Multiple sequence alignment - TraesCS3A01G229300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G229300 chr3A 100.000 3915 0 0 1 3915 429320233 429324147 0.000000e+00 7230
1 TraesCS3A01G229300 chr3B 90.175 2860 97 71 75 2820 411846830 411844041 0.000000e+00 3555
2 TraesCS3A01G229300 chr3B 94.766 917 24 8 3002 3915 411838241 411837346 0.000000e+00 1406
3 TraesCS3A01G229300 chr3B 97.436 78 2 0 7 84 411847223 411847146 2.450000e-27 134
4 TraesCS3A01G229300 chr3D 93.183 2215 65 37 1 2171 309652324 309654496 0.000000e+00 3175
5 TraesCS3A01G229300 chr3D 94.323 916 24 8 3008 3915 309659051 309659946 0.000000e+00 1378
6 TraesCS3A01G229300 chr3D 97.853 652 9 4 2170 2821 309654528 309655174 0.000000e+00 1122
7 TraesCS3A01G229300 chr1D 87.500 160 20 0 2200 2359 481603405 481603564 6.680000e-43 185
8 TraesCS3A01G229300 chr1B 86.957 161 19 2 2200 2359 670202879 670203038 3.110000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G229300 chr3A 429320233 429324147 3914 False 7230.000000 7230 100.000000 1 3915 1 chr3A.!!$F1 3914
1 TraesCS3A01G229300 chr3B 411844041 411847223 3182 True 1844.500000 3555 93.805500 7 2820 2 chr3B.!!$R2 2813
2 TraesCS3A01G229300 chr3B 411837346 411838241 895 True 1406.000000 1406 94.766000 3002 3915 1 chr3B.!!$R1 913
3 TraesCS3A01G229300 chr3D 309652324 309659946 7622 False 1891.666667 3175 95.119667 1 3915 3 chr3D.!!$F1 3914

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 979 0.036875 CGGCTTCCATATTCCCCTCC 59.963 60.0 0.0 0.0 0.00 4.30 F
628 980 0.405973 GGCTTCCATATTCCCCTCCC 59.594 60.0 0.0 0.0 0.00 4.30 F
1838 2239 0.317436 CTCGTCGATGCACTAGCTCC 60.317 60.0 0.0 0.0 42.74 4.70 F
2066 2499 1.015085 GCGCATCTTGCAATTTGGCA 61.015 50.0 0.3 0.0 45.36 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 2206 0.110509 GACGAGACGACAGTAACGCA 60.111 55.0 0.0 0.0 34.23 5.24 R
2074 2510 0.320334 CATGTGACGTGTAGTGGCCA 60.320 55.0 0.0 0.0 0.00 5.36 R
2858 3328 0.107654 GATCTACCAGGCAAACCGCT 60.108 55.0 0.0 0.0 42.76 5.52 R
2990 3474 0.180642 TTACTGGTTTGGCGTGGTCA 59.819 50.0 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.171903 ATAACGTGGACGGACCGAAG 59.828 55.000 23.38 8.91 44.95 3.79
61 62 0.592637 TGTCATTCAACGCAAGGCAG 59.407 50.000 0.00 0.00 46.39 4.85
62 63 0.109597 GTCATTCAACGCAAGGCAGG 60.110 55.000 0.00 0.00 46.39 4.85
63 64 1.444895 CATTCAACGCAAGGCAGGC 60.445 57.895 0.00 0.00 46.39 4.85
64 65 1.902918 ATTCAACGCAAGGCAGGCA 60.903 52.632 0.00 0.00 46.39 4.75
65 66 1.870055 ATTCAACGCAAGGCAGGCAG 61.870 55.000 0.00 0.00 46.39 4.85
66 67 4.047059 CAACGCAAGGCAGGCAGG 62.047 66.667 0.00 0.00 46.39 4.85
107 441 8.383318 AGTTATCCATATCTTCCAATTGTTCG 57.617 34.615 4.43 0.00 0.00 3.95
249 589 4.893424 GGCAACTACACTAGAGAGAGAG 57.107 50.000 0.00 0.00 0.00 3.20
250 590 4.519213 GGCAACTACACTAGAGAGAGAGA 58.481 47.826 0.00 0.00 0.00 3.10
251 591 4.574828 GGCAACTACACTAGAGAGAGAGAG 59.425 50.000 0.00 0.00 0.00 3.20
414 760 2.660258 ATTGGAGCCCCACGCGATAC 62.660 60.000 15.93 0.00 43.41 2.24
469 821 0.169009 GAGATTTTGTGCCACGCCTC 59.831 55.000 0.00 0.00 0.00 4.70
470 822 0.250901 AGATTTTGTGCCACGCCTCT 60.251 50.000 0.00 0.00 0.00 3.69
471 823 0.169009 GATTTTGTGCCACGCCTCTC 59.831 55.000 0.00 0.00 0.00 3.20
472 824 1.244019 ATTTTGTGCCACGCCTCTCC 61.244 55.000 0.00 0.00 0.00 3.71
593 945 2.751806 GGCATAAAGAGTCAAGCAAGCT 59.248 45.455 0.00 0.00 0.00 3.74
594 946 3.192212 GGCATAAAGAGTCAAGCAAGCTT 59.808 43.478 0.59 0.59 36.60 3.74
595 947 4.321527 GGCATAAAGAGTCAAGCAAGCTTT 60.322 41.667 4.24 0.00 33.42 3.51
626 978 0.606673 GCGGCTTCCATATTCCCCTC 60.607 60.000 0.00 0.00 0.00 4.30
627 979 0.036875 CGGCTTCCATATTCCCCTCC 59.963 60.000 0.00 0.00 0.00 4.30
628 980 0.405973 GGCTTCCATATTCCCCTCCC 59.594 60.000 0.00 0.00 0.00 4.30
629 981 0.405973 GCTTCCATATTCCCCTCCCC 59.594 60.000 0.00 0.00 0.00 4.81
