 1.201429 ACAGGTCCATCCACCTCCAC 61.201 60.000 0.00 0.00 44.08 4.02
243 244 1.616628 AGGTCCATCCACCTCCACC 60.617 63.158 0.00 0.00 44.08 4.61
244 245 2.680370 GGTCCATCCACCTCCACCC 61.680 68.421 0.00 0.00 35.97 4.61
245 246 2.286121 TCCATCCACCTCCACCCC 60.286 66.667 0.00 0.00 0.00 4.95
246 247 3.420482 CCATCCACCTCCACCCCC 61.420 72.222 0.00 0.00 0.00 5.40
247 248 2.613696 CATCCACCTCCACCCCCA 60.614 66.667 0.00 0.00 0.00 4.96
248 249 2.212761 ATCCACCTCCACCCCCAA 59.787 61.111 0.00 0.00 0.00 4.12
249 250 1.467190 ATCCACCTCCACCCCCAAA 60.467 57.895 0.00 0.00 0.00 3.28
250 251 1.077298 ATCCACCTCCACCCCCAAAA 61.077 55.000 0.00 0.00 0.00 2.44
251 252 1.228862 CCACCTCCACCCCCAAAAG 60.229 63.158 0.00 0.00 0.00 2.27
252 253 1.908299 CACCTCCACCCCCAAAAGC 60.908 63.158 0.00 0.00 0.00 3.51
253 254 2.091283 ACCTCCACCCCCAAAAGCT 61.091 57.895 0.00 0.00 0.00 3.74
254 255 0.774491 ACCTCCACCCCCAAAAGCTA 60.774 55.000 0.00 0.00 0.00 3.32
255 256 0.323451 CCTCCACCCCCAAAAGCTAC 60.323 60.000 0.00 0.00 0.00 3.58
256 257 0.323451 CTCCACCCCCAAAAGCTACC 60.323 60.000 0.00 0.00 0.00 3.18
257 258 1.068943 TCCACCCCCAAAAGCTACCA 61.069 55.000 0.00 0.00 0.00 3.25
258 259 0.898326 CCACCCCCAAAAGCTACCAC 60.898 60.000 0.00 0.00 0.00 4.16
259 260 0.898326 CACCCCCAAAAGCTACCACC 60.898 60.000 0.00 0.00 0.00 4.61
260 261 1.677633 CCCCCAAAAGCTACCACCG 60.678 63.158 0.00 0.00 0.00 4.94
261 262 2.340328 CCCCAAAAGCTACCACCGC 61.340 63.158 0.00 0.00 0.00 5.68
262 263 2.340328 CCCAAAAGCTACCACCGCC 61.340 63.158 0.00 0.00 0.00 6.13
263 264 1.602323 CCAAAAGCTACCACCGCCA 60.602 57.895 0.00 0.00 0.00 5.69
264 265 0.965363 CCAAAAGCTACCACCGCCAT 60.965 55.000 0.00 0.00 0.00 4.40
265 266 0.171007 CAAAAGCTACCACCGCCATG 59.829 55.000 0.00 0.00 0.00 3.66
266 267 0.251165 AAAAGCTACCACCGCCATGT 60.251 50.000 0.00 0.00 0.00 3.21
267 268 0.251165 AAAGCTACCACCGCCATGTT 60.251 50.000 0.00 0.00 0.00 2.71
268 269 0.251165 AAGCTACCACCGCCATGTTT 60.251 50.000 0.00 0.00 0.00 2.83
269 270 0.960364 AGCTACCACCGCCATGTTTG 60.960 55.000 0.00 0.00 0.00 2.93
270 271 1.506262 CTACCACCGCCATGTTTGC 59.494 57.895 0.00 0.00 0.00 3.68
271 272 0.960364 CTACCACCGCCATGTTTGCT 60.960 55.000 0.00 0.00 0.00 3.91
272 273 0.538516 TACCACCGCCATGTTTGCTT 60.539 50.000 0.00 0.00 0.00 3.91
273 274 1.367102 CCACCGCCATGTTTGCTTT 59.633 52.632 0.00 0.00 0.00 3.51
274 275 0.249826 CCACCGCCATGTTTGCTTTT 60.250 50.000 0.00 0.00 0.00 2.27
275 276 1.139163 CACCGCCATGTTTGCTTTTC 58.861 50.000 0.00 0.00 0.00 2.29
276 277 1.039856 ACCGCCATGTTTGCTTTTCT 58.960 45.000 0.00 0.00 0.00 2.52
277 278 1.412343 ACCGCCATGTTTGCTTTTCTT 59.588 42.857 0.00 0.00 0.00 2.52
278 279 2.158971 ACCGCCATGTTTGCTTTTCTTT 60.159 40.909 0.00 0.00 0.00 2.52
279 280 2.871633 CCGCCATGTTTGCTTTTCTTTT 59.128 40.909 0.00 0.00 0.00 2.27
280 281 3.059665 CCGCCATGTTTGCTTTTCTTTTC 60.060 43.478 0.00 0.00 0.00 2.29
281 282 3.555139 CGCCATGTTTGCTTTTCTTTTCA 59.445 39.130 0.00 0.00 0.00 2.69
282 283 4.318263 CGCCATGTTTGCTTTTCTTTTCAG 60.318 41.667 0.00 0.00 0.00 3.02
283 284 4.024641 GCCATGTTTGCTTTTCTTTTCAGG 60.025 41.667 0.00 0.00 0.00 3.86
284 285 4.024641 CCATGTTTGCTTTTCTTTTCAGGC 60.025 41.667 0.00 0.00 0.00 4.85
285 286 4.470334 TGTTTGCTTTTCTTTTCAGGCT 57.530 36.364 0.00 0.00 0.00 4.58
286 287 5.590530 TGTTTGCTTTTCTTTTCAGGCTA 57.409 34.783 0.00 0.00 0.00 3.93
287 288 6.160576 TGTTTGCTTTTCTTTTCAGGCTAT 57.839 33.333 0.00 0.00 0.00 2.97
288 289 5.984926 TGTTTGCTTTTCTTTTCAGGCTATG 59.015 36.000 0.00 0.00 0.00 2.23
289 290 4.178545 TGCTTTTCTTTTCAGGCTATGC 57.821 40.909 0.00 0.00 0.00 3.14
290 291 3.174375 GCTTTTCTTTTCAGGCTATGCG 58.826 45.455 0.00 0.00 0.00 4.73
291 292 3.762779 CTTTTCTTTTCAGGCTATGCGG 58.237 45.455 0.00 0.00 0.00 5.69
292 293 1.094785 TTCTTTTCAGGCTATGCGGC 58.905 50.000 0.00 0.00 38.75 6.53
300 301 3.498676 GGCTATGCGGCTGTACTAG 57.501 57.895 0.00 0.00 34.85 2.57
301 302 0.674534 GGCTATGCGGCTGTACTAGT 59.325 55.000 0.00 0.00 34.85 2.57
302 303 1.884579 GGCTATGCGGCTGTACTAGTA 59.115 52.381 0.00 0.00 34.85 1.82
303 304 2.095161 GGCTATGCGGCTGTACTAGTAG 60.095 54.545 1.87 0.00 34.85 2.57
304 305 2.668834 GCTATGCGGCTGTACTAGTAGC 60.669 54.545 8.86 8.86 39.17 3.58
305 306 1.693627 ATGCGGCTGTACTAGTAGCT 58.306 50.000 15.53 0.00 39.80 3.32
306 307 2.336945 TGCGGCTGTACTAGTAGCTA 57.663 50.000 15.53 0.00 39.80 3.32
307 308 1.945394 TGCGGCTGTACTAGTAGCTAC 59.055 52.381 16.43 16.43 39.80 3.58
308 309 2.220313 GCGGCTGTACTAGTAGCTACT 58.780 52.381 28.50 28.50 39.80 2.57
309 310 2.223845 GCGGCTGTACTAGTAGCTACTC 59.776 54.545 29.28 15.61 39.80 2.59
310 311 2.807392 CGGCTGTACTAGTAGCTACTCC 59.193 54.545 29.28 20.06 39.80 3.85
311 312 3.494749 CGGCTGTACTAGTAGCTACTCCT 60.495 52.174 29.28 17.34 39.80 3.69
312 313 4.262377 CGGCTGTACTAGTAGCTACTCCTA 60.262 50.000 29.28 16.36 39.80 2.94
313 314 5.240121 GGCTGTACTAGTAGCTACTCCTAG 58.760 50.000 29.28 22.37 39.80 3.02
