Multiple sequence alignment - TraesCS3A01G231000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G231000 chr3A 100.000 7937 0 0 1 7937 431118443 431126379 0.000000e+00 14657.0
1 TraesCS3A01G231000 chr3A 95.312 64 2 1 4877 4939 431123209 431123272 5.070000e-17 100.0
2 TraesCS3A01G231000 chr3A 95.312 64 2 1 4767 4830 431123319 431123381 5.070000e-17 100.0
3 TraesCS3A01G231000 chr3D 90.366 3415 180 57 745 4082 303407681 303404339 0.000000e+00 4346.0
4 TraesCS3A01G231000 chr3D 89.405 840 68 11 5049 5887 303403481 303402662 0.000000e+00 1038.0
5 TraesCS3A01G231000 chr3D 91.691 698 49 4 4079 4767 303404234 303403537 0.000000e+00 959.0
6 TraesCS3A01G231000 chr3D 87.188 601 34 19 187 753 303409483 303408892 1.870000e-180 643.0
7 TraesCS3A01G231000 chr3D 91.641 323 22 2 6749 7071 303401211 303400894 7.310000e-120 442.0
8 TraesCS3A01G231000 chr3D 89.558 249 23 1 5978 6226 303402542 303402297 5.980000e-81 313.0
9 TraesCS3A01G231000 chr3D 93.048 187 12 1 1 187 361793070 361792885 1.010000e-68 272.0
10 TraesCS3A01G231000 chr3D 80.052 386 54 9 7456 7821 303400812 303400430 1.700000e-66 265.0
11 TraesCS3A01G231000 chr3D 97.297 74 1 1 7128 7201 303400890 303400818 3.010000e-24 124.0
12 TraesCS3A01G231000 chr3D 98.039 51 1 0 7081 7131 6459428 6459378 1.100000e-13 89.8
13 TraesCS3A01G231000 chr3D 98.039 51 1 0 7081 7131 563633851 563633801 1.100000e-13 89.8
14 TraesCS3A01G231000 chr3B 97.342 2220 44 12 2553 4767 418057643 418059852 0.000000e+00 3759.0
15 TraesCS3A01G231000 chr3B 92.376 2348 85 32 187 2476 418055337 418057648 0.000000e+00 3258.0
16 TraesCS3A01G231000 chr3B 95.562 1825 70 8 4766 6586 418060014 418061831 0.000000e+00 2911.0
17 TraesCS3A01G231000 chr3B 94.785 326 7 2 6749 7074 418062107 418062422 4.280000e-137 499.0
18 TraesCS3A01G231000 chr3B 94.909 275 14 0 7286 7560 418062501 418062775 1.580000e-116 431.0
19 TraesCS3A01G231000 chr3B 97.000 100 2 1 7125 7224 418062420 418062518 4.930000e-37 167.0
20 TraesCS3A01G231000 chr3B 97.500 80 2 0 6574 6653 418061940 418062019 3.860000e-28 137.0
21 TraesCS3A01G231000 chr3B 97.222 72 2 0 6688 6759 418062020 418062091 1.080000e-23 122.0
22 TraesCS3A01G231000 chr3B 89.286 84 7 2 4767 4848 418060125 418060208 3.920000e-18 104.0
23 TraesCS3A01G231000 chr3B 96.667 60 1 1 4873 4932 418060012 418060070 1.820000e-16 99.0
24 TraesCS3A01G231000 chr3B 94.545 55 3 0 7073 7127 710591093 710591147 1.420000e-12 86.1
25 TraesCS3A01G231000 chr3B 85.000 80 12 0 1817 1896 761295649 761295570 1.840000e-11 82.4
26 TraesCS3A01G231000 chr5A 97.312 186 5 0 1 186 610189037 610189222 4.620000e-82 316.0
27 TraesCS3A01G231000 chr5A 95.722 187 8 0 1 187 400083778 400083592 1.290000e-77 302.0
28 TraesCS3A01G231000 chr2A 96.277 188 7 0 1 188 657111997 657111810 7.740000e-80 309.0
29 TraesCS3A01G231000 chr2A 95.213 188 8 1 1 187 745400564 745400377 6.020000e-76 296.0
30 TraesCS3A01G231000 chr2A 94.643 56 2 1 7081 7136 18632694 18632748 1.420000e-12 86.1
31 TraesCS3A01G231000 chr2A 91.667 60 3 2 7220 7279 297243133 297243190 1.840000e-11 82.4
32 TraesCS3A01G231000 chr7B 95.745 188 8 0 1 188 744916143 744915956 3.600000e-78 303.0
33 TraesCS3A01G231000 chr7B 90.909 66 4 2 7220 7283 677782460 677782525 3.950000e-13 87.9
34 TraesCS3A01G231000 chr7B 93.182 44 2 1 6579 6622 519906724 519906682 6.650000e-06 63.9
35 TraesCS3A01G231000 chr7B 91.111 45 3 1 1852 1896 489773054 489773097 8.600000e-05 60.2
36 TraesCS3A01G231000 chr7A 94.681 188 10 0 1 188 685215056 685214869 7.790000e-75 292.0
37 TraesCS3A01G231000 chr7A 94.652 187 10 0 1 187 544698553 544698739 2.800000e-74 291.0
38 TraesCS3A01G231000 chr7A 91.549 71 6 0 6551 6621 574129388 574129318 1.820000e-16 99.0
39 TraesCS3A01G231000 chr7A 94.643 56 3 0 7081 7136 14632082 14632137 3.950000e-13 87.9
40 TraesCS3A01G231000 chr7A 85.526 76 9 2 7209 7283 62014975 62015049 2.370000e-10 78.7
41 TraesCS3A01G231000 chr4A 94.652 187 10 0 1 187 101954587 101954773 2.800000e-74 291.0
42 TraesCS3A01G231000 chr5B 96.923 65 2 0 6551 6615 163260710 163260646 8.420000e-20 110.0
43 TraesCS3A01G231000 chr5B 89.855 69 7 0 7215 7283 16070688 16070620 1.100000e-13 89.8
44 TraesCS3A01G231000 chr5B 86.301 73 10 0 6551 6623 655296963 655296891 6.600000e-11 80.5
45 TraesCS3A01G231000 chr2B 95.385 65 2 1 7220 7283 794230939 794231003 1.410000e-17 102.0
46 TraesCS3A01G231000 chr2B 90.769 65 6 0 6551 6615 701340299 701340363 3.950000e-13 87.9
47 TraesCS3A01G231000 chr1A 93.939 66 4 0 6551 6616 256814046 256813981 5.070000e-17 100.0
48 TraesCS3A01G231000 chr4D 92.308 65 4 1 7220 7283 452389044 452388980 3.050000e-14 91.6
49 TraesCS3A01G231000 chr4B 100.000 49 0 0 7081 7129 525796105 525796057 3.050000e-14 91.6
50 TraesCS3A01G231000 chr4B 91.667 60 4 1 7221 7280 130235204 130235146 1.840000e-11 82.4
51 TraesCS3A01G231000 chr1B 80.488 123 21 2 1110 1230 666247293 666247172 3.050000e-14 91.6
52 TraesCS3A01G231000 chr2D 98.039 51 1 0 7081 7131 164992730 164992680 1.100000e-13 89.8
53 TraesCS3A01G231000 chr2D 91.803 61 5 0 7220 7280 425758176 425758116 1.420000e-12 86.1
54 TraesCS3A01G231000 chr2D 93.220 59 3 1 7081 7138 627925612 627925670 1.420000e-12 86.1
55 TraesCS3A01G231000 chr2D 88.889 63 7 0 6559 6621 598328281 598328219 2.370000e-10 78.7
56 TraesCS3A01G231000 chr1D 80.870 115 21 1 1116 1230 478347137 478347024 1.100000e-13 89.8
57 TraesCS3A01G231000 chr1D 97.297 37 1 0 6551 6587 202555721 202555685 6.650000e-06 63.9
58 TraesCS3A01G231000 chrUn 85.542 83 12 0 1148 1230 227023274 227023356 3.950000e-13 87.9
59 TraesCS3A01G231000 chrUn 86.765 68 5 3 6551 6618 92137082 92137019 1.100000e-08 73.1
60 TraesCS3A01G231000 chr6A 94.643 56 3 0 7081 7136 535574047 535573992 3.950000e-13 87.9
61 TraesCS3A01G231000 chr6D 91.803 61 4 1 7220 7279 315956140 315956200 5.100000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G231000 chr3A 431118443 431126379 7936 False 4952.333333 14657 96.874667 1 7937 3 chr3A.!!$F1 7936
1 TraesCS3A01G231000 chr3D 303400430 303409483 9053 True 1016.250000 4346 89.649750 187 7821 8 chr3D.!!$R4 7634
2 TraesCS3A01G231000 chr3B 418055337 418062775 7438 False 1148.700000 3759 95.264900 187 7560 10 chr3B.!!$F2 7373

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.032678 AAGCGATGTATCAGGAGGCG 59.967 55.000 0.00 0.00 0.00 5.52 F
129 130 0.110373 GAAACAAACGCCAGCTACGG 60.110 55.000 12.38 0.00 34.00 4.02 F
156 157 0.175073 AGTCGGTGTAATCGGAAGCC 59.825 55.000 0.00 0.00 0.00 4.35 F
840 2104 0.455410 GGATTTGCGGCATGTTGCTA 59.545 50.000 2.28 2.74 44.28 3.49 F
849 2113 1.021390 GCATGTTGCTACGCTCACCT 61.021 55.000 0.00 0.00 40.96 4.00 F
2512 3811 0.325484 CCCCAATGCCCCAGAAATCA 60.325 55.000 0.00 0.00 0.00 2.57 F
3065 4373 1.134521 TGAACGACCACAAAGAGCAGT 60.135 47.619 0.00 0.00 0.00 4.40 F
3967 5292 1.202639 AGATGGCTCGTGTTTGTCACA 60.203 47.619 0.00 0.00 46.44 3.58 F
4967 6595 0.395586 ACCCTTTTGCAGTCACAGCA 60.396 50.000 0.00 0.00 40.85 4.41 F
5856 7485 0.469144 TGTGGGCCTTTCCTTGGTTC 60.469 55.000 4.53 0.00 34.39 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1952 3249 0.337428 AGAATTTGCATGGCCTCCCT 59.663 50.000 3.32 0.00 0.00 4.20 R
2106 3405 5.180271 CAGCGGTAACCTAACCTGAATAAA 58.820 41.667 0.00 0.00 37.39 1.40 R
2211 3510 2.418368 TAGCGCAATCCCTGAAATGT 57.582 45.000 11.47 0.00 0.00 2.71 R
2476 3775 0.395724 GGGTGGGGATGGTTGATGTC 60.396 60.000 0.00 0.00 0.00 3.06 R
2791 4094 1.003118 ACGGAAATCAAGCAGCACCTA 59.997 47.619 0.00 0.00 0.00 3.08 R
4408 5872 2.548057 ACAGTAATTGTGCTTGGTGTCG 59.452 45.455 0.00 0.00 38.99 4.35 R
4955 6583 1.971481 AGTTTGATGCTGTGACTGCA 58.029 45.000 19.17 19.17 42.03 4.41 R
5856 7485 0.179121 TGTCGCCATAACCTAGTGCG 60.179 55.000 0.00 0.00 46.09 5.34 R
6266 7943 0.321996 ACCGAACTCTCCTGCTTTCC 59.678 55.000 0.00 0.00 0.00 3.13 R
7592 9951 0.034186 TATGTGCAAGGAGGCCAAGG 60.034 55.000 5.01 0.00 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.519719 TTGTTTGGTTGGTGCAGCC 59.480 52.632 14.36 5.89 35.26 4.85
19 20 2.027460 GTTTGGTTGGTGCAGCCG 59.973 61.111 14.36 0.00 37.56 5.52
20 21 2.124109 TTTGGTTGGTGCAGCCGA 60.124 55.556 14.36 2.15 37.56 5.54
21 22 2.192861 TTTGGTTGGTGCAGCCGAG 61.193 57.895 14.36 0.00 37.56 4.63
22 23 2.902423 TTTGGTTGGTGCAGCCGAGT 62.902 55.000 14.36 0.00 37.56 4.18
23 24 3.050275 GGTTGGTGCAGCCGAGTC 61.050 66.667 14.36 0.00 41.21 3.36
24 25 3.050275 GTTGGTGCAGCCGAGTCC 61.050 66.667 14.36 0.00 41.21 3.85
25 26 3.241530 TTGGTGCAGCCGAGTCCT 61.242 61.111 14.36 0.00 41.21 3.85