630 982 2.053251 GCTTCCATATTCCCCTCCCCT 61.053 57.143 0.00 0.00 0.00 4.79
761 1117 0.983378 GAGGAGAAGCCAAGGCCCTA 60.983 60.000 7.62 0.00 43.17 3.53
810 1168 3.506067 GCCCCAGTATACAATACAATGCC 59.494 47.826 5.50 0.00 0.00 4.40
849 1207 1.797211 ATCCGGACGCGATCTTCTCC 61.797 60.000 15.93 7.19 0.00 3.71
937 1304 2.997315 CCCTCGTGCCACTCCAGA 60.997 66.667 0.00 0.00 0.00 3.86
1028 1398 2.781431 AAAGTCAACCCCATCCCGCC 62.781 60.000 0.00 0.00 0.00 6.13
1062 1433 0.533755 GCGTCCGTCCTACCTAGCTA 60.534 60.000 0.00 0.00 0.00 3.32
1063 1434 1.510776 CGTCCGTCCTACCTAGCTAG 58.489 60.000 14.20 14.20 0.00 3.42
1064 1435 1.237533 GTCCGTCCTACCTAGCTAGC 58.762 60.000 15.74 6.62 0.00 3.42
1065 1436 1.138568 TCCGTCCTACCTAGCTAGCT 58.861 55.000 23.12 23.12 0.00 3.32
1098 1469 1.409381 CCTCTCCAAGCTCAAATCCCC 60.409 57.143 0.00 0.00 0.00 4.81
1329 1724 2.424733 GGCCTCGAGTACCTGGACC 61.425 68.421 12.31 0.00 0.00 4.46
1515 1910 1.995484 GCCCGAAAAGAAGGTACGTAC 59.005 52.381 17.56 17.56 0.00 3.67
1518 1913 4.415735 CCCGAAAAGAAGGTACGTACTAC 58.584 47.826 24.07 15.21 0.00 2.73
1519 1914 4.156739 CCCGAAAAGAAGGTACGTACTACT 59.843 45.833 24.07 16.95 0.00 2.57
1520 1915 5.354234 CCCGAAAAGAAGGTACGTACTACTA 59.646 44.000 24.07 0.00 0.00 1.82
1521 1916 6.038714 CCCGAAAAGAAGGTACGTACTACTAT 59.961 42.308 24.07 12.95 0.00 2.12
1522 1917 7.226720 CCCGAAAAGAAGGTACGTACTACTATA 59.773 40.741 24.07 0.00 0.00 1.31
1625 2020 3.099905 TGATTTTGTTTGGTGGTGGTGA 58.900 40.909 0.00 0.00 0.00 4.02
1632 2027 2.676471 GGTGGTGGTGATGGTGGC 60.676 66.667 0.00 0.00 0.00 5.01
1747 2148 1.247567 ACGGTCAAAAGCCCATCAAG 58.752 50.000 0.00 0.00 0.00 3.02
1779 2180 7.606349 CCTTATCCCCGGTAATTAACTACTAC 58.394 42.308 0.00 0.00 0.00 2.73
1805 2206 4.733542 CCACCGGCCCGTTTCCAT 62.734 66.667 0.00 0.00 0.00 3.41
1837 2238 0.658368 TCTCGTCGATGCACTAGCTC 59.342 55.000 0.00 0.00 42.74 4.09
1838 2239 0.317436 CTCGTCGATGCACTAGCTCC 60.317 60.000 0.00 0.00 42.74 4.70
1839 2240 1.299468 CGTCGATGCACTAGCTCCC 60.299 63.158 0.00 0.00 42.74 4.30
1859 2268 2.031012 CCGTGCACAGCCTTGAGA 59.969 61.111 18.64 0.00 0.00 3.27
1915 2344 7.009568 AGATTCGCAATAACTGATTTCTCAC 57.990 36.000 0.00 0.00 0.00 3.51
1961 2390 4.898265 TCATCAAACCTTTGGTCATTTGGA 59.102 37.500 0.00 0.00 38.66 3.53
1962 2391 5.543405 TCATCAAACCTTTGGTCATTTGGAT 59.457 36.000 0.00 0.00 38.66 3.41
1963 2392 6.723515 TCATCAAACCTTTGGTCATTTGGATA 59.276 34.615 0.00 0.00 38.66 2.59
1964 2393 7.399765 TCATCAAACCTTTGGTCATTTGGATAT 59.600 33.333 0.00 0.00 38.66 1.63
2052 2485 2.135933 GAGTAGATTTTAGCCGCGCAT 58.864 47.619 8.75 0.00 0.00 4.73
2058 2491 1.581727 TTTTAGCCGCGCATCTTGCA 61.582 50.000 8.75 0.00 45.36 4.08
2060 2493 1.375853 TTAGCCGCGCATCTTGCAAT 61.376 50.000 8.75 0.00 45.36 3.56
2063 2496 1.992947 CCGCGCATCTTGCAATTTG 59.007 52.632 8.75 1.69 45.36 2.32
2065 2498 1.711500 GCGCATCTTGCAATTTGGC 59.289 52.632 0.30 0.83 45.36 4.52
2066 2499 1.015085 GCGCATCTTGCAATTTGGCA 61.015 50.000 0.30 0.00 45.36 4.92
2067 2500 1.647346 CGCATCTTGCAATTTGGCAT 58.353 45.000 0.00 0.00 45.36 4.40
2068 2501 2.811855 CGCATCTTGCAATTTGGCATA 58.188 42.857 0.00 0.00 45.36 3.14
2069 2502 3.188492 CGCATCTTGCAATTTGGCATAA 58.812 40.909 0.00 0.00 45.36 1.90
2070 2503 3.244345 CGCATCTTGCAATTTGGCATAAG 59.756 43.478 0.00 0.00 45.36 1.73
2074 2510 6.348704 GCATCTTGCAATTTGGCATAAGTTTT 60.349 34.615 0.00 0.00 44.48 2.43
2076 2512 5.469421 TCTTGCAATTTGGCATAAGTTTTGG 59.531 36.000 0.00 0.00 44.48 3.28
2078 2514 3.119884 GCAATTTGGCATAAGTTTTGGCC 60.120 43.478 15.50 10.43 46.58 5.36
2086 2522 3.669557 GCATAAGTTTTGGCCACTACACG 60.670 47.826 3.88 0.00 0.00 4.49
2087 2523 2.047002 AAGTTTTGGCCACTACACGT 57.953 45.000 3.88 0.00 0.00 4.49
2702 3171 1.561643 TTTTTGCCCCTGTGTTCACA 58.438 45.000 5.52 5.52 0.00 3.58
2796 3266 5.419788 TGATCCCTCTCAACAAAATTGATGG 59.580 40.000 0.00 0.00 32.54 3.51