314 315 5.011943 GGCTGTACTAGTAGCTACTCCTAGA 59.988 48.000 29.28 16.14 39.80 2.43
315 316 6.161381 GCTGTACTAGTAGCTACTCCTAGAG 58.839 48.000 29.28 23.67 37.73 2.43
316 317 6.015180 GCTGTACTAGTAGCTACTCCTAGAGA 60.015 46.154 29.28 9.74 37.73 3.10
317 318 7.288810 TGTACTAGTAGCTACTCCTAGAGAC 57.711 44.000 29.28 21.16 37.73 3.36
318 319 7.068702 TGTACTAGTAGCTACTCCTAGAGACT 58.931 42.308 29.28 6.68 37.73 3.24
319 320 7.564660 TGTACTAGTAGCTACTCCTAGAGACTT 59.435 40.741 29.28 8.27 37.73 3.01
320 321 6.823497 ACTAGTAGCTACTCCTAGAGACTTG 58.177 44.000 29.28 7.67 37.73 3.16
321 322 4.457466 AGTAGCTACTCCTAGAGACTTGC 58.543 47.826 20.95 0.00 33.32 4.01
322 323 3.662759 AGCTACTCCTAGAGACTTGCT 57.337 47.619 0.00 0.16 33.32 3.91
323 324 3.976015 AGCTACTCCTAGAGACTTGCTT 58.024 45.455 0.00 0.00 33.32 3.91
324 325 3.699038 AGCTACTCCTAGAGACTTGCTTG 59.301 47.826 0.00 0.00 33.32 4.01
325 326 3.697045 GCTACTCCTAGAGACTTGCTTGA 59.303 47.826 0.00 0.00 33.32 3.02
326 327 4.439563 GCTACTCCTAGAGACTTGCTTGAC 60.440 50.000 0.00 0.00 33.32 3.18
327 328 2.490115 ACTCCTAGAGACTTGCTTGACG 59.510 50.000 0.00 0.00 33.32 4.35
328 329 1.819288 TCCTAGAGACTTGCTTGACGG 59.181 52.381 0.00 0.00 0.00 4.79
329 330 1.134965 CCTAGAGACTTGCTTGACGGG 60.135 57.143 0.00 0.00 0.00 5.28
330 331 0.895530 TAGAGACTTGCTTGACGGGG 59.104 55.000 0.00 0.00 0.00 5.73
331 332 2.032681 AGACTTGCTTGACGGGGC 59.967 61.111 0.00 0.00 0.00 5.80
332 333 2.281484 GACTTGCTTGACGGGGCA 60.281 61.111 0.00 0.00 36.62 5.36
333 334 2.281761 ACTTGCTTGACGGGGCAG 60.282 61.111 0.00 0.00 39.68 4.85
334 335 2.281761 CTTGCTTGACGGGGCAGT 60.282 61.111 0.00 0.00 39.68 4.40
335 336 2.594303 TTGCTTGACGGGGCAGTG 60.594 61.111 0.00 0.00 39.68 3.66
336 337 3.113514 TTGCTTGACGGGGCAGTGA 62.114 57.895 0.00 0.00 39.68 3.41
337 338 2.281484 GCTTGACGGGGCAGTGAA 60.281 61.111 0.00 0.00 0.00 3.18
338 339 2.617274 GCTTGACGGGGCAGTGAAC 61.617 63.158 0.00 0.00 0.00 3.18
339 340 1.227823 CTTGACGGGGCAGTGAACA 60.228 57.895 0.00 0.00 0.00 3.18
340 341 1.227823 TTGACGGGGCAGTGAACAG 60.228 57.895 0.00 0.00 0.00 3.16
341 342 2.358737 GACGGGGCAGTGAACAGG 60.359 66.667 0.00 0.00 0.00 4.00
342 343 4.643387 ACGGGGCAGTGAACAGGC 62.643 66.667 0.00 0.00 0.00 4.85
348 349 2.360350 CAGTGAACAGGCCGGCAT 60.360 61.111 30.85 21.35 0.00 4.40
349 350 2.360350 AGTGAACAGGCCGGCATG 60.360 61.111 37.40 37.40 0.00 4.06
350 351 3.443045 GTGAACAGGCCGGCATGG 61.443 66.667 40.47 25.27 42.50 3.66
351 352 4.738998 TGAACAGGCCGGCATGGG 62.739 66.667 40.47 21.01 38.63 4.00
363 364 4.415150 CATGGGCAGTGCGGTCCT 62.415 66.667 9.45 0.00 0.00 3.85
364 365 4.415150 ATGGGCAGTGCGGTCCTG 62.415 66.667 9.45 0.00 0.00 3.86
369 370 4.335647 CAGTGCGGTCCTGGCCTT 62.336 66.667 3.32 0.00 0.00 4.35
370 371 4.021925 AGTGCGGTCCTGGCCTTC 62.022 66.667 3.32 0.00 0.00 3.46
371 372 4.021925 GTGCGGTCCTGGCCTTCT 62.022 66.667 3.32 0.00 0.00 2.85
372 373 4.020617 TGCGGTCCTGGCCTTCTG 62.021 66.667 3.32 0.00 0.00 3.02
375 376 4.021925 GGTCCTGGCCTTCTGCGT 62.022 66.667 3.32 0.00 42.61 5.24
376 377 2.032681 GTCCTGGCCTTCTGCGTT 59.967 61.111 3.32 0.00 42.61 4.84
377 378 1.600916 GTCCTGGCCTTCTGCGTTT 60.601 57.895 3.32 0.00 42.61 3.60
378 379 1.302511 TCCTGGCCTTCTGCGTTTC 60.303 57.895 3.32 0.00 42.61 2.78
379 380 1.302832 CCTGGCCTTCTGCGTTTCT 60.303 57.895 3.32 0.00 42.61 2.52
380 381 0.890996 CCTGGCCTTCTGCGTTTCTT 60.891 55.000 3.32 0.00 42.61 2.52
381 382 0.519077 CTGGCCTTCTGCGTTTCTTC 59.481 55.000 3.32 0.00 42.61 2.87
382 383 0.108585 TGGCCTTCTGCGTTTCTTCT 59.891 50.000 3.32 0.00 42.61 2.85
383 384 0.799393 GGCCTTCTGCGTTTCTTCTC 59.201 55.000 0.00 0.00 42.61 2.87
384 385 1.609320 GGCCTTCTGCGTTTCTTCTCT 60.609 52.381 0.00 0.00 42.61 3.10
385 386 2.147150 GCCTTCTGCGTTTCTTCTCTT 58.853 47.619 0.00 0.00 0.00 2.85
386 387 2.096019 GCCTTCTGCGTTTCTTCTCTTG 60.096 50.000 0.00 0.00 0.00 3.02
387 388 3.134458 CCTTCTGCGTTTCTTCTCTTGT 58.866 45.455 0.00 0.00 0.00 3.16
388 389 3.059325 CCTTCTGCGTTTCTTCTCTTGTG 60.059 47.826 0.00 0.00 0.00 3.33
389 390 3.179443 TCTGCGTTTCTTCTCTTGTGT 57.821 42.857 0.00 0.00 0.00 3.72
390 391 3.531538 TCTGCGTTTCTTCTCTTGTGTT 58.468 40.909 0.00 0.00 0.00 3.32
391 392 3.309682 TCTGCGTTTCTTCTCTTGTGTTG 59.690 43.478 0.00 0.00 0.00 3.33
392 393 3.006940 TGCGTTTCTTCTCTTGTGTTGT 58.993 40.909 0.00 0.00 0.00 3.32
393 394 3.181511 TGCGTTTCTTCTCTTGTGTTGTG 60.182 43.478 0.00 0.00 0.00 3.33
394 395 3.354397 CGTTTCTTCTCTTGTGTTGTGC 58.646 45.455 0.00 0.00 0.00 4.57
395 396 3.181511 CGTTTCTTCTCTTGTGTTGTGCA 60.182 43.478 0.00 0.00 0.00 4.57
396 397 4.496341 CGTTTCTTCTCTTGTGTTGTGCAT 60.496 41.667 0.00 0.00 0.00 3.96
397 398 5.343249 GTTTCTTCTCTTGTGTTGTGCATT 58.657 37.500 0.00 0.00 0.00 3.56
398 399 6.494842 GTTTCTTCTCTTGTGTTGTGCATTA 58.505 36.000 0.00 0.00 0.00 1.90
399 400 6.691754 TTCTTCTCTTGTGTTGTGCATTAA 57.308 33.333 0.00 0.00 0.00 1.40
