Multiple sequence alignment - TraesCS3A01G229100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G229100 chr3A 100.000 6370 0 0 1 6370 428800252 428793883 0.000000e+00 11764.0
1 TraesCS3A01G229100 chr3A 89.982 559 52 3 2 557 140012281 140012838 0.000000e+00 719.0
2 TraesCS3A01G229100 chr3A 89.209 556 55 4 5 557 102832769 102833322 0.000000e+00 689.0
3 TraesCS3A01G229100 chr3A 93.467 199 13 0 4953 5151 7919147 7919345 4.830000e-76 296.0
4 TraesCS3A01G229100 chr3A 92.574 202 14 1 4950 5151 52343153 52343353 8.080000e-74 289.0
5 TraesCS3A01G229100 chr3A 79.562 274 51 5 5911 6181 27292450 27292179 2.340000e-44 191.0
6 TraesCS3A01G229100 chr3A 82.192 219 30 6 5907 6117 736800254 736800037 5.070000e-41 180.0
7 TraesCS3A01G229100 chr3B 94.448 4467 163 26 554 4952 412244986 412249435 0.000000e+00 6796.0
8 TraesCS3A01G229100 chr3B 93.407 91 6 0 5152 5242 412249442 412249532 1.110000e-27 135.0
9 TraesCS3A01G229100 chr3B 91.045 67 6 0 490 556 133190979 133191045 2.450000e-14 91.6
10 TraesCS3A01G229100 chr3D 94.437 4440 162 30 595 4952 309087500 309083064 0.000000e+00 6752.0
11 TraesCS3A01G229100 chr3D 90.826 763 62 7 5149 5906 309083061 309082302 0.000000e+00 1014.0
12 TraesCS3A01G229100 chr3D 92.670 191 12 2 6181 6370 309082309 309082120 2.260000e-69 274.0
13 TraesCS3A01G229100 chr5D 90.143 558 50 3 2 556 319427375 319427930 0.000000e+00 721.0
14 TraesCS3A01G229100 chrUn 96.905 420 13 0 3659 4078 476921318 476921737 0.000000e+00 704.0
15 TraesCS3A01G229100 chrUn 87.647 510 57 6 2 507 15332939 15333446 7.110000e-164 588.0
16 TraesCS3A01G229100 chr7D 88.612 562 56 5 1 557 44657587 44657029 0.000000e+00 676.0
17 TraesCS3A01G229100 chr7A 88.129 556 62 3 2 554 119508443 119508997 0.000000e+00 658.0
18 TraesCS3A01G229100 chr7A 88.129 556 60 4 5 556 201967217 201966664 0.000000e+00 656.0
19 TraesCS3A01G229100 chr7A 92.195 205 13 3 4947 5151 69160771 69160972 2.910000e-73 287.0
20 TraesCS3A01G229100 chr7A 91.787 207 13 4 4947 5151 712611095 712611299 1.050000e-72 285.0
21 TraesCS3A01G229100 chr7A 85.882 170 22 2 5907 6075 660558611 660558779 5.070000e-41 180.0
22 TraesCS3A01G229100 chr7A 81.871 171 27 4 5907 6075 542711342 542711174 2.390000e-29 141.0
23 TraesCS3A01G229100 chr2D 87.299 559 58 11 2 554 166104662 166105213 1.510000e-175 627.0
24 TraesCS3A01G229100 chr6A 86.941 559 63 9 2 556 113540471 113541023 2.520000e-173 619.0
25 TraesCS3A01G229100 chr6A 92.079 202 15 1 4950 5151 564852239 564852439 3.760000e-72 283.0
26 TraesCS3A01G229100 chr6A 92.079 202 15 1 4950 5151 591127801 591128001 3.760000e-72 283.0
27 TraesCS3A01G229100 chr5A 93.137 204 14 0 4948 5151 37637152 37637355 3.730000e-77 300.0
28 TraesCS3A01G229100 chr5A 93.467 199 13 0 4953 5151 624607081 624607279 4.830000e-76 296.0
29 TraesCS3A01G229100 chr6B 92.965 199 14 0 4953 5151 402579911 402580109 2.250000e-74 291.0
30 TraesCS3A01G229100 chr6B 81.043 211 35 3 5907 6117 274061100 274061305 5.110000e-36 163.0
31 TraesCS3A01G229100 chr4A 84.706 170 19 3 5907 6075 467292824 467292661 5.110000e-36 163.0
32 TraesCS3A01G229100 chr2A 77.632 304 38 16 5904 6181 773857919 773858218 2.380000e-34 158.0
33 TraesCS3A01G229100 chr4D 80.583 206 30 6 5911 6111 7038715 7038915 3.980000e-32 150.0
34 TraesCS3A01G229100 chr5B 79.500 200 35 6 5916 6111 495825170 495824973 3.100000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G229100 chr3A 428793883 428800252 6369 True 11764.0 11764 100.000000 1 6370 1 chr3A.!!$R2 6369
1 TraesCS3A01G229100 chr3A 140012281 140012838 557 False 719.0 719 89.982000 2 557 1 chr3A.!!$F4 555
2 TraesCS3A01G229100 chr3A 102832769 102833322 553 False 689.0 689 89.209000 5 557 1 chr3A.!!$F3 552
3 TraesCS3A01G229100 chr3B 412244986 412249532 4546 False 3465.5 6796 93.927500 554 5242 2 chr3B.!!$F2 4688
4 TraesCS3A01G229100 chr3D 309082120 309087500 5380 True 2680.0 6752 92.644333 595 6370 3 chr3D.!!$R1 5775
5 TraesCS3A01G229100 chr5D 319427375 319427930 555 False 721.0 721 90.143000 2 556 1 chr5D.!!$F1 554
6 TraesCS3A01G229100 chrUn 15332939 15333446 507 False 588.0 588 87.647000 2 507 1 chrUn.!!$F1 505
7 TraesCS3A01G229100 chr7D 44657029 44657587 558 True 676.0 676 88.612000 1 557 1 chr7D.!!$R1 556
8 TraesCS3A01G229100 chr7A 119508443 119508997 554 False 658.0 658 88.129000 2 554 1 chr7A.!!$F2 552
9 TraesCS3A01G229100 chr7A 201966664 201967217 553 True 656.0 656 88.129000 5 556 1 chr7A.!!$R1 551
10 TraesCS3A01G229100 chr2D 166104662 166105213 551 False 627.0 627 87.299000 2 554 1 chr2D.!!$F1 552
11 TraesCS3A01G229100 chr6A 113540471 113541023 552 False 619.0 619 86.941000 2 556 1 chr6A.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
486 498 0.605319 GGGCATTTGTGTCCGTCAGA 60.605 55.000 0.00 0.0 0.00 3.27 F
1024 1047 0.749454 CTCCCCATTTCCTGCCTTCG 60.749 60.000 0.00 0.0 0.00 3.79 F
1823 1848 1.219124 CCACGCCATGTACTCTGCT 59.781 57.895 0.00 0.0 0.00 4.24 F
2691 2765 0.595053 ATCAGTTATCCGCGCACTCG 60.595 55.000 8.75 0.0 39.07 4.18 F
3321 3397 0.249868 CTGGTGCAAACGAGGAGTCA 60.250 55.000 0.00 0.0 0.00 3.41 F
4956 5058 0.109723 TCCGTAGCATATTTGGGGCC 59.890 55.000 0.00 0.0 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2199 2245 0.322975 ACAGCGGACTTGCTCATCTT 59.677 50.000 0.00 0.0 45.23 2.40 R
2635 2709 0.443869 CGTCCTCATCCAAAACAGCG 59.556 55.000 0.00 0.0 0.00 5.18 R
2827 2901 1.483415 GGAGCTATACCGGTTTGTCCA 59.517 52.381 15.04 0.0 35.57 4.02 R
4151 4243 0.033090 GGTACCACGGCTATACCTGC 59.967 60.000 7.15 0.0 36.26 4.85 R
5103 5205 0.106967 GAATCACCCTCCTTCCCAGC 60.107 60.000 0.00 0.0 0.00 4.85 R
6025 6131 0.107214 AACACATATGACTGGCCCGG 60.107 55.000 10.38 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 3.039588 GGCGTCGTTTTCGGCTGA 61.040 61.111 0.00 0.00 46.53 4.26
202 204 4.459331 CAACCCAACATCGCCGCG 62.459 66.667 6.39 6.39 0.00 6.46
208 210 4.435436 AACATCGCCGCGCTCTGA 62.435 61.111 8.21 0.00 0.00 3.27
307 311 4.789075 GGGCTGCGCGTCGTCTAA 62.789 66.667 8.43 0.00 0.00 2.10
317 323 4.084433 TGCGCGTCGTCTAATTTTTAGTTT 60.084 37.500 8.43 0.00 0.00 2.66
381 389 3.247442 GTGGCCGGCTTTTATGTTTAAC 58.753 45.455 28.56 4.81 0.00 2.01
463 475 2.538449 CTCGCGCCGATTTAAATACAGT 59.462 45.455 0.00 0.00 34.61 3.55
465 477 2.283086 CGCGCCGATTTAAATACAGTGA 59.717 45.455 0.00 0.00 0.00 3.41
484 496 1.963855 CGGGCATTTGTGTCCGTCA 60.964 57.895 12.88 0.00 37.92 4.35
486 498 0.605319 GGGCATTTGTGTCCGTCAGA 60.605 55.000 0.00 0.00 0.00 3.27
501 513 2.500229 GTCAGACCGACCCAAATGAAA 58.500 47.619 0.00 0.00 38.85 2.69
557 569 1.611519 CCGTTGGGGTTGCTCTAAAA 58.388 50.000 0.00 0.00 0.00 1.52