2806 3276 8.821147 TCAACAAAATTGATGGAAGATTTCTG 57.179 30.769 0.00 0.00 32.54 3.02
2821 3291 4.961730 AGATTTCTGATGTAGCTCCAGTCT 59.038 41.667 0.00 0.00 0.00 3.24
2822 3292 5.424895 AGATTTCTGATGTAGCTCCAGTCTT 59.575 40.000 0.00 0.00 0.00 3.01
2823 3293 4.462508 TTCTGATGTAGCTCCAGTCTTG 57.537 45.455 0.00 0.00 0.00 3.02
2824 3294 3.435275 TCTGATGTAGCTCCAGTCTTGT 58.565 45.455 0.00 0.00 0.00 3.16
2825 3295 4.600062 TCTGATGTAGCTCCAGTCTTGTA 58.400 43.478 0.00 0.00 0.00 2.41
2826 3296 5.204292 TCTGATGTAGCTCCAGTCTTGTAT 58.796 41.667 0.00 0.00 0.00 2.29
2827 3297 6.365520 TCTGATGTAGCTCCAGTCTTGTATA 58.634 40.000 0.00 0.00 0.00 1.47
2828 3298 7.007116 TCTGATGTAGCTCCAGTCTTGTATAT 58.993 38.462 0.00 0.00 0.00 0.86
2829 3299 8.164070 TCTGATGTAGCTCCAGTCTTGTATATA 58.836 37.037 0.00 0.00 0.00 0.86
2830 3300 8.112016 TGATGTAGCTCCAGTCTTGTATATAC 57.888 38.462 5.89 5.89 0.00 1.47
2831 3301 7.724061 TGATGTAGCTCCAGTCTTGTATATACA 59.276 37.037 11.62 11.62 0.00 2.29
2832 3302 8.657387 ATGTAGCTCCAGTCTTGTATATACAT 57.343 34.615 16.16 0.00 35.89 2.29
2833 3303 9.755122 ATGTAGCTCCAGTCTTGTATATACATA 57.245 33.333 16.16 5.49 35.89 2.29
2834 3304 9.755122 TGTAGCTCCAGTCTTGTATATACATAT 57.245 33.333 16.16 0.81 35.89 1.78
2841 3311 9.464714 CCAGTCTTGTATATACATATAATCGCC 57.535 37.037 16.16 0.00 35.89 5.54
2842 3312 9.170584 CAGTCTTGTATATACATATAATCGCCG 57.829 37.037 16.16 0.00 35.89 6.46
2843 3313 9.117183 AGTCTTGTATATACATATAATCGCCGA 57.883 33.333 16.16 0.00 35.89 5.54
2844 3314 9.383462 GTCTTGTATATACATATAATCGCCGAG 57.617 37.037 16.16 6.45 35.89 4.63
2845 3315 8.074370 TCTTGTATATACATATAATCGCCGAGC 58.926 37.037 16.16 0.00 35.89 5.03
2846 3316 6.675026 TGTATATACATATAATCGCCGAGCC 58.325 40.000 11.62 0.00 0.00 4.70
2847 3317 5.784578 ATATACATATAATCGCCGAGCCA 57.215 39.130 0.00 0.00 0.00 4.75
2848 3318 2.831685 ACATATAATCGCCGAGCCAA 57.168 45.000 0.00 0.00 0.00 4.52
2849 3319 2.413837 ACATATAATCGCCGAGCCAAC 58.586 47.619 0.00 0.00 0.00 3.77
2850 3320 2.224185 ACATATAATCGCCGAGCCAACA 60.224 45.455 0.00 0.00 0.00 3.33
2851 3321 2.148916 TATAATCGCCGAGCCAACAG 57.851 50.000 0.00 0.00 0.00 3.16
2852 3322 1.160329 ATAATCGCCGAGCCAACAGC 61.160 55.000 0.00 0.00 44.25 4.40
2865 3335 4.626081 ACAGCGGCTCAGCGGTTT 62.626 61.111 0.00 0.00 42.55 3.27
2866 3336 4.093952 CAGCGGCTCAGCGGTTTG 62.094 66.667 0.00 1.63 43.00 2.93
2876 3346 4.637771 GCGGTTTGCCTGGTAGAT 57.362 55.556 0.00 0.00 37.76 1.98
2877 3347 2.394604 GCGGTTTGCCTGGTAGATC 58.605 57.895 0.00 0.00 37.76 2.75
2878 3348 0.392461 GCGGTTTGCCTGGTAGATCA 60.392 55.000 0.00 0.00 37.76 2.92
2879 3349 1.747206 GCGGTTTGCCTGGTAGATCAT 60.747 52.381 0.00 0.00 37.76 2.45
2880 3350 2.484770 GCGGTTTGCCTGGTAGATCATA 60.485 50.000 0.00 0.00 37.76 2.15
2881 3351 3.804036 CGGTTTGCCTGGTAGATCATAA 58.196 45.455 0.00 0.00 0.00 1.90
2882 3352 3.809832 CGGTTTGCCTGGTAGATCATAAG 59.190 47.826 0.00 0.00 0.00 1.73
2883 3353 4.137543 GGTTTGCCTGGTAGATCATAAGG 58.862 47.826 0.00 0.00 0.00 2.69
2884 3354 4.385310 GGTTTGCCTGGTAGATCATAAGGT 60.385 45.833 0.00 0.00 0.00 3.50
2885 3355 4.689612 TTGCCTGGTAGATCATAAGGTC 57.310 45.455 0.00 0.00 0.00 3.85
2886 3356 3.928754 TGCCTGGTAGATCATAAGGTCT 58.071 45.455 0.00 0.00 0.00 3.85
2887 3357 3.898123 TGCCTGGTAGATCATAAGGTCTC 59.102 47.826 0.00 0.00 0.00 3.36
2888 3358 3.057174 GCCTGGTAGATCATAAGGTCTCG 60.057 52.174 0.00 0.00 0.00 4.04
2889 3359 3.508012 CCTGGTAGATCATAAGGTCTCGG 59.492 52.174 0.00 0.00 0.00 4.63
2890 3360 4.145807 CTGGTAGATCATAAGGTCTCGGT 58.854 47.826 0.00 0.00 0.00 4.69
2891 3361 5.314529 CTGGTAGATCATAAGGTCTCGGTA 58.685 45.833 0.00 0.00 0.00 4.02
2892 3362 5.698104 TGGTAGATCATAAGGTCTCGGTAA 58.302 41.667 0.00 0.00 0.00 2.85
2893 3363 6.131264 TGGTAGATCATAAGGTCTCGGTAAA 58.869 40.000 0.00 0.00 0.00 2.01
2894 3364 6.781014 TGGTAGATCATAAGGTCTCGGTAAAT 59.219 38.462 0.00 0.00 0.00 1.40