400 401 6.882610 TCTTCTCTTGTGTTGTGCATTAAT 57.117 33.333 0.00 0.00 0.00 1.40
401 402 6.902341 TCTTCTCTTGTGTTGTGCATTAATC 58.098 36.000 0.00 0.00 0.00 1.75
402 403 5.281693 TCTCTTGTGTTGTGCATTAATCG 57.718 39.130 0.00 0.00 0.00 3.34
403 404 4.994217 TCTCTTGTGTTGTGCATTAATCGA 59.006 37.500 0.00 0.00 0.00 3.59
404 405 5.120674 TCTCTTGTGTTGTGCATTAATCGAG 59.879 40.000 0.00 0.00 0.00 4.04
405 406 3.469899 TGTGTTGTGCATTAATCGAGC 57.530 42.857 0.00 0.00 0.00 5.03
406 407 3.073678 TGTGTTGTGCATTAATCGAGCT 58.926 40.909 0.00 0.00 0.00 4.09
407 408 3.501828 TGTGTTGTGCATTAATCGAGCTT 59.498 39.130 0.00 0.00 0.00 3.74
408 409 4.023279 TGTGTTGTGCATTAATCGAGCTTT 60.023 37.500 0.00 0.00 0.00 3.51
409 410 4.554973 GTGTTGTGCATTAATCGAGCTTTC 59.445 41.667 0.00 0.00 0.00 2.62
410 411 4.455533 TGTTGTGCATTAATCGAGCTTTCT 59.544 37.500 0.00 0.00 0.00 2.52
411 412 4.864916 TGTGCATTAATCGAGCTTTCTC 57.135 40.909 0.00 0.00 35.99 2.87
412 413 3.623060 TGTGCATTAATCGAGCTTTCTCC 59.377 43.478 0.00 0.00 35.94 3.71
413 414 3.873952 GTGCATTAATCGAGCTTTCTCCT 59.126 43.478 0.00 0.00 35.94 3.69
414 415 3.873361 TGCATTAATCGAGCTTTCTCCTG 59.127 43.478 0.00 0.00 35.94 3.86
415 416 3.303659 GCATTAATCGAGCTTTCTCCTGC 60.304 47.826 0.00 0.00 35.94 4.85
416 417 3.895232 TTAATCGAGCTTTCTCCTGCT 57.105 42.857 0.00 0.00 42.82 4.24
422 423 2.125773 AGCTTTCTCCTGCTCATTGG 57.874 50.000 0.00 0.00 33.90 3.16
423 424 0.455005 GCTTTCTCCTGCTCATTGGC 59.545 55.000 0.00 0.00 0.00 4.52
424 425 1.101331 CTTTCTCCTGCTCATTGGCC 58.899 55.000 0.00 0.00 0.00 5.36
425 426 0.405198 TTTCTCCTGCTCATTGGCCA 59.595 50.000 0.00 0.00 0.00 5.36
426 427 0.627451 TTCTCCTGCTCATTGGCCAT 59.373 50.000 6.09 0.00 0.00 4.40
427 428 0.106868 TCTCCTGCTCATTGGCCATG 60.107 55.000 6.09 7.61 0.00 3.66
428 429 1.076559 TCCTGCTCATTGGCCATGG 60.077 57.895 6.09 7.63 33.07 3.66
429 430 1.076559 CCTGCTCATTGGCCATGGA 60.077 57.895 18.40 6.46 33.07 3.41
430 431 0.469331 CCTGCTCATTGGCCATGGAT 60.469 55.000 18.40 0.00 33.07 3.41
431 432 0.673985 CTGCTCATTGGCCATGGATG 59.326 55.000 18.40 10.90 33.07 3.51
432 433 0.032912 TGCTCATTGGCCATGGATGT 60.033 50.000 18.40 0.00 33.07 3.06
433 434 0.387929 GCTCATTGGCCATGGATGTG 59.612 55.000 18.40 12.29 33.07 3.21
434 435 1.771565 CTCATTGGCCATGGATGTGT 58.228 50.000 18.40 0.00 33.07 3.72
435 436 2.934887 CTCATTGGCCATGGATGTGTA 58.065 47.619 18.40 0.00 33.07 2.90
436 437 2.620115 CTCATTGGCCATGGATGTGTAC 59.380 50.000 18.40 0.00 33.07 2.90
437 438 2.241941 TCATTGGCCATGGATGTGTACT 59.758 45.455 18.40 0.00 33.07 2.73
438 439 2.127271 TTGGCCATGGATGTGTACTG 57.873 50.000 18.40 0.00 0.00 2.74
439 440 0.255604 TGGCCATGGATGTGTACTGG 59.744 55.000 18.40 0.00 0.00 4.00
440 441 2.408333 GCCATGGATGTGTACTGGC 58.592 57.895 18.40 4.49 44.91 4.85
441 442 0.107017 GCCATGGATGTGTACTGGCT 60.107 55.000 18.40 0.00 46.97 4.75
442 443 1.671979 CCATGGATGTGTACTGGCTG 58.328 55.000 5.56 0.00 0.00 4.85
443 444 1.019673 CATGGATGTGTACTGGCTGC 58.980 55.000 0.00 0.00 0.00 5.25
444 445 0.620030 ATGGATGTGTACTGGCTGCA 59.380 50.000 0.50 0.00 0.00 4.41
445 446 0.321564 TGGATGTGTACTGGCTGCAC 60.322 55.000 0.50 0.00 36.09 4.57
446 447 1.361668 GGATGTGTACTGGCTGCACG 61.362 60.000 0.50 0.00 38.28 5.34
447 448 1.361668 GATGTGTACTGGCTGCACGG 61.362 60.000 0.50 0.00 38.28 4.94
448 449 3.423154 GTGTACTGGCTGCACGGC 61.423 66.667 0.50 0.00 38.97 5.68
449 450 3.625897 TGTACTGGCTGCACGGCT 61.626 61.111 0.50 0.00 39.32 5.52
450 451 3.121030 GTACTGGCTGCACGGCTG 61.121 66.667 0.50 12.37 41.90 4.85
511 512 0.464452 GGTAATAGCACGGCAGGTCT 59.536 55.000 0.00 0.00 0.00 3.85
512 513 1.571919 GTAATAGCACGGCAGGTCTG 58.428 55.000 0.00 0.00 0.00 3.51
533 534 1.337703 TGAACTTGCCTTGCATGTGAC 59.662 47.619 8.16 6.88 44.18 3.67
539 540 2.580962 TGCCTTGCATGTGACACTTTA 58.419 42.857 7.20 0.00 31.71 1.85
609 610 2.949177 TGTGCATGTTTAGTCCTGGT 57.051 45.000 0.00 0.00 0.00 4.00
679 680 1.272928 TGGCCATTTTGCAGATACCCA 60.273 47.619 0.00 0.00 0.00 4.51
714 718 0.035056 ATAAACTGCTGGCCTCGCTT 60.035 50.000 16.66 7.28 0.00 4.68
1180 1263 2.438434 CCGATTCCACTGGCCCAC 60.438 66.667 0.00 0.00 0.00 4.61
1407 1490 2.669300 TCTACGTCTACTGCGAGTCT 57.331 50.000 0.00 0.00 0.00 3.24
1440 1523 2.438975 TACCATCTCGACGCCGGT 60.439 61.111 1.90 0.00 36.24 5.28
1448 1531 2.740826 CGACGCCGGTTCATGGTT 60.741 61.111 1.90 0.00 0.00 3.67
1760 1846 4.699522 GACGGCTTGCCGGGTCTT 62.700 66.667 32.83 15.42 37.53 3.01
1796 1915 0.909133 TGGAGCTGCACCATGTCCTA 60.909 55.000 15.01 0.00 32.03 2.94
1798 1917 0.539051 GAGCTGCACCATGTCCTACT 59.461 55.000 1.02 0.00 0.00 2.57
1912 2035 1.471287 GAGCTGCTGATTGATGTGCAA 59.529 47.619 7.01 0.00 41.53 4.08
2034 2195 5.475220 AGAGAGATTGTTCAGAGACGAAGAA 59.525 40.000 0.00 0.00 33.28 2.52
2054 2220 2.511659 ACAGTAGCGTAAGAGGTGTGA 58.488 47.619 0.00 0.00 43.02 3.58
2142 2311 3.764466 CCAAGCTCGCCCTCGACT 61.764 66.667 0.00 0.00 40.21 4.18