569 581 6.745116 GGTTGCTCTAAAACCATGTAAGTTT 58.255 36.000 0.50 0.00 45.41 2.66
576 588 9.965824 CTCTAAAACCATGTAAGTTTCATTTGT 57.034 29.630 0.00 0.00 36.44 2.83
589 601 6.061441 AGTTTCATTTGTCATAGTGTCCACA 58.939 36.000 0.00 0.00 0.00 4.17
590 602 6.716628 AGTTTCATTTGTCATAGTGTCCACAT 59.283 34.615 0.00 0.00 0.00 3.21
591 603 7.231317 AGTTTCATTTGTCATAGTGTCCACATT 59.769 33.333 0.00 0.00 0.00 2.71
601 613 2.958355 AGTGTCCACATTGGGAAAACTG 59.042 45.455 0.00 0.00 39.05 3.16
619 631 7.286775 GGAAAACTGGATTATGCACCCTATTAA 59.713 37.037 0.00 0.00 0.00 1.40
865 883 5.188751 TGGTTTCCACTCCAAATTCAAACTT 59.811 36.000 0.00 0.00 0.00 2.66
870 888 2.368548 ACTCCAAATTCAAACTTGGGGC 59.631 45.455 2.84 0.00 45.66 5.80
1024 1047 0.749454 CTCCCCATTTCCTGCCTTCG 60.749 60.000 0.00 0.00 0.00 3.79
1049 1072 3.957586 CCAGTCCACAGGGCAGCA 61.958 66.667 0.00 0.00 0.00 4.41
1188 1211 3.001406 GTGGACCCAGGTACGGCT 61.001 66.667 0.00 0.00 0.00 5.52
1240 1264 4.551388 GTTATCTCCGGTTAGCTCATGAG 58.449 47.826 18.84 18.84 0.00 2.90
1412 1436 4.459089 GGGCTGCTCGACCTCCAC 62.459 72.222 0.00 0.00 38.04 4.02
1465 1489 3.681897 AGACGAGAGCTGCAGTTTTTATG 59.318 43.478 16.64 1.80 0.00 1.90
1482 1506 7.173390 AGTTTTTATGAGTACTGCTTCTGTTCC 59.827 37.037 0.00 0.00 0.00 3.62
1595 1619 1.352352 CCACATGGGTCCTCAGAAGTT 59.648 52.381 0.00 0.00 0.00 2.66
1665 1689 5.163903 ACTGTTTCGTTTTTGTTTTGGCATC 60.164 36.000 0.00 0.00 0.00 3.91
1715 1739 9.670180 GTTACTTGTGCGAAATTAAATATTTGC 57.330 29.630 11.05 5.11 0.00 3.68
1721 1745 7.219917 TGTGCGAAATTAAATATTTGCTACAGC 59.780 33.333 11.05 9.90 42.50 4.40
1792 1817 4.082125 GGGTCTCATTTTGGTCATGTTCT 58.918 43.478 0.00 0.00 0.00 3.01
1823 1848 1.219124 CCACGCCATGTACTCTGCT 59.781 57.895 0.00 0.00 0.00 4.24
1888 1927 3.890756 TGTGTTCAACAGAGGATGCAAAT 59.109 39.130 0.00 0.00 33.78 2.32
1951 1990 7.137490 TCCGTACTGTATGGTTCGATATAAG 57.863 40.000 22.11 0.00 36.23 1.73
2060 2105 8.027798 AGCAATGGGACATATATTATTGCCCAT 61.028 37.037 14.02 0.00 46.89 4.00
2148 2194 4.942852 TGGTGCTGAAAAGTTTGGTTATG 58.057 39.130 0.00 0.00 0.00 1.90
2168 2214 2.105766 GCCAATGGAGAAGGCTTTGAT 58.894 47.619 2.05 0.00 44.92 2.57
2199 2245 4.623932 ATGAGCTTTGGTACAGACAAGA 57.376 40.909 0.00 0.00 42.39 3.02
2279 2325 3.875510 GAAGGCAGCCCCTGTTGCT 62.876 63.158 8.22 0.00 45.62 3.91
2323 2369 5.381174 TTCTTTGTCTTGCTCCATGATTG 57.619 39.130 0.00 0.00 0.00 2.67
2336 2382 7.937649 TGCTCCATGATTGAATATTTCTCAAG 58.062 34.615 0.00 0.00 36.30 3.02
2514 2561 3.160679 ACTTAAGGTTCATGCCAAGCT 57.839 42.857 7.53 0.00 35.59 3.74
2533 2607 6.938596 CCAAGCTTGTTATCTCCATATGATCA 59.061 38.462 24.35 0.00 0.00 2.92
2546 2620 8.309656 TCTCCATATGATCATAACTTGCTACTG 58.690 37.037 19.03 9.35 0.00 2.74
2548 2622 7.235399 TCCATATGATCATAACTTGCTACTGGA 59.765 37.037 19.03 18.71 0.00 3.86
2570 2644 7.795047 TGGAAGTCTATTCTCATTGCTTGATA 58.205 34.615 0.00 0.00 32.72 2.15
2635 2709 3.559238 AAGCATGGATTTGTGTTCGAC 57.441 42.857 0.00 0.00 0.00 4.20
2676 2750 5.122869 ACGTTTCAAATGATGAGGTGATCAG 59.877 40.000 0.00 0.00 42.53 2.90
2678 2752 6.348786 CGTTTCAAATGATGAGGTGATCAGTT 60.349 38.462 0.00 0.00 42.53 3.16
2682 2756 6.994496 TCAAATGATGAGGTGATCAGTTATCC 59.006 38.462 0.00 0.00 42.53 2.59
2685 2759 1.067060 TGAGGTGATCAGTTATCCGCG 59.933 52.381 0.00 0.00 33.22 6.46
2691 2765 0.595053 ATCAGTTATCCGCGCACTCG 60.595 55.000 8.75 0.00 39.07 4.18
2700 2774 3.835378 TCCGCGCACTCGATATAATTA 57.165 42.857 8.75 0.00 38.10 1.40
2701 2775 3.495193 TCCGCGCACTCGATATAATTAC 58.505 45.455 8.75 0.00 38.10 1.89
2740 2814 6.521151 AAATTTATTCTCAGCAACCTGGAG 57.479 37.500 0.00 0.00 39.61 3.86
2741 2815 2.698855 TATTCTCAGCAACCTGGAGC 57.301 50.000 0.00 4.03 39.61 4.70
2779 2853 2.631160 ATCGTGAAACAGTGGAACCA 57.369 45.000 0.00 0.00 37.80 3.67
2797 2871 3.844640 ACCAGTGGTTCCTGCTATTTTT 58.155 40.909 9.70 0.00 27.29 1.94
2843 2917 4.637276 TGCATATGGACAAACCGGTATAG 58.363 43.478 8.00 2.93 42.61 1.31
2915 2991 6.655003 ACAACTCCTAACTTACATTGTCCATG 59.345 38.462 0.00 0.00 39.07 3.66
2968 3044 1.916181 CTTCCTCTAAAGGCCTCCCAA 59.084 52.381 5.23 0.00 43.02 4.12
3001 3077 6.015434 TGAGACTAATGCACCATACATATCGT 60.015 38.462 0.00 0.00 0.00 3.73
3055 3131 8.567198 TCTTTGAGATCTATGGAGGGAAATTA 57.433 34.615 0.00 0.00 0.00 1.40
3136 3212 8.752005 ATAAAGTCTATGCAGAAAGCCAATTA 57.248 30.769 0.00 0.00 44.83 1.40
3321 3397 0.249868 CTGGTGCAAACGAGGAGTCA 60.250 55.000 0.00 0.00 0.00 3.41
3351 3427 1.476891 CATGCCATTCTTCAGCTTGCT 59.523 47.619 0.00 0.00 0.00 3.91
3384 3460 4.154015 CGTGTTGATGGCAATGAGTCTAAA 59.846 41.667 0.00 0.00 36.22 1.85
3533 3623 9.062524 ACACTATGTATTTTGCTAACACTGAAA 57.937 29.630 0.00 0.00 0.00 2.69
3540 3632 9.405587 GTATTTTGCTAACACTGAAATGCTTTA 57.594 29.630 0.00 0.00 0.00 1.85
3587 3679 5.065988 GGGCGCTGAGATCAATAAAAGTTTA 59.934 40.000 7.64 0.00 0.00 2.01
3671 3763 6.037830 GTGGTAGCAAGTTGACTGAAGTTTTA 59.962 38.462 7.16 0.00 0.00 1.52
3695 3787 5.105187 ACGAGATTCATTCATTGGAGACTCA 60.105 40.000 4.53 0.00 0.00 3.41
3710 3802 2.028658 AGACTCACGCACTGTCATGATT 60.029 45.455 0.00 0.00 33.56 2.57
3779 3871 7.966812 ACACATTGAGATATGCTGATAGGTAA 58.033 34.615 0.00 0.00 0.00 2.85
3871 3963 3.906014 TTCAGAGTGAAGAGTCTGTCG 57.094 47.619 0.00 0.00 46.22 4.35
3880 3972 3.637229 TGAAGAGTCTGTCGAAAGGAAGT 59.363 43.478 1.94 0.00 0.00 3.01
3925 4017 1.078759 CCGCTGCACCTTTACGAGAG 61.079 60.000 0.00 0.00 0.00 3.20
3937 4029 3.627645 ACGAGAGTCGAGTCCTTCA 57.372 52.632 16.67 0.00 44.19 3.02
4001 4093 7.941238 AGGTAATGAATGATATCACTGAAAGGG 59.059 37.037 7.78 0.00 40.34 3.95
4069 4161 4.875536 TCACCATCGTTTGTGGATAGAATG 59.124 41.667 0.00 0.00 39.12 2.67
4140 4232 5.443185 TTCAATGAACAAAGAAGCAGAGG 57.557 39.130 0.00 0.00 0.00 3.69
4141 4233 3.254166 TCAATGAACAAAGAAGCAGAGGC 59.746 43.478 0.00 0.00 41.61 4.70
4143 4235 2.867624 TGAACAAAGAAGCAGAGGCAT 58.132 42.857 0.00 0.00 44.61 4.40
4147 4239 0.524862 AAAGAAGCAGAGGCATTGCG 59.475 50.000 1.91 0.00 45.98 4.85
4151 4243 4.189188 GCAGAGGCATTGCGGCAG 62.189 66.667 1.67 0.00 44.47 4.85
4189 4281 4.568072 ACCAGATACAATGTACCAGCAA 57.432 40.909 0.00 0.00 0.00 3.91
4201 4293 0.178953 ACCAGCAAGGAAGGCAACAT 60.179 50.000 1.83 0.00 41.22 2.71
4227 4319 2.774809 GGAAGGGTAGAGATCCAGCTTT 59.225 50.000 0.00 0.00 32.08 3.51
4360 4452 8.686334 ACCATTTTGTTGATAGAATATGACCAC 58.314 33.333 0.00 0.00 0.00 4.16
4395 4487 2.685897 TGTTTGTTAACTGGTGCAGGAC 59.314 45.455 7.22 0.00 35.51 3.85
4592 4693 0.896940 ATCAGCCTGGCAACCAACTG 60.897 55.000 22.65 8.51 38.41 3.16
4757 4859 0.953003 GGCCTATTCGTCGCTACTCT 59.047 55.000 0.00 0.00 0.00 3.24
4825 4927 4.891037 GCCCCCATGAGCTCTGCC 62.891 72.222 16.19 0.00 0.00 4.85