26 27 3.535629 TTGGTGCAGCCGAGTCCTG 62.536 63.158 14.36 0.00 41.21 3.86
27 28 4.008933 GGTGCAGCCGAGTCCTGT 62.009 66.667 4.03 0.00 32.93 4.00
28 29 2.031163 GTGCAGCCGAGTCCTGTT 59.969 61.111 0.00 0.00 32.93 3.16
29 30 1.598130 GTGCAGCCGAGTCCTGTTT 60.598 57.895 0.00 0.00 32.93 2.83
30 31 1.148273 TGCAGCCGAGTCCTGTTTT 59.852 52.632 0.00 0.00 32.93 2.43
31 32 0.465460 TGCAGCCGAGTCCTGTTTTT 60.465 50.000 0.00 0.00 32.93 1.94
50 51 4.717279 TTTTTAATCCCCTCCTATCGGG 57.283 45.455 0.00 0.00 41.59 5.14
51 52 1.652947 TTAATCCCCTCCTATCGGGC 58.347 55.000 0.00 0.00 40.54 6.13
52 53 0.613853 TAATCCCCTCCTATCGGGCG 60.614 60.000 0.00 0.00 40.54 6.13
53 54 3.907027 ATCCCCTCCTATCGGGCGG 62.907 68.421 0.00 0.00 40.54 6.13
54 55 4.936081 CCCCTCCTATCGGGCGGT 62.936 72.222 0.00 0.00 38.26 5.68
55 56 2.842936 CCCTCCTATCGGGCGGTT 60.843 66.667 0.00 0.00 38.26 4.44
56 57 2.440817 CCCTCCTATCGGGCGGTTT 61.441 63.158 0.00 0.00 38.26 3.27
57 58 1.117142 CCCTCCTATCGGGCGGTTTA 61.117 60.000 0.00 0.00 38.26 2.01
58 59 0.317479 CCTCCTATCGGGCGGTTTAG 59.683 60.000 0.00 0.00 35.31 1.85
59 60 0.319641 CTCCTATCGGGCGGTTTAGC 60.320 60.000 0.00 0.00 34.39 3.09
60 61 0.757935 TCCTATCGGGCGGTTTAGCT 60.758 55.000 0.00 0.00 37.29 3.32
61 62 0.106149 CCTATCGGGCGGTTTAGCTT 59.894 55.000 0.00 0.00 37.29 3.74
62 63 1.474498 CCTATCGGGCGGTTTAGCTTT 60.474 52.381 0.00 0.00 37.29 3.51
63 64 2.285977 CTATCGGGCGGTTTAGCTTTT 58.714 47.619 0.00 0.00 37.29 2.27
64 65 1.092348 ATCGGGCGGTTTAGCTTTTC 58.908 50.000 0.00 0.00 37.29 2.29
65 66 0.035739 TCGGGCGGTTTAGCTTTTCT 59.964 50.000 0.00 0.00 37.29 2.52
66 67 0.168128 CGGGCGGTTTAGCTTTTCTG 59.832 55.000 0.00 0.00 37.29 3.02
67 68 1.530323 GGGCGGTTTAGCTTTTCTGA 58.470 50.000 0.00 0.00 37.29 3.27
68 69 1.883926 GGGCGGTTTAGCTTTTCTGAA 59.116 47.619 0.00 0.00 37.29 3.02
69 70 2.095212 GGGCGGTTTAGCTTTTCTGAAG 60.095 50.000 0.00 0.00 37.29 3.02
70 71 2.585845 GCGGTTTAGCTTTTCTGAAGC 58.414 47.619 0.00 2.67 43.31 3.86
79 80 4.864916 GCTTTTCTGAAGCGATGTATCA 57.135 40.909 0.00 0.00 33.20 2.15
80 81 4.830912 GCTTTTCTGAAGCGATGTATCAG 58.169 43.478 0.00 0.00 41.49 2.90
81 82 4.260538 GCTTTTCTGAAGCGATGTATCAGG 60.261 45.833 1.35 0.00 40.71 3.86
82 83 4.736126 TTTCTGAAGCGATGTATCAGGA 57.264 40.909 1.35 0.00 40.71 3.86
83 84 3.998099 TCTGAAGCGATGTATCAGGAG 57.002 47.619 1.35 0.00 40.71 3.69
84 85 2.625314 TCTGAAGCGATGTATCAGGAGG 59.375 50.000 1.35 0.00 40.71 4.30
85 86 1.069204 TGAAGCGATGTATCAGGAGGC 59.931 52.381 0.00 0.00 0.00 4.70
86 87 0.032678 AAGCGATGTATCAGGAGGCG 59.967 55.000 0.00 0.00 0.00 5.52
87 88 2.024319 GCGATGTATCAGGAGGCGC 61.024 63.158 0.00 0.00 36.12 6.53
88 89 1.662608 CGATGTATCAGGAGGCGCT 59.337 57.895 7.64 0.00 0.00 5.92
89 90 0.665670 CGATGTATCAGGAGGCGCTG 60.666 60.000 7.64 0.00 0.00 5.18
90 91 0.948141 GATGTATCAGGAGGCGCTGC 60.948 60.000 7.64 0.00 0.00 5.25
91 92 1.406065 ATGTATCAGGAGGCGCTGCT 61.406 55.000 7.64 0.48 30.68 4.24
92 93 0.755327 TGTATCAGGAGGCGCTGCTA 60.755 55.000 7.64 0.00 29.21 3.49
93 94 0.605589 GTATCAGGAGGCGCTGCTAT 59.394 55.000 7.64 0.00 29.21 2.97
94 95 0.605083 TATCAGGAGGCGCTGCTATG 59.395 55.000 7.64 0.21 29.21 2.23
95 96 1.117749 ATCAGGAGGCGCTGCTATGA 61.118 55.000 7.64 6.34 29.21 2.15
96 97 1.144716 CAGGAGGCGCTGCTATGAA 59.855 57.895 7.64 0.00 29.21 2.57
97 98 0.462581 CAGGAGGCGCTGCTATGAAA 60.463 55.000 7.64 0.00 29.21 2.69
98 99 0.253044 AGGAGGCGCTGCTATGAAAA 59.747 50.000 7.64 0.00 28.27 2.29
99 100 1.094785 GGAGGCGCTGCTATGAAAAA 58.905 50.000 7.64 0.00 0.00 1.94
100 101 1.202188 GGAGGCGCTGCTATGAAAAAC 60.202 52.381 7.64 0.00 0.00 2.43
101 102 0.447801 AGGCGCTGCTATGAAAAACG 59.552 50.000 7.64 0.00 0.00 3.60
102 103 0.168128 GGCGCTGCTATGAAAAACGT 59.832 50.000 7.64 0.00 0.00 3.99
103 104 1.524548 GCGCTGCTATGAAAAACGTC 58.475 50.000 0.00 0.00 0.00 4.34
104 105 1.785881 CGCTGCTATGAAAAACGTCG 58.214 50.000 0.00 0.00 0.00 5.12
105 106 1.126113 CGCTGCTATGAAAAACGTCGT 59.874 47.619 0.00 0.00 0.00 4.34
106 107 2.495939 GCTGCTATGAAAAACGTCGTG 58.504 47.619 0.00 0.00 0.00 4.35
107 108 2.495939 CTGCTATGAAAAACGTCGTGC 58.504 47.619 0.00 0.00 0.00 5.34
109 110 1.510007 CTATGAAAAACGTCGTGCGC 58.490 50.000 0.00 0.00 46.11 6.09
110 111 0.179270 TATGAAAAACGTCGTGCGCG 60.179 50.000 14.79 14.79 46.11 6.86
111 112 1.823260 ATGAAAAACGTCGTGCGCGA 61.823 50.000 20.10 20.10 46.11 5.87
119 120 2.053811 TCGTGCGCGAAACAAACG 60.054 55.556 21.82 9.38 44.92 3.60
127 128 3.361443 CGAAACAAACGCCAGCTAC 57.639 52.632 0.00 0.00 0.00 3.58
128 129 0.450482 CGAAACAAACGCCAGCTACG 60.450 55.000 6.76 6.76 0.00 3.51
129 130 0.110373 GAAACAAACGCCAGCTACGG 60.110 55.000 12.38 0.00 34.00 4.02
130 131 0.816421 AAACAAACGCCAGCTACGGT 60.816 50.000 12.38 3.17 34.00 4.83
131 132 0.816421 AACAAACGCCAGCTACGGTT 60.816 50.000 12.38 9.26 42.09 4.44
132 133 0.816421 ACAAACGCCAGCTACGGTTT 60.816 50.000 8.74 5.75 38.65 3.27
133 134 0.309612 CAAACGCCAGCTACGGTTTT 59.690 50.000 8.74 0.91 38.65 2.43
134 135 0.309612 AAACGCCAGCTACGGTTTTG 59.690 50.000 12.38 0.00 37.05 2.44
135 136 0.533308 AACGCCAGCTACGGTTTTGA 60.533 50.000 12.38 0.00 34.00 2.69
136 137 0.533308 ACGCCAGCTACGGTTTTGAA 60.533 50.000 12.38 0.00 34.00 2.69
137 138 0.589223 CGCCAGCTACGGTTTTGAAA 59.411 50.000 0.48 0.00 0.00 2.69
138 139 1.399727 CGCCAGCTACGGTTTTGAAAG 60.400 52.381 0.48 0.00 0.00 2.62
139 140 1.607148 GCCAGCTACGGTTTTGAAAGT 59.393 47.619 0.00 0.00 0.00 2.66
140 141 2.350484 GCCAGCTACGGTTTTGAAAGTC 60.350 50.000 0.00 0.00 0.00 3.01
141 142 2.096417 CCAGCTACGGTTTTGAAAGTCG 60.096 50.000 0.00 1.59 0.00 4.18
142 143 2.096417 CAGCTACGGTTTTGAAAGTCGG 60.096 50.000 0.00 0.00 0.00 4.79
143 144 1.869132 GCTACGGTTTTGAAAGTCGGT 59.131 47.619 6.85 4.58 0.00 4.69
144 145 2.349155 GCTACGGTTTTGAAAGTCGGTG 60.349 50.000 6.85 1.68 0.00 4.94
145 146 1.741528 ACGGTTTTGAAAGTCGGTGT 58.258 45.000 6.85 0.00 0.00 4.16
146 147 2.903798 ACGGTTTTGAAAGTCGGTGTA 58.096 42.857 6.85 0.00 0.00 2.90
147 148 3.269178 ACGGTTTTGAAAGTCGGTGTAA 58.731 40.909 6.85 0.00 0.00 2.41
148 149 3.878699 ACGGTTTTGAAAGTCGGTGTAAT 59.121 39.130 6.85 0.00 0.00 1.89
149 150 4.024641 ACGGTTTTGAAAGTCGGTGTAATC 60.025 41.667 6.85 0.00 0.00 1.75
150 151 4.460505 GGTTTTGAAAGTCGGTGTAATCG 58.539 43.478 0.00 0.00 0.00 3.34
151 152 4.460505 GTTTTGAAAGTCGGTGTAATCGG 58.539 43.478 0.00 0.00 0.00 4.18
152 153 3.663995 TTGAAAGTCGGTGTAATCGGA 57.336 42.857 0.00 0.00 0.00 4.55
153 154 3.663995 TGAAAGTCGGTGTAATCGGAA 57.336 42.857 0.00 0.00 0.00 4.30
154 155 3.581755 TGAAAGTCGGTGTAATCGGAAG 58.418 45.455 0.00 0.00 0.00 3.46
155 156 2.005971 AAGTCGGTGTAATCGGAAGC 57.994 50.000 0.00 0.00 0.00 3.86
156 157 0.175073 AGTCGGTGTAATCGGAAGCC 59.825 55.000 0.00 0.00 0.00 4.35
166 167 4.038080 CGGAAGCCGCGCCTTTTT 62.038 61.111 2.97 0.00 41.17 1.94
185 186 4.712873 GCGGAACCAAACGCGTCG 62.713 66.667 14.44 11.45 46.58 5.12
278 280 4.514577 CTCACCGGCGCACCCTAG 62.515 72.222 10.83 0.00 0.00 3.02
294 296 1.801309 CTAGAGCCAGCTACGCCTCC 61.801 65.000 0.00 0.00 0.00 4.30
299 301 3.905678 CAGCTACGCCTCCCTCCG 61.906 72.222 0.00 0.00 0.00 4.63
415 417 8.157476 CCAATCATTTTAGCCCATACTAGTACT 58.843 37.037 4.31 0.00 0.00 2.73
420 422 7.592885 TTTTAGCCCATACTAGTACTACCAG 57.407 40.000 4.31 0.00 0.00 4.00
433 435 9.972106 ACTAGTACTACCAGAAAGTATTGTACT 57.028 33.333 0.00 0.00 41.73 2.73
558 561 4.007644 CTCGCTGGGGTGTGAGCA 62.008 66.667 0.00 0.00 37.69 4.26
573 578 3.490759 GCATCCAGCGTCGTGTGG 61.491 66.667 8.95 8.95 34.87 4.17
591 596 1.744522 TGGTGTGCAAATCATCCATCG 59.255 47.619 0.00 0.00 30.60 3.84
594 599 3.376859 GGTGTGCAAATCATCCATCGTTA 59.623 43.478 0.00 0.00 0.00 3.18
627 632 2.014010 TCCTTTTGCTGGCAAAGGAT 57.986 45.000 24.67 0.00 45.15 3.24
638 643 4.649692 CTGGCAAAGGATATATGCTCTGT 58.350 43.478 7.26 0.00 39.94 3.41
640 645 4.349048 TGGCAAAGGATATATGCTCTGTCT 59.651 41.667 12.62 0.00 39.94 3.41
641 646 4.694509 GGCAAAGGATATATGCTCTGTCTG 59.305 45.833 7.26 2.41 39.94 3.51
642 647 5.303971 GCAAAGGATATATGCTCTGTCTGT 58.696 41.667 7.26 0.00 37.12 3.41
643 648 5.178996 GCAAAGGATATATGCTCTGTCTGTG 59.821 44.000 7.26 0.00 37.12 3.66
644 649 6.519382 CAAAGGATATATGCTCTGTCTGTGA 58.481 40.000 7.26 0.00 0.00 3.58
645 650 5.720371 AGGATATATGCTCTGTCTGTGAC 57.280 43.478 0.04 0.00 0.00 3.67
646 651 4.526262 AGGATATATGCTCTGTCTGTGACC 59.474 45.833 0.04 0.00 0.00 4.02
648 653 5.712446 GGATATATGCTCTGTCTGTGACCTA 59.288 44.000 0.00 0.00 0.00 3.08
650 655 7.558081 GGATATATGCTCTGTCTGTGACCTATA 59.442 40.741 0.00 0.00 0.00 1.31
651 656 6.832520 ATATGCTCTGTCTGTGACCTATAG 57.167 41.667 0.00 0.00 0.00 1.31