2257 2466 0.793250 GGAAGTTCTTCAGCTCGCAC 59.207 55.000 13.44 0.00 0.00 5.34
2409 2626 0.986019 TACCCCATCGGCATCAAGGT 60.986 55.000 0.00 0.00 33.26 3.50
2416 2633 3.364441 GGCATCAAGGTGCACGCA 61.364 61.111 11.45 0.00 46.81 5.24
2694 2954 3.609853 GTGATATCCTTTGACAGCCACA 58.390 45.455 0.00 0.00 0.00 4.17
2725 2986 2.683968 CGGGTTGAAATCGACAGAAGA 58.316 47.619 3.35 0.00 31.82 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.012237 CAGGCATCACGTGAGCATC 58.988 57.895 28.66 18.33 36.20 3.91
11 12 2.110967 GCAGGCATCACGTGAGCAT 61.111 57.895 28.66 23.46 36.20 3.79
12 13 2.743538 GCAGGCATCACGTGAGCA 60.744 61.111 28.66 9.59 36.20 4.26
13 14 3.503363 GGCAGGCATCACGTGAGC 61.503 66.667 24.41 23.80 36.20 4.26
14 15 1.812922 GAGGCAGGCATCACGTGAG 60.813 63.158 24.41 16.12 36.20 3.51
15 16 2.265739 GAGGCAGGCATCACGTGA 59.734 61.111 22.48 22.48 36.20 4.35
16 17 1.960040 TAGGAGGCAGGCATCACGTG 61.960 60.000 9.94 9.94 37.22 4.49
17 18 1.685765 TAGGAGGCAGGCATCACGT 60.686 57.895 8.27 0.00 0.00 4.49
18 19 1.227380 GTAGGAGGCAGGCATCACG 60.227 63.158 8.27 0.00 0.00 4.35
19 20 1.227380 CGTAGGAGGCAGGCATCAC 60.227 63.158 8.27 0.00 0.00 3.06
20 21 3.220222 CGTAGGAGGCAGGCATCA 58.780 61.111 8.27 0.00 0.00 3.07
43 44 6.069814 AGATCGATCTCTTCCGTTCGTACG 62.070 50.000 22.32 9.53 39.06 3.67
44 45 3.248125 AGATCGATCTCTTCCGTTCGTAC 59.752 47.826 22.32 0.00 29.30 3.67
45 46 3.464907 AGATCGATCTCTTCCGTTCGTA 58.535 45.455 22.32 0.00 29.30 3.43
46 47 2.290464 AGATCGATCTCTTCCGTTCGT 58.710 47.619 22.32 0.00 29.30 3.85
70 71 1.202222 CCGTGTGTGTATACCGGAGAC 60.202 57.143 9.46 2.93 36.89 3.36
71 72 1.097232 CCGTGTGTGTATACCGGAGA 58.903 55.000 9.46 0.00 36.89 3.71
72 73 1.097232 TCCGTGTGTGTATACCGGAG 58.903 55.000 9.46 0.00 37.99 4.63
73 74 1.406180 CATCCGTGTGTGTATACCGGA 59.594 52.381 18.47 18.47 42.90 5.14
74 75 1.847818 CATCCGTGTGTGTATACCGG 58.152 55.000 0.00 0.00 36.43 5.28
75 76 1.205657 GCATCCGTGTGTGTATACCG 58.794 55.000 0.00 0.00 0.00 4.02
76 77 1.202325 TCGCATCCGTGTGTGTATACC 60.202 52.381 0.00 0.00 37.16 2.73
77 78 2.117137 CTCGCATCCGTGTGTGTATAC 58.883 52.381 0.00 0.00 37.16 1.47
78 79 1.066454 CCTCGCATCCGTGTGTGTATA 59.934 52.381 0.00 0.00 37.16 1.47
79 80 0.179111 CCTCGCATCCGTGTGTGTAT 60.179 55.000 0.00 0.00 37.16 2.29
80 81 1.214325 CCTCGCATCCGTGTGTGTA 59.786 57.895 0.00 0.00 37.16 2.90
81 82 2.048222 CCTCGCATCCGTGTGTGT 60.048 61.111 0.00 0.00 37.16 3.72
82 83 2.815211 CCCTCGCATCCGTGTGTG 60.815 66.667 0.00 0.00 37.16 3.82
83 84 4.082523 CCCCTCGCATCCGTGTGT 62.083 66.667 0.00 0.00 37.16 3.72
94 95 1.749334 ATAAAGAGCCTCGCCCCTCG 61.749 60.000 0.00 0.00 40.15 4.63
95 96 0.034198 GATAAAGAGCCTCGCCCCTC 59.966 60.000 0.00 0.00 0.00 4.30
96 97 1.749334 CGATAAAGAGCCTCGCCCCT 61.749 60.000 0.00 0.00 0.00 4.79
97 98 1.301009 CGATAAAGAGCCTCGCCCC 60.301 63.158 0.00 0.00 0.00 5.80
98 99 0.319125 CTCGATAAAGAGCCTCGCCC 60.319 60.000 0.00 0.00 32.62 6.13
99 100 0.386113 ACTCGATAAAGAGCCTCGCC 59.614 55.000 0.00 0.00 41.77 5.54
100 101 1.482278 CACTCGATAAAGAGCCTCGC 58.518 55.000 0.00 0.00 41.77 5.03
101 102 1.482278 GCACTCGATAAAGAGCCTCG 58.518 55.000 0.00 0.00 41.77 4.63
102 103 1.859383 GGCACTCGATAAAGAGCCTC 58.141 55.000 5.28 0.00 46.06 4.70
103 104 0.103208 CGGCACTCGATAAAGAGCCT 59.897 55.000 10.00 0.00 46.98 4.58
104 105 0.179108 ACGGCACTCGATAAAGAGCC 60.179 55.000 2.70 2.70 46.07 4.70
105 106 0.924090 CACGGCACTCGATAAAGAGC 59.076 55.000 0.00 0.00 41.77 4.09
106 107 0.924090 GCACGGCACTCGATAAAGAG 59.076 55.000 0.00 0.00 42.43 2.85
107 108 0.530744 AGCACGGCACTCGATAAAGA 59.469 50.000 0.00 0.00 42.43 2.52
108 109 0.924090 GAGCACGGCACTCGATAAAG 59.076 55.000 0.00 0.00 42.43 1.85
109 110 0.459585 GGAGCACGGCACTCGATAAA 60.460 55.000 0.00 0.00 42.43 1.40
110 111 1.141019 GGAGCACGGCACTCGATAA 59.859 57.895 0.00 0.00 42.43 1.75
111 112 1.600511 TTGGAGCACGGCACTCGATA 61.601 55.000 0.00 0.00 42.43 2.92
112 113 2.842394 CTTGGAGCACGGCACTCGAT 62.842 60.000 0.00 0.00 42.43 3.59
113 114 3.573772 CTTGGAGCACGGCACTCGA 62.574 63.158 0.00 0.00 42.43 4.04
114 115 3.114616 CTTGGAGCACGGCACTCG 61.115 66.667 0.00 0.00 45.88 4.18
115 116 0.884704 TTTCTTGGAGCACGGCACTC 60.885 55.000 0.00 0.00 0.00 3.51
116 117 0.465460 TTTTCTTGGAGCACGGCACT 60.465 50.000 0.00 0.00 0.00 4.40
117 118 0.383949 TTTTTCTTGGAGCACGGCAC 59.616 50.000 0.00 0.00 0.00 5.01
118 119 0.667993 CTTTTTCTTGGAGCACGGCA 59.332 50.000 0.00 0.00 0.00 5.69
119 120 0.039165 CCTTTTTCTTGGAGCACGGC 60.039 55.000 0.00 0.00 0.00 5.68
120 121 0.039165 GCCTTTTTCTTGGAGCACGG 60.039 55.000 0.00 0.00 0.00 4.94
121 122 0.039165 GGCCTTTTTCTTGGAGCACG 60.039 55.000 0.00 0.00 0.00 5.34
122 123 0.039165 CGGCCTTTTTCTTGGAGCAC 60.039 55.000 0.00 0.00 0.00 4.40
123 124 0.179004 TCGGCCTTTTTCTTGGAGCA 60.179 50.000 0.00 0.00 0.00 4.26
124 125 0.958822 TTCGGCCTTTTTCTTGGAGC 59.041 50.000 0.00 0.00 0.00 4.70