4952 5054 2.404215 CCGACTCCGTAGCATATTTGG 58.596 52.381 0.00 0.00 0.00 3.28
4953 5055 2.404215 CGACTCCGTAGCATATTTGGG 58.596 52.381 0.00 0.00 0.00 4.12
4954 5056 2.767505 GACTCCGTAGCATATTTGGGG 58.232 52.381 0.00 0.00 0.00 4.96
4955 5057 1.202770 ACTCCGTAGCATATTTGGGGC 60.203 52.381 0.00 0.00 0.00 5.80
4956 5058 0.109723 TCCGTAGCATATTTGGGGCC 59.890 55.000 0.00 0.00 0.00 5.80
4957 5059 0.179004 CCGTAGCATATTTGGGGCCA 60.179 55.000 4.39 0.00 0.00 5.36
4958 5060 1.238439 CGTAGCATATTTGGGGCCAG 58.762 55.000 4.39 0.00 0.00 4.85
4959 5061 1.476833 CGTAGCATATTTGGGGCCAGT 60.477 52.381 4.39 0.00 0.00 4.00
4960 5062 2.666317 GTAGCATATTTGGGGCCAGTT 58.334 47.619 4.39 0.00 0.00 3.16
4961 5063 1.780503 AGCATATTTGGGGCCAGTTC 58.219 50.000 4.39 0.00 0.00 3.01
4962 5064 1.288932 AGCATATTTGGGGCCAGTTCT 59.711 47.619 4.39 0.00 0.00 3.01
4963 5065 2.110578 GCATATTTGGGGCCAGTTCTT 58.889 47.619 4.39 0.00 0.00 2.52
4964 5066 2.501316 GCATATTTGGGGCCAGTTCTTT 59.499 45.455 4.39 0.00 0.00 2.52
4965 5067 3.055167 GCATATTTGGGGCCAGTTCTTTT 60.055 43.478 4.39 0.00 0.00 2.27
4966 5068 4.506758 CATATTTGGGGCCAGTTCTTTTG 58.493 43.478 4.39 0.00 0.00 2.44
4967 5069 1.127343 TTTGGGGCCAGTTCTTTTGG 58.873 50.000 4.39 0.00 38.78 3.28
4968 5070 0.762461 TTGGGGCCAGTTCTTTTGGG 60.762 55.000 4.39 0.00 36.19 4.12
4971 5073 3.758172 GCCAGTTCTTTTGGGCGA 58.242 55.556 0.00 0.00 36.58 5.54
4972 5074 2.267045 GCCAGTTCTTTTGGGCGAT 58.733 52.632 0.00 0.00 36.58 4.58
4973 5075 0.603065 GCCAGTTCTTTTGGGCGATT 59.397 50.000 0.00 0.00 36.58 3.34
4974 5076 1.402852 GCCAGTTCTTTTGGGCGATTC 60.403 52.381 0.00 0.00 36.58 2.52
4975 5077 2.162681 CCAGTTCTTTTGGGCGATTCT 58.837 47.619 0.00 0.00 31.87 2.40
4976 5078 3.343617 CCAGTTCTTTTGGGCGATTCTA 58.656 45.455 0.00 0.00 31.87 2.10
4977 5079 3.947834 CCAGTTCTTTTGGGCGATTCTAT 59.052 43.478 0.00 0.00 31.87 1.98
4978 5080 4.035675 CCAGTTCTTTTGGGCGATTCTATC 59.964 45.833 0.00 0.00 31.87 2.08
4979 5081 4.635765 CAGTTCTTTTGGGCGATTCTATCA 59.364 41.667 0.00 0.00 0.00 2.15
4980 5082 4.878397 AGTTCTTTTGGGCGATTCTATCAG 59.122 41.667 0.00 0.00 0.00 2.90
4981 5083 4.753516 TCTTTTGGGCGATTCTATCAGA 57.246 40.909 0.00 0.00 0.00 3.27
4982 5084 5.097742 TCTTTTGGGCGATTCTATCAGAA 57.902 39.130 0.00 0.00 38.78 3.02
4983 5085 5.684704 TCTTTTGGGCGATTCTATCAGAAT 58.315 37.500 1.09 1.09 46.84 2.40
5004 5106 3.416351 CCCCCTCCCCAGTTTCTC 58.584 66.667 0.00 0.00 0.00 2.87
5005 5107 1.229984 CCCCCTCCCCAGTTTCTCT 60.230 63.158 0.00 0.00 0.00 3.10
5006 5108 1.275421 CCCCCTCCCCAGTTTCTCTC 61.275 65.000 0.00 0.00 0.00 3.20
5007 5109 1.617947 CCCCTCCCCAGTTTCTCTCG 61.618 65.000 0.00 0.00 0.00 4.04
5008 5110 1.617947 CCCTCCCCAGTTTCTCTCGG 61.618 65.000 0.00 0.00 0.00 4.63
5009 5111 0.614979 CCTCCCCAGTTTCTCTCGGA 60.615 60.000 0.00 0.00 0.00 4.55
5010 5112 1.267121 CTCCCCAGTTTCTCTCGGAA 58.733 55.000 0.00 0.00 0.00 4.30
5011 5113 1.834263 CTCCCCAGTTTCTCTCGGAAT 59.166 52.381 0.00 0.00 33.53 3.01
5012 5114 1.831736 TCCCCAGTTTCTCTCGGAATC 59.168 52.381 0.00 0.00 33.53 2.52
5013 5115 1.555075 CCCCAGTTTCTCTCGGAATCA 59.445 52.381 0.00 0.00 33.53 2.57
5014 5116 2.622436 CCCAGTTTCTCTCGGAATCAC 58.378 52.381 0.00 0.00 33.53 3.06
5015 5117 2.234908 CCCAGTTTCTCTCGGAATCACT 59.765 50.000 0.00 0.00 33.53 3.41
5016 5118 3.447586 CCCAGTTTCTCTCGGAATCACTA 59.552 47.826 0.00 0.00 33.53 2.74
5017 5119 4.425520 CCAGTTTCTCTCGGAATCACTAC 58.574 47.826 0.00 0.00 33.53 2.73
5018 5120 4.158764 CCAGTTTCTCTCGGAATCACTACT 59.841 45.833 0.00 0.00 33.53 2.57
5019 5121 5.336849 CCAGTTTCTCTCGGAATCACTACTT 60.337 44.000 0.00 0.00 33.53 2.24
5020 5122 5.802956 CAGTTTCTCTCGGAATCACTACTTC 59.197 44.000 0.00 0.00 33.53 3.01
5021 5123 5.477291 AGTTTCTCTCGGAATCACTACTTCA 59.523 40.000 0.00 0.00 33.53 3.02
5022 5124 6.153680 AGTTTCTCTCGGAATCACTACTTCAT 59.846 38.462 0.00 0.00 33.53 2.57
5023 5125 7.339721 AGTTTCTCTCGGAATCACTACTTCATA 59.660 37.037 0.00 0.00 33.53 2.15
5024 5126 7.825331 TTCTCTCGGAATCACTACTTCATAT 57.175 36.000 0.00 0.00 0.00 1.78
5025 5127 8.919777 TTCTCTCGGAATCACTACTTCATATA 57.080 34.615 0.00 0.00 0.00 0.86
5026 5128 9.521841 TTCTCTCGGAATCACTACTTCATATAT 57.478 33.333 0.00 0.00 0.00 0.86
5027 5129 9.521841 TCTCTCGGAATCACTACTTCATATATT 57.478 33.333 0.00 0.00 0.00 1.28
5088 5190 8.066612 AGGATTGTAAACAAAATATGGAGTGG 57.933 34.615 0.00 0.00 39.55 4.00
5089 5191 6.756542 GGATTGTAAACAAAATATGGAGTGGC 59.243 38.462 0.00 0.00 39.55 5.01
5090 5192 5.303747 TGTAAACAAAATATGGAGTGGCG 57.696 39.130 0.00 0.00 0.00 5.69
5091 5193 5.004448 TGTAAACAAAATATGGAGTGGCGA 58.996 37.500 0.00 0.00 0.00 5.54
5092 5194 5.650266 TGTAAACAAAATATGGAGTGGCGAT 59.350 36.000 0.00 0.00 0.00 4.58
5093 5195 5.659440 AAACAAAATATGGAGTGGCGATT 57.341 34.783 0.00 0.00 0.00 3.34
5094 5196 4.900635 ACAAAATATGGAGTGGCGATTC 57.099 40.909 0.00 0.00 0.00 2.52
5095 5197 4.526970 ACAAAATATGGAGTGGCGATTCT 58.473 39.130 0.00 0.00 0.00 2.40
5096 5198 4.336433 ACAAAATATGGAGTGGCGATTCTG 59.664 41.667 0.00 0.00 0.00 3.02
5097 5199 2.847327 ATATGGAGTGGCGATTCTGG 57.153 50.000 0.00 0.00 0.00 3.86
5098 5200 1.788229 TATGGAGTGGCGATTCTGGA 58.212 50.000 0.00 0.00 0.00 3.86
5099 5201 0.911769 ATGGAGTGGCGATTCTGGAA 59.088 50.000 0.00 0.00 0.00 3.53
5100 5202 0.690192 TGGAGTGGCGATTCTGGAAA 59.310 50.000 0.00 0.00 0.00 3.13
5101 5203 1.073125 TGGAGTGGCGATTCTGGAAAA 59.927 47.619 0.00 0.00 0.00 2.29
5102 5204 2.159382 GGAGTGGCGATTCTGGAAAAA 58.841 47.619 0.00 0.00 0.00 1.94
5103 5205 2.162408 GGAGTGGCGATTCTGGAAAAAG 59.838 50.000 0.00 0.00 0.00 2.27
5104 5206 1.541588 AGTGGCGATTCTGGAAAAAGC 59.458 47.619 0.00 0.00 0.00 3.51
5105 5207 1.541588 GTGGCGATTCTGGAAAAAGCT 59.458 47.619 0.00 0.00 0.00 3.74
5106 5208 1.541147 TGGCGATTCTGGAAAAAGCTG 59.459 47.619 0.00 0.00 0.00 4.24
5107 5209 1.135286 GGCGATTCTGGAAAAAGCTGG 60.135 52.381 0.00 0.00 0.00 4.85
5108 5210 1.135286 GCGATTCTGGAAAAAGCTGGG 60.135 52.381 0.00 0.00 0.00 4.45
5109 5211 2.436417 CGATTCTGGAAAAAGCTGGGA 58.564 47.619 0.00 0.00 0.00 4.37
5110 5212 2.819608 CGATTCTGGAAAAAGCTGGGAA 59.180 45.455 0.00 0.00 0.00 3.97
5111 5213 3.119708 CGATTCTGGAAAAAGCTGGGAAG 60.120 47.826 0.00 0.00 0.00 3.46
5112 5214 2.292828 TCTGGAAAAAGCTGGGAAGG 57.707 50.000 0.00 0.00 0.00 3.46
5113 5215 1.780309 TCTGGAAAAAGCTGGGAAGGA 59.220 47.619 0.00 0.00 0.00 3.36
5114 5216 2.165998 CTGGAAAAAGCTGGGAAGGAG 58.834 52.381 0.00 0.00 0.00 3.69
5115 5217 1.203050 TGGAAAAAGCTGGGAAGGAGG 60.203 52.381 0.00 0.00 0.00 4.30
5116 5218 1.550327 GAAAAAGCTGGGAAGGAGGG 58.450 55.000 0.00 0.00 0.00 4.30
5117 5219 0.860457 AAAAAGCTGGGAAGGAGGGT 59.140 50.000 0.00 0.00 0.00 4.34
5118 5220 0.113190 AAAAGCTGGGAAGGAGGGTG 59.887 55.000 0.00 0.00 0.00 4.61