2895 3365 7.039923 TGGTAGATCATAAGGTCTCGGTAAATC 60.040 40.741 0.00 0.00 0.00 2.17
2896 3366 6.015027 AGATCATAAGGTCTCGGTAAATCG 57.985 41.667 0.00 0.00 0.00 3.34
2897 3367 5.535406 AGATCATAAGGTCTCGGTAAATCGT 59.465 40.000 0.00 0.00 0.00 3.73
2898 3368 5.587388 TCATAAGGTCTCGGTAAATCGTT 57.413 39.130 0.00 0.00 0.00 3.85
2899 3369 5.969423 TCATAAGGTCTCGGTAAATCGTTT 58.031 37.500 0.00 0.00 0.00 3.60
2900 3370 6.400568 TCATAAGGTCTCGGTAAATCGTTTT 58.599 36.000 0.00 0.00 0.00 2.43
2901 3371 6.311935 TCATAAGGTCTCGGTAAATCGTTTTG 59.688 38.462 1.69 0.00 0.00 2.44
2902 3372 4.261578 AGGTCTCGGTAAATCGTTTTGA 57.738 40.909 1.69 0.00 0.00 2.69
2903 3373 4.828829 AGGTCTCGGTAAATCGTTTTGAT 58.171 39.130 1.69 0.00 39.67 2.57
2904 3374 4.630069 AGGTCTCGGTAAATCGTTTTGATG 59.370 41.667 1.69 0.00 37.39 3.07
2905 3375 4.390909 GGTCTCGGTAAATCGTTTTGATGT 59.609 41.667 1.69 0.00 37.39 3.06
2906 3376 5.313623 GTCTCGGTAAATCGTTTTGATGTG 58.686 41.667 1.69 0.00 37.39 3.21
2907 3377 4.073169 TCGGTAAATCGTTTTGATGTGC 57.927 40.909 1.69 0.00 37.39 4.57
2908 3378 2.837878 CGGTAAATCGTTTTGATGTGCG 59.162 45.455 1.69 0.00 37.39 5.34
2909 3379 3.665848 CGGTAAATCGTTTTGATGTGCGT 60.666 43.478 1.69 0.00 37.39 5.24
2910 3380 4.223659 GGTAAATCGTTTTGATGTGCGTT 58.776 39.130 1.69 0.00 37.39 4.84
2911 3381 4.677832 GGTAAATCGTTTTGATGTGCGTTT 59.322 37.500 1.69 0.00 37.39 3.60
2912 3382 4.947077 AAATCGTTTTGATGTGCGTTTC 57.053 36.364 0.00 0.00 37.39 2.78
2913 3383 2.011932 TCGTTTTGATGTGCGTTTCG 57.988 45.000 0.00 0.00 0.00 3.46
2914 3384 3.223280 ATCGTTTTGATGTGCGTTTCGC 61.223 45.455 7.20 7.20 44.32 4.70
2924 3394 2.324477 CGTTTCGCGCATGATCCC 59.676 61.111 8.75 0.00 0.00 3.85
2925 3395 2.173669 CGTTTCGCGCATGATCCCT 61.174 57.895 8.75 0.00 0.00 4.20
2926 3396 1.643832 GTTTCGCGCATGATCCCTC 59.356 57.895 8.75 0.00 0.00 4.30
2927 3397 0.811616 GTTTCGCGCATGATCCCTCT 60.812 55.000 8.75 0.00 0.00 3.69
2928 3398 0.530650 TTTCGCGCATGATCCCTCTC 60.531 55.000 8.75 0.00 0.00 3.20
2929 3399 1.675720 TTCGCGCATGATCCCTCTCA 61.676 55.000 8.75 0.00 0.00 3.27
2930 3400 1.664017 CGCGCATGATCCCTCTCAG 60.664 63.158 8.75 0.00 0.00 3.35
2931 3401 1.960250 GCGCATGATCCCTCTCAGC 60.960 63.158 0.30 0.00 0.00 4.26
2932 3402 1.664017 CGCATGATCCCTCTCAGCG 60.664 63.158 0.00 0.00 36.88 5.18
2933 3403 1.301558 GCATGATCCCTCTCAGCGG 60.302 63.158 0.00 0.00 0.00 5.52
2934 3404 2.037620 GCATGATCCCTCTCAGCGGT 62.038 60.000 0.00 0.00 0.00 5.68
2935 3405 0.467384 CATGATCCCTCTCAGCGGTT 59.533 55.000 0.00 0.00 0.00 4.44
2949 3419 0.997196 GCGGTTTGCCTACTAACGAG 59.003 55.000 0.00 0.00 37.76 4.18
2952 3422 3.736126 GCGGTTTGCCTACTAACGAGTAT 60.736 47.826 0.00 0.00 37.53 2.12
2954 3424 4.266976 CGGTTTGCCTACTAACGAGTATTG 59.733 45.833 0.00 0.00 37.53 1.90
2955 3425 5.413499 GGTTTGCCTACTAACGAGTATTGA 58.587 41.667 0.00 0.00 37.53 2.57
2956 3426 5.519206 GGTTTGCCTACTAACGAGTATTGAG 59.481 44.000 0.00 0.00 37.53 3.02
2958 3442 5.909621 TGCCTACTAACGAGTATTGAGTT 57.090 39.130 0.00 0.00 37.53 3.01
2970 3454 8.606727 ACGAGTATTGAGTTTATACACGTAAC 57.393 34.615 13.84 0.00 46.37 2.50
2972 3456 8.941923 CGAGTATTGAGTTTATACACGTAACTC 58.058 37.037 17.40 17.40 44.97 3.01
2977 3461 6.882458 GAGTTTATACACGTAACTCAAGGG 57.118 41.667 18.73 0.00 44.43 3.95
2987 3471 1.999648 AACTCAAGGGCATCAAAGCA 58.000 45.000 0.00 0.00 35.83 3.91
2990 3474 2.901839 ACTCAAGGGCATCAAAGCATTT 59.098 40.909 0.00 0.00 40.26 2.32
3001 3485 0.749649 AAAGCATTTGACCACGCCAA 59.250 45.000 0.00 0.00 36.60 4.52
3002 3486 0.749649 AAGCATTTGACCACGCCAAA 59.250 45.000 0.00 0.00 37.82 3.28
3004 3488 0.943835 GCATTTGACCACGCCAAACC 60.944 55.000 0.00 0.00 36.48 3.27
3044 7313 1.816074 TGCATCCAACGAAAGGTACC 58.184 50.000 2.73 2.73 0.00 3.34
3127 7396 3.722082 CGAAAGTGATTCCGCTCTTTTCG 60.722 47.826 2.68 2.68 37.01 3.46
3129 7398 0.097150 GTGATTCCGCTCTTTTCGCC 59.903 55.000 0.00 0.00 0.00 5.54