652 657 3.969553 TGCTCTGTCTGTGACCTATAGT 58.030 45.455 0.00 0.00 0.00 2.12
653 658 5.112129 TGCTCTGTCTGTGACCTATAGTA 57.888 43.478 0.00 0.00 0.00 1.82
654 659 5.126779 TGCTCTGTCTGTGACCTATAGTAG 58.873 45.833 0.00 0.00 0.00 2.57
655 660 4.023536 GCTCTGTCTGTGACCTATAGTAGC 60.024 50.000 0.00 0.00 0.00 3.58
656 661 5.112129 TCTGTCTGTGACCTATAGTAGCA 57.888 43.478 0.00 0.00 0.00 3.49
657 662 4.882427 TCTGTCTGTGACCTATAGTAGCAC 59.118 45.833 0.00 4.73 0.00 4.40
658 663 4.856509 TGTCTGTGACCTATAGTAGCACT 58.143 43.478 14.20 0.00 0.00 4.40
659 664 4.640647 TGTCTGTGACCTATAGTAGCACTG 59.359 45.833 14.20 13.60 0.00 3.66
711 747 2.203294 GGGTCACACCACCACCAC 60.203 66.667 0.00 0.00 41.02 4.16
840 2104 0.455410 GGATTTGCGGCATGTTGCTA 59.545 50.000 2.28 2.74 44.28 3.49
846 2110 2.100031 CGGCATGTTGCTACGCTCA 61.100 57.895 0.00 0.00 44.28 4.26
849 2113 1.021390 GCATGTTGCTACGCTCACCT 61.021 55.000 0.00 0.00 40.96 4.00
1477 2765 3.885297 CTCCACAAGGTTGTTTGATCACT 59.115 43.478 0.00 0.00 39.91 3.41
1630 2920 1.114627 GATTTGGTGATCTTGGCCCC 58.885 55.000 0.00 0.00 0.00 5.80
1693 2987 4.381612 ATCTGCCTTAGAATCGTGTTTCGA 60.382 41.667 0.00 0.00 44.27 3.71
1710 3007 5.968848 TGTTTCGAATCTTTGCTACAACAAC 59.031 36.000 0.00 0.00 0.00 3.32
1798 3095 6.434028 TCTGCTGAAACATAAATAAGCCTGTT 59.566 34.615 0.00 0.00 33.45 3.16
1935 3232 6.268847 TGCGGGGAATATATTAAGGCAATTTT 59.731 34.615 0.00 0.00 0.00 1.82
1989 3286 2.972625 TCTTGCCCTCATTGTAGTTCG 58.027 47.619 0.00 0.00 0.00 3.95
2091 3390 8.641498 ATCACTGTTGATATTTTTCTGTTCCT 57.359 30.769 0.00 0.00 40.96 3.36
2476 3775 2.544267 GAGAACAACCGAGAAACAGGTG 59.456 50.000 0.00 0.00 41.21 4.00
2509 3808 1.229145 CACCCCAATGCCCCAGAAA 60.229 57.895 0.00 0.00 0.00 2.52
2510 3809 0.618393 CACCCCAATGCCCCAGAAAT 60.618 55.000 0.00 0.00 0.00 2.17
2512 3811 0.325484 CCCCAATGCCCCAGAAATCA 60.325 55.000 0.00 0.00 0.00 2.57
2521 3820 3.205056 TGCCCCAGAAATCATTCCTATGT 59.795 43.478 0.00 0.00 36.12 2.29
2522 3821 4.218312 GCCCCAGAAATCATTCCTATGTT 58.782 43.478 0.00 0.00 36.12 2.71
2700 4001 1.721489 CGGCGACTTCATTTGTTGACG 60.721 52.381 0.00 0.00 42.85 4.35
2791 4094 8.086522 GGAATCATAGTTGCTTGCATTGATTAT 58.913 33.333 16.15 1.57 33.72 1.28
2832 4135 8.746052 TCCGTTGAAATCACTCCATATTATTT 57.254 30.769 0.00 0.00 0.00 1.40
3065 4373 1.134521 TGAACGACCACAAAGAGCAGT 60.135 47.619 0.00 0.00 0.00 4.40
3070 4378 3.942748 ACGACCACAAAGAGCAGTTTTTA 59.057 39.130 0.00 0.00 0.00 1.52
3535 4855 6.371809 TCTTGGAGTGTTACACAAATCAAC 57.628 37.500 18.19 0.51 36.74 3.18
3655 4978 2.465813 AGCATCAGAGCTCCTGTAAGT 58.534 47.619 10.93 0.00 42.18 2.24
3670 4993 6.969366 TCCTGTAAGTTGTGATGACATTTTG 58.031 36.000 0.00 0.00 30.13 2.44
3782 5107 9.060347 GGAAGATATTGACTTCAGCATATTTGA 57.940 33.333 0.00 0.00 43.56 2.69
3967 5292 1.202639 AGATGGCTCGTGTTTGTCACA 60.203 47.619 0.00 0.00 46.44 3.58
4282 5744 7.094075 ACTCGACATGGTTCAGTAACAGTAATA 60.094 37.037 0.00 0.00 37.34 0.98
4857 6484 5.643379 TCTAGCCTTCGCATTTCAATTTT 57.357 34.783 0.00 0.00 37.52 1.82
4967 6595 0.395586 ACCCTTTTGCAGTCACAGCA 60.396 50.000 0.00 0.00 40.85 4.41
5008 6636 5.511386 AATGTCATGGTCTTTCCTTCTCT 57.489 39.130 0.00 0.00 37.07 3.10
5109 6737 5.861222 AAAGTTTGCAAAGTTGAAAGGTG 57.139 34.783 28.26 0.00 32.20 4.00
5223 6851 3.964031 TCAAAATACTGGCAAGTTTGGGT 59.036 39.130 0.00 0.00 37.88 4.51
5228 6856 2.247358 ACTGGCAAGTTTGGGTATTGG 58.753 47.619 0.00 0.00 30.14 3.16
5436 7064 4.837860 TGATTGCTCCCTTGTTTAACCAAT 59.162 37.500 0.00 0.00 0.00 3.16
5519 7147 2.750948 TGTAGACGTCCTTCAACAAGC 58.249 47.619 13.01 0.00 0.00 4.01
5856 7485 0.469144 TGTGGGCCTTTCCTTGGTTC 60.469 55.000 4.53 0.00 34.39 3.62
5857 7486 1.228429 TGGGCCTTTCCTTGGTTCG 60.228 57.895 4.53 0.00 34.39 3.95
5896 7527 7.481642 CGACACTGAATCTTACTAGTACCAAT 58.518 38.462 0.91 0.00 0.00 3.16
6047 7724 2.932187 GCCAAGGTTTTGCTTGCCTATG 60.932 50.000 0.00 0.00 32.79 2.23
6078 7755 7.212274 GCCATATTGCCAATTAGAATGAACTT 58.788 34.615 0.00 0.00 0.00 2.66
6203 7880 2.544686 TCGTCACAAACCAAACATACCG 59.455 45.455 0.00 0.00 0.00 4.02
6266 7943 5.655893 AGGTTTTGCGTTTCATTTCATTG 57.344 34.783 0.00 0.00 0.00 2.82
6282 7959 3.679389 TCATTGGAAAGCAGGAGAGTTC 58.321 45.455 0.00 0.00 0.00 3.01
6291 7968 0.179161 CAGGAGAGTTCGGTACAGCG 60.179 60.000 0.00 0.00 0.00 5.18
6323 8001 3.356290 AGGCAAAAGATACATGGTGGTC 58.644 45.455 0.00 0.00 0.00 4.02
6334 8012 4.015872 ACATGGTGGTCGTTTAGTGAAT 57.984 40.909 0.00 0.00 0.00 2.57
6407 8085 0.609406 AAAGGGCGGCTTCCTCTTTC 60.609 55.000 9.56 0.00 32.59 2.62
6410 8088 1.379642 GGGCGGCTTCCTCTTTCATG 61.380 60.000 9.56 0.00 0.00 3.07
6416 8094 0.095935 CTTCCTCTTTCATGCGTGCG 59.904 55.000 0.00 0.00 0.00 5.34
6428 8106 3.487202 CGTGCGATGGTGTTCGGG 61.487 66.667 0.00 0.00 39.49 5.14
6486 8165 3.495806 CCTCTGTTCCAGATAATCCAGGC 60.496 52.174 0.00 0.00 39.92 4.85
6519 8198 2.751837 GGAGGAAAGGCCCTTGCG 60.752 66.667 0.00 0.00 36.49 4.85
6536 8215 4.796495 GTAGCGGCTTGGGGGTGG 62.796 72.222 8.26 0.00 0.00 4.61
6605 8405 5.303078 AGACTGCGACACTTATTATGGATCT 59.697 40.000 0.00 0.00 0.00 2.75
6850 9208 4.924305 ATTTATGCCGATGATGCAACTT 57.076 36.364 0.00 0.00 42.92 2.66
6981 9339 7.539436 CCTTTATCTTTTGCCTTAAACTCCTC 58.461 38.462 0.00 0.00 0.00 3.71
6995 9353 3.708236 ACTCCTCCCCTGCTAGAATTA 57.292 47.619 0.00 0.00 0.00 1.40
7077 9436 1.602377 GCCGTGCCAATATTGTACTCC 59.398 52.381 14.25 3.79 0.00 3.85
7078 9437 2.218603 CCGTGCCAATATTGTACTCCC 58.781 52.381 14.25 0.00 0.00 4.30
7079 9438 2.158813 CCGTGCCAATATTGTACTCCCT 60.159 50.000 14.25 0.00 0.00 4.20
7080 9439 3.131396 CGTGCCAATATTGTACTCCCTC 58.869 50.000 14.25 0.00 0.00 4.30
7081 9440 3.181465 CGTGCCAATATTGTACTCCCTCT 60.181 47.826 14.25 0.00 0.00 3.69
7082 9441 4.038763 CGTGCCAATATTGTACTCCCTCTA 59.961 45.833 14.25 0.00 0.00 2.43
7083 9442 5.542779 GTGCCAATATTGTACTCCCTCTAG 58.457 45.833 14.25 0.00 0.00 2.43
7084 9443 5.070580 GTGCCAATATTGTACTCCCTCTAGT 59.929 44.000 14.25 0.00 0.00 2.57
7085 9444 5.070446 TGCCAATATTGTACTCCCTCTAGTG 59.930 44.000 14.25 0.00 0.00 2.74
7086 9445 5.070580 GCCAATATTGTACTCCCTCTAGTGT 59.929 44.000 14.25 0.00 0.00 3.55
7087 9446 6.267014 GCCAATATTGTACTCCCTCTAGTGTA 59.733 42.308 14.25 0.00 0.00 2.90
7088 9447 7.524038 GCCAATATTGTACTCCCTCTAGTGTAG 60.524 44.444 14.25 0.00 0.00 2.74
7089 9448 7.506261 CCAATATTGTACTCCCTCTAGTGTAGT 59.494 40.741 14.25 0.00 0.00 2.73
7090 9449 8.353684 CAATATTGTACTCCCTCTAGTGTAGTG 58.646 40.741 7.32 0.00 0.00 2.74
7091 9450 4.923516 TGTACTCCCTCTAGTGTAGTGT 57.076 45.455 0.00 1.66 0.00 3.55
7092 9451 4.841422 TGTACTCCCTCTAGTGTAGTGTC 58.159 47.826 0.00 3.03 0.00 3.67
7093 9452 4.287845 TGTACTCCCTCTAGTGTAGTGTCA 59.712 45.833 0.00 4.80 0.00 3.58
7094 9453 4.383931 ACTCCCTCTAGTGTAGTGTCAA 57.616 45.455 0.00 0.00 0.00 3.18
7095 9454 4.737578 ACTCCCTCTAGTGTAGTGTCAAA 58.262 43.478 0.00 0.00 0.00 2.69
7096 9455 5.145564 ACTCCCTCTAGTGTAGTGTCAAAA 58.854 41.667 0.00 0.00 0.00 2.44
7097 9456 5.601313 ACTCCCTCTAGTGTAGTGTCAAAAA 59.399 40.000 0.00 0.00 0.00 1.94
7098 9457 5.850614 TCCCTCTAGTGTAGTGTCAAAAAC 58.149 41.667 0.00 0.00 0.00 2.43
7099 9458 4.684703 CCCTCTAGTGTAGTGTCAAAAACG 59.315 45.833 0.00 0.00 0.00 3.60
7100 9459 4.150098 CCTCTAGTGTAGTGTCAAAAACGC 59.850 45.833 0.00 0.00 38.74 4.84
7102 9461 4.980434 TCTAGTGTAGTGTCAAAAACGCTC 59.020 41.667 0.00 0.00 45.69 5.03
7103 9462 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
7104 9463 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
7105 9464 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
7106 9465 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
7107 9466 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
7108 9467 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
7109 9468 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
7110 9469 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
7113 9472 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
7114 9473 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
7115 9474 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
7116 9475 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
7209 9568 5.251700 AGGGTAGTTCTTCTCAATCACCATT 59.748 40.000 0.00 0.00 0.00 3.16
7210 9569 5.355350 GGGTAGTTCTTCTCAATCACCATTG 59.645 44.000 0.00 0.00 40.91 2.82
7211 9570 6.173339 GGTAGTTCTTCTCAATCACCATTGA 58.827 40.000 0.00 0.00 45.20 2.57
7212 9571 6.825721 GGTAGTTCTTCTCAATCACCATTGAT 59.174 38.462 0.00 0.00 46.01 2.57
7213 9572 6.754702 AGTTCTTCTCAATCACCATTGATG 57.245 37.500 0.00 0.00 46.01 3.07