5119 5221 0.772124 AAAGCTGGGAAGGAGGGTGA 60.772 55.000 0.00 0.00 0.00 4.02
5120 5222 0.551131 AAGCTGGGAAGGAGGGTGAT 60.551 55.000 0.00 0.00 0.00 3.06
5121 5223 0.551131 AGCTGGGAAGGAGGGTGATT 60.551 55.000 0.00 0.00 0.00 2.57
5122 5224 0.106967 GCTGGGAAGGAGGGTGATTC 60.107 60.000 0.00 0.00 0.00 2.52
5123 5225 1.589414 CTGGGAAGGAGGGTGATTCT 58.411 55.000 0.00 0.00 0.00 2.40
5124 5226 1.211457 CTGGGAAGGAGGGTGATTCTG 59.789 57.143 0.00 0.00 0.00 3.02
5125 5227 0.548510 GGGAAGGAGGGTGATTCTGG 59.451 60.000 0.00 0.00 0.00 3.86
5126 5228 0.548510 GGAAGGAGGGTGATTCTGGG 59.451 60.000 0.00 0.00 0.00 4.45
5127 5229 1.584724 GAAGGAGGGTGATTCTGGGA 58.415 55.000 0.00 0.00 0.00 4.37
5128 5230 1.488393 GAAGGAGGGTGATTCTGGGAG 59.512 57.143 0.00 0.00 0.00 4.30
5129 5231 0.719015 AGGAGGGTGATTCTGGGAGA 59.281 55.000 0.00 0.00 0.00 3.71
5130 5232 1.081174 AGGAGGGTGATTCTGGGAGAA 59.919 52.381 0.00 0.00 38.78 2.87
5131 5233 2.131023 GGAGGGTGATTCTGGGAGAAT 58.869 52.381 0.00 0.00 46.84 2.40
5142 5244 3.453559 GGGAGAATCGCCGAAAAGA 57.546 52.632 0.00 0.00 43.06 2.52
5143 5245 1.734163 GGGAGAATCGCCGAAAAGAA 58.266 50.000 0.00 0.00 43.06 2.52
5144 5246 1.397343 GGGAGAATCGCCGAAAAGAAC 59.603 52.381 0.00 0.00 43.06 3.01
5145 5247 2.347731 GGAGAATCGCCGAAAAGAACT 58.652 47.619 0.00 0.00 34.37 3.01
5146 5248 2.094417 GGAGAATCGCCGAAAAGAACTG 59.906 50.000 0.00 0.00 34.37 3.16
5147 5249 2.076863 AGAATCGCCGAAAAGAACTGG 58.923 47.619 0.00 0.00 0.00 4.00
5150 5252 2.962569 GCCGAAAAGAACTGGCCC 59.037 61.111 0.00 0.00 41.70 5.80
5162 5264 1.002134 CTGGCCCAGTCGTTCCATT 60.002 57.895 1.39 0.00 0.00 3.16
5169 5271 0.943673 CAGTCGTTCCATTGTGTGCA 59.056 50.000 0.00 0.00 0.00 4.57
5177 5279 1.687660 TCCATTGTGTGCATGTGCTTT 59.312 42.857 6.55 0.00 42.66 3.51
5197 5299 5.353123 GCTTTGTACTTCCGTTCAATCCATA 59.647 40.000 0.00 0.00 31.76 2.74
5290 5392 3.248602 GTGCATGAAGATTCCGGTATGTC 59.751 47.826 0.00 0.00 0.00 3.06
5292 5394 2.218953 TGAAGATTCCGGTATGTCGC 57.781 50.000 0.00 0.00 0.00 5.19
5301 5403 1.819208 GGTATGTCGCTGCATGGCA 60.819 57.895 0.00 0.00 36.92 4.92
5340 5442 6.592607 ACACATACCTTATTTCTGTGGTTACG 59.407 38.462 6.02 0.00 41.09 3.18
5341 5443 6.814644 CACATACCTTATTTCTGTGGTTACGA 59.185 38.462 0.00 0.00 34.88 3.43
5433 5536 5.607119 ACAAAAACGTGTCTCATACATCC 57.393 39.130 0.00 0.00 41.10 3.51
5435 5538 3.587797 AAACGTGTCTCATACATCCGT 57.412 42.857 0.00 0.00 41.11 4.69
5439 5542 3.192844 ACGTGTCTCATACATCCGTTTCT 59.807 43.478 0.00 0.00 37.48 2.52
5445 5548 6.708502 TGTCTCATACATCCGTTTCTGAAAAA 59.291 34.615 4.09 0.00 31.43 1.94
5454 5557 4.127171 CCGTTTCTGAAAAACTCTCTCCA 58.873 43.478 4.09 0.00 0.00 3.86
5458 5561 6.203723 CGTTTCTGAAAAACTCTCTCCAATCT 59.796 38.462 4.09 0.00 0.00 2.40
5494 5598 8.743085 ATGCACACTCAGTATAATTTGAAGAT 57.257 30.769 0.00 0.00 0.00 2.40
5516 5620 7.465116 AGATCTTATATTTGTGAATGGAGGGG 58.535 38.462 0.00 0.00 0.00 4.79
5567 5671 7.523415 TCTTATGTTAGTTTTTCTCCCAACCT 58.477 34.615 0.00 0.00 0.00 3.50
5582 5686 3.412386 CCAACCTTTCTTTCGTCATCCT 58.588 45.455 0.00 0.00 0.00 3.24
5585 5689 3.665190 ACCTTTCTTTCGTCATCCTCAC 58.335 45.455 0.00 0.00 0.00 3.51
5587 5691 2.363788 TTCTTTCGTCATCCTCACCG 57.636 50.000 0.00 0.00 0.00 4.94
5621 5725 1.568504 TCGCTTAGGGTGTCTCCAAT 58.431 50.000 0.00 0.00 38.11 3.16
5631 5735 4.040952 AGGGTGTCTCCAATAGCATACATC 59.959 45.833 0.00 0.00 38.11 3.06
5639 5743 7.283127 GTCTCCAATAGCATACATCAAAAAGGA 59.717 37.037 0.00 0.00 0.00 3.36
5644 5748 9.241317 CAATAGCATACATCAAAAAGGACAATC 57.759 33.333 0.00 0.00 0.00 2.67
5645 5749 8.757982 ATAGCATACATCAAAAAGGACAATCT 57.242 30.769 0.00 0.00 0.00 2.40
5647 5751 6.660521 AGCATACATCAAAAAGGACAATCTGA 59.339 34.615 0.00 0.00 0.00 3.27
5657 5761 1.927174 GGACAATCTGAATCGTCCACG 59.073 52.381 14.90 0.00 45.96 4.94
5659 5763 0.652592 CAATCTGAATCGTCCACGCC 59.347 55.000 0.00 0.00 39.60 5.68
5664 5768 1.144057 GAATCGTCCACGCCTCCAT 59.856 57.895 0.00 0.00 39.60 3.41
5666 5770 2.593468 AATCGTCCACGCCTCCATGG 62.593 60.000 4.97 4.97 39.60 3.66
5670 5774 2.436646 CCACGCCTCCATGGACAC 60.437 66.667 11.44 4.64 38.34 3.67
5700 5804 0.454600 GACTGCGGACAACGGATAGA 59.545 55.000 0.00 0.00 43.72 1.98
5707 5811 1.112113 GACAACGGATAGAGGGCTGA 58.888 55.000 0.00 0.00 0.00 4.26
5726 5830 1.617850 GACATCCAATTTGGTGCACCA 59.382 47.619 34.74 34.74 45.94 4.17
5743 5847 4.009675 GCACCAAATGTCCATCTCTTGTA 58.990 43.478 0.00 0.00 0.00 2.41
5744 5848 4.142600 GCACCAAATGTCCATCTCTTGTAC 60.143 45.833 0.00 0.00 0.00 2.90
5762 5868 7.634718 TCTTGTACAATAGAGAGAGGAGAGAA 58.365 38.462 9.13 0.00 0.00 2.87
5784 5890 1.563410 AGGGAGGAGGATGAAAAGCTG 59.437 52.381 0.00 0.00 0.00 4.24
5816 5922 1.282157 GGTCCAAGGCTTGTCCATAGT 59.718 52.381 24.57 0.00 37.29 2.12
5825 5931 0.611200 TTGTCCATAGTGTGTCCGGG 59.389 55.000 0.00 0.00 0.00 5.73
5831 5937 0.617820 ATAGTGTGTCCGGGCTCCTT 60.618 55.000 7.97 0.00 0.00 3.36
5853 5959 6.543831 CCTTAAGCCACTTCTATGTTTGCTAT 59.456 38.462 0.00 0.00 0.00 2.97
5854 5960 7.254932 CCTTAAGCCACTTCTATGTTTGCTATC 60.255 40.741 0.00 0.00 0.00 2.08
5877 5983 3.335579 GTTTAGCAGAATTCGGACACCT 58.664 45.455 9.97 0.00 0.00 4.00
5893 5999 3.049674 CTTGCCTGCTCCGCGAAA 61.050 61.111 8.23 0.00 0.00 3.46
5898 6004 1.207593 CCTGCTCCGCGAAAGTTTG 59.792 57.895 8.23 0.00 0.00 2.93
5899 6005 1.227999 CCTGCTCCGCGAAAGTTTGA 61.228 55.000 8.23 0.00 0.00 2.69
5900 6006 0.798776 CTGCTCCGCGAAAGTTTGAT 59.201 50.000 8.23 0.00 0.00 2.57
5901 6007 0.516877 TGCTCCGCGAAAGTTTGATG 59.483 50.000 8.23 0.00 0.00 3.07
5902 6008 0.517316 GCTCCGCGAAAGTTTGATGT 59.483 50.000 8.23 0.00 0.00 3.06
5903 6009 1.725931 GCTCCGCGAAAGTTTGATGTG 60.726 52.381 8.23 0.00 0.00 3.21
5904 6010 0.237235 TCCGCGAAAGTTTGATGTGC 59.763 50.000 8.23 0.00 0.00 4.57
5905 6011 0.729140 CCGCGAAAGTTTGATGTGCC 60.729 55.000 8.23 0.00 0.00 5.01
5906 6012 0.238289 CGCGAAAGTTTGATGTGCCT 59.762 50.000 0.00 0.00 0.00 4.75
5907 6013 1.463056 CGCGAAAGTTTGATGTGCCTA 59.537 47.619 0.00 0.00 0.00 3.93
5908 6014 2.095853 CGCGAAAGTTTGATGTGCCTAT 59.904 45.455 0.00 0.00 0.00 2.57
5909 6015 3.308595 CGCGAAAGTTTGATGTGCCTATA 59.691 43.478 0.00 0.00 0.00 1.31
5910 6016 4.588278 GCGAAAGTTTGATGTGCCTATAC 58.412 43.478 0.00 0.00 0.00 1.47
5911 6017 4.495844 GCGAAAGTTTGATGTGCCTATACC 60.496 45.833 0.00 0.00 0.00 2.73
5912 6018 4.876107 CGAAAGTTTGATGTGCCTATACCT 59.124 41.667 0.00 0.00 0.00 3.08
5913 6019 5.220662 CGAAAGTTTGATGTGCCTATACCTG 60.221 44.000 0.00 0.00 0.00 4.00
5914 6020 4.156455 AGTTTGATGTGCCTATACCTGG 57.844 45.455 0.00 0.00 0.00 4.45
5921 6027 1.380302 GCCTATACCTGGCCATGGG 59.620 63.158 20.97 16.10 44.32 4.00