3150 7419 5.437060 GCCCATAAGGAAATTCTGTGACTA 58.563 41.667 0.00 0.00 38.24 2.59
3151 7420 5.885912 GCCCATAAGGAAATTCTGTGACTAA 59.114 40.000 0.00 0.00 38.24 2.24
3152 7421 6.038714 GCCCATAAGGAAATTCTGTGACTAAG 59.961 42.308 0.00 0.00 38.24 2.18
3176 7445 7.272978 AGTAACTGCTAACTTTCTGAGACAAA 58.727 34.615 0.00 0.00 0.00 2.83
3187 7456 6.713903 ACTTTCTGAGACAAACACATCATCAT 59.286 34.615 0.00 0.00 0.00 2.45
3188 7457 7.230108 ACTTTCTGAGACAAACACATCATCATT 59.770 33.333 0.00 0.00 0.00 2.57
3202 7473 8.896744 ACACATCATCATTAAATTTCACGATCT 58.103 29.630 0.00 0.00 0.00 2.75
3465 7737 2.997303 CACACAATAATCCGACCGACAA 59.003 45.455 0.00 0.00 0.00 3.18
3686 7958 7.933215 TGTTCAGACAGCAAGTAGTAGTATA 57.067 36.000 0.00 0.00 0.00 1.47
3687 7959 8.521170 TGTTCAGACAGCAAGTAGTAGTATAT 57.479 34.615 0.00 0.00 0.00 0.86
3850 8127 6.293516 GGAAAAATTTGTTCAATGCAGCATCA 60.294 34.615 8.77 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.094730 GCGTTGAATGACAGGTACGC 59.905 55.000 0.00 0.00 44.66 4.42
63 64 2.753009 TAAGTGTGCCTGCCTGCCTG 62.753 60.000 0.00 0.00 0.00 4.85
64 65 2.475371 CTAAGTGTGCCTGCCTGCCT 62.475 60.000 0.00 0.00 0.00 4.75
65 66 2.034066 TAAGTGTGCCTGCCTGCC 59.966 61.111 0.00 0.00 0.00 4.85
66 67 0.890996 AACTAAGTGTGCCTGCCTGC 60.891 55.000 0.00 0.00 0.00 4.85
67 68 2.472695 TAACTAAGTGTGCCTGCCTG 57.527 50.000 0.00 0.00 0.00 4.85
68 69 2.092914 GGATAACTAAGTGTGCCTGCCT 60.093 50.000 0.00 0.00 0.00 4.75
105 439 2.100410 GCATCACGAGAGCGACGA 59.900 61.111 0.00 0.00 41.64 4.20
107 441 0.790207 TTTTGCATCACGAGAGCGAC 59.210 50.000 0.00 0.00 41.64 5.19
154 488 3.521529 CTCCGCTCGGCCCCATTAG 62.522 68.421 2.96 0.00 34.68 1.73
469 821 0.540923 CAAAGGGCAGAGAGAGGGAG 59.459 60.000 0.00 0.00 0.00 4.30
470 822 0.117140 TCAAAGGGCAGAGAGAGGGA 59.883 55.000 0.00 0.00 0.00 4.20
471 823 0.251634 GTCAAAGGGCAGAGAGAGGG 59.748 60.000 0.00 0.00 0.00 4.30
472 824 0.979665 TGTCAAAGGGCAGAGAGAGG 59.020 55.000 0.00 0.00 0.00 3.69
571 923 2.159324 GCTTGCTTGACTCTTTATGCCC 60.159 50.000 0.00 0.00 0.00 5.36
593 945 4.215827 TGGAAGCCGCGAATTAACTTTAAA 59.784 37.500 8.23 0.00 0.00 1.52
594 946 3.752222 TGGAAGCCGCGAATTAACTTTAA 59.248 39.130 8.23 0.00 0.00 1.52
595 947 3.336468 TGGAAGCCGCGAATTAACTTTA 58.664 40.909 8.23 0.00 0.00 1.85
629 981 1.714899 CGTCATTAAAGGGGCCGCAG 61.715 60.000 23.39 4.45 0.00 5.18
630 982 1.747367 CGTCATTAAAGGGGCCGCA 60.747 57.895 23.39 0.43 0.00 5.69
761 1117 4.514441 GCTCTATGCTATGCACTTGTCAAT 59.486 41.667 0.00 0.00 43.04 2.57
810 1168 4.497006 GGATTTGAAATGATCAGCCACTCG 60.497 45.833 0.09 0.00 39.77 4.18
849 1207 0.533755 CTTCGCAGCAGGGGATAAGG 60.534 60.000 0.00 0.00 38.38 2.69
920 1287 2.997315 TCTGGAGTGGCACGAGGG 60.997 66.667 12.71 4.78 0.00 4.30
937 1304 1.747709 ACATACTCCAGACGCGTACT 58.252 50.000 13.97 8.73 0.00 2.73
1306 1701 1.817099 AGGTACTCGAGGCCGTACG 60.817 63.158 18.41 8.69 37.46 3.67
1316 1711 1.033574 GATCCAGGTCCAGGTACTCG 58.966 60.000 0.00 0.00 34.60 4.18
1329 1724 0.622665 AGGAAGGGCTTGTGATCCAG 59.377 55.000 0.00 0.00 32.47 3.86
1388 1783 1.946156 CATCATCTCGTGGCGGTCG 60.946 63.158 0.00 0.00 0.00 4.79
1519 1914 9.938280 GGTGCACAAATCAACTATAGGTATATA 57.062 33.333 20.43 0.00 0.00 0.86
1520 1915 7.883311 GGGTGCACAAATCAACTATAGGTATAT 59.117 37.037 20.43 0.00 0.00 0.86
1521 1916 7.221450 GGGTGCACAAATCAACTATAGGTATA 58.779 38.462 20.43 0.00 0.00 1.47
1522 1917 6.062095 GGGTGCACAAATCAACTATAGGTAT 58.938 40.000 20.43 0.00 0.00 2.73
1527 1922 3.275143 CCGGGTGCACAAATCAACTATA 58.725 45.455 20.43 0.00 0.00 1.31
1528 1923 2.091541 CCGGGTGCACAAATCAACTAT 58.908 47.619 20.43 0.00 0.00 2.12
1529 1924 1.529226 CCGGGTGCACAAATCAACTA 58.471 50.000 20.43 0.00 0.00 2.24
1632 2027 2.433145 TCTTCTTGCTGCTCGCCG 60.433 61.111 0.00 0.00 38.05 6.46
1635 2030 1.360194 CTGGCTCTTCTTGCTGCTCG 61.360 60.000 0.00 0.00 0.00 5.03
1747 2148 4.315941 CGGGGATAAGGCGAGCCC 62.316 72.222 10.95 7.19 45.00 5.19