7214 9573 6.243900 AGTTCTTCTCAATCACCATTGATGT 58.756 36.000 0.00 0.00 46.01 3.06
7215 9574 6.718454 AGTTCTTCTCAATCACCATTGATGTT 59.282 34.615 0.00 0.00 46.01 2.71
7216 9575 6.505044 TCTTCTCAATCACCATTGATGTTG 57.495 37.500 0.00 0.00 46.01 3.33
7217 9576 6.240145 TCTTCTCAATCACCATTGATGTTGA 58.760 36.000 0.00 0.00 46.01 3.18
7218 9577 5.885230 TCTCAATCACCATTGATGTTGAC 57.115 39.130 0.00 0.00 46.01 3.18
7219 9578 5.563592 TCTCAATCACCATTGATGTTGACT 58.436 37.500 0.00 0.00 46.01 3.41
7220 9579 6.710278 TCTCAATCACCATTGATGTTGACTA 58.290 36.000 0.00 0.00 46.01 2.59
7221 9580 7.341030 TCTCAATCACCATTGATGTTGACTAT 58.659 34.615 0.00 0.00 46.01 2.12
7222 9581 7.281549 TCTCAATCACCATTGATGTTGACTATG 59.718 37.037 0.00 0.00 46.01 2.23
7223 9582 6.319405 TCAATCACCATTGATGTTGACTATGG 59.681 38.462 0.00 0.00 42.99 2.74
7224 9583 3.947196 TCACCATTGATGTTGACTATGGC 59.053 43.478 0.00 0.00 41.67 4.40
7225 9584 3.067180 CACCATTGATGTTGACTATGGCC 59.933 47.826 0.00 0.00 41.67 5.36
7226 9585 2.291465 CCATTGATGTTGACTATGGCCG 59.709 50.000 0.00 0.00 34.99 6.13
7227 9586 2.779755 TTGATGTTGACTATGGCCGT 57.220 45.000 1.35 1.35 0.00 5.68
7228 9587 3.897141 TTGATGTTGACTATGGCCGTA 57.103 42.857 4.19 4.19 0.00 4.02
7229 9588 4.415881 TTGATGTTGACTATGGCCGTAT 57.584 40.909 4.80 0.00 0.00 3.06
7230 9589 3.727726 TGATGTTGACTATGGCCGTATG 58.272 45.455 4.80 2.65 0.00 2.39
7231 9590 1.948104 TGTTGACTATGGCCGTATGC 58.052 50.000 4.80 1.21 40.16 3.14
7232 9591 1.208293 TGTTGACTATGGCCGTATGCA 59.792 47.619 4.80 4.01 43.89 3.96
7233 9592 2.158827 TGTTGACTATGGCCGTATGCAT 60.159 45.455 4.80 3.79 43.89 3.96
7234 9593 2.455674 TGACTATGGCCGTATGCATC 57.544 50.000 0.19 2.30 43.89 3.91
7235 9594 1.970640 TGACTATGGCCGTATGCATCT 59.029 47.619 0.19 0.00 43.89 2.90
7236 9595 2.368548 TGACTATGGCCGTATGCATCTT 59.631 45.455 0.19 0.00 43.89 2.40
7237 9596 3.181455 TGACTATGGCCGTATGCATCTTT 60.181 43.478 0.19 0.00 43.89 2.52
7238 9597 3.403038 ACTATGGCCGTATGCATCTTTC 58.597 45.455 0.19 0.00 43.89 2.62
7239 9598 1.229428 ATGGCCGTATGCATCTTTCG 58.771 50.000 0.19 4.52 43.89 3.46
7240 9599 0.813610 TGGCCGTATGCATCTTTCGG 60.814 55.000 20.42 20.42 43.89 4.30
7241 9600 0.531974 GGCCGTATGCATCTTTCGGA 60.532 55.000 25.49 0.00 43.22 4.55
7242 9601 1.512926 GCCGTATGCATCTTTCGGAT 58.487 50.000 25.49 0.00 43.22 4.18
7250 9609 0.942962 CATCTTTCGGATGCAGAGGC 59.057 55.000 0.00 0.00 44.21 4.70
7251 9610 0.179034 ATCTTTCGGATGCAGAGGCC 60.179 55.000 0.00 0.00 40.13 5.19
7252 9611 2.125147 TTTCGGATGCAGAGGCCG 60.125 61.111 12.24 12.24 46.08 6.13
7253 9612 3.680620 TTTCGGATGCAGAGGCCGG 62.681 63.158 16.62 0.00 44.87 6.13
7261 9620 3.866582 CAGAGGCCGGGGGTGATC 61.867 72.222 2.18 0.00 0.00 2.92
7270 9629 4.304432 GGGGTGATCCTCCTCCTC 57.696 66.667 4.44 0.00 35.33 3.71
7271 9630 1.314867 GGGGTGATCCTCCTCCTCA 59.685 63.158 4.44 0.00 35.33 3.86
7272 9631 0.326618 GGGGTGATCCTCCTCCTCAA 60.327 60.000 4.44 0.00 35.33 3.02
7273 9632 1.584724 GGGTGATCCTCCTCCTCAAA 58.415 55.000 4.44 0.00 0.00 2.69
7274 9633 1.916181 GGGTGATCCTCCTCCTCAAAA 59.084 52.381 4.44 0.00 0.00 2.44
7275 9634 2.308866 GGGTGATCCTCCTCCTCAAAAA 59.691 50.000 4.44 0.00 0.00 1.94
7343 9702 2.038295 CCTCTAAGCTCCCTAAGGCATG 59.962 54.545 0.00 0.00 0.00 4.06
7357 9716 5.705441 CCTAAGGCATGTAAGAAGTTGTGAA 59.295 40.000 0.00 0.00 0.00 3.18
7377 9736 1.723608 TTGTGCGCACTCCAGGTTTG 61.724 55.000 37.59 0.00 0.00 2.93
7387 9746 2.021457 CTCCAGGTTTGTTTTCGTGGT 58.979 47.619 0.00 0.00 39.61 4.16
7470 9829 3.049674 TCGCTTGCTTGGGCTTCG 61.050 61.111 0.00 0.00 39.59 3.79
7515 9874 3.408853 GGCACCCCTGGTACTCCC 61.409 72.222 0.00 0.00 32.11 4.30
7547 9906 3.118592 GGCAGAGCAGTAGGAAAGTATGT 60.119 47.826 0.00 0.00 0.00 2.29
7548 9907 4.116238 GCAGAGCAGTAGGAAAGTATGTC 58.884 47.826 0.00 0.00 0.00 3.06
7588 9947 1.671261 CGCTCTCTCCCAAGTCAGTTG 60.671 57.143 0.00 0.00 35.71 3.16
7597 9956 1.609208 CAAGTCAGTTGGTCCCTTGG 58.391 55.000 0.00 0.00 31.82 3.61
7598 9957 0.178990 AAGTCAGTTGGTCCCTTGGC 60.179 55.000 0.00 0.00 0.00 4.52
7614 9984 0.179048 TGGCCTCCTTGCACATATCG 60.179 55.000 3.32 0.00 0.00 2.92
7617 9987 1.599542 GCCTCCTTGCACATATCGAAC 59.400 52.381 0.00 0.00 0.00 3.95
7631 10001 1.192146 TCGAACACCCTCCTCCCTTG 61.192 60.000 0.00 0.00 0.00 3.61
7644 10014 0.036388 TCCCTTGAACGCTAAGGCAG 60.036 55.000 7.27 0.00 42.68 4.85
7651 10021 0.320771 AACGCTAAGGCAGACAGGTG 60.321 55.000 0.00 0.00 38.60 4.00
7655 10025 0.539051 CTAAGGCAGACAGGTGAGGG 59.461 60.000 0.00 0.00 0.00 4.30
7661 10031 1.205893 GCAGACAGGTGAGGGAACTAG 59.794 57.143 0.00 0.00 44.43 2.57
7662 10032 2.808919 CAGACAGGTGAGGGAACTAGA 58.191 52.381 0.00 0.00 44.43 2.43
7663 10033 2.494073 CAGACAGGTGAGGGAACTAGAC 59.506 54.545 0.00 0.00 44.43 2.59
7664 10034 1.473278 GACAGGTGAGGGAACTAGACG 59.527 57.143 0.00 0.00 44.43 4.18
7665 10035 1.203025 ACAGGTGAGGGAACTAGACGT 60.203 52.381 0.00 0.00 44.43 4.34
7673 10043 4.159135 TGAGGGAACTAGACGTAACAATCC 59.841 45.833 0.00 0.00 44.43 3.01
7690 10060 6.377245 ACAATCCCAAATTTCCAACATCAT 57.623 33.333 0.00 0.00 0.00 2.45
7712 10082 0.390860 CACCGGCCATAGAGGAAGAG 59.609 60.000 0.00 0.00 41.22 2.85
7738 10108 0.846427 TTGGGCTTGGAGGGAGATGT 60.846 55.000 0.00 0.00 0.00 3.06
7740 10110 1.452833 GGCTTGGAGGGAGATGTGC 60.453 63.158 0.00 0.00 0.00 4.57
7741 10111 1.606531 GCTTGGAGGGAGATGTGCT 59.393 57.895 0.00 0.00 0.00 4.40
7742 10112 0.034670 GCTTGGAGGGAGATGTGCTT 60.035 55.000 0.00 0.00 0.00 3.91
7744 10114 2.158696 GCTTGGAGGGAGATGTGCTTAT 60.159 50.000 0.00 0.00 0.00 1.73
7760 10130 4.037222 TGCTTATGGACTGGAGGACATTA 58.963 43.478 0.00 0.00 0.00 1.90
7765 10135 2.197465 GGACTGGAGGACATTAGGGTT 58.803 52.381 0.00 0.00 0.00 4.11
7769 10139 2.780010 CTGGAGGACATTAGGGTTGGAT 59.220 50.000 0.00 0.00 0.00 3.41
7773 10143 3.189606 AGGACATTAGGGTTGGATGTGA 58.810 45.455 0.00 0.00 34.38 3.58
7777 10147 5.041191 ACATTAGGGTTGGATGTGAGATC 57.959 43.478 0.00 0.00 33.08 2.75
7778 10148 4.723789 ACATTAGGGTTGGATGTGAGATCT 59.276 41.667 0.00 0.00 33.08 2.75
7827 10205 2.086054 AGCGAAGGTCAAAGCTGTAG 57.914 50.000 0.00 0.00 38.67 2.74
7828 10206 0.444260 GCGAAGGTCAAAGCTGTAGC 59.556 55.000 0.00 0.00 42.49 3.58
7829 10207 1.079503 CGAAGGTCAAAGCTGTAGCC 58.920 55.000 0.00 0.00 43.38 3.93
7830 10208 1.079503 GAAGGTCAAAGCTGTAGCCG 58.920 55.000 0.00 0.00 43.38 5.52
7831 10209 0.396811 AAGGTCAAAGCTGTAGCCGT 59.603 50.000 0.00 0.00 43.38 5.68
7832 10210 0.320771 AGGTCAAAGCTGTAGCCGTG 60.321 55.000 0.00 0.00 43.38 4.94
7833 10211 1.298859 GGTCAAAGCTGTAGCCGTGG 61.299 60.000 0.00 0.00 43.38 4.94
7834 10212 0.320421 GTCAAAGCTGTAGCCGTGGA 60.320 55.000 0.00 0.00 43.38 4.02
7835 10213 0.320421 TCAAAGCTGTAGCCGTGGAC 60.320 55.000 0.00 0.00 43.38 4.02
7836 10214 0.602638 CAAAGCTGTAGCCGTGGACA 60.603 55.000 0.00 0.00 43.38 4.02
7837 10215 0.602905 AAAGCTGTAGCCGTGGACAC 60.603 55.000 0.00 0.00 43.38 3.67
7838 10216 2.434359 GCTGTAGCCGTGGACACC 60.434 66.667 0.00 0.00 34.31 4.16
7839 10217 2.126071 CTGTAGCCGTGGACACCG 60.126 66.667 0.00 0.00 0.00 4.94
7853 10231 2.828868 ACCGGCAGTGAGCTTCAA 59.171 55.556 0.00 0.00 44.79 2.69
7854 10232 1.598130 ACCGGCAGTGAGCTTCAAC 60.598 57.895 0.00 0.00 44.79 3.18
7855 10233 2.671177 CCGGCAGTGAGCTTCAACG 61.671 63.158 0.00 0.00 44.79 4.10
7856 10234 1.956170 CGGCAGTGAGCTTCAACGT 60.956 57.895 0.00 0.00 44.79 3.99
7857 10235 1.571460 GGCAGTGAGCTTCAACGTG 59.429 57.895 0.00 0.00 44.79 4.49
7858 10236 0.880278 GGCAGTGAGCTTCAACGTGA 60.880 55.000 0.00 0.00 44.79 4.35
7859 10237 0.233332 GCAGTGAGCTTCAACGTGAC 59.767 55.000 0.00 0.00 41.15 3.67
7860 10238 0.861837 CAGTGAGCTTCAACGTGACC 59.138 55.000 0.00 0.00 0.00 4.02
7861 10239 0.464036 AGTGAGCTTCAACGTGACCA 59.536 50.000 0.00 0.00 0.00 4.02
7862 10240 1.070758 AGTGAGCTTCAACGTGACCAT 59.929 47.619 0.00 0.00 0.00 3.55
7863 10241 1.873591 GTGAGCTTCAACGTGACCATT 59.126 47.619 0.00 0.00 0.00 3.16
7864 10242 3.064207 GTGAGCTTCAACGTGACCATTA 58.936 45.455 0.00 0.00 0.00 1.90
7865 10243 3.064207 TGAGCTTCAACGTGACCATTAC 58.936 45.455 0.00 0.00 0.00 1.89
7866 10244 3.064207 GAGCTTCAACGTGACCATTACA 58.936 45.455 0.00 0.00 0.00 2.41
7867 10245 3.674997 AGCTTCAACGTGACCATTACAT 58.325 40.909 0.00 0.00 0.00 2.29
7868 10246 3.684788 AGCTTCAACGTGACCATTACATC 59.315 43.478 0.00 0.00 0.00 3.06
7869 10247 3.483574 GCTTCAACGTGACCATTACATCG 60.484 47.826 0.00 0.00 0.00 3.84
7870 10248 3.579335 TCAACGTGACCATTACATCGA 57.421 42.857 0.00 0.00 0.00 3.59
7871 10249 3.247442 TCAACGTGACCATTACATCGAC 58.753 45.455 0.00 0.00 0.00 4.20