125 126 2.884639 TCTTTCGGCCTTTTTCTTGGAG 59.115 45.455 0.00 0.00 0.00 3.86
126 127 2.884639 CTCTTTCGGCCTTTTTCTTGGA 59.115 45.455 0.00 0.00 0.00 3.53
127 128 2.029918 CCTCTTTCGGCCTTTTTCTTGG 60.030 50.000 0.00 0.00 0.00 3.61
128 129 2.029918 CCCTCTTTCGGCCTTTTTCTTG 60.030 50.000 0.00 0.00 0.00 3.02
129 130 2.239400 CCCTCTTTCGGCCTTTTTCTT 58.761 47.619 0.00 0.00 0.00 2.52
130 131 1.911057 CCCTCTTTCGGCCTTTTTCT 58.089 50.000 0.00 0.00 0.00 2.52
131 132 0.243907 GCCCTCTTTCGGCCTTTTTC 59.756 55.000 0.00 0.00 40.78 2.29
132 133 1.524008 CGCCCTCTTTCGGCCTTTTT 61.524 55.000 0.00 0.00 43.98 1.94
133 134 1.971695 CGCCCTCTTTCGGCCTTTT 60.972 57.895 0.00 0.00 43.98 2.27
134 135 2.359975 CGCCCTCTTTCGGCCTTT 60.360 61.111 0.00 0.00 43.98 3.11
139 140 4.697756 TGGTGCGCCCTCTTTCGG 62.698 66.667 15.15 0.00 0.00 4.30
140 141 3.423154 GTGGTGCGCCCTCTTTCG 61.423 66.667 15.15 0.00 0.00 3.46
141 142 1.244019 AATGTGGTGCGCCCTCTTTC 61.244 55.000 15.15 0.00 0.00 2.62
142 143 1.228552 AATGTGGTGCGCCCTCTTT 60.229 52.632 15.15 8.64 0.00 2.52
143 144 1.973281 CAATGTGGTGCGCCCTCTT 60.973 57.895 15.15 0.88 0.00 2.85
144 145 2.360350 CAATGTGGTGCGCCCTCT 60.360 61.111 15.15 0.00 0.00 3.69
145 146 3.443045 CCAATGTGGTGCGCCCTC 61.443 66.667 15.15 7.75 31.35 4.30
149 150 3.704908 GATGGCCAATGTGGTGCGC 62.705 63.158 10.96 0.00 40.46 6.09
150 151 1.875420 TTGATGGCCAATGTGGTGCG 61.875 55.000 10.96 0.00 40.46 5.34
151 152 0.538118 ATTGATGGCCAATGTGGTGC 59.462 50.000 10.96 0.00 43.46 5.01
152 153 1.826096 TGATTGATGGCCAATGTGGTG 59.174 47.619 10.96 0.00 45.00 4.17
153 154 2.234896 TGATTGATGGCCAATGTGGT 57.765 45.000 10.96 0.00 45.00 4.16
154 155 2.805295 GCATGATTGATGGCCAATGTGG 60.805 50.000 10.96 0.00 45.00 4.17
155 156 2.479837 GCATGATTGATGGCCAATGTG 58.520 47.619 10.96 3.33 45.00 3.21
156 157 2.902705 GCATGATTGATGGCCAATGT 57.097 45.000 10.96 0.00 45.00 2.71
187 188 2.758770 TTACTGGTGTCACTCGCGCC 62.759 60.000 0.00 0.00 37.06 6.53
188 189 0.736325 ATTACTGGTGTCACTCGCGC 60.736 55.000 0.00 0.00 0.00 6.86
189 190 2.554806 TATTACTGGTGTCACTCGCG 57.445 50.000 0.00 0.00 0.00 5.87
190 191 5.589192 AGTATTATTACTGGTGTCACTCGC 58.411 41.667 2.35 0.00 37.28 5.03
208 209 8.543774 GGATGGACCTGTGATGATTATAGTATT 58.456 37.037 0.00 0.00 35.41 1.89
209 210 7.679881 TGGATGGACCTGTGATGATTATAGTAT 59.320 37.037 0.00 0.00 39.86 2.12
210 211 7.016296 TGGATGGACCTGTGATGATTATAGTA 58.984 38.462 0.00 0.00 39.86 1.82
211 212 5.846164 TGGATGGACCTGTGATGATTATAGT 59.154 40.000 0.00 0.00 39.86 2.12
212 213 6.169094 GTGGATGGACCTGTGATGATTATAG 58.831 44.000 0.00 0.00 39.86 1.31
213 214 5.013079 GGTGGATGGACCTGTGATGATTATA 59.987 44.000 0.00 0.00 39.86 0.98
214 215 4.202503 GGTGGATGGACCTGTGATGATTAT 60.203 45.833 0.00 0.00 39.86 1.28
215 216 3.136443 GGTGGATGGACCTGTGATGATTA 59.864 47.826 0.00 0.00 39.86 1.75
216 217 2.092212 GGTGGATGGACCTGTGATGATT 60.092 50.000 0.00 0.00 39.86 2.57
217 218 1.492176 GGTGGATGGACCTGTGATGAT 59.508 52.381 0.00 0.00 39.86 2.45
218 219 0.911769 GGTGGATGGACCTGTGATGA 59.088 55.000 0.00 0.00 39.86 2.92
219 220 0.914644 AGGTGGATGGACCTGTGATG 59.085 55.000 0.00 0.00 45.20 3.07
220 221 3.424640 AGGTGGATGGACCTGTGAT 57.575 52.632 0.00 0.00 45.20 3.06
221 222 4.998839 AGGTGGATGGACCTGTGA 57.001 55.556 0.00 0.00 45.20 3.58
226 227 2.680370 GGGTGGAGGTGGATGGACC 61.680 68.421 0.00 0.00 39.54 4.46
227 228 2.680370 GGGGTGGAGGTGGATGGAC 61.680 68.421 0.00 0.00 0.00 4.02
228 229 2.286121 GGGGTGGAGGTGGATGGA 60.286 66.667 0.00 0.00 0.00 3.41
229 230 3.420482 GGGGGTGGAGGTGGATGG 61.420 72.222 0.00 0.00 0.00 3.51
230 231 1.799157 TTTGGGGGTGGAGGTGGATG 61.799 60.000 0.00 0.00 0.00 3.51
231 232 1.077298 TTTTGGGGGTGGAGGTGGAT 61.077 55.000 0.00 0.00 0.00 3.41
232 233 1.701757 TTTTGGGGGTGGAGGTGGA 60.702 57.895 0.00 0.00 0.00 4.02
233 234 1.228862 CTTTTGGGGGTGGAGGTGG 60.229 63.158 0.00 0.00 0.00 4.61
234 235 1.908299 GCTTTTGGGGGTGGAGGTG 60.908 63.158 0.00 0.00 0.00 4.00
235 236 0.774491 TAGCTTTTGGGGGTGGAGGT 60.774 55.000 0.00 0.00 0.00 3.85
236 237 0.323451 GTAGCTTTTGGGGGTGGAGG 60.323 60.000 0.00 0.00 0.00 4.30
237 238 0.323451 GGTAGCTTTTGGGGGTGGAG 60.323 60.000 0.00 0.00 0.00 3.86
238 239 1.068943 TGGTAGCTTTTGGGGGTGGA 61.069 55.000 0.00 0.00 0.00 4.02
239 240 0.898326 GTGGTAGCTTTTGGGGGTGG 60.898 60.000 0.00 0.00 0.00 4.61
240 241 0.898326 GGTGGTAGCTTTTGGGGGTG 60.898 60.000 0.00 0.00 0.00 4.61
241 242 1.463375 GGTGGTAGCTTTTGGGGGT 59.537 57.895 0.00 0.00 0.00 4.95
242 243 1.677633 CGGTGGTAGCTTTTGGGGG 60.678 63.158 0.00 0.00 0.00 5.40
243 244 2.340328 GCGGTGGTAGCTTTTGGGG 61.340 63.158 0.00 0.00 0.00 4.96
244 245 2.340328 GGCGGTGGTAGCTTTTGGG 61.340 63.158 0.00 0.00 34.52 4.12
245 246 0.965363 ATGGCGGTGGTAGCTTTTGG 60.965 55.000 0.00 0.00 34.52 3.28
246 247 0.171007 CATGGCGGTGGTAGCTTTTG 59.829 55.000 0.00 0.00 34.52 2.44