5973 6079 4.096003 CGGCCCGACCTTGTCCAT 62.096 66.667 0.00 0.00 35.61 3.41
5974 6080 2.438434 GGCCCGACCTTGTCCATG 60.438 66.667 0.00 0.00 34.51 3.66
5975 6081 2.438434 GCCCGACCTTGTCCATGG 60.438 66.667 4.97 4.97 0.00 3.66
5976 6082 2.272146 CCCGACCTTGTCCATGGG 59.728 66.667 13.02 0.00 0.00 4.00
5977 6083 2.438434 CCGACCTTGTCCATGGGC 60.438 66.667 10.20 10.20 0.00 5.36
5978 6084 2.438434 CGACCTTGTCCATGGGCC 60.438 66.667 15.27 4.53 30.24 5.80
5979 6085 2.438434 GACCTTGTCCATGGGCCG 60.438 66.667 15.27 4.70 0.00 6.13
5980 6086 3.995506 GACCTTGTCCATGGGCCGG 62.996 68.421 15.27 16.66 0.00 6.13
5981 6087 4.820744 CCTTGTCCATGGGCCGGG 62.821 72.222 15.27 12.08 0.00 5.73
5998 6104 4.018409 GCCTGGGCCTAGGTTTTG 57.982 61.111 33.45 10.82 40.11 2.44
5999 6105 1.382629 GCCTGGGCCTAGGTTTTGA 59.617 57.895 33.45 0.00 40.11 2.69
6000 6106 0.681243 GCCTGGGCCTAGGTTTTGAG 60.681 60.000 33.45 9.35 40.11 3.02
6001 6107 0.681243 CCTGGGCCTAGGTTTTGAGC 60.681 60.000 26.70 0.00 32.99 4.26
6002 6108 0.681243 CTGGGCCTAGGTTTTGAGCC 60.681 60.000 8.57 2.81 43.09 4.70
6003 6109 4.338815 GGCCTAGGTTTTGAGCCC 57.661 61.111 11.31 0.00 37.66 5.19
6004 6110 1.749258 GGCCTAGGTTTTGAGCCCG 60.749 63.158 11.31 0.00 37.66 6.13
6005 6111 1.298667 GCCTAGGTTTTGAGCCCGA 59.701 57.895 11.31 0.00 0.00 5.14
6006 6112 0.322187 GCCTAGGTTTTGAGCCCGAA 60.322 55.000 11.31 0.00 0.00 4.30
6007 6113 1.450025 CCTAGGTTTTGAGCCCGAAC 58.550 55.000 0.00 0.00 0.00 3.95
6008 6114 1.076332 CTAGGTTTTGAGCCCGAACG 58.924 55.000 0.00 0.00 0.00 3.95
6009 6115 0.952010 TAGGTTTTGAGCCCGAACGC 60.952 55.000 0.00 0.00 0.00 4.84
6010 6116 2.258726 GGTTTTGAGCCCGAACGCT 61.259 57.895 0.00 0.00 43.42 5.07
6011 6117 0.952010 GGTTTTGAGCCCGAACGCTA 60.952 55.000 0.00 0.00 39.87 4.26
6012 6118 0.442699 GTTTTGAGCCCGAACGCTAG 59.557 55.000 0.00 0.00 39.87 3.42
6013 6119 0.672401 TTTTGAGCCCGAACGCTAGG 60.672 55.000 0.00 0.00 39.87 3.02
6014 6120 1.823169 TTTGAGCCCGAACGCTAGGT 61.823 55.000 0.00 0.00 39.87 3.08
6015 6121 2.104530 GAGCCCGAACGCTAGGTC 59.895 66.667 0.00 0.00 39.87 3.85
6021 6127 4.867599 GAACGCTAGGTCGGGCCG 62.868 72.222 22.51 22.51 43.70 6.13
6041 6147 2.510906 GCCGGGCCAGTCATATGT 59.489 61.111 8.12 0.00 0.00 2.29
6042 6148 1.893808 GCCGGGCCAGTCATATGTG 60.894 63.158 8.12 0.00 0.00 3.21
6043 6149 1.526887 CCGGGCCAGTCATATGTGT 59.473 57.895 4.39 0.00 0.00 3.72
6044 6150 0.107214 CCGGGCCAGTCATATGTGTT 60.107 55.000 4.39 0.00 0.00 3.32
6045 6151 1.016627 CGGGCCAGTCATATGTGTTG 58.983 55.000 4.39 0.31 0.00 3.33
6046 6152 1.678728 CGGGCCAGTCATATGTGTTGT 60.679 52.381 4.39 0.00 0.00 3.32
6047 6153 2.446435 GGGCCAGTCATATGTGTTGTT 58.554 47.619 4.39 0.00 0.00 2.83
6048 6154 2.825532 GGGCCAGTCATATGTGTTGTTT 59.174 45.455 4.39 0.00 0.00 2.83
6049 6155 4.013728 GGGCCAGTCATATGTGTTGTTTA 58.986 43.478 4.39 0.00 0.00 2.01
6050 6156 4.461081 GGGCCAGTCATATGTGTTGTTTAA 59.539 41.667 4.39 0.00 0.00 1.52
6051 6157 5.127031 GGGCCAGTCATATGTGTTGTTTAAT 59.873 40.000 4.39 0.00 0.00 1.40
6052 6158 6.035843 GGCCAGTCATATGTGTTGTTTAATG 58.964 40.000 0.00 0.00 0.00 1.90
6053 6159 6.127758 GGCCAGTCATATGTGTTGTTTAATGA 60.128 38.462 0.00 0.00 0.00 2.57
6054 6160 7.312154 GCCAGTCATATGTGTTGTTTAATGAA 58.688 34.615 1.90 0.00 0.00 2.57
6055 6161 7.485913 GCCAGTCATATGTGTTGTTTAATGAAG 59.514 37.037 1.90 0.00 0.00 3.02
6056 6162 8.729756 CCAGTCATATGTGTTGTTTAATGAAGA 58.270 33.333 1.90 0.00 0.00 2.87
6057 6163 9.764870 CAGTCATATGTGTTGTTTAATGAAGAG 57.235 33.333 1.90 0.00 0.00 2.85
6058 6164 8.950210 AGTCATATGTGTTGTTTAATGAAGAGG 58.050 33.333 1.90 0.00 0.00 3.69
6059 6165 7.698130 GTCATATGTGTTGTTTAATGAAGAGGC 59.302 37.037 1.90 0.00 0.00 4.70
6060 6166 4.846779 TGTGTTGTTTAATGAAGAGGCC 57.153 40.909 0.00 0.00 0.00 5.19
6061 6167 3.572255 TGTGTTGTTTAATGAAGAGGCCC 59.428 43.478 0.00 0.00 0.00 5.80
6062 6168 2.817258 TGTTGTTTAATGAAGAGGCCCG 59.183 45.455 0.00 0.00 0.00 6.13
6063 6169 2.122783 TGTTTAATGAAGAGGCCCGG 57.877 50.000 0.00 0.00 0.00 5.73
6064 6170 0.738975 GTTTAATGAAGAGGCCCGGC 59.261 55.000 0.00 0.00 0.00 6.13
6096 6202 2.050077 GCTTTTGCAGTGACGGGC 60.050 61.111 0.00 0.00 46.58 6.13
6097 6203 2.644992 CTTTTGCAGTGACGGGCC 59.355 61.111 0.00 0.00 0.00 5.80
6098 6204 2.124109 TTTTGCAGTGACGGGCCA 60.124 55.556 4.39 0.00 0.00 5.36
6099 6205 2.133742 CTTTTGCAGTGACGGGCCAG 62.134 60.000 4.39 1.85 0.00 4.85
6100 6206 4.641645 TTGCAGTGACGGGCCAGG 62.642 66.667 8.08 0.00 0.00 4.45
6103 6209 4.767255 CAGTGACGGGCCAGGCTC 62.767 72.222 11.07 6.22 0.00 4.70
6133 6239 2.323968 TTTTTGCTTTGGGCTTGGTC 57.676 45.000 0.00 0.00 42.39 4.02
6134 6240 1.198713 TTTTGCTTTGGGCTTGGTCA 58.801 45.000 0.00 0.00 42.39 4.02
6135 6241 0.752054 TTTGCTTTGGGCTTGGTCAG 59.248 50.000 0.00 0.00 42.39 3.51
6136 6242 1.114722 TTGCTTTGGGCTTGGTCAGG 61.115 55.000 0.00 0.00 42.39 3.86
6143 6249 4.232310 GCTTGGTCAGGCCTGATC 57.768 61.111 37.07 36.07 42.18 2.92
6144 6250 1.452833 GCTTGGTCAGGCCTGATCC 60.453 63.158 37.38 34.09 39.91 3.36
6145 6251 1.153289 CTTGGTCAGGCCTGATCCG 60.153 63.158 37.38 26.10 39.91 4.18
6146 6252 1.612146 TTGGTCAGGCCTGATCCGA 60.612 57.895 37.38 31.77 39.91 4.55
6147 6253 1.198094 TTGGTCAGGCCTGATCCGAA 61.198 55.000 37.38 25.50 39.91 4.30
6148 6254 1.144936 GGTCAGGCCTGATCCGAAG 59.855 63.158 37.07 7.49 42.18 3.79
6149 6255 1.522580 GTCAGGCCTGATCCGAAGC 60.523 63.158 37.07 19.27 42.18 3.86
6150 6256 1.687146 TCAGGCCTGATCCGAAGCT 60.687 57.895 32.00 0.00 34.14 3.74
6151 6257 1.227497 CAGGCCTGATCCGAAGCTC 60.227 63.158 29.88 0.00 0.00 4.09
6152 6258 2.279784 GGCCTGATCCGAAGCTCG 60.280 66.667 0.00 0.00 40.07 5.03
6161 6267 4.856607 CGAAGCTCGGCCCGACTC 62.857 72.222 0.00 0.00 36.00 3.36
6162 6268 3.760035 GAAGCTCGGCCCGACTCA 61.760 66.667 0.00 0.00 0.00 3.41
6163 6269 3.708220 GAAGCTCGGCCCGACTCAG 62.708 68.421 0.00 0.00 0.00 3.35
6172 6278 2.765807 CCGACTCAGGGGATGGCT 60.766 66.667 0.00 0.00 0.00 4.75
6173 6279 1.457643 CCGACTCAGGGGATGGCTA 60.458 63.158 0.00 0.00 0.00 3.93
6174 6280 1.467678 CCGACTCAGGGGATGGCTAG 61.468 65.000 0.00 0.00 0.00 3.42
6175 6281 1.467678 CGACTCAGGGGATGGCTAGG 61.468 65.000 0.00 0.00 0.00 3.02
6176 6282 0.399233 GACTCAGGGGATGGCTAGGT 60.399 60.000 0.00 0.00 0.00 3.08
6177 6283 0.941963 ACTCAGGGGATGGCTAGGTA 59.058 55.000 0.00 0.00 0.00 3.08
6178 6284 1.509961 ACTCAGGGGATGGCTAGGTAT 59.490 52.381 0.00 0.00 0.00 2.73
6179 6285 2.728013 ACTCAGGGGATGGCTAGGTATA 59.272 50.000 0.00 0.00 0.00 1.47
6210 6316 6.152831 GCCCCATTAAATGACTAAAAGTGTCT 59.847 38.462 0.00 0.00 35.63 3.41
6219 6325 5.227908 TGACTAAAAGTGTCTGAATCGTCC 58.772 41.667 0.00 0.00 35.63 4.79
6223 6329 2.853731 AGTGTCTGAATCGTCCGATC 57.146 50.000 2.23 0.00 33.08 3.69