7872 10250 1.904144 ACGTGACCATTACATCGACG 58.096 50.000 0.00 0.00 0.00 5.12
7873 10251 1.200716 ACGTGACCATTACATCGACGT 59.799 47.619 0.00 0.00 0.00 4.34
7874 10252 2.256174 CGTGACCATTACATCGACGTT 58.744 47.619 0.00 0.00 0.00 3.99
7875 10253 2.027569 CGTGACCATTACATCGACGTTG 59.972 50.000 4.39 4.39 0.00 4.10
7876 10254 1.996898 TGACCATTACATCGACGTTGC 59.003 47.619 5.84 0.00 0.00 4.17
7877 10255 1.326548 GACCATTACATCGACGTTGCC 59.673 52.381 5.84 0.00 0.00 4.52
7878 10256 1.066430 ACCATTACATCGACGTTGCCT 60.066 47.619 5.84 0.00 0.00 4.75
7879 10257 2.006888 CCATTACATCGACGTTGCCTT 58.993 47.619 5.84 0.00 0.00 4.35
7880 10258 2.030457 CCATTACATCGACGTTGCCTTC 59.970 50.000 5.84 0.00 0.00 3.46
7881 10259 1.342555 TTACATCGACGTTGCCTTCG 58.657 50.000 5.84 0.00 36.55 3.79
7882 10260 0.241749 TACATCGACGTTGCCTTCGT 59.758 50.000 5.84 0.00 44.27 3.85
7883 10261 1.282248 ACATCGACGTTGCCTTCGTG 61.282 55.000 5.84 0.00 41.64 4.35
7884 10262 1.006571 ATCGACGTTGCCTTCGTGT 60.007 52.632 0.00 0.00 41.64 4.49
7885 10263 0.599204 ATCGACGTTGCCTTCGTGTT 60.599 50.000 0.00 0.00 41.64 3.32
7886 10264 0.806884 TCGACGTTGCCTTCGTGTTT 60.807 50.000 0.00 0.00 41.64 2.83
7887 10265 0.653323 CGACGTTGCCTTCGTGTTTG 60.653 55.000 0.00 0.00 41.64 2.93
7888 10266 0.375803 GACGTTGCCTTCGTGTTTGT 59.624 50.000 0.00 0.00 41.64 2.83
7889 10267 0.098025 ACGTTGCCTTCGTGTTTGTG 59.902 50.000 0.00 0.00 40.07 3.33
7890 10268 0.098025 CGTTGCCTTCGTGTTTGTGT 59.902 50.000 0.00 0.00 0.00 3.72
7891 10269 1.544686 GTTGCCTTCGTGTTTGTGTG 58.455 50.000 0.00 0.00 0.00 3.82
7892 10270 0.179150 TTGCCTTCGTGTTTGTGTGC 60.179 50.000 0.00 0.00 0.00 4.57
7893 10271 1.299089 GCCTTCGTGTTTGTGTGCC 60.299 57.895 0.00 0.00 0.00 5.01
7894 10272 1.724582 GCCTTCGTGTTTGTGTGCCT 61.725 55.000 0.00 0.00 0.00 4.75
7895 10273 0.307760 CCTTCGTGTTTGTGTGCCTC 59.692 55.000 0.00 0.00 0.00 4.70
7896 10274 0.307760 CTTCGTGTTTGTGTGCCTCC 59.692 55.000 0.00 0.00 0.00 4.30
7897 10275 1.433053 TTCGTGTTTGTGTGCCTCCG 61.433 55.000 0.00 0.00 0.00 4.63
7898 10276 2.892334 CGTGTTTGTGTGCCTCCGG 61.892 63.158 0.00 0.00 0.00 5.14
7909 10287 2.687566 CCTCCGGCTAGTGGGGTT 60.688 66.667 0.00 0.00 0.00 4.11
7910 10288 1.382146 CCTCCGGCTAGTGGGGTTA 60.382 63.158 0.00 0.00 0.00 2.85
7911 10289 1.400530 CCTCCGGCTAGTGGGGTTAG 61.401 65.000 0.00 0.00 0.00 2.34
7912 10290 0.396695 CTCCGGCTAGTGGGGTTAGA 60.397 60.000 0.00 0.00 0.00 2.10
7913 10291 0.396695 TCCGGCTAGTGGGGTTAGAG 60.397 60.000 0.00 0.00 0.00 2.43
7914 10292 0.396695 CCGGCTAGTGGGGTTAGAGA 60.397 60.000 0.00 0.00 0.00 3.10
7915 10293 1.705873 CGGCTAGTGGGGTTAGAGAT 58.294 55.000 0.00 0.00 0.00 2.75
7916 10294 1.614413 CGGCTAGTGGGGTTAGAGATC 59.386 57.143 0.00 0.00 0.00 2.75
7917 10295 1.972075 GGCTAGTGGGGTTAGAGATCC 59.028 57.143 0.00 0.00 0.00 3.36
7918 10296 2.679082 GCTAGTGGGGTTAGAGATCCA 58.321 52.381 0.00 0.00 0.00 3.41
7919 10297 2.630580 GCTAGTGGGGTTAGAGATCCAG 59.369 54.545 0.00 0.00 0.00 3.86
7920 10298 3.691603 GCTAGTGGGGTTAGAGATCCAGA 60.692 52.174 0.00 0.00 0.00 3.86
7921 10299 3.491766 AGTGGGGTTAGAGATCCAGAA 57.508 47.619 0.00 0.00 0.00 3.02
7922 10300 3.379452 AGTGGGGTTAGAGATCCAGAAG 58.621 50.000 0.00 0.00 0.00 2.85
7923 10301 2.436173 GTGGGGTTAGAGATCCAGAAGG 59.564 54.545 0.00 0.00 0.00 3.46
7924 10302 2.045885 TGGGGTTAGAGATCCAGAAGGT 59.954 50.000 0.00 0.00 35.89 3.50
7925 10303 3.116174 GGGGTTAGAGATCCAGAAGGTT 58.884 50.000 0.00 0.00 35.89 3.50
7926 10304 3.523972 GGGGTTAGAGATCCAGAAGGTTT 59.476 47.826 0.00 0.00 35.89 3.27
7927 10305 4.518249 GGGTTAGAGATCCAGAAGGTTTG 58.482 47.826 0.00 0.00 35.89 2.93
7928 10306 4.518249 GGTTAGAGATCCAGAAGGTTTGG 58.482 47.826 0.00 0.00 37.04 3.28
7929 10307 4.518249 GTTAGAGATCCAGAAGGTTTGGG 58.482 47.826 0.00 0.00 36.34 4.12
7930 10308 1.283321 AGAGATCCAGAAGGTTTGGGC 59.717 52.381 0.00 0.00 36.34 5.36
7931 10309 0.332972 AGATCCAGAAGGTTTGGGCC 59.667 55.000 0.00 0.00 36.34 5.80
7932 10310 0.332972 GATCCAGAAGGTTTGGGCCT 59.667 55.000 4.53 0.00 41.41 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.519719 GGCTGCACCAACCAAACAA 59.480 52.632 0.50 0.00 38.86 2.83
1 2 2.780094 CGGCTGCACCAACCAAACA 61.780 57.895 0.50 0.00 39.03 2.83
2 3 2.027460 CGGCTGCACCAACCAAAC 59.973 61.111 0.50 0.00 39.03 2.93
3 4 2.124109 TCGGCTGCACCAACCAAA 60.124 55.556 0.50 0.00 39.03 3.28
4 5 2.594303 CTCGGCTGCACCAACCAA 60.594 61.111 0.50 0.00 39.03 3.67
5 6 3.825160 GACTCGGCTGCACCAACCA 62.825 63.158 0.50 0.00 39.03 3.67
6 7 3.050275 GACTCGGCTGCACCAACC 61.050 66.667 0.50 0.00 39.03 3.77
7 8 3.050275 GGACTCGGCTGCACCAAC 61.050 66.667 0.50 0.00 39.03 3.77
8 9 3.241530 AGGACTCGGCTGCACCAA 61.242 61.111 0.50 0.00 39.03 3.67
9 10 4.007644 CAGGACTCGGCTGCACCA 62.008 66.667 0.50 0.00 39.03 4.17
10 11 3.537206 AACAGGACTCGGCTGCACC 62.537 63.158 0.50 0.00 0.00 5.01
11 12 1.166531 AAAACAGGACTCGGCTGCAC 61.167 55.000 0.50 0.00 0.00 4.57
12 13 0.465460 AAAAACAGGACTCGGCTGCA 60.465 50.000 0.50 0.00 0.00 4.41
13 14 2.331265 AAAAACAGGACTCGGCTGC 58.669 52.632 0.00 0.00 0.00 5.25
43 44 1.949465 AAAGCTAAACCGCCCGATAG 58.051 50.000 0.00 0.00 0.00 2.08
44 45 2.093341 AGAAAAGCTAAACCGCCCGATA 60.093 45.455 0.00 0.00 0.00 2.92
45 46 1.092348 GAAAAGCTAAACCGCCCGAT 58.908 50.000 0.00 0.00 0.00 4.18
46 47 0.035739 AGAAAAGCTAAACCGCCCGA 59.964 50.000 0.00 0.00 0.00 5.14
47 48 0.168128 CAGAAAAGCTAAACCGCCCG 59.832 55.000 0.00 0.00 0.00 6.13
48 49 1.530323 TCAGAAAAGCTAAACCGCCC 58.470 50.000 0.00 0.00 0.00 6.13
49 50 2.668556 GCTTCAGAAAAGCTAAACCGCC 60.669 50.000 2.61 0.00 40.01 6.13
50 51 2.585845 GCTTCAGAAAAGCTAAACCGC 58.414 47.619 2.61 0.00 40.01 5.68
51 52 2.478894 TCGCTTCAGAAAAGCTAAACCG 59.521 45.455 8.03 0.00 40.94 4.44
52 53 4.083271 ACATCGCTTCAGAAAAGCTAAACC 60.083 41.667 8.03 0.00 40.94 3.27
53 54 5.035784 ACATCGCTTCAGAAAAGCTAAAC 57.964 39.130 8.03 0.00 40.94 2.01
54 55 6.593770 TGATACATCGCTTCAGAAAAGCTAAA 59.406 34.615 8.03 0.00 40.94 1.85
55 56 6.106003 TGATACATCGCTTCAGAAAAGCTAA 58.894 36.000 8.03 0.00 40.94 3.09
56 57 5.660460 TGATACATCGCTTCAGAAAAGCTA 58.340 37.500 8.03 0.00 40.94 3.32
57 58 4.507710 TGATACATCGCTTCAGAAAAGCT 58.492 39.130 8.03 0.00 40.94 3.74
58 59 4.260538 CCTGATACATCGCTTCAGAAAAGC 60.261 45.833 0.90 0.00 39.36 3.51
59 60 5.111989 TCCTGATACATCGCTTCAGAAAAG 58.888 41.667 0.90 0.00 39.36 2.27
60 61 5.084818 TCCTGATACATCGCTTCAGAAAA 57.915 39.130 0.90 0.00 39.36 2.29
61 62 4.442052 CCTCCTGATACATCGCTTCAGAAA 60.442 45.833 0.90 0.00 39.36 2.52
62 63 3.068732 CCTCCTGATACATCGCTTCAGAA 59.931 47.826 0.90 0.00 39.36 3.02
63 64 2.625314 CCTCCTGATACATCGCTTCAGA 59.375 50.000 0.90 0.00 39.36 3.27
64 65 2.865670 GCCTCCTGATACATCGCTTCAG 60.866 54.545 0.00 0.00 37.27 3.02
65 66 1.069204 GCCTCCTGATACATCGCTTCA 59.931 52.381 0.00 0.00 0.00 3.02
66 67 1.789506 GCCTCCTGATACATCGCTTC 58.210 55.000 0.00 0.00 0.00 3.86
67 68 0.032678 CGCCTCCTGATACATCGCTT 59.967 55.000 0.00 0.00 0.00 4.68
68 69 1.662608 CGCCTCCTGATACATCGCT 59.337 57.895 0.00 0.00 0.00 4.93
69 70 2.024319 GCGCCTCCTGATACATCGC 61.024 63.158 0.00 0.00 0.00 4.58
70 71 0.665670 CAGCGCCTCCTGATACATCG 60.666 60.000 2.29 0.00 34.77 3.84
71 72 0.948141 GCAGCGCCTCCTGATACATC 60.948 60.000 2.29 0.00 34.77 3.06
72 73 1.070445 GCAGCGCCTCCTGATACAT 59.930 57.895 2.29 0.00 34.77 2.29
73 74 0.755327 TAGCAGCGCCTCCTGATACA 60.755 55.000 2.29 0.00 34.77 2.29
74 75 0.605589 ATAGCAGCGCCTCCTGATAC 59.394 55.000 2.29 0.00 36.64 2.24
75 76 0.605083 CATAGCAGCGCCTCCTGATA 59.395 55.000 2.29 0.00 38.00 2.15
76 77 1.117749 TCATAGCAGCGCCTCCTGAT 61.118 55.000 2.29 0.00 34.77 2.90
77 78 1.329913 TTCATAGCAGCGCCTCCTGA 61.330 55.000 2.29 0.00 34.77 3.86
78 79 0.462581 TTTCATAGCAGCGCCTCCTG 60.463 55.000 2.29 0.00 35.93 3.86
79 80 0.253044 TTTTCATAGCAGCGCCTCCT 59.747 50.000 2.29 0.00 0.00 3.69
80 81 1.094785 TTTTTCATAGCAGCGCCTCC 58.905 50.000 2.29 0.00 0.00 4.30
81 82 1.529826 CGTTTTTCATAGCAGCGCCTC 60.530 52.381 2.29 0.00 0.00 4.70
82 83 0.447801 CGTTTTTCATAGCAGCGCCT 59.552 50.000 2.29 0.00 0.00 5.52
83 84 0.168128 ACGTTTTTCATAGCAGCGCC 59.832 50.000 2.29 0.00 0.00 6.53
84 85 1.524548 GACGTTTTTCATAGCAGCGC 58.475 50.000 0.00 0.00 0.00 5.92
85 86 1.126113 ACGACGTTTTTCATAGCAGCG 59.874 47.619 0.00 0.00 0.00 5.18
86 87 2.495939 CACGACGTTTTTCATAGCAGC 58.504 47.619 0.00 0.00 0.00 5.25
87 88 2.495939 GCACGACGTTTTTCATAGCAG 58.504 47.619 0.00 0.00 0.00 4.24
88 89 1.136474 CGCACGACGTTTTTCATAGCA 60.136 47.619 0.00 0.00 36.87 3.49
89 90 1.510007 CGCACGACGTTTTTCATAGC 58.490 50.000 0.00 0.00 36.87 2.97
90 91 1.510007 GCGCACGACGTTTTTCATAG 58.490 50.000 0.30 0.00 46.11 2.23