1779 2180 2.983592 GGCCGGTGGAAGTGGTTG 60.984 66.667 1.90 0.00 0.00 3.77
1805 2206 0.110509 GACGAGACGACAGTAACGCA 60.111 55.000 0.00 0.00 34.23 5.24
1859 2268 2.363683 GTACTAGCGGTAGTGACTGGT 58.636 52.381 31.93 11.00 44.81 4.00
1915 2344 4.857871 ATCCGTGTAAATGTTCATCGTG 57.142 40.909 0.00 0.00 0.00 4.35
1994 2423 4.501571 GCACCAGGTCATATGTACTACCAG 60.502 50.000 12.47 5.65 34.29 4.00
1996 2425 3.641906 AGCACCAGGTCATATGTACTACC 59.358 47.826 1.90 2.88 0.00 3.18
2000 2429 5.531122 TCTAAGCACCAGGTCATATGTAC 57.469 43.478 1.90 0.00 0.00 2.90
2001 2430 5.661312 AGTTCTAAGCACCAGGTCATATGTA 59.339 40.000 1.90 0.00 0.00 2.29
2002 2431 4.471386 AGTTCTAAGCACCAGGTCATATGT 59.529 41.667 1.90 0.00 0.00 2.29
2003 2432 5.028549 AGTTCTAAGCACCAGGTCATATG 57.971 43.478 0.00 0.00 0.00 1.78
2052 2485 5.469421 CCAAAACTTATGCCAAATTGCAAGA 59.531 36.000 4.94 0.00 45.84 3.02
2063 2496 2.823154 TGTAGTGGCCAAAACTTATGCC 59.177 45.455 7.24 0.00 44.27 4.40
2065 2498 3.500680 ACGTGTAGTGGCCAAAACTTATG 59.499 43.478 7.24 1.93 0.00 1.90
2066 2499 3.746940 ACGTGTAGTGGCCAAAACTTAT 58.253 40.909 7.24 0.00 0.00 1.73
2067 2500 3.132925 GACGTGTAGTGGCCAAAACTTA 58.867 45.455 7.24 0.00 0.00 2.24
2068 2501 1.944709 GACGTGTAGTGGCCAAAACTT 59.055 47.619 7.24 0.00 0.00 2.66
2069 2502 1.134340 TGACGTGTAGTGGCCAAAACT 60.134 47.619 7.24 2.51 0.00 2.66
2070 2503 1.003223 GTGACGTGTAGTGGCCAAAAC 60.003 52.381 7.24 9.71 0.00 2.43
2074 2510 0.320334 CATGTGACGTGTAGTGGCCA 60.320 55.000 0.00 0.00 0.00 5.36
2076 2512 1.990563 GTACATGTGACGTGTAGTGGC 59.009 52.381 17.27 3.06 33.08 5.01
2078 2514 5.666203 CAAAAGTACATGTGACGTGTAGTG 58.334 41.667 22.08 12.54 36.21 2.74
2081 2517 4.120589 TGCAAAAGTACATGTGACGTGTA 58.879 39.130 13.28 13.28 0.00 2.90
2178 2647 3.380004 TGTGACCACAAAGCTAACAAAGG 59.620 43.478 0.00 0.00 38.56 3.11
2385 2854 3.360340 GTCGTGGTCGTCGTCCCT 61.360 66.667 6.05 0.00 38.33 4.20
2386 2855 4.748679 CGTCGTGGTCGTCGTCCC 62.749 72.222 6.05 1.69 41.73 4.46
2702 3171 1.843851 TGACCCCTCCTTCGCAAATAT 59.156 47.619 0.00 0.00 0.00 1.28
2796 3266 5.669477 ACTGGAGCTACATCAGAAATCTTC 58.331 41.667 0.00 0.00 33.19 2.87
2806 3276 8.112016 TGTATATACAAGACTGGAGCTACATC 57.888 38.462 13.24 0.00 32.40 3.06
2821 3291 7.143340 GGCTCGGCGATTATATGTATATACAA 58.857 38.462 19.11 9.40 39.99 2.41
2822 3292 6.263617 TGGCTCGGCGATTATATGTATATACA 59.736 38.462 17.65 17.65 40.98 2.29
2823 3293 6.675026 TGGCTCGGCGATTATATGTATATAC 58.325 40.000 11.27 5.89 0.00 1.47
2824 3294 6.887626 TGGCTCGGCGATTATATGTATATA 57.112 37.500 11.27 0.00 0.00 0.86
2825 3295 5.784578 TGGCTCGGCGATTATATGTATAT 57.215 39.130 11.27 0.00 0.00 0.86
2826 3296 5.105675 TGTTGGCTCGGCGATTATATGTATA 60.106 40.000 11.27 0.00 0.00 1.47
2827 3297 4.181578 GTTGGCTCGGCGATTATATGTAT 58.818 43.478 11.27 0.00 0.00 2.29
2828 3298 3.006003 TGTTGGCTCGGCGATTATATGTA 59.994 43.478 11.27 0.00 0.00 2.29
2829 3299 2.224185 TGTTGGCTCGGCGATTATATGT 60.224 45.455 11.27 0.00 0.00 2.29
2830 3300 2.412870 TGTTGGCTCGGCGATTATATG 58.587 47.619 11.27 0.00 0.00 1.78
2831 3301 2.688507 CTGTTGGCTCGGCGATTATAT 58.311 47.619 11.27 0.00 0.00 0.86
2832 3302 1.872237 GCTGTTGGCTCGGCGATTATA 60.872 52.381 11.27 0.00 38.06 0.98
2833 3303 1.160329 GCTGTTGGCTCGGCGATTAT 61.160 55.000 11.27 0.00 38.06 1.28
2834 3304 1.813753 GCTGTTGGCTCGGCGATTA 60.814 57.895 11.27 0.00 38.06 1.75
2835 3305 3.127533 GCTGTTGGCTCGGCGATT 61.128 61.111 11.27 0.00 38.06 3.34
2847 3317 4.626081 AACCGCTGAGCCGCTGTT 62.626 61.111 0.00 0.00 33.41 3.16
2848 3318 4.626081 AAACCGCTGAGCCGCTGT 62.626 61.111 0.00 0.00 0.00 4.40
2849 3319 4.093952 CAAACCGCTGAGCCGCTG 62.094 66.667 0.00 0.00 0.00 5.18
2854 3324 3.741476 CCAGGCAAACCGCTGAGC 61.741 66.667 0.00 0.00 42.76 4.26
2855 3325 1.003839 TACCAGGCAAACCGCTGAG 60.004 57.895 0.00 0.00 42.76 3.35
2856 3326 1.003839 CTACCAGGCAAACCGCTGA 60.004 57.895 0.00 0.00 42.76 4.26