6254 6360 4.207891 AGAAGCGATTTGATGTACACCT 57.792 40.909 0.00 0.00 0.00 4.00
6349 6455 1.587054 CACCACTCCTCACGACCTC 59.413 63.158 0.00 0.00 0.00 3.85
6355 6461 1.323412 CTCCTCACGACCTCCCATAG 58.677 60.000 0.00 0.00 0.00 2.23
6360 6466 3.055385 CCTCACGACCTCCCATAGAAAAA 60.055 47.826 0.00 0.00 0.00 1.94
6361 6467 4.384208 CCTCACGACCTCCCATAGAAAAAT 60.384 45.833 0.00 0.00 0.00 1.82
6362 6468 5.163343 CCTCACGACCTCCCATAGAAAAATA 60.163 44.000 0.00 0.00 0.00 1.40
6364 6470 5.057149 CACGACCTCCCATAGAAAAATAGG 58.943 45.833 0.00 0.00 0.00 2.57
6365 6471 4.065789 CGACCTCCCATAGAAAAATAGGC 58.934 47.826 0.00 0.00 0.00 3.93
6366 6472 4.202367 CGACCTCCCATAGAAAAATAGGCT 60.202 45.833 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 193 3.932580 TTCAGAGCGCGGCGATGTT 62.933 57.895 28.54 7.57 0.00 2.71
202 204 0.507358 GGAACGTCGTGTTTCAGAGC 59.493 55.000 0.00 0.00 42.09 4.09
208 210 1.227734 CCAGGGGAACGTCGTGTTT 60.228 57.895 0.00 0.00 42.09 2.83
453 465 4.762765 ACAAATGCCCGTCACTGTATTTAA 59.237 37.500 0.00 0.00 0.00 1.52
454 466 4.155099 CACAAATGCCCGTCACTGTATTTA 59.845 41.667 0.00 0.00 0.00 1.40
463 475 1.963855 CGGACACAAATGCCCGTCA 60.964 57.895 0.00 0.00 37.40 4.35
545 557 5.959618 ACTTACATGGTTTTAGAGCAACC 57.040 39.130 0.00 0.00 43.68 3.77
557 569 8.514594 CACTATGACAAATGAAACTTACATGGT 58.485 33.333 0.00 0.00 0.00 3.55
569 581 5.415389 CCAATGTGGACACTATGACAAATGA 59.585 40.000 3.91 0.00 40.96 2.57
576 588 4.649267 TTTCCCAATGTGGACACTATGA 57.351 40.909 3.91 0.00 40.96 2.15
579 591 4.141287 CAGTTTTCCCAATGTGGACACTA 58.859 43.478 3.91 0.00 40.96 2.74
589 601 4.162131 GGTGCATAATCCAGTTTTCCCAAT 59.838 41.667 0.00 0.00 0.00 3.16
590 602 3.513515 GGTGCATAATCCAGTTTTCCCAA 59.486 43.478 0.00 0.00 0.00 4.12
591 603 3.096092 GGTGCATAATCCAGTTTTCCCA 58.904 45.455 0.00 0.00 0.00 4.37
601 613 8.353423 ACATCAATTAATAGGGTGCATAATCC 57.647 34.615 0.00 0.00 0.00 3.01
619 631 6.127793 AGTTAGGTCCTACGAGTACATCAAT 58.872 40.000 0.00 0.00 0.00 2.57
696 708 3.575630 GATTTCGTTTCCCTCCTTTTGC 58.424 45.455 0.00 0.00 0.00 3.68
816 834 1.223763 CGGGTAGGAAGGGGAAAGC 59.776 63.158 0.00 0.00 0.00 3.51
865 883 1.600636 CGTCAAGCTTTCAGCCCCA 60.601 57.895 0.00 0.00 43.77 4.96
870 888 1.453524 CGACTGACGTCAAGCTTTCAG 59.546 52.381 20.49 19.67 40.23 3.02
878 896 2.609491 CCCAGATTTCGACTGACGTCAA 60.609 50.000 20.49 3.48 40.23 3.18
879 897 1.067846 CCCAGATTTCGACTGACGTCA 60.068 52.381 18.88 18.88 40.23 4.35
1024 1047 1.302832 CTGTGGACTGGGGAGCAAC 60.303 63.158 0.00 0.00 0.00 4.17
1188 1211 2.031944 CGCAGATCTCGAGGAATCGTTA 60.032 50.000 13.56 0.00 0.00 3.18
1216 1240 2.372264 TGAGCTAACCGGAGATAACGT 58.628 47.619 9.46 0.00 0.00 3.99
1220 1244 3.821600 GACTCATGAGCTAACCGGAGATA 59.178 47.826 22.83 0.00 0.00 1.98
1240 1264 3.617288 GCAAAATCACCCCAAATCCAGAC 60.617 47.826 0.00 0.00 0.00 3.51
1412 1436 2.218953 TAAGCTCGGTATCAAAGGCG 57.781 50.000 0.00 0.00 0.00 5.52
1465 1489 3.119459 TCATCGGAACAGAAGCAGTACTC 60.119 47.826 0.00 0.00 0.00 2.59
1482 1506 1.884464 CAGCCACACGGGATCATCG 60.884 63.158 0.00 6.22 40.01 3.84
1577 1601 3.884037 AAAACTTCTGAGGACCCATGT 57.116 42.857 0.00 0.00 0.00 3.21
1595 1619 9.202273 CACCGATGATCCAAAGAAAATTAAAAA 57.798 29.630 0.00 0.00 0.00 1.94
1600 1624 5.982890 ACACCGATGATCCAAAGAAAATT 57.017 34.783 0.00 0.00 0.00 1.82
1665 1689 5.757886 TGAAATTCGCCTAAAACAAGACTG 58.242 37.500 0.00 0.00 0.00 3.51
1721 1745 2.492484 ACGTCTCACCAGCTACCTAAAG 59.508 50.000 0.00 0.00 0.00 1.85
1823 1848 3.397849 TGCCAAAGCACATATTTGCAA 57.602 38.095 15.86 0.00 46.52 4.08
1846 1871 8.931385 AACACAGCCATAAATTCATTAACATC 57.069 30.769 0.00 0.00 0.00 3.06
1888 1927 2.114411 GGTCAAAACCTCCCGGCA 59.886 61.111 0.00 0.00 42.80 5.69
1996 2035 3.279434 GGTTTACCAGCGATCCTTCATT 58.721 45.455 0.00 0.00 35.64 2.57
2148 2194 1.549203 TCAAAGCCTTCTCCATTGGC 58.451 50.000 0.00 0.00 46.42 4.52
2168 2214 4.422073 ACCAAAGCTCATATCCGAATCA 57.578 40.909 0.00 0.00 0.00 2.57
2199 2245 0.322975 ACAGCGGACTTGCTCATCTT 59.677 50.000 0.00 0.00 45.23 2.40
2279 2325 8.472007 AGAAACATACCACCACTTTGATTTTA 57.528 30.769 0.00 0.00 0.00 1.52
2323 2369 7.807977 TTGTATGAGCCCTTGAGAAATATTC 57.192 36.000 0.00 0.00 0.00 1.75
2383 2430 2.851824 GCGCACCTGCATTTAACATTAC 59.148 45.455 0.30 0.00 42.21 1.89
2533 2607 8.312669 AGAATAGACTTCCAGTAGCAAGTTAT 57.687 34.615 0.00 0.00 32.83 1.89
2546 2620 7.172361 GGTATCAAGCAATGAGAATAGACTTCC 59.828 40.741 0.00 0.00 42.53 3.46
2548 2622 7.714377 CAGGTATCAAGCAATGAGAATAGACTT 59.286 37.037 0.00 0.00 42.53 3.01
2551 2625 6.528321 CCAGGTATCAAGCAATGAGAATAGA 58.472 40.000 0.00 0.00 42.53 1.98
2570 2644 2.372264 CTGCAGAATTATGTGCCAGGT 58.628 47.619 8.42 0.00 44.84 4.00
2635 2709 0.443869 CGTCCTCATCCAAAACAGCG 59.556 55.000 0.00 0.00 0.00 5.18
2676 2750 1.978542 ATATCGAGTGCGCGGATAAC 58.021 50.000 8.83 0.00 37.46 1.89
2678 2752 4.365899 AATTATATCGAGTGCGCGGATA 57.634 40.909 8.83 13.86 37.46 2.59
2682 2756 3.912563 ACTGTAATTATATCGAGTGCGCG 59.087 43.478 0.00 0.00 37.46 6.86
2730 2804 2.355010 ATAGAATGGCTCCAGGTTGC 57.645 50.000 0.00 0.00 0.00 4.17
2738 2812 7.441458 ACGATAAACCTGTAAATAGAATGGCTC 59.559 37.037 0.00 0.00 0.00 4.70
2740 2814 7.225931 TCACGATAAACCTGTAAATAGAATGGC 59.774 37.037 0.00 0.00 0.00 4.40
2741 2815 8.657074 TCACGATAAACCTGTAAATAGAATGG 57.343 34.615 0.00 0.00 0.00 3.16
2779 2853 5.944007 ACGATTAAAAATAGCAGGAACCACT 59.056 36.000 0.00 0.00 0.00 4.00
2797 2871 6.380095 AAACAAGTTGCCTTTGTACGATTA 57.620 33.333 1.81 0.00 37.77 1.75
2827 2901 1.483415 GGAGCTATACCGGTTTGTCCA 59.517 52.381 15.04 0.00 35.57 4.02
2915 2991 3.501062 GTGTAGGTTTTTCCACTACCTGC 59.499 47.826 0.00 0.00 42.14 4.85
2968 3044 5.316167 TGGTGCATTAGTCTCAAAATGTCT 58.684 37.500 0.00 0.00 35.86 3.41
3043 3119 6.708885 AGCAGATCATATAATTTCCCTCCA 57.291 37.500 0.00 0.00 0.00 3.86
3055 3131 7.753630 ACCTCCTTTCATTAAGCAGATCATAT 58.246 34.615 0.00 0.00 32.19 1.78
3114 3190 6.604795 ACATAATTGGCTTTCTGCATAGACTT 59.395 34.615 0.00 0.00 45.15 3.01
3128 3204 6.899393 TTCAGAACTGAAACATAATTGGCT 57.101 33.333 13.78 0.00 45.56 4.75
3321 3397 3.766068 AGAATGGCATGAGATCGTGAT 57.234 42.857 0.00 0.00 34.90 3.06
3351 3427 1.735018 CCATCAACACGCCGTTTGATA 59.265 47.619 19.60 3.15 34.86 2.15
3384 3460 4.047125 CCGGCCAATCTGGGTGGT 62.047 66.667 2.24 0.00 38.19 4.16
3510 3600 9.013490 GCATTTCAGTGTTAGCAAAATACATAG 57.987 33.333 0.00 0.00 0.00 2.23
3515 3605 9.973450 TTAAAGCATTTCAGTGTTAGCAAAATA 57.027 25.926 0.00 0.00 40.09 1.40
3516 3606 8.885494 TTAAAGCATTTCAGTGTTAGCAAAAT 57.115 26.923 0.00 0.00 40.09 1.82
3546 3638 3.441572 GCGCCCTCAATTCTGCATAATAT 59.558 43.478 0.00 0.00 0.00 1.28
3566 3658 7.217070 GCAAGTAAACTTTTATTGATCTCAGCG 59.783 37.037 0.00 0.00 33.11 5.18