91 92 0.179270 CGCGCACGACGTTTTTCATA 60.179 50.000 8.75 0.00 46.11 2.15
92 93 1.438059 CGCGCACGACGTTTTTCAT 60.438 52.632 8.75 0.00 46.11 2.57
93 94 2.053811 CGCGCACGACGTTTTTCA 60.054 55.556 8.75 0.00 46.11 2.69
94 95 2.243240 TCGCGCACGACGTTTTTC 59.757 55.556 8.75 0.00 45.12 2.29
109 110 0.450482 CGTAGCTGGCGTTTGTTTCG 60.450 55.000 0.00 0.00 0.00 3.46
110 111 0.110373 CCGTAGCTGGCGTTTGTTTC 60.110 55.000 0.00 0.00 0.00 2.78
111 112 0.816421 ACCGTAGCTGGCGTTTGTTT 60.816 50.000 0.00 0.00 0.00 2.83
112 113 0.816421 AACCGTAGCTGGCGTTTGTT 60.816 50.000 0.00 0.00 0.00 2.83
113 114 0.816421 AAACCGTAGCTGGCGTTTGT 60.816 50.000 0.00 0.00 0.00 2.83
114 115 0.309612 AAAACCGTAGCTGGCGTTTG 59.690 50.000 0.00 0.00 0.00 2.93
115 116 0.309612 CAAAACCGTAGCTGGCGTTT 59.690 50.000 0.00 0.00 0.00 3.60
116 117 0.533308 TCAAAACCGTAGCTGGCGTT 60.533 50.000 0.00 0.00 0.00 4.84
117 118 0.533308 TTCAAAACCGTAGCTGGCGT 60.533 50.000 0.00 0.00 0.00 5.68
118 119 0.589223 TTTCAAAACCGTAGCTGGCG 59.411 50.000 0.00 0.19 0.00 5.69
119 120 1.607148 ACTTTCAAAACCGTAGCTGGC 59.393 47.619 0.00 0.00 0.00 4.85
120 121 2.096417 CGACTTTCAAAACCGTAGCTGG 60.096 50.000 0.00 0.00 0.00 4.85
121 122 2.096417 CCGACTTTCAAAACCGTAGCTG 60.096 50.000 0.00 0.00 0.00 4.24
122 123 2.140717 CCGACTTTCAAAACCGTAGCT 58.859 47.619 0.00 0.00 0.00 3.32
123 124 1.869132 ACCGACTTTCAAAACCGTAGC 59.131 47.619 0.00 0.00 0.00 3.58
124 125 2.867975 ACACCGACTTTCAAAACCGTAG 59.132 45.455 0.00 0.00 0.00 3.51
125 126 2.903798 ACACCGACTTTCAAAACCGTA 58.096 42.857 0.00 0.00 0.00 4.02
126 127 1.741528 ACACCGACTTTCAAAACCGT 58.258 45.000 0.00 0.00 0.00 4.83
127 128 3.948196 TTACACCGACTTTCAAAACCG 57.052 42.857 0.00 0.00 0.00 4.44
128 129 4.460505 CGATTACACCGACTTTCAAAACC 58.539 43.478 0.00 0.00 0.00 3.27
129 130 4.211794 TCCGATTACACCGACTTTCAAAAC 59.788 41.667 0.00 0.00 0.00 2.43
130 131 4.378774 TCCGATTACACCGACTTTCAAAA 58.621 39.130 0.00 0.00 0.00 2.44
131 132 3.992643 TCCGATTACACCGACTTTCAAA 58.007 40.909 0.00 0.00 0.00 2.69
132 133 3.663995 TCCGATTACACCGACTTTCAA 57.336 42.857 0.00 0.00 0.00 2.69
133 134 3.581755 CTTCCGATTACACCGACTTTCA 58.418 45.455 0.00 0.00 0.00 2.69
134 135 2.347755 GCTTCCGATTACACCGACTTTC 59.652 50.000 0.00 0.00 0.00 2.62
135 136 2.344025 GCTTCCGATTACACCGACTTT 58.656 47.619 0.00 0.00 0.00 2.66
136 137 1.405121 GGCTTCCGATTACACCGACTT 60.405 52.381 0.00 0.00 0.00 3.01
137 138 0.175073 GGCTTCCGATTACACCGACT 59.825 55.000 0.00 0.00 0.00 4.18
138 139 2.674296 GGCTTCCGATTACACCGAC 58.326 57.895 0.00 0.00 0.00 4.79
168 169 4.712873 CGACGCGTTTGGTTCCGC 62.713 66.667 15.53 0.00 46.10 5.54
169 170 3.332409 ACGACGCGTTTGGTTCCG 61.332 61.111 15.53 13.35 36.35 4.30
178 179 0.940991 GTTAGAACCCAACGACGCGT 60.941 55.000 13.85 13.85 43.97 6.01
179 180 1.777199 GTTAGAACCCAACGACGCG 59.223 57.895 3.53 3.53 0.00 6.01
185 186 1.864176 CCACGCGTTAGAACCCAAC 59.136 57.895 10.22 0.00 0.00 3.77
294 296 2.317609 CGTTTGTGGTCTGCGGAGG 61.318 63.158 3.37 0.00 0.00 4.30
299 301 0.235926 GAGCTTCGTTTGTGGTCTGC 59.764 55.000 0.00 0.00 0.00 4.26
306 308 3.654414 CAGGTTCTAGAGCTTCGTTTGT 58.346 45.455 6.54 0.00 32.70 2.83
444 446 5.648526 CGAGAGTATGTACTACCTATGGCAT 59.351 44.000 4.88 4.88 36.50 4.40
446 448 5.002516 ACGAGAGTATGTACTACCTATGGC 58.997 45.833 0.00 0.00 46.88 4.40
518 521 7.804129 CGAGGAAATCTCTTCCGTTATTAGTAG 59.196 40.741 0.00 0.00 43.23 2.57
519 522 7.646314 CGAGGAAATCTCTTCCGTTATTAGTA 58.354 38.462 0.00 0.00 43.23 1.82
520 523 6.505272 CGAGGAAATCTCTTCCGTTATTAGT 58.495 40.000 0.00 0.00 43.23 2.24
558 561 2.048222 CACCACACGACGCTGGAT 60.048 61.111 16.94 1.55 0.00 3.41
573 578 3.492421 AACGATGGATGATTTGCACAC 57.508 42.857 0.00 0.00 0.00 3.82
591 596 3.180891 AGGATGCGTAGAAGGCTTAAC 57.819 47.619 0.00 0.49 0.00 2.01
594 599 2.749621 CAAAAGGATGCGTAGAAGGCTT 59.250 45.455 0.00 0.00 0.00 4.35
627 632 7.462590 ACTATAGGTCACAGACAGAGCATATA 58.537 38.462 4.43 0.00 36.03 0.86
638 643 3.632604 GCAGTGCTACTATAGGTCACAGA 59.367 47.826 8.18 0.00 0.00 3.41
640 645 3.632333 AGCAGTGCTACTATAGGTCACA 58.368 45.455 18.11 4.26 36.99 3.58
652 657 2.118313 TACTCGTGGTAGCAGTGCTA 57.882 50.000 21.00 21.00 40.44 3.49
653 658 1.254026 TTACTCGTGGTAGCAGTGCT 58.746 50.000 23.44 23.44 43.41 4.40
654 659 2.074547 TTTACTCGTGGTAGCAGTGC 57.925 50.000 7.13 7.13 0.00 4.40
655 660 6.903883 AATTATTTACTCGTGGTAGCAGTG 57.096 37.500 0.00 0.00 0.00 3.66
656 661 7.916914 AAAATTATTTACTCGTGGTAGCAGT 57.083 32.000 0.00 0.00 0.00 4.40
657 662 7.634817 CGAAAAATTATTTACTCGTGGTAGCAG 59.365 37.037 11.53 0.00 0.00 4.24
658 663 7.331440 TCGAAAAATTATTTACTCGTGGTAGCA 59.669 33.333 16.34 0.00 32.84 3.49
659 664 7.678226 TCGAAAAATTATTTACTCGTGGTAGC 58.322 34.615 16.34 0.00 32.84 3.58
765 2023 4.404654 CGGACTTTTGCGGGCTGC 62.405 66.667 12.43 12.43 46.70 5.25
883 2147 0.977395 CCTAAATAGGAGGAGGCGGG 59.023 60.000 0.00 0.00 46.63 6.13
921 2209 2.281208 TTGGTGCGGAAGAACGGG 60.281 61.111 0.00 0.00 42.08 5.28
924 2212 0.599204 TCGAGTTGGTGCGGAAGAAC 60.599 55.000 0.00 0.00 39.66 3.01
1236 2524 2.633488 GAGTAGCCAGCGAGGAATTTT 58.367 47.619 2.12 0.00 41.22 1.82
1477 2765 1.452110 CATGTCCCTCACGCAATTGA 58.548 50.000 10.34 0.00 0.00 2.57
1597 2887 4.020573 TCACCAAATCAAGACGGATACAGT 60.021 41.667 0.00 0.00 0.00 3.55
1606 2896 3.119352 GGCCAAGATCACCAAATCAAGAC 60.119 47.826 0.00 0.00 0.00 3.01
1630 2920 5.146482 TGTTCCGTCTTTTACAACGAAAG 57.854 39.130 0.00 0.00 41.29 2.62
1693 2987 4.339247 AGCTGTGTTGTTGTAGCAAAGATT 59.661 37.500 0.00 0.00 38.59 2.40
1798 3095 9.251440 ACAACCAACTACTCTAGTGAATACATA 57.749 33.333 0.00 0.00 39.39 2.29
1935 3232 5.200483 CCTCCCTATGCCATACTTCAAAAA 58.800 41.667 0.00 0.00 0.00 1.94
1952 3249 0.337428 AGAATTTGCATGGCCTCCCT 59.663 50.000 3.32 0.00 0.00 4.20
2106 3405 5.180271 CAGCGGTAACCTAACCTGAATAAA 58.820 41.667 0.00 0.00 37.39 1.40
2211 3510 2.418368 TAGCGCAATCCCTGAAATGT 57.582 45.000 11.47 0.00 0.00 2.71
2285 3584 3.503363 GCAGAAGACCACATGAACATCAA 59.497 43.478 0.00 0.00 0.00 2.57
2476 3775 0.395724 GGGTGGGGATGGTTGATGTC 60.396 60.000 0.00 0.00 0.00 3.06
2700 4001 4.451096 TGTAACTGAATTTCGAGCAAGGTC 59.549 41.667 0.00 0.00 0.00 3.85
2791 4094 1.003118 ACGGAAATCAAGCAGCACCTA 59.997 47.619 0.00 0.00 0.00 3.08
2871 4179 5.538118 AGACGTGTGAATATTGTGTCAAGA 58.462 37.500 0.00 0.00 0.00 3.02
3024 4332 3.513680 ACAGTCACTTTCGTACACACA 57.486 42.857 0.00 0.00 0.00 3.72
3043 4351 1.668751 TGCTCTTTGTGGTCGTTCAAC 59.331 47.619 0.00 0.00 0.00 3.18
3049 4357 3.420839 AAAAACTGCTCTTTGTGGTCG 57.579 42.857 0.00 0.00 0.00 4.79
3065 4373 7.173047 CACGTAAACTTAGCCTAAGGGTAAAAA 59.827 37.037 15.61 0.00 43.67 1.94
3070 4378 3.618263 GCACGTAAACTTAGCCTAAGGGT 60.618 47.826 15.61 5.57 40.08 4.34
3169 4479 7.234355 AGGTCAAGTTTCCTGAGTAATTCATT 58.766 34.615 0.00 0.00 34.68 2.57
3535 4855 4.273480 CCTCCAGATAAACCAAAGTATGCG 59.727 45.833 0.00 0.00 0.00 4.73
3655 4978 2.969628 ACCCCCAAAATGTCATCACAA 58.030 42.857 0.00 0.00 35.64 3.33
3670 4993 3.575256 AGTATTCGAAAACCAAAACCCCC 59.425 43.478 0.00 0.00 0.00 5.40
3782 5107 6.143915 ACCTAATGTGTACCCAGTATCTGAT 58.856 40.000 0.00 0.00 32.44 2.90
4003 5348 9.730420 CCAAACTATTATTGTAATTACTGGCAC 57.270 33.333 16.33 0.00 0.00 5.01
4408 5872 2.548057 ACAGTAATTGTGCTTGGTGTCG 59.452 45.455 0.00 0.00 38.99 4.35
4571 6035 4.518970 GCAGAAGACATAAACAAACCTGGA 59.481 41.667 0.00 0.00 0.00 3.86
4826 6453 3.090037 TGCGAAGGCTAGATATCCTACC 58.910 50.000 0.00 0.00 40.82 3.18
4838 6465 4.240096 CTGAAAATTGAAATGCGAAGGCT 58.760 39.130 0.00 0.00 40.82 4.58
4844 6471 8.673626 AGTTGTATACTGAAAATTGAAATGCG 57.326 30.769 4.17 0.00 35.19 4.73
4955 6583 1.971481 AGTTTGATGCTGTGACTGCA 58.029 45.000 19.17 19.17 42.03 4.41
5008 6636 8.863872 AAAGAGATGCTAAAAGCCTAAAAGTA 57.136 30.769 0.00 0.00 41.51 2.24
5223 6851 9.494271 GAATATTCATGTTCTAGTCAGCCAATA 57.506 33.333 10.68 0.00 0.00 1.90
5228 6856 8.359642 AGAGAGAATATTCATGTTCTAGTCAGC 58.640 37.037 17.56 0.00 38.19 4.26
5311 6939 9.038803 GCAGAAAGTCAAAAAGAATTCTCAAAT 57.961 29.630 8.78 0.00 34.31 2.32
5336 6964 6.557291 AGAAGCAGCAAAATATAGATGAGC 57.443 37.500 0.00 0.00 0.00 4.26
5436 7064 9.397280 TGTATCGTGAAATTGGGAAACATTATA 57.603 29.630 0.00 0.00 0.00 0.98
5585 7213 9.758651 ATGATTCATTATCAACATCCACATTTG 57.241 29.630 0.00 0.00 45.99 2.32
5731 7360 6.536224 CCAGAAATCCACCAATTTCATTTAGC 59.464 38.462 10.87 0.00 44.51 3.09
5856 7485 0.179121 TGTCGCCATAACCTAGTGCG 60.179 55.000 0.00 0.00 46.09 5.34
5857 7486 1.134788 AGTGTCGCCATAACCTAGTGC 60.135 52.381 0.00 0.00 0.00 4.40
5922 7553 5.476614 AGCAACTACTACTTTTTCCCTACG 58.523 41.667 0.00 0.00 0.00 3.51