2857 3327 0.392998 ATCTACCAGGCAAACCGCTG 60.393 55.000 0.00 0.00 42.76 5.18
2858 3328 0.107654 GATCTACCAGGCAAACCGCT 60.108 55.000 0.00 0.00 42.76 5.52
2859 3329 0.392461 TGATCTACCAGGCAAACCGC 60.392 55.000 0.00 0.00 42.76 5.68
2860 3330 2.332063 ATGATCTACCAGGCAAACCG 57.668 50.000 0.00 0.00 42.76 4.44
2861 3331 4.137543 CCTTATGATCTACCAGGCAAACC 58.862 47.826 0.00 0.00 0.00 3.27
2862 3332 4.781934 ACCTTATGATCTACCAGGCAAAC 58.218 43.478 0.00 0.00 0.00 2.93
2863 3333 4.721776 AGACCTTATGATCTACCAGGCAAA 59.278 41.667 0.00 0.00 0.00 3.68
2864 3334 4.298626 AGACCTTATGATCTACCAGGCAA 58.701 43.478 0.00 0.00 0.00 4.52
2865 3335 3.898123 GAGACCTTATGATCTACCAGGCA 59.102 47.826 0.00 0.00 0.00 4.75
2866 3336 3.057174 CGAGACCTTATGATCTACCAGGC 60.057 52.174 0.00 0.00 0.00 4.85
2867 3337 3.508012 CCGAGACCTTATGATCTACCAGG 59.492 52.174 0.00 0.00 0.00 4.45
2868 3338 4.145807 ACCGAGACCTTATGATCTACCAG 58.854 47.826 0.00 0.00 0.00 4.00
2869 3339 4.180377 ACCGAGACCTTATGATCTACCA 57.820 45.455 0.00 0.00 0.00 3.25
2870 3340 6.645790 TTTACCGAGACCTTATGATCTACC 57.354 41.667 0.00 0.00 0.00 3.18
2871 3341 7.022384 CGATTTACCGAGACCTTATGATCTAC 58.978 42.308 0.00 0.00 0.00 2.59
2872 3342 6.713903 ACGATTTACCGAGACCTTATGATCTA 59.286 38.462 0.00 0.00 0.00 1.98
2873 3343 5.535406 ACGATTTACCGAGACCTTATGATCT 59.465 40.000 0.00 0.00 0.00 2.75
2874 3344 5.770417 ACGATTTACCGAGACCTTATGATC 58.230 41.667 0.00 0.00 0.00 2.92
2875 3345 5.786264 ACGATTTACCGAGACCTTATGAT 57.214 39.130 0.00 0.00 0.00 2.45
2876 3346 5.587388 AACGATTTACCGAGACCTTATGA 57.413 39.130 0.00 0.00 0.00 2.15
2877 3347 6.311935 TCAAAACGATTTACCGAGACCTTATG 59.688 38.462 0.00 0.00 0.00 1.90
2878 3348 6.400568 TCAAAACGATTTACCGAGACCTTAT 58.599 36.000 0.00 0.00 0.00 1.73
2879 3349 5.782047 TCAAAACGATTTACCGAGACCTTA 58.218 37.500 0.00 0.00 0.00 2.69
2880 3350 4.634199 TCAAAACGATTTACCGAGACCTT 58.366 39.130 0.00 0.00 0.00 3.50
2881 3351 4.261578 TCAAAACGATTTACCGAGACCT 57.738 40.909 0.00 0.00 0.00 3.85
2882 3352 4.390909 ACATCAAAACGATTTACCGAGACC 59.609 41.667 0.00 0.00 29.21 3.85
2883 3353 5.313623 CACATCAAAACGATTTACCGAGAC 58.686 41.667 0.00 0.00 29.21 3.36
2884 3354 4.142988 GCACATCAAAACGATTTACCGAGA 60.143 41.667 0.00 0.00 29.21 4.04
2885 3355 4.088648 GCACATCAAAACGATTTACCGAG 58.911 43.478 0.00 0.00 29.21 4.63
2886 3356 3.423776 CGCACATCAAAACGATTTACCGA 60.424 43.478 0.00 0.00 29.21 4.69
2887 3357 2.837878 CGCACATCAAAACGATTTACCG 59.162 45.455 0.00 0.00 29.21 4.02
2888 3358 3.817238 ACGCACATCAAAACGATTTACC 58.183 40.909 0.00 0.00 29.21 2.85
2889 3359 5.439694 CGAAACGCACATCAAAACGATTTAC 60.440 40.000 0.00 0.00 29.21 2.01
2890 3360 4.609295 CGAAACGCACATCAAAACGATTTA 59.391 37.500 0.00 0.00 29.21 1.40
2891 3361 3.420576 CGAAACGCACATCAAAACGATTT 59.579 39.130 0.00 0.00 29.21 2.17
2892 3362 2.970609 CGAAACGCACATCAAAACGATT 59.029 40.909 0.00 0.00 29.21 3.34
2893 3363 2.570169 CGAAACGCACATCAAAACGAT 58.430 42.857 0.00 0.00 33.27 3.73
2894 3364 2.011932 CGAAACGCACATCAAAACGA 57.988 45.000 0.00 0.00 0.00 3.85
2908 3378 0.811616 AGAGGGATCATGCGCGAAAC 60.812 55.000 12.10 0.00 0.00 2.78
2909 3379 0.530650 GAGAGGGATCATGCGCGAAA 60.531 55.000 12.10 0.00 0.00 3.46
2910 3380 1.068083 GAGAGGGATCATGCGCGAA 59.932 57.895 12.10 0.00 0.00 4.70
2911 3381 2.080222 CTGAGAGGGATCATGCGCGA 62.080 60.000 12.10 0.00 0.00 5.87
2912 3382 1.664017 CTGAGAGGGATCATGCGCG 60.664 63.158 0.00 0.00 0.00 6.86
2913 3383 1.960250 GCTGAGAGGGATCATGCGC 60.960 63.158 0.00 0.00 0.00 6.09
2914 3384 1.664017 CGCTGAGAGGGATCATGCG 60.664 63.158 0.00 0.00 39.02 4.73
2915 3385 1.301558 CCGCTGAGAGGGATCATGC 60.302 63.158 0.00 0.00 0.00 4.06
2916 3386 0.467384 AACCGCTGAGAGGGATCATG 59.533 55.000 7.27 0.00 0.00 3.07
2917 3387 1.134280 CAAACCGCTGAGAGGGATCAT 60.134 52.381 7.27 0.00 0.00 2.45
2918 3388 0.250234 CAAACCGCTGAGAGGGATCA 59.750 55.000 7.27 0.00 0.00 2.92