3587 3679 5.477984 TCTGATGCATTCCTTTAAAGCAAGT 59.522 36.000 9.86 0.00 44.28 3.16
3671 3763 5.105187 TGAGTCTCCAATGAATGAATCTCGT 60.105 40.000 0.00 0.00 0.00 4.18
3710 3802 4.272489 CAGAACTAGGGGAAATGCATGAA 58.728 43.478 0.00 0.00 0.00 2.57
3786 3878 9.177608 AGCTACTGCAACATAAAGAATGAATAA 57.822 29.630 0.00 0.00 42.74 1.40
3788 3880 7.478322 CAGCTACTGCAACATAAAGAATGAAT 58.522 34.615 0.00 0.00 42.74 2.57
3871 3963 6.619801 TCTTTCTTGCTGTTACTTCCTTTC 57.380 37.500 0.00 0.00 0.00 2.62
3880 3972 3.754965 AGGCACATCTTTCTTGCTGTTA 58.245 40.909 0.00 0.00 36.46 2.41
3925 4017 1.726853 CCAATGGTGAAGGACTCGAC 58.273 55.000 0.00 0.00 0.00 4.20
3937 4029 1.530323 GTACAACCGAAGCCAATGGT 58.470 50.000 0.00 0.00 37.68 3.55
4069 4161 1.205460 TGTCTTCCCTACCCTTGGGC 61.205 60.000 5.46 0.00 44.23 5.36
4147 4239 1.595382 CACGGCTATACCTGCTGCC 60.595 63.158 0.00 0.00 40.21 4.85
4151 4243 0.033090 GGTACCACGGCTATACCTGC 59.967 60.000 7.15 0.00 36.26 4.85
4156 4248 4.103013 TGTATCTGGTACCACGGCTATA 57.897 45.455 11.60 1.63 32.03 1.31
4189 4281 1.973281 CCGTGCATGTTGCCTTCCT 60.973 57.895 4.96 0.00 44.23 3.36
4201 4293 1.112113 GATCTCTACCCTTCCGTGCA 58.888 55.000 0.00 0.00 0.00 4.57
4360 4452 7.166804 CAGTTAACAAACATCAAAACCTAACCG 59.833 37.037 8.61 0.00 0.00 4.44
4395 4487 4.109050 GAGCACTCACTAAATCTTCCTCG 58.891 47.826 0.00 0.00 0.00 4.63
4757 4859 1.286849 TCCTCATTACCCTCGGAGACA 59.713 52.381 6.58 0.00 0.00 3.41
4952 5054 2.931068 CGCCCAAAAGAACTGGCCC 61.931 63.158 0.00 0.00 40.87 5.80
4953 5055 1.250840 ATCGCCCAAAAGAACTGGCC 61.251 55.000 0.00 0.00 40.87 5.36
4954 5056 0.603065 AATCGCCCAAAAGAACTGGC 59.397 50.000 0.00 0.00 40.54 4.85
4955 5057 2.162681 AGAATCGCCCAAAAGAACTGG 58.837 47.619 0.00 0.00 0.00 4.00
4956 5058 4.635765 TGATAGAATCGCCCAAAAGAACTG 59.364 41.667 0.00 0.00 0.00 3.16
4957 5059 4.843728 TGATAGAATCGCCCAAAAGAACT 58.156 39.130 0.00 0.00 0.00 3.01
4958 5060 4.876107 TCTGATAGAATCGCCCAAAAGAAC 59.124 41.667 0.00 0.00 0.00 3.01
4959 5061 5.097742 TCTGATAGAATCGCCCAAAAGAA 57.902 39.130 0.00 0.00 0.00 2.52
4960 5062 4.753516 TCTGATAGAATCGCCCAAAAGA 57.246 40.909 0.00 0.00 0.00 2.52
4987 5089 1.229984 AGAGAAACTGGGGAGGGGG 60.230 63.158 0.00 0.00 0.00 5.40
4988 5090 1.617947 CGAGAGAAACTGGGGAGGGG 61.618 65.000 0.00 0.00 0.00 4.79
4989 5091 1.617947 CCGAGAGAAACTGGGGAGGG 61.618 65.000 0.00 0.00 40.18 4.30
4990 5092 0.614979 TCCGAGAGAAACTGGGGAGG 60.615 60.000 0.00 0.00 43.34 4.30
4991 5093 1.267121 TTCCGAGAGAAACTGGGGAG 58.733 55.000 0.00 0.00 43.34 4.30
4992 5094 1.831736 GATTCCGAGAGAAACTGGGGA 59.168 52.381 0.00 0.00 43.34 4.81
4993 5095 1.555075 TGATTCCGAGAGAAACTGGGG 59.445 52.381 0.00 0.00 43.34 4.96
4994 5096 2.234908 AGTGATTCCGAGAGAAACTGGG 59.765 50.000 0.00 0.00 44.29 4.45
4995 5097 3.601443 AGTGATTCCGAGAGAAACTGG 57.399 47.619 0.00 0.00 38.21 4.00
4996 5098 5.317733 AGTAGTGATTCCGAGAGAAACTG 57.682 43.478 0.00 0.00 38.21 3.16
4997 5099 5.477291 TGAAGTAGTGATTCCGAGAGAAACT 59.523 40.000 0.00 0.00 38.21 2.66
4998 5100 5.710984 TGAAGTAGTGATTCCGAGAGAAAC 58.289 41.667 0.00 0.00 38.21 2.78
4999 5101 5.977489 TGAAGTAGTGATTCCGAGAGAAA 57.023 39.130 0.00 0.00 38.21 2.52
5000 5102 7.825331 ATATGAAGTAGTGATTCCGAGAGAA 57.175 36.000 0.00 0.00 39.32 2.87
5001 5103 9.521841 AATATATGAAGTAGTGATTCCGAGAGA 57.478 33.333 0.00 0.00 0.00 3.10
5062 5164 9.184523 CCACTCCATATTTTGTTTACAATCCTA 57.815 33.333 0.00 0.00 35.55 2.94
5063 5165 7.363793 GCCACTCCATATTTTGTTTACAATCCT 60.364 37.037 0.00 0.00 35.55 3.24
5064 5166 6.756542 GCCACTCCATATTTTGTTTACAATCC 59.243 38.462 0.00 0.00 35.55 3.01
5065 5167 6.472163 CGCCACTCCATATTTTGTTTACAATC 59.528 38.462 0.00 0.00 35.55 2.67
5066 5168 6.151985 TCGCCACTCCATATTTTGTTTACAAT 59.848 34.615 0.00 0.00 35.55 2.71
5067 5169 5.473846 TCGCCACTCCATATTTTGTTTACAA 59.526 36.000 0.00 0.00 0.00 2.41
5068 5170 5.004448 TCGCCACTCCATATTTTGTTTACA 58.996 37.500 0.00 0.00 0.00 2.41
5069 5171 5.554822 TCGCCACTCCATATTTTGTTTAC 57.445 39.130 0.00 0.00 0.00 2.01
5070 5172 6.601613 AGAATCGCCACTCCATATTTTGTTTA 59.398 34.615 0.00 0.00 0.00 2.01
5071 5173 5.418840 AGAATCGCCACTCCATATTTTGTTT 59.581 36.000 0.00 0.00 0.00 2.83
5072 5174 4.949856 AGAATCGCCACTCCATATTTTGTT 59.050 37.500 0.00 0.00 0.00 2.83
5073 5175 4.336433 CAGAATCGCCACTCCATATTTTGT 59.664 41.667 0.00 0.00 0.00 2.83
5074 5176 4.261322 CCAGAATCGCCACTCCATATTTTG 60.261 45.833 0.00 0.00 0.00 2.44
5075 5177 3.885297 CCAGAATCGCCACTCCATATTTT 59.115 43.478 0.00 0.00 0.00 1.82
5076 5178 3.136443 TCCAGAATCGCCACTCCATATTT 59.864 43.478 0.00 0.00 0.00 1.40
5077 5179 2.705658 TCCAGAATCGCCACTCCATATT 59.294 45.455 0.00 0.00 0.00 1.28
5078 5180 2.329267 TCCAGAATCGCCACTCCATAT 58.671 47.619 0.00 0.00 0.00 1.78
5079 5181 1.788229 TCCAGAATCGCCACTCCATA 58.212 50.000 0.00 0.00 0.00 2.74
5080 5182 0.911769 TTCCAGAATCGCCACTCCAT 59.088 50.000 0.00 0.00 0.00 3.41
5081 5183 0.690192 TTTCCAGAATCGCCACTCCA 59.310 50.000 0.00 0.00 0.00 3.86
5082 5184 1.821216 TTTTCCAGAATCGCCACTCC 58.179 50.000 0.00 0.00 0.00 3.85
5083 5185 2.414691 GCTTTTTCCAGAATCGCCACTC 60.415 50.000 0.00 0.00 0.00 3.51
5084 5186 1.541588 GCTTTTTCCAGAATCGCCACT 59.458 47.619 0.00 0.00 0.00 4.00
5085 5187 1.541588 AGCTTTTTCCAGAATCGCCAC 59.458 47.619 0.00 0.00 0.00 5.01
5086 5188 1.541147 CAGCTTTTTCCAGAATCGCCA 59.459 47.619 0.00 0.00 0.00 5.69
5087 5189 1.135286 CCAGCTTTTTCCAGAATCGCC 60.135 52.381 0.00 0.00 0.00 5.54
5088 5190 1.135286 CCCAGCTTTTTCCAGAATCGC 60.135 52.381 0.00 0.00 0.00 4.58
5089 5191 2.436417 TCCCAGCTTTTTCCAGAATCG 58.564 47.619 0.00 0.00 0.00 3.34
5090 5192 3.194329 CCTTCCCAGCTTTTTCCAGAATC 59.806 47.826 0.00 0.00 0.00 2.52
5091 5193 3.168292 CCTTCCCAGCTTTTTCCAGAAT 58.832 45.455 0.00 0.00 0.00 2.40
5092 5194 2.176798 TCCTTCCCAGCTTTTTCCAGAA 59.823 45.455 0.00 0.00 0.00 3.02
5093 5195 1.780309 TCCTTCCCAGCTTTTTCCAGA 59.220 47.619 0.00 0.00 0.00 3.86
5094 5196 2.165998 CTCCTTCCCAGCTTTTTCCAG 58.834 52.381 0.00 0.00 0.00 3.86
5095 5197 1.203050 CCTCCTTCCCAGCTTTTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
5096 5198 1.550327 CCTCCTTCCCAGCTTTTTCC 58.450 55.000 0.00 0.00 0.00 3.13
5097 5199 1.203063 ACCCTCCTTCCCAGCTTTTTC 60.203 52.381 0.00 0.00 0.00 2.29
5098 5200 0.860457 ACCCTCCTTCCCAGCTTTTT 59.140 50.000 0.00 0.00 0.00 1.94
5099 5201 0.113190 CACCCTCCTTCCCAGCTTTT 59.887 55.000 0.00 0.00 0.00 2.27
5100 5202 0.772124 TCACCCTCCTTCCCAGCTTT 60.772 55.000 0.00 0.00 0.00 3.51
5101 5203 0.551131 ATCACCCTCCTTCCCAGCTT 60.551 55.000 0.00 0.00 0.00 3.74
5102 5204 0.551131 AATCACCCTCCTTCCCAGCT 60.551 55.000 0.00 0.00 0.00 4.24
5103 5205 0.106967 GAATCACCCTCCTTCCCAGC 60.107 60.000 0.00 0.00 0.00 4.85