6078 7755 1.075374 CCATGTCCCTTTTCCCACTCA 59.925 52.381 0.00 0.00 0.00 3.41
6266 7943 0.321996 ACCGAACTCTCCTGCTTTCC 59.678 55.000 0.00 0.00 0.00 3.13
6282 7959 0.736325 CTTTGAGGGACGCTGTACCG 60.736 60.000 0.00 0.00 42.43 4.02
6323 8001 3.053831 ACCTGGGACATTCACTAAACG 57.946 47.619 0.00 0.00 38.20 3.60
6334 8012 2.747443 TTGCCGACAACCTGGGACA 61.747 57.895 0.00 0.00 0.00 4.02
6392 8070 1.997928 GCATGAAAGAGGAAGCCGCC 61.998 60.000 0.00 0.00 0.00 6.13
6407 8085 1.226101 GAACACCATCGCACGCATG 60.226 57.895 0.00 0.00 0.00 4.06
6410 8088 4.147322 CCGAACACCATCGCACGC 62.147 66.667 0.00 0.00 41.40 5.34
6416 8094 1.584495 GTTTGCCCCGAACACCATC 59.416 57.895 0.00 0.00 0.00 3.51
6486 8165 1.078918 TCCGCCACTCTGCTGATTG 60.079 57.895 4.23 4.23 0.00 2.67
6519 8198 4.796495 CCACCCCCAAGCCGCTAC 62.796 72.222 0.00 0.00 0.00 3.58
6605 8405 9.000978 TCTCTCTTACTAACTAATACTCCCTCA 57.999 37.037 0.00 0.00 0.00 3.86
6668 8965 8.654485 TCGGAGGGCTAATTATACAAATACTA 57.346 34.615 0.00 0.00 0.00 1.82
6677 8974 4.228824 ACCAGTTCGGAGGGCTAATTATA 58.771 43.478 0.00 0.00 38.63 0.98
6678 8975 3.046374 ACCAGTTCGGAGGGCTAATTAT 58.954 45.455 0.00 0.00 38.63 1.28
6981 9339 6.530019 ACACAAAAATAATTCTAGCAGGGG 57.470 37.500 0.00 0.00 0.00 4.79
7014 9373 5.761234 ACAGTTTAATGAGAACCGTAGCAAA 59.239 36.000 0.00 0.00 0.00 3.68
7015 9374 5.302360 ACAGTTTAATGAGAACCGTAGCAA 58.698 37.500 0.00 0.00 0.00 3.91
7074 9433 5.723672 TTTTGACACTACACTAGAGGGAG 57.276 43.478 0.00 0.00 0.00 4.30
7075 9434 5.508489 CGTTTTTGACACTACACTAGAGGGA 60.508 44.000 0.00 0.00 0.00 4.20
7076 9435 4.684703 CGTTTTTGACACTACACTAGAGGG 59.315 45.833 0.00 0.00 0.00 4.30
7077 9436 4.150098 GCGTTTTTGACACTACACTAGAGG 59.850 45.833 0.00 0.00 0.00 3.69
7078 9437 4.982916 AGCGTTTTTGACACTACACTAGAG 59.017 41.667 0.00 0.00 0.00 2.43
7079 9438 4.940463 AGCGTTTTTGACACTACACTAGA 58.060 39.130 0.00 0.00 0.00 2.43
7080 9439 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
7081 9440 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
7082 9441 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
7083 9442 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
7084 9443 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
7087 9446 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
7088 9447 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
7089 9448 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
7090 9449 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
7091 9450 7.771361 TGTCCCATAATATAAGAGCGTTTTTGA 59.229 33.333 0.00 0.00 0.00 2.69
7092 9451 7.925993 TGTCCCATAATATAAGAGCGTTTTTG 58.074 34.615 0.00 0.00 0.00 2.44
7093 9452 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
7094 9453 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
7095 9454 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
7096 9455 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
7097 9456 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
7098 9457 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
7099 9458 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
7100 9459 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
7101 9460 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
7102 9461 8.846423 ATACTCCCTCTGTCCCATAATATAAG 57.154 38.462 0.00 0.00 0.00 1.73
7105 9464 9.440761 GATAATACTCCCTCTGTCCCATAATAT 57.559 37.037 0.00 0.00 0.00 1.28
7106 9465 7.844779 GGATAATACTCCCTCTGTCCCATAATA 59.155 40.741 0.00 0.00 0.00 0.98
7107 9466 6.674419 GGATAATACTCCCTCTGTCCCATAAT 59.326 42.308 0.00 0.00 0.00 1.28
7108 9467 6.023603 GGATAATACTCCCTCTGTCCCATAA 58.976 44.000 0.00 0.00 0.00 1.90
7109 9468 5.318889 AGGATAATACTCCCTCTGTCCCATA 59.681 44.000 0.00 0.00 35.79 2.74
7110 9469 4.110426 AGGATAATACTCCCTCTGTCCCAT 59.890 45.833 0.00 0.00 35.79 4.00
7111 9470 3.471306 AGGATAATACTCCCTCTGTCCCA 59.529 47.826 0.00 0.00 35.79 4.37
7112 9471 3.835395 CAGGATAATACTCCCTCTGTCCC 59.165 52.174 0.00 0.00 35.79 4.46
7113 9472 4.282195 CACAGGATAATACTCCCTCTGTCC 59.718 50.000 0.00 0.00 35.79 4.02
7114 9473 4.262249 GCACAGGATAATACTCCCTCTGTC 60.262 50.000 0.00 0.00 35.79 3.51
7115 9474 3.643792 GCACAGGATAATACTCCCTCTGT 59.356 47.826 0.00 0.00 35.79 3.41
7116 9475 3.007398 GGCACAGGATAATACTCCCTCTG 59.993 52.174 0.00 0.00 35.79 3.35
7117 9476 3.243724 GGCACAGGATAATACTCCCTCT 58.756 50.000 0.00 0.00 35.79 3.69
7118 9477 2.972713 TGGCACAGGATAATACTCCCTC 59.027 50.000 0.00 0.00 35.79 4.30
7119 9478 3.060479 TGGCACAGGATAATACTCCCT 57.940 47.619 0.00 0.00 35.79 4.20
7120 9479 3.136626 ACTTGGCACAGGATAATACTCCC 59.863 47.826 0.00 0.00 42.39 4.30
7121 9480 4.101741 AGACTTGGCACAGGATAATACTCC 59.898 45.833 0.00 0.00 42.39 3.85
7122 9481 5.283457 AGACTTGGCACAGGATAATACTC 57.717 43.478 0.00 0.00 42.39 2.59
7123 9482 5.426833 AGAAGACTTGGCACAGGATAATACT 59.573 40.000 0.00 0.00 42.39 2.12
7124 9483 5.525378 CAGAAGACTTGGCACAGGATAATAC 59.475 44.000 0.00 0.00 42.39 1.89
7125 9484 5.189736 ACAGAAGACTTGGCACAGGATAATA 59.810 40.000 0.00 0.00 42.39 0.98
7126 9485 4.018960 ACAGAAGACTTGGCACAGGATAAT 60.019 41.667 0.00 0.00 42.39 1.28
7209 9568 3.727726 CATACGGCCATAGTCAACATCA 58.272 45.455 2.24 0.00 0.00 3.07
7210 9569 2.480419 GCATACGGCCATAGTCAACATC 59.520 50.000 2.24 0.00 36.11 3.06
7211 9570 2.158827 TGCATACGGCCATAGTCAACAT 60.159 45.455 2.24 0.00 43.89 2.71
7212 9571 1.208293 TGCATACGGCCATAGTCAACA 59.792 47.619 2.24 0.00 43.89 3.33
7213 9572 1.948104 TGCATACGGCCATAGTCAAC 58.052 50.000 2.24 0.00 43.89 3.18
7214 9573 2.368548 AGATGCATACGGCCATAGTCAA 59.631 45.455 2.24 0.00 43.89 3.18
7215 9574 1.970640 AGATGCATACGGCCATAGTCA 59.029 47.619 2.24 0.00 43.89 3.41
7216 9575 2.751166 AGATGCATACGGCCATAGTC 57.249 50.000 2.24 0.00 43.89 2.59
7217 9576 3.403038 GAAAGATGCATACGGCCATAGT 58.597 45.455 2.24 0.00 43.89 2.12
7218 9577 2.413112 CGAAAGATGCATACGGCCATAG 59.587 50.000 2.24 0.00 43.89 2.23
7219 9578 2.412870 CGAAAGATGCATACGGCCATA 58.587 47.619 2.24 0.00 43.89 2.74
7220 9579 1.229428 CGAAAGATGCATACGGCCAT 58.771 50.000 2.24 0.00 43.89 4.40
7221 9580 0.813610 CCGAAAGATGCATACGGCCA 60.814 55.000 16.71 0.00 43.89 5.36
7222 9581 0.531974 TCCGAAAGATGCATACGGCC 60.532 55.000 21.15 0.00 43.89 6.13
7223 9582 1.195448 CATCCGAAAGATGCATACGGC 59.805 52.381 21.15 2.76 45.76 5.68
7232 9591 0.179034 GGCCTCTGCATCCGAAAGAT 60.179 55.000 0.00 0.00 40.13 2.40
7233 9592 1.221840 GGCCTCTGCATCCGAAAGA 59.778 57.895 0.00 0.00 40.13 2.52
7234 9593 2.176273 CGGCCTCTGCATCCGAAAG 61.176 63.158 0.00 0.00 45.53 2.62
7235 9594 2.125147 CGGCCTCTGCATCCGAAA 60.125 61.111 0.00 0.00 45.53 3.46
7236 9595 4.161295 CCGGCCTCTGCATCCGAA 62.161 66.667 15.42 0.00 45.53 4.30
7244 9603 3.866582 GATCACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
7250 9609 2.844839 GAGGAGGATCACCCCCGG 60.845 72.222 0.00 0.00 36.25 5.73
7251 9610 2.844839 GGAGGAGGATCACCCCCG 60.845 72.222 0.00 0.00 36.25 5.73
7252 9611 1.460497 GAGGAGGAGGATCACCCCC 60.460 68.421 0.00 0.00 36.25 5.40
7253 9612 0.326618 TTGAGGAGGAGGATCACCCC 60.327 60.000 0.00 1.89 36.25 4.95
7254 9613 1.584724 TTTGAGGAGGAGGATCACCC 58.415 55.000 0.00 0.00 36.25 4.61
7255 9614 3.721087 TTTTTGAGGAGGAGGATCACC 57.279 47.619 0.00 0.00 36.25 4.02
7278 9637 3.642141 AGTCAACATCAGTGGGGTTTTT 58.358 40.909 0.00 0.00 0.00 1.94
7279 9638 3.312736 AGTCAACATCAGTGGGGTTTT 57.687 42.857 0.00 0.00 0.00 2.43
7280 9639 2.958355 CAAGTCAACATCAGTGGGGTTT 59.042 45.455 0.00 0.00 0.00 3.27
7281 9640 2.586425 CAAGTCAACATCAGTGGGGTT 58.414 47.619 0.00 0.00 0.00 4.11
7282 9641 1.202927 CCAAGTCAACATCAGTGGGGT 60.203 52.381 0.00 0.00 0.00 4.95
7283 9642 1.073763 TCCAAGTCAACATCAGTGGGG 59.926 52.381 0.00 0.00 0.00 4.96
7284 9643 2.566833 TCCAAGTCAACATCAGTGGG 57.433 50.000 0.00 0.00 0.00 4.61
7285 9644 4.763793 AGAATTCCAAGTCAACATCAGTGG 59.236 41.667 0.65 0.00 0.00 4.00
7286 9645 5.240183 ACAGAATTCCAAGTCAACATCAGTG 59.760 40.000 0.65 0.00 0.00 3.66
7287 9646 5.240183 CACAGAATTCCAAGTCAACATCAGT 59.760 40.000 0.65 0.00 0.00 3.41
7288 9647 5.240183 ACACAGAATTCCAAGTCAACATCAG 59.760 40.000 0.65 0.00 0.00 2.90
7343 9702 3.664025 GCGCACAATTCACAACTTCTTAC 59.336 43.478 0.30 0.00 0.00 2.34
7357 9716 0.823356 AAACCTGGAGTGCGCACAAT 60.823 50.000 39.21 22.58 0.00 2.71
7377 9736 1.362355 CAAGGCCCACCACGAAAAC 59.638 57.895 0.00 0.00 39.06 2.43
7387 9746 1.228245 GACTGACAAGCAAGGCCCA 60.228 57.895 0.00 0.00 0.00 5.36
7441 9800 1.893808 CAAGCGACACAGGCACCTT 60.894 57.895 0.00 0.00 0.00 3.50
7452 9811 2.563427 GAAGCCCAAGCAAGCGAC 59.437 61.111 0.00 0.00 43.56 5.19