247 248 0.251165 ACATGGCGGTGGTAGCTTTT 60.251 50.000 0.00 0.00 34.52 2.27
248 249 0.251165 AACATGGCGGTGGTAGCTTT 60.251 50.000 0.00 0.00 34.52 3.51
249 250 0.251165 AAACATGGCGGTGGTAGCTT 60.251 50.000 0.00 0.00 34.52 3.74
250 251 0.960364 CAAACATGGCGGTGGTAGCT 60.960 55.000 0.00 0.00 34.52 3.32
251 252 1.506262 CAAACATGGCGGTGGTAGC 59.494 57.895 0.00 0.00 0.00 3.58
252 253 0.960364 AGCAAACATGGCGGTGGTAG 60.960 55.000 0.00 0.00 36.08 3.18
253 254 0.538516 AAGCAAACATGGCGGTGGTA 60.539 50.000 0.00 0.00 36.08 3.25
254 255 1.398958 AAAGCAAACATGGCGGTGGT 61.399 50.000 0.00 0.00 36.08 4.16
255 256 0.249826 AAAAGCAAACATGGCGGTGG 60.250 50.000 0.00 0.00 36.08 4.61
256 257 1.139163 GAAAAGCAAACATGGCGGTG 58.861 50.000 0.00 0.00 36.08 4.94
257 258 1.039856 AGAAAAGCAAACATGGCGGT 58.960 45.000 0.00 0.00 36.08 5.68
258 259 2.153366 AAGAAAAGCAAACATGGCGG 57.847 45.000 0.00 0.00 36.08 6.13
259 260 3.555139 TGAAAAGAAAAGCAAACATGGCG 59.445 39.130 0.00 0.00 36.08 5.69
260 261 4.024641 CCTGAAAAGAAAAGCAAACATGGC 60.025 41.667 0.00 0.00 0.00 4.40
261 262 4.024641 GCCTGAAAAGAAAAGCAAACATGG 60.025 41.667 0.00 0.00 0.00 3.66
262 263 4.812626 AGCCTGAAAAGAAAAGCAAACATG 59.187 37.500 0.00 0.00 0.00 3.21
263 264 5.027293 AGCCTGAAAAGAAAAGCAAACAT 57.973 34.783 0.00 0.00 0.00 2.71
264 265 4.470334 AGCCTGAAAAGAAAAGCAAACA 57.530 36.364 0.00 0.00 0.00 2.83
265 266 5.107337 GCATAGCCTGAAAAGAAAAGCAAAC 60.107 40.000 0.00 0.00 0.00 2.93
266 267 4.990426 GCATAGCCTGAAAAGAAAAGCAAA 59.010 37.500 0.00 0.00 0.00 3.68
267 268 4.559153 GCATAGCCTGAAAAGAAAAGCAA 58.441 39.130 0.00 0.00 0.00 3.91
268 269 3.366273 CGCATAGCCTGAAAAGAAAAGCA 60.366 43.478 0.00 0.00 0.00 3.91
269 270 3.174375 CGCATAGCCTGAAAAGAAAAGC 58.826 45.455 0.00 0.00 0.00 3.51
270 271 3.762779 CCGCATAGCCTGAAAAGAAAAG 58.237 45.455 0.00 0.00 0.00 2.27
271 272 2.094752 GCCGCATAGCCTGAAAAGAAAA 60.095 45.455 0.00 0.00 0.00 2.29
272 273 1.472480 GCCGCATAGCCTGAAAAGAAA 59.528 47.619 0.00 0.00 0.00 2.52
273 274 1.094785 GCCGCATAGCCTGAAAAGAA 58.905 50.000 0.00 0.00 0.00 2.52
274 275 0.253044 AGCCGCATAGCCTGAAAAGA 59.747 50.000 0.00 0.00 0.00 2.52
275 276 0.379669 CAGCCGCATAGCCTGAAAAG 59.620 55.000 0.00 0.00 0.00 2.27
276 277 0.322456 ACAGCCGCATAGCCTGAAAA 60.322 50.000 0.00 0.00 0.00 2.29
277 278 0.539518 TACAGCCGCATAGCCTGAAA 59.460 50.000 0.00 0.00 0.00 2.69
278 279 0.179084 GTACAGCCGCATAGCCTGAA 60.179 55.000 0.00 0.00 0.00 3.02
279 280 1.043116 AGTACAGCCGCATAGCCTGA 61.043 55.000 0.00 0.00 0.00 3.86
280 281 0.673985 TAGTACAGCCGCATAGCCTG 59.326 55.000 0.00 0.00 0.00 4.85
281 282 0.962489 CTAGTACAGCCGCATAGCCT 59.038 55.000 0.00 0.00 0.00 4.58
282 283 0.674534 ACTAGTACAGCCGCATAGCC 59.325 55.000 0.00 0.00 0.00 3.93
283 284 2.668834 GCTACTAGTACAGCCGCATAGC 60.669 54.545 6.39 0.00 0.00 2.97
284 285 2.814919 AGCTACTAGTACAGCCGCATAG 59.185 50.000 13.00 0.00 38.61 2.23
285 286 2.860009 AGCTACTAGTACAGCCGCATA 58.140 47.619 13.00 0.00 38.61 3.14
286 287 1.693627 AGCTACTAGTACAGCCGCAT 58.306 50.000 13.00 0.00 38.61 4.73
287 288 1.945394 GTAGCTACTAGTACAGCCGCA 59.055 52.381 16.88 0.00 38.61 5.69
288 289 2.220313 AGTAGCTACTAGTACAGCCGC 58.780 52.381 24.97 8.23 38.61 6.53
289 290 2.807392 GGAGTAGCTACTAGTACAGCCG 59.193 54.545 26.11 0.00 38.61 5.52
290 291 4.089408 AGGAGTAGCTACTAGTACAGCC 57.911 50.000 26.11 19.61 38.61 4.85
291 292 6.015180 TCTCTAGGAGTAGCTACTAGTACAGC 60.015 46.154 26.11 11.69 43.52 4.40
292 293 7.232127 AGTCTCTAGGAGTAGCTACTAGTACAG 59.768 44.444 26.11 17.94 43.52 2.74
293 294 7.068702 AGTCTCTAGGAGTAGCTACTAGTACA 58.931 42.308 26.11 9.80 43.52 2.90
294 295 7.530426 AGTCTCTAGGAGTAGCTACTAGTAC 57.470 44.000 26.11 19.20 43.52 2.73
295 296 7.471819 GCAAGTCTCTAGGAGTAGCTACTAGTA 60.472 44.444 26.11 17.93 43.52 1.82
296 297 6.687139 GCAAGTCTCTAGGAGTAGCTACTAGT 60.687 46.154 26.11 17.77 43.52 2.57
297 298 5.699458 GCAAGTCTCTAGGAGTAGCTACTAG 59.301 48.000 26.11 19.24 44.21 2.57
298 299 5.367352 AGCAAGTCTCTAGGAGTAGCTACTA 59.633 44.000 26.11 10.39 36.50 1.82
299 300 4.165372 AGCAAGTCTCTAGGAGTAGCTACT 59.835 45.833 26.35 26.35 39.71 2.57
300 301 4.457466 AGCAAGTCTCTAGGAGTAGCTAC 58.543 47.826 16.43 16.43 0.00 3.58
301 302 4.781775 AGCAAGTCTCTAGGAGTAGCTA 57.218 45.455 0.00 0.00 0.00 3.32
302 303 3.662759 AGCAAGTCTCTAGGAGTAGCT 57.337 47.619 0.00 0.00 0.00 3.32
303 304 3.697045 TCAAGCAAGTCTCTAGGAGTAGC 59.303 47.826 0.00 0.00 0.00 3.58
304 305 4.201871 CGTCAAGCAAGTCTCTAGGAGTAG 60.202 50.000 0.00 0.00 0.00 2.57
305 306 3.690139 CGTCAAGCAAGTCTCTAGGAGTA 59.310 47.826 0.00 0.00 0.00 2.59
306 307 2.490115 CGTCAAGCAAGTCTCTAGGAGT 59.510 50.000 0.00 0.00 0.00 3.85
307 308 2.159310 CCGTCAAGCAAGTCTCTAGGAG 60.159 54.545 0.00 0.00 0.00 3.69
308 309 1.819288 CCGTCAAGCAAGTCTCTAGGA 59.181 52.381 0.00 0.00 0.00 2.94
309 310 1.134965 CCCGTCAAGCAAGTCTCTAGG 60.135 57.143 0.00 0.00 0.00 3.02