2919 3389 1.092345 GCAAACCGCTGAGAGGGATC 61.092 60.000 7.27 0.00 37.77 3.36
2920 3390 1.078143 GCAAACCGCTGAGAGGGAT 60.078 57.895 7.27 0.00 37.77 3.85
2921 3391 2.347490 GCAAACCGCTGAGAGGGA 59.653 61.111 7.27 0.00 37.77 4.20
2922 3392 1.899437 TAGGCAAACCGCTGAGAGGG 61.899 60.000 7.27 0.00 42.76 4.30
2923 3393 0.741221 GTAGGCAAACCGCTGAGAGG 60.741 60.000 0.00 0.00 42.76 3.69
2924 3394 0.247736 AGTAGGCAAACCGCTGAGAG 59.752 55.000 0.00 0.00 42.76 3.20
2925 3395 1.552578 TAGTAGGCAAACCGCTGAGA 58.447 50.000 0.00 0.00 42.76 3.27
2926 3396 2.000447 GTTAGTAGGCAAACCGCTGAG 59.000 52.381 0.00 0.00 42.76 3.35
2927 3397 1.670674 CGTTAGTAGGCAAACCGCTGA 60.671 52.381 0.00 0.00 42.76 4.26
2928 3398 0.719465 CGTTAGTAGGCAAACCGCTG 59.281 55.000 0.00 0.00 42.76 5.18
2929 3399 0.604578 TCGTTAGTAGGCAAACCGCT 59.395 50.000 0.00 0.00 42.76 5.52
2930 3400 0.997196 CTCGTTAGTAGGCAAACCGC 59.003 55.000 0.00 0.00 42.76 5.68
2931 3401 2.358939 ACTCGTTAGTAGGCAAACCG 57.641 50.000 0.00 0.00 42.76 4.44
2932 3402 5.413499 TCAATACTCGTTAGTAGGCAAACC 58.587 41.667 0.00 0.00 41.46 3.27
2933 3403 6.098017 ACTCAATACTCGTTAGTAGGCAAAC 58.902 40.000 0.00 0.00 41.46 2.93
2934 3404 6.276832 ACTCAATACTCGTTAGTAGGCAAA 57.723 37.500 0.00 0.00 41.46 3.68
2935 3405 5.909621 ACTCAATACTCGTTAGTAGGCAA 57.090 39.130 0.00 0.00 41.46 4.52
2954 3424 5.290400 GCCCTTGAGTTACGTGTATAAACTC 59.710 44.000 17.40 17.40 45.99 3.01
2955 3425 5.173664 GCCCTTGAGTTACGTGTATAAACT 58.826 41.667 0.00 0.00 36.20 2.66
2956 3426 4.931002 TGCCCTTGAGTTACGTGTATAAAC 59.069 41.667 0.00 0.00 0.00 2.01
2958 3442 4.804868 TGCCCTTGAGTTACGTGTATAA 57.195 40.909 0.00 0.00 0.00 0.98
2965 3449 2.159517 GCTTTGATGCCCTTGAGTTACG 60.160 50.000 0.00 0.00 0.00 3.18
2970 3454 3.056393 TCAAATGCTTTGATGCCCTTGAG 60.056 43.478 7.09 0.00 44.21 3.02
2972 3456 3.322211 TCAAATGCTTTGATGCCCTTG 57.678 42.857 7.09 0.00 44.21 3.61
2987 3471 0.673437 CTGGTTTGGCGTGGTCAAAT 59.327 50.000 0.00 0.00 39.34 2.32
2990 3474 0.180642 TTACTGGTTTGGCGTGGTCA 59.819 50.000 0.00 0.00 0.00 4.02
2991 3475 0.872388 CTTACTGGTTTGGCGTGGTC 59.128 55.000 0.00 0.00 0.00 4.02
2992 3476 0.470766 TCTTACTGGTTTGGCGTGGT 59.529 50.000 0.00 0.00 0.00 4.16
2994 3478 2.218603 AGTTCTTACTGGTTTGGCGTG 58.781 47.619 0.00 0.00 31.99 5.34
2995 3479 2.490991 GAGTTCTTACTGGTTTGGCGT 58.509 47.619 0.00 0.00 33.84 5.68
2996 3480 1.804748 GGAGTTCTTACTGGTTTGGCG 59.195 52.381 0.00 0.00 33.84 5.69
2997 3481 2.552743 GTGGAGTTCTTACTGGTTTGGC 59.447 50.000 0.00 0.00 33.84 4.52
2999 3483 4.086706 AGGTGGAGTTCTTACTGGTTTG 57.913 45.455 0.00 0.00 33.84 2.93
3001 3485 3.072622 GGAAGGTGGAGTTCTTACTGGTT 59.927 47.826 0.00 0.00 33.84 3.67
3002 3486 2.638363 GGAAGGTGGAGTTCTTACTGGT 59.362 50.000 0.00 0.00 33.84 4.00
3004 3488 4.256920 CATGGAAGGTGGAGTTCTTACTG 58.743 47.826 0.00 0.00 33.84 2.74
3044 7313 0.318360 TTATACCATCGTGAGCCGCG 60.318 55.000 0.00 0.00 38.82 6.46
3083 7352 2.829720 TGGTAGTGGAGCACGATTTACT 59.170 45.455 0.00 0.00 39.64 2.24
3108 7377 1.464997 GCGAAAAGAGCGGAATCACTT 59.535 47.619 0.00 0.00 0.00 3.16
3127 7396 4.273318 AGTCACAGAATTTCCTTATGGGC 58.727 43.478 0.00 0.00 29.25 5.36
3129 7398 9.667107 TTACTTAGTCACAGAATTTCCTTATGG 57.333 33.333 0.00 0.00 30.09 2.74
3150 7419 6.817184 TGTCTCAGAAAGTTAGCAGTTACTT 58.183 36.000 0.00 0.00 36.20 2.24
3151 7420 6.406692 TGTCTCAGAAAGTTAGCAGTTACT 57.593 37.500 0.00 0.00 0.00 2.24
3152 7421 7.011109 TGTTTGTCTCAGAAAGTTAGCAGTTAC 59.989 37.037 0.00 0.00 0.00 2.50
3176 7445 8.896744 AGATCGTGAAATTTAATGATGATGTGT 58.103 29.630 14.06 0.00 0.00 3.72
3686 7958 4.978099 ACAAAGGTCACAACTGAGATCAT 58.022 39.130 0.00 0.00 0.00 2.45
3687 7959 4.380531 GACAAAGGTCACAACTGAGATCA 58.619 43.478 0.00 0.00 43.73 2.92
3850 8127 5.478332 GGAGAAGGATGAAAAACTTGATGGT 59.522 40.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.