7470 9829 1.521681 GACGGCTGGCAGGTGATAC 60.522 63.158 17.64 0.00 0.00 2.24
7515 9874 1.755959 ACTGCTCTGCCTATGTCTGAG 59.244 52.381 0.00 0.00 34.09 3.35
7588 9947 2.356667 CAAGGAGGCCAAGGGACC 59.643 66.667 5.01 0.00 0.00 4.46
7589 9948 2.361737 GCAAGGAGGCCAAGGGAC 60.362 66.667 5.01 0.00 0.00 4.46
7590 9949 2.858476 TGCAAGGAGGCCAAGGGA 60.858 61.111 5.01 0.00 0.00 4.20
7591 9950 2.677875 GTGCAAGGAGGCCAAGGG 60.678 66.667 5.01 0.00 0.00 3.95
7592 9951 0.034186 TATGTGCAAGGAGGCCAAGG 60.034 55.000 5.01 0.00 0.00 3.61
7593 9952 1.952296 GATATGTGCAAGGAGGCCAAG 59.048 52.381 5.01 0.00 0.00 3.61
7594 9953 1.746861 CGATATGTGCAAGGAGGCCAA 60.747 52.381 5.01 0.00 0.00 4.52
7595 9954 0.179048 CGATATGTGCAAGGAGGCCA 60.179 55.000 5.01 0.00 0.00 5.36
7596 9955 0.106708 TCGATATGTGCAAGGAGGCC 59.893 55.000 0.00 0.00 0.00 5.19
7597 9956 1.599542 GTTCGATATGTGCAAGGAGGC 59.400 52.381 0.00 0.00 0.00 4.70
7598 9957 2.609459 GTGTTCGATATGTGCAAGGAGG 59.391 50.000 0.00 0.00 0.00 4.30
7614 9984 1.064825 TTCAAGGGAGGAGGGTGTTC 58.935 55.000 0.00 0.00 0.00 3.18
7617 9987 1.296715 CGTTCAAGGGAGGAGGGTG 59.703 63.158 0.00 0.00 0.00 4.61
7631 10001 0.037232 ACCTGTCTGCCTTAGCGTTC 60.037 55.000 0.00 0.00 44.31 3.95
7644 10014 1.473278 CGTCTAGTTCCCTCACCTGTC 59.527 57.143 0.00 0.00 0.00 3.51
7651 10021 4.441217 GGGATTGTTACGTCTAGTTCCCTC 60.441 50.000 15.09 0.00 40.27 4.30
7655 10025 6.980051 ATTTGGGATTGTTACGTCTAGTTC 57.020 37.500 0.00 0.00 0.00 3.01
7661 10031 5.379732 TGGAAATTTGGGATTGTTACGTC 57.620 39.130 0.00 0.00 0.00 4.34
7662 10032 5.069251 TGTTGGAAATTTGGGATTGTTACGT 59.931 36.000 0.00 0.00 0.00 3.57
7663 10033 5.533482 TGTTGGAAATTTGGGATTGTTACG 58.467 37.500 0.00 0.00 0.00 3.18
7664 10034 7.158021 TGATGTTGGAAATTTGGGATTGTTAC 58.842 34.615 0.00 0.00 0.00 2.50
7665 10035 7.308450 TGATGTTGGAAATTTGGGATTGTTA 57.692 32.000 0.00 0.00 0.00 2.41
7673 10043 3.685756 GTGGCATGATGTTGGAAATTTGG 59.314 43.478 0.00 0.00 0.00 3.28
7723 10093 0.034670 AAGCACATCTCCCTCCAAGC 60.035 55.000 0.00 0.00 0.00 4.01
7738 10108 1.951209 TGTCCTCCAGTCCATAAGCA 58.049 50.000 0.00 0.00 0.00 3.91
7740 10110 4.040952 CCCTAATGTCCTCCAGTCCATAAG 59.959 50.000 0.00 0.00 0.00 1.73
7741 10111 3.973973 CCCTAATGTCCTCCAGTCCATAA 59.026 47.826 0.00 0.00 0.00 1.90
7742 10112 3.051341 ACCCTAATGTCCTCCAGTCCATA 60.051 47.826 0.00 0.00 0.00 2.74
7744 10114 1.080498 ACCCTAATGTCCTCCAGTCCA 59.920 52.381 0.00 0.00 0.00 4.02
7760 10130 1.842562 CCAGATCTCACATCCAACCCT 59.157 52.381 0.00 0.00 0.00 4.34
7765 10135 0.687427 TCCGCCAGATCTCACATCCA 60.687 55.000 0.00 0.00 0.00 3.41
7769 10139 1.323271 GGACTCCGCCAGATCTCACA 61.323 60.000 0.00 0.00 0.00 3.58
7773 10143 1.760086 CCAGGACTCCGCCAGATCT 60.760 63.158 0.00 0.00 0.00 2.75
7777 10147 3.465403 CTCCCAGGACTCCGCCAG 61.465 72.222 0.00 0.00 0.00 4.85
7804 10182 3.028366 GCTTTGACCTTCGCTCGCC 62.028 63.158 0.00 0.00 0.00 5.54
7821 10199 2.434359 GGTGTCCACGGCTACAGC 60.434 66.667 0.00 0.00 37.00 4.40
7822 10200 2.126071 CGGTGTCCACGGCTACAG 60.126 66.667 0.00 0.00 0.00 2.74
7823 10201 3.687102 CCGGTGTCCACGGCTACA 61.687 66.667 0.00 0.00 45.34 2.74
7829 10207 4.293648 TCACTGCCGGTGTCCACG 62.294 66.667 1.90 0.00 45.50 4.94
7830 10208 2.357517 CTCACTGCCGGTGTCCAC 60.358 66.667 1.90 0.00 45.50 4.02
7831 10209 4.314440 GCTCACTGCCGGTGTCCA 62.314 66.667 1.90 0.00 45.50 4.02
7832 10210 3.537206 AAGCTCACTGCCGGTGTCC 62.537 63.158 1.90 0.00 45.50 4.02
7833 10211 2.029844 GAAGCTCACTGCCGGTGTC 61.030 63.158 1.90 0.00 45.50 3.67
7834 10212 2.031163 GAAGCTCACTGCCGGTGT 59.969 61.111 1.90 0.00 45.50 4.16
7835 10213 1.597854 TTGAAGCTCACTGCCGGTG 60.598 57.895 1.90 0.00 46.60 4.94
7836 10214 1.598130 GTTGAAGCTCACTGCCGGT 60.598 57.895 1.90 0.00 44.23 5.28
7837 10215 2.671177 CGTTGAAGCTCACTGCCGG 61.671 63.158 0.00 0.00 44.23 6.13
7838 10216 1.956170 ACGTTGAAGCTCACTGCCG 60.956 57.895 0.00 0.00 44.23 5.69
7839 10217 0.880278 TCACGTTGAAGCTCACTGCC 60.880 55.000 0.00 0.00 44.23 4.85
7840 10218 0.233332 GTCACGTTGAAGCTCACTGC 59.767 55.000 0.00 0.00 43.29 4.40
7841 10219 0.861837 GGTCACGTTGAAGCTCACTG 59.138 55.000 0.00 0.00 0.00 3.66
7842 10220 0.464036 TGGTCACGTTGAAGCTCACT 59.536 50.000 0.00 0.00 0.00 3.41
7843 10221 1.512926 ATGGTCACGTTGAAGCTCAC 58.487 50.000 0.00 0.00 0.00 3.51
7844 10222 2.254546 AATGGTCACGTTGAAGCTCA 57.745 45.000 0.00 0.00 0.00 4.26
7845 10223 3.064207 TGTAATGGTCACGTTGAAGCTC 58.936 45.455 0.00 0.00 0.00 4.09
7846 10224 3.120321 TGTAATGGTCACGTTGAAGCT 57.880 42.857 0.00 0.00 0.00 3.74
7847 10225 3.483574 CGATGTAATGGTCACGTTGAAGC 60.484 47.826 0.00 0.00 0.00 3.86
7848 10226 3.924073 TCGATGTAATGGTCACGTTGAAG 59.076 43.478 0.00 0.00 0.00 3.02
7849 10227 3.676172 GTCGATGTAATGGTCACGTTGAA 59.324 43.478 0.00 0.00 29.21 2.69
7850 10228 3.247442 GTCGATGTAATGGTCACGTTGA 58.753 45.455 0.00 0.00 0.00 3.18
7851 10229 2.027569 CGTCGATGTAATGGTCACGTTG 59.972 50.000 0.00 0.00 0.00 4.10
7852 10230 2.256174 CGTCGATGTAATGGTCACGTT 58.744 47.619 0.00 0.00 0.00 3.99
7853 10231 1.200716 ACGTCGATGTAATGGTCACGT 59.799 47.619 8.94 0.00 34.34 4.49
7854 10232 1.904144 ACGTCGATGTAATGGTCACG 58.096 50.000 8.94 0.00 0.00 4.35
7855 10233 2.222729 GCAACGTCGATGTAATGGTCAC 60.223 50.000 11.40 0.00 0.00 3.67
7856 10234 1.996898 GCAACGTCGATGTAATGGTCA 59.003 47.619 11.40 0.00 0.00 4.02
7857 10235 1.326548 GGCAACGTCGATGTAATGGTC 59.673 52.381 11.40 0.00 0.00 4.02
7858 10236 1.066430 AGGCAACGTCGATGTAATGGT 60.066 47.619 11.40 0.00 46.39 3.55
7859 10237 1.651987 AGGCAACGTCGATGTAATGG 58.348 50.000 11.40 2.71 46.39 3.16
7860 10238 3.304382 GAAGGCAACGTCGATGTAATG 57.696 47.619 11.40 7.90 46.39 1.90
7869 10247 0.375803 ACAAACACGAAGGCAACGTC 59.624 50.000 6.06 0.00 42.07 4.34
7870 10248 0.098025 CACAAACACGAAGGCAACGT 59.902 50.000 3.40 3.40 44.83 3.99
7871 10249 0.098025 ACACAAACACGAAGGCAACG 59.902 50.000 0.00 2.15 46.39 4.10
7872 10250 1.544686 CACACAAACACGAAGGCAAC 58.455 50.000 0.00 0.00 0.00 4.17
7873 10251 0.179150 GCACACAAACACGAAGGCAA 60.179 50.000 0.00 0.00 0.00 4.52
7874 10252 1.431440 GCACACAAACACGAAGGCA 59.569 52.632 0.00 0.00 0.00 4.75
7875 10253 1.299089 GGCACACAAACACGAAGGC 60.299 57.895 0.00 0.00 0.00 4.35
7876 10254 0.307760 GAGGCACACAAACACGAAGG 59.692 55.000 0.00 0.00 0.00 3.46
7877 10255 0.307760 GGAGGCACACAAACACGAAG 59.692 55.000 0.00 0.00 0.00 3.79
7878 10256 1.433053 CGGAGGCACACAAACACGAA 61.433 55.000 0.00 0.00 0.00 3.85
7879 10257 1.885388 CGGAGGCACACAAACACGA 60.885 57.895 0.00 0.00 0.00 4.35
7880 10258 2.631428 CGGAGGCACACAAACACG 59.369 61.111 0.00 0.00 0.00 4.49
7881 10259 3.030652 CCGGAGGCACACAAACAC 58.969 61.111 0.00 0.00 46.14 3.32
7893 10271 0.396695 TCTAACCCCACTAGCCGGAG 60.397 60.000 5.05 0.00 0.00 4.63
7894 10272 0.396695 CTCTAACCCCACTAGCCGGA 60.397 60.000 5.05 0.00 0.00 5.14
7895 10273 0.396695 TCTCTAACCCCACTAGCCGG 60.397 60.000 0.00 0.00 0.00 6.13
7896 10274 1.614413 GATCTCTAACCCCACTAGCCG 59.386 57.143 0.00 0.00 0.00 5.52
7897 10275 1.972075 GGATCTCTAACCCCACTAGCC 59.028 57.143 0.00 0.00 0.00 3.93
7898 10276 2.630580 CTGGATCTCTAACCCCACTAGC 59.369 54.545 0.00 0.00 0.00 3.42
7899 10277 4.186077 TCTGGATCTCTAACCCCACTAG 57.814 50.000 0.00 0.00 0.00 2.57
7900 10278 4.547671 CTTCTGGATCTCTAACCCCACTA 58.452 47.826 0.00 0.00 0.00 2.74
7901 10279 3.379452 CTTCTGGATCTCTAACCCCACT 58.621 50.000 0.00 0.00 0.00 4.00
7902 10280 2.436173 CCTTCTGGATCTCTAACCCCAC 59.564 54.545 0.00 0.00 34.57 4.61
7903 10281 2.045885 ACCTTCTGGATCTCTAACCCCA 59.954 50.000 0.00 0.00 37.04 4.96
7904 10282 2.765502 ACCTTCTGGATCTCTAACCCC 58.234 52.381 0.00 0.00 37.04 4.95
7905 10283 4.518249 CAAACCTTCTGGATCTCTAACCC 58.482 47.826 0.00 0.00 37.04 4.11
7906 10284 4.518249 CCAAACCTTCTGGATCTCTAACC 58.482 47.826 0.00 0.00 35.85 2.85
7907 10285 4.518249 CCCAAACCTTCTGGATCTCTAAC 58.482 47.826 0.00 0.00 35.85 2.34
7908 10286 3.054361 GCCCAAACCTTCTGGATCTCTAA 60.054 47.826 0.00 0.00 35.85 2.10
7909 10287 2.505819 GCCCAAACCTTCTGGATCTCTA 59.494 50.000 0.00 0.00 35.85 2.43
7910 10288 1.283321 GCCCAAACCTTCTGGATCTCT 59.717 52.381 0.00 0.00 35.85 3.10
7911 10289 1.683319 GGCCCAAACCTTCTGGATCTC 60.683 57.143 0.00 0.00 35.85 2.75
7912 10290 0.332972 GGCCCAAACCTTCTGGATCT 59.667 55.000 0.00 0.00 35.85 2.75
7913 10291 0.332972 AGGCCCAAACCTTCTGGATC 59.667 55.000 0.00 0.00 36.28 3.36
7914 10292 2.491271 AGGCCCAAACCTTCTGGAT 58.509 52.632 0.00 0.00 36.28 3.41
7915 10293 4.018195 AGGCCCAAACCTTCTGGA 57.982 55.556 0.00 0.00 36.28 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.