310 311 1.134965 CCCCGTCAAGCAAGTCTCTAG 60.135 57.143 0.00 0.00 0.00 2.43
311 312 0.895530 CCCCGTCAAGCAAGTCTCTA 59.104 55.000 0.00 0.00 0.00 2.43
312 313 1.674057 CCCCGTCAAGCAAGTCTCT 59.326 57.895 0.00 0.00 0.00 3.10
313 314 2.035442 GCCCCGTCAAGCAAGTCTC 61.035 63.158 0.00 0.00 0.00 3.36
314 315 2.032681 GCCCCGTCAAGCAAGTCT 59.967 61.111 0.00 0.00 0.00 3.24
315 316 2.281484 TGCCCCGTCAAGCAAGTC 60.281 61.111 0.00 0.00 35.69 3.01
316 317 2.281761 CTGCCCCGTCAAGCAAGT 60.282 61.111 0.00 0.00 38.82 3.16
317 318 2.281761 ACTGCCCCGTCAAGCAAG 60.282 61.111 0.00 0.00 38.82 4.01
318 319 2.594303 CACTGCCCCGTCAAGCAA 60.594 61.111 0.00 0.00 38.82 3.91
319 320 3.113514 TTCACTGCCCCGTCAAGCA 62.114 57.895 0.00 0.00 37.46 3.91
320 321 2.281484 TTCACTGCCCCGTCAAGC 60.281 61.111 0.00 0.00 0.00 4.01
321 322 1.227823 TGTTCACTGCCCCGTCAAG 60.228 57.895 0.00 0.00 0.00 3.02
322 323 1.227823 CTGTTCACTGCCCCGTCAA 60.228 57.895 0.00 0.00 0.00 3.18
323 324 2.425592 CTGTTCACTGCCCCGTCA 59.574 61.111 0.00 0.00 0.00 4.35
324 325 2.358737 CCTGTTCACTGCCCCGTC 60.359 66.667 0.00 0.00 0.00 4.79
325 326 4.643387 GCCTGTTCACTGCCCCGT 62.643 66.667 0.00 0.00 0.00 5.28
331 332 2.360350 ATGCCGGCCTGTTCACTG 60.360 61.111 26.77 0.00 0.00 3.66
332 333 2.360350 CATGCCGGCCTGTTCACT 60.360 61.111 26.77 0.00 0.00 3.41
333 334 3.443045 CCATGCCGGCCTGTTCAC 61.443 66.667 27.01 0.00 0.00 3.18
334 335 4.738998 CCCATGCCGGCCTGTTCA 62.739 66.667 27.01 7.70 0.00 3.18
346 347 4.415150 AGGACCGCACTGCCCATG 62.415 66.667 0.00 0.00 0.00 3.66
347 348 4.415150 CAGGACCGCACTGCCCAT 62.415 66.667 0.00 0.00 0.00 4.00
352 353 4.335647 AAGGCCAGGACCGCACTG 62.336 66.667 5.01 0.00 35.74 3.66
353 354 4.021925 GAAGGCCAGGACCGCACT 62.022 66.667 5.01 0.00 33.69 4.40
354 355 4.021925 AGAAGGCCAGGACCGCAC 62.022 66.667 5.01 0.00 33.69 5.34
355 356 4.020617 CAGAAGGCCAGGACCGCA 62.021 66.667 5.01 0.00 33.69 5.69
358 359 3.553095 AACGCAGAAGGCCAGGACC 62.553 63.158 5.01 0.00 40.31 4.46
359 360 1.578206 GAAACGCAGAAGGCCAGGAC 61.578 60.000 5.01 0.00 40.31 3.85
360 361 1.302511 GAAACGCAGAAGGCCAGGA 60.303 57.895 5.01 0.00 40.31 3.86
361 362 0.890996 AAGAAACGCAGAAGGCCAGG 60.891 55.000 5.01 0.00 40.31 4.45
362 363 0.519077 GAAGAAACGCAGAAGGCCAG 59.481 55.000 5.01 0.00 40.31 4.85
363 364 0.108585 AGAAGAAACGCAGAAGGCCA 59.891 50.000 5.01 0.00 40.31 5.36
364 365 0.799393 GAGAAGAAACGCAGAAGGCC 59.201 55.000 0.00 0.00 40.31 5.19
365 366 1.802069 AGAGAAGAAACGCAGAAGGC 58.198 50.000 0.00 0.00 39.90 4.35
366 367 3.059325 CACAAGAGAAGAAACGCAGAAGG 60.059 47.826 0.00 0.00 0.00 3.46
367 368 3.557595 ACACAAGAGAAGAAACGCAGAAG 59.442 43.478 0.00 0.00 0.00 2.85
368 369 3.531538 ACACAAGAGAAGAAACGCAGAA 58.468 40.909 0.00 0.00 0.00 3.02
369 370 3.179443 ACACAAGAGAAGAAACGCAGA 57.821 42.857 0.00 0.00 0.00 4.26
370 371 3.063997 ACAACACAAGAGAAGAAACGCAG 59.936 43.478 0.00 0.00 0.00 5.18
371 372 3.006940 ACAACACAAGAGAAGAAACGCA 58.993 40.909 0.00 0.00 0.00 5.24
372 373 3.354397 CACAACACAAGAGAAGAAACGC 58.646 45.455 0.00 0.00 0.00 4.84
373 374 3.181511 TGCACAACACAAGAGAAGAAACG 60.182 43.478 0.00 0.00 0.00 3.60
374 375 4.355543 TGCACAACACAAGAGAAGAAAC 57.644 40.909 0.00 0.00 0.00 2.78
375 376 5.581126 AATGCACAACACAAGAGAAGAAA 57.419 34.783 0.00 0.00 0.00 2.52
376 377 6.691754 TTAATGCACAACACAAGAGAAGAA 57.308 33.333 0.00 0.00 0.00 2.52
377 378 6.347644 CGATTAATGCACAACACAAGAGAAGA 60.348 38.462 0.00 0.00 0.00 2.87
378 379 5.791974 CGATTAATGCACAACACAAGAGAAG 59.208 40.000 0.00 0.00 0.00 2.85
379 380 5.468409 TCGATTAATGCACAACACAAGAGAA 59.532 36.000 0.00 0.00 0.00 2.87
380 381 4.994217 TCGATTAATGCACAACACAAGAGA 59.006 37.500 0.00 0.00 0.00 3.10
381 382 5.281693 TCGATTAATGCACAACACAAGAG 57.718 39.130 0.00 0.00 0.00 2.85
382 383 4.378356 GCTCGATTAATGCACAACACAAGA 60.378 41.667 0.00 0.00 0.00 3.02
383 384 3.848019 GCTCGATTAATGCACAACACAAG 59.152 43.478 0.00 0.00 0.00 3.16
384 385 3.501828 AGCTCGATTAATGCACAACACAA 59.498 39.130 0.00 0.00 0.00 3.33
385 386 3.073678 AGCTCGATTAATGCACAACACA 58.926 40.909 0.00 0.00 0.00 3.72
386 387 3.747099 AGCTCGATTAATGCACAACAC 57.253 42.857 0.00 0.00 0.00 3.32
387 388 4.455533 AGAAAGCTCGATTAATGCACAACA 59.544 37.500 0.00 0.00 0.00 3.33
388 389 4.974591 AGAAAGCTCGATTAATGCACAAC 58.025 39.130 0.00 0.00 0.00 3.32
389 390 4.094887 GGAGAAAGCTCGATTAATGCACAA 59.905 41.667 0.00 0.00 42.25 3.33
390 391 3.623060 GGAGAAAGCTCGATTAATGCACA 59.377 43.478 0.00 0.00 42.25 4.57
391 392 3.873952 AGGAGAAAGCTCGATTAATGCAC 59.126 43.478 0.00 0.00 42.25 4.57
392 393 3.873361 CAGGAGAAAGCTCGATTAATGCA 59.127 43.478 0.00 0.00 42.25 3.96
393 394 3.303659 GCAGGAGAAAGCTCGATTAATGC 60.304 47.826 0.00 0.00 42.25 3.56
394 395 4.125703 AGCAGGAGAAAGCTCGATTAATG 58.874 43.478 0.00 0.00 42.25 1.90
395 396 4.376146 GAGCAGGAGAAAGCTCGATTAAT 58.624 43.478 0.00 0.00 46.53 1.40
396 397 3.786635 GAGCAGGAGAAAGCTCGATTAA 58.213 45.455 0.00 0.00 46.53 1.40
397 398 3.444703 GAGCAGGAGAAAGCTCGATTA 57.555 47.619 0.00 0.00 46.53 1.75
398 399 2.307934 GAGCAGGAGAAAGCTCGATT 57.692 50.000 0.00 0.00 46.53 3.34
403 404 1.954258 GCCAATGAGCAGGAGAAAGCT 60.954 52.381 0.00 0.00 45.25 3.74
404 405 0.455005 GCCAATGAGCAGGAGAAAGC 59.545 55.000 0.00 0.00 0.00 3.51
405 406 1.101331 GGCCAATGAGCAGGAGAAAG 58.899 55.000 0.00 0.00 0.00 2.62
406 407 0.405198 TGGCCAATGAGCAGGAGAAA 59.595 50.000 0.61 0.00 0.00 2.52
407 408 0.627451 ATGGCCAATGAGCAGGAGAA 59.373 50.000 10.96 0.00 0.00 2.87
408 409 0.106868 CATGGCCAATGAGCAGGAGA 60.107 55.000 10.96 0.00 38.72 3.71
409 410 1.107538 CCATGGCCAATGAGCAGGAG 61.108 60.000 10.96 0.00 38.72 3.69
410 411 1.076559 CCATGGCCAATGAGCAGGA 60.077 57.895 10.96 0.00 38.72 3.86
411 412 0.469331 ATCCATGGCCAATGAGCAGG 60.469 55.000 10.96 3.44 38.72 4.85
412 413 0.673985 CATCCATGGCCAATGAGCAG 59.326 55.000 10.96 0.01 38.72 4.24
413 414 0.032912 ACATCCATGGCCAATGAGCA 60.033 50.000 20.37 0.00 38.72 4.26
414 415 0.387929 CACATCCATGGCCAATGAGC 59.612 55.000 20.37 0.00 38.72 4.26
415 416 1.771565 ACACATCCATGGCCAATGAG 58.228 50.000 20.37 15.34 38.72 2.90
416 417 2.241941 AGTACACATCCATGGCCAATGA 59.758 45.455 20.37 15.27 38.72 2.57
417 418 2.359848 CAGTACACATCCATGGCCAATG 59.640 50.000 10.96 12.46 35.89 2.82
418 419 2.658285 CAGTACACATCCATGGCCAAT 58.342 47.619 10.96 0.00 0.00 3.16
419 420 1.340893 CCAGTACACATCCATGGCCAA 60.341 52.381 10.96 0.00 0.00 4.52
420 421 0.255604 CCAGTACACATCCATGGCCA 59.744 55.000 8.56 8.56 0.00 5.36
421 422 3.100545 CCAGTACACATCCATGGCC 57.899 57.895 6.96 0.00 0.00 5.36
423 424 1.671979 CAGCCAGTACACATCCATGG 58.328 55.000 4.97 4.97 0.00 3.66
424 425 1.019673 GCAGCCAGTACACATCCATG 58.980 55.000 0.00 0.00 0.00 3.66
425 426 0.620030 TGCAGCCAGTACACATCCAT 59.380 50.000 0.00 0.00 0.00 3.41
426 427 0.321564 GTGCAGCCAGTACACATCCA 60.322 55.000 0.00 0.00 34.43 3.41
427 428 1.361668 CGTGCAGCCAGTACACATCC 61.362 60.000 0.00 0.00 33.89 3.51
428 429 1.361668 CCGTGCAGCCAGTACACATC 61.362 60.000 0.00 0.00 33.89 3.06
429 430 1.375908 CCGTGCAGCCAGTACACAT 60.376 57.895 0.00 0.00 33.89 3.21
430 431 2.030412 CCGTGCAGCCAGTACACA 59.970 61.111 0.00 0.00 33.89 3.72
431 432 3.423154 GCCGTGCAGCCAGTACAC 61.423 66.667 0.00 0.00 32.52 2.90
432 433 3.625897 AGCCGTGCAGCCAGTACA 61.626 61.111 0.00 0.00 32.52 2.90
433 434 3.121030 CAGCCGTGCAGCCAGTAC 61.121 66.667 0.00 0.00 0.00 2.73
472 473 2.747855 CTGAAGGAGGCAACCGGC 60.748 66.667 0.00 0.00 43.74 6.13
473 474 2.045926 CCTGAAGGAGGCAACCGG 60.046 66.667 0.00 0.00 34.01 5.28
474 475 3.068881 TCCTGAAGGAGGCAACCG 58.931 61.111 0.00 0.00 42.47 4.44
484 485 2.803492 GCCGTGCTATTACCTCCTGAAG 60.803 54.545 0.00 0.00 0.00 3.02
485 486 1.138266 GCCGTGCTATTACCTCCTGAA 59.862 52.381 0.00 0.00 0.00 3.02
511 512 1.067364 CACATGCAAGGCAAGTTCACA 59.933 47.619 0.00 0.00 43.62 3.58
512 513 1.337703 TCACATGCAAGGCAAGTTCAC 59.662 47.619 0.00 0.00 43.62 3.18
533 534 7.043391 GCTTTTGCAAGTTTAAGGACTAAAGTG 60.043 37.037 9.93 0.00 46.58 3.16
609 610 0.034767 CTTGGCTGCTCCTGATTGGA 60.035 55.000 0.00 0.00 43.86 3.53
657 658 2.102578 GGTATCTGCAAAATGGCCAGT 58.897 47.619 13.05 5.37 0.00 4.00
693 695 0.811281 GCGAGGCCAGCAGTTTATTT 59.189 50.000 16.97 0.00 34.19 1.40
694 696 0.035056 AGCGAGGCCAGCAGTTTATT 60.035 50.000 22.53 0.18 37.01 1.40
714 718 2.752358 CTCTGGGTGCAGGCAAGA 59.248 61.111 0.00 0.00 0.00 3.02
823 882 3.760684 GACGGAGAACAAGAACCTACCTA 59.239 47.826 0.00 0.00 0.00 3.08
1140 1223 3.285484 GTCCTCGTTCAGTACATCCCTA 58.715 50.000 0.00 0.00 0.00 3.53
1417 1500 1.950007 CGTCGAGATGGTAGGCGAT 59.050 57.895 0.00 0.00 35.08 4.58
1440 1523 0.963225 TCTGGACGACGAACCATGAA 59.037 50.000 15.79 5.70 35.54 2.57
1618 1701 3.691342 CGCCTCGGTCCACTGGAA 61.691 66.667 0.00 0.00 31.38 3.53
1689 1774 4.764172 ACATCTCTACAAGTTGATCCTGC 58.236 43.478 10.54 0.00 0.00 4.85
1796 1915 0.962356 CGGCCAAGGATTTCAGCAGT 60.962 55.000 2.24 0.00 0.00 4.40
1798 1917 1.074775 ACGGCCAAGGATTTCAGCA 59.925 52.632 2.24 0.00 0.00 4.41
1912 2035 3.279434 GAATGGAATGGCTTTACCGAGT 58.721 45.455 0.00 0.00 43.94 4.18
2034 2195 2.488545 CTCACACCTCTTACGCTACTGT 59.511 50.000 0.00 0.00 0.00 3.55
2038 2199 2.026542 TCCTCTCACACCTCTTACGCTA 60.027 50.000 0.00 0.00 0.00 4.26
2054 2220 0.323816 TGTCGGACAGCTGATCCTCT 60.324 55.000 23.35 0.00 33.70 3.69
2142 2311 2.028484 GGTGACGGTGAGCGACAA 59.972 61.111 12.27 0.00 0.00 3.18
2180 2361 2.649034 TCGGTGGTGCTCGACTTC 59.351 61.111 0.96 0.00 0.00 3.01
2517 2767 2.579787 CTCGTCGTCGCCCATGAC 60.580 66.667 0.00 0.00 37.64 3.06
2527 2777 1.587933 GAAGCTGACCTCCTCGTCGT 61.588 60.000 0.00 0.00 35.40 4.34
2694 2954 3.706600 TTTCAACCCGCAGTATACCTT 57.293 42.857 0.00 0.00 0.00 3.50
2725 2986 2.022718 TTTTGCATTTAGCCCCCTGT 57.977 45.000 0.00 0.00 44.83 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.