5104 5206 1.211457 CAGAATCACCCTCCTTCCCAG 59.789 57.143 0.00 0.00 0.00 4.45
5105 5207 1.289160 CAGAATCACCCTCCTTCCCA 58.711 55.000 0.00 0.00 0.00 4.37
5106 5208 0.548510 CCAGAATCACCCTCCTTCCC 59.451 60.000 0.00 0.00 0.00 3.97
5107 5209 0.548510 CCCAGAATCACCCTCCTTCC 59.451 60.000 0.00 0.00 0.00 3.46
5108 5210 1.488393 CTCCCAGAATCACCCTCCTTC 59.512 57.143 0.00 0.00 0.00 3.46
5109 5211 1.081174 TCTCCCAGAATCACCCTCCTT 59.919 52.381 0.00 0.00 0.00 3.36
5110 5212 0.719015 TCTCCCAGAATCACCCTCCT 59.281 55.000 0.00 0.00 0.00 3.69
5111 5213 1.584724 TTCTCCCAGAATCACCCTCC 58.415 55.000 0.00 0.00 0.00 4.30
5119 5221 0.830648 TTCGGCGATTCTCCCAGAAT 59.169 50.000 11.76 0.00 46.84 2.40
5120 5222 0.611200 TTTCGGCGATTCTCCCAGAA 59.389 50.000 11.76 0.00 38.78 3.02
5121 5223 0.611200 TTTTCGGCGATTCTCCCAGA 59.389 50.000 11.76 0.00 0.00 3.86
5122 5224 1.009829 CTTTTCGGCGATTCTCCCAG 58.990 55.000 11.76 0.00 0.00 4.45
5123 5225 0.611200 TCTTTTCGGCGATTCTCCCA 59.389 50.000 11.76 0.00 0.00 4.37
5124 5226 1.397343 GTTCTTTTCGGCGATTCTCCC 59.603 52.381 11.76 0.00 0.00 4.30
5125 5227 2.094417 CAGTTCTTTTCGGCGATTCTCC 59.906 50.000 11.76 0.00 0.00 3.71
5126 5228 2.094417 CCAGTTCTTTTCGGCGATTCTC 59.906 50.000 11.76 0.00 0.00 2.87
5127 5229 2.076863 CCAGTTCTTTTCGGCGATTCT 58.923 47.619 11.76 0.35 0.00 2.40
5128 5230 1.465856 GCCAGTTCTTTTCGGCGATTC 60.466 52.381 11.76 0.00 34.26 2.52
5129 5231 0.521735 GCCAGTTCTTTTCGGCGATT 59.478 50.000 11.76 0.00 34.26 3.34
5130 5232 1.305930 GGCCAGTTCTTTTCGGCGAT 61.306 55.000 11.76 0.00 45.85 4.58
5131 5233 1.964373 GGCCAGTTCTTTTCGGCGA 60.964 57.895 4.99 4.99 45.85 5.54
5132 5234 2.561373 GGCCAGTTCTTTTCGGCG 59.439 61.111 0.00 0.00 45.85 6.46
5133 5235 1.866853 CTGGGCCAGTTCTTTTCGGC 61.867 60.000 25.74 0.00 44.10 5.54
5134 5236 0.537371 ACTGGGCCAGTTCTTTTCGG 60.537 55.000 33.18 6.97 42.59 4.30
5135 5237 0.875059 GACTGGGCCAGTTCTTTTCG 59.125 55.000 37.83 11.41 45.44 3.46
5136 5238 0.875059 CGACTGGGCCAGTTCTTTTC 59.125 55.000 37.83 23.20 45.44 2.29
5137 5239 0.182775 ACGACTGGGCCAGTTCTTTT 59.817 50.000 37.83 16.42 45.44 2.27
5138 5240 0.182775 AACGACTGGGCCAGTTCTTT 59.817 50.000 37.83 26.50 45.44 2.52
5139 5241 0.250338 GAACGACTGGGCCAGTTCTT 60.250 55.000 37.83 29.41 45.44 2.52
5140 5242 1.371558 GAACGACTGGGCCAGTTCT 59.628 57.895 37.83 25.00 45.44 3.01
5141 5243 1.671379 GGAACGACTGGGCCAGTTC 60.671 63.158 37.83 29.68 45.44 3.01
5142 5244 1.779061 ATGGAACGACTGGGCCAGTT 61.779 55.000 37.83 24.11 45.44 3.16
5144 5246 1.002134 AATGGAACGACTGGGCCAG 60.002 57.895 31.62 31.62 37.52 4.85
5145 5247 1.303236 CAATGGAACGACTGGGCCA 60.303 57.895 5.85 5.85 34.45 5.36
5146 5248 1.303317 ACAATGGAACGACTGGGCC 60.303 57.895 0.00 0.00 0.00 5.80
5147 5249 0.889186 ACACAATGGAACGACTGGGC 60.889 55.000 0.00 0.00 0.00 5.36
5150 5252 0.943673 TGCACACAATGGAACGACTG 59.056 50.000 0.00 0.00 0.00 3.51
5162 5264 2.296792 AGTACAAAGCACATGCACACA 58.703 42.857 6.64 0.00 45.16 3.72
5197 5299 4.776795 TGTGACGCGGATATACATACAT 57.223 40.909 12.47 0.00 0.00 2.29
5261 5363 4.503123 CCGGAATCTTCATGCACCATAGTA 60.503 45.833 0.00 0.00 0.00 1.82
5262 5364 3.470709 CGGAATCTTCATGCACCATAGT 58.529 45.455 0.00 0.00 0.00 2.12
5263 5365 2.810274 CCGGAATCTTCATGCACCATAG 59.190 50.000 0.00 0.00 0.00 2.23
5264 5366 2.172505 ACCGGAATCTTCATGCACCATA 59.827 45.455 9.46 0.00 0.00 2.74
5265 5367 1.064463 ACCGGAATCTTCATGCACCAT 60.064 47.619 9.46 0.00 0.00 3.55
5266 5368 0.327924 ACCGGAATCTTCATGCACCA 59.672 50.000 9.46 0.00 0.00 4.17
5433 5536 5.734855 TTGGAGAGAGTTTTTCAGAAACG 57.265 39.130 0.00 0.00 35.42 3.60
5470 5573 8.043113 AGATCTTCAAATTATACTGAGTGTGCA 58.957 33.333 0.00 0.00 0.00 4.57
5488 5592 9.565090 CCTCCATTCACAAATATAAGATCTTCA 57.435 33.333 12.24 1.35 0.00 3.02
5494 5598 6.590656 ACCCCTCCATTCACAAATATAAGA 57.409 37.500 0.00 0.00 0.00 2.10
5547 5651 6.192044 AGAAAGGTTGGGAGAAAAACTAACA 58.808 36.000 0.00 0.00 0.00 2.41
5567 5671 2.683968 CGGTGAGGATGACGAAAGAAA 58.316 47.619 0.00 0.00 0.00 2.52
5582 5686 2.889617 AACGATCGATGGCGGTGA 59.110 55.556 24.34 0.00 38.28 4.02
5585 5689 1.636340 GAACAACGATCGATGGCGG 59.364 57.895 26.23 9.82 38.28 6.13
5587 5691 1.012234 GCGAACAACGATCGATGGC 60.012 57.895 26.23 17.28 45.77 4.40
5621 5725 7.828717 TCAGATTGTCCTTTTTGATGTATGCTA 59.171 33.333 0.00 0.00 0.00 3.49
5639 5743 1.359848 GCGTGGACGATTCAGATTGT 58.640 50.000 2.73 0.00 43.02 2.71
5644 5748 1.519455 GGAGGCGTGGACGATTCAG 60.519 63.158 2.73 0.00 43.02 3.02
5645 5749 1.613317 ATGGAGGCGTGGACGATTCA 61.613 55.000 2.73 0.00 43.02 2.57
5647 5751 1.153369 CATGGAGGCGTGGACGATT 60.153 57.895 2.73 0.00 43.02 3.34
5675 5779 2.354188 TTGTCCGCAGTCACGTCG 60.354 61.111 0.00 0.00 0.00 5.12
5682 5786 0.456221 CTCTATCCGTTGTCCGCAGT 59.544 55.000 0.00 0.00 34.38 4.40
5684 5788 1.672854 CCCTCTATCCGTTGTCCGCA 61.673 60.000 0.00 0.00 34.38 5.69
5687 5791 0.105039 CAGCCCTCTATCCGTTGTCC 59.895 60.000 0.00 0.00 0.00 4.02
5688 5792 1.112113 TCAGCCCTCTATCCGTTGTC 58.888 55.000 0.00 0.00 0.00 3.18
5700 5804 1.077663 ACCAAATTGGATGTCAGCCCT 59.922 47.619 20.25 0.00 40.96 5.19
5707 5811 1.714541 TGGTGCACCAAATTGGATGT 58.285 45.000 36.10 0.00 44.35 3.06
5743 5847 5.660864 CCCTTTTCTCTCCTCTCTCTATTGT 59.339 44.000 0.00 0.00 0.00 2.71
5744 5848 5.896678 TCCCTTTTCTCTCCTCTCTCTATTG 59.103 44.000 0.00 0.00 0.00 1.90
5762 5868 2.651841 AGCTTTTCATCCTCCTCCCTTT 59.348 45.455 0.00 0.00 0.00 3.11
5784 5890 1.064685 CCTTGGACCCATAGTGAACCC 60.065 57.143 0.00 0.00 0.00 4.11
5816 5922 1.980052 CTTAAGGAGCCCGGACACA 59.020 57.895 0.73 0.00 0.00 3.72
5831 5937 5.753438 CGATAGCAAACATAGAAGTGGCTTA 59.247 40.000 0.00 0.00 35.45 3.09
5853 5959 2.028839 TGTCCGAATTCTGCTAAACCGA 60.029 45.455 3.52 0.00 0.00 4.69
5854 5960 2.093783 GTGTCCGAATTCTGCTAAACCG 59.906 50.000 3.52 0.00 0.00 4.44
5891 5997 4.949856 CCAGGTATAGGCACATCAAACTTT 59.050 41.667 0.00 0.00 0.00 2.66
5893 5999 4.156455 CCAGGTATAGGCACATCAAACT 57.844 45.455 0.00 0.00 0.00 2.66
5904 6010 1.380302 GCCCATGGCCAGGTATAGG 59.620 63.158 17.55 11.34 44.06 2.57
5956 6062 4.096003 ATGGACAAGGTCGGGCCG 62.096 66.667 22.51 22.51 43.70 6.13
5957 6063 2.438434 CATGGACAAGGTCGGGCC 60.438 66.667 0.00 0.00 32.65 5.80
5958 6064 2.438434 CCATGGACAAGGTCGGGC 60.438 66.667 5.56 0.00 32.65 6.13
5959 6065 2.272146 CCCATGGACAAGGTCGGG 59.728 66.667 15.22 0.00 32.65 5.14
5960 6066 2.438434 GCCCATGGACAAGGTCGG 60.438 66.667 15.22 0.00 32.65 4.79
5961 6067 2.438434 GGCCCATGGACAAGGTCG 60.438 66.667 15.22 0.00 32.65 4.79
5962 6068 2.438434 CGGCCCATGGACAAGGTC 60.438 66.667 15.22 0.00 0.00 3.85
5963 6069 4.047125 CCGGCCCATGGACAAGGT 62.047 66.667 15.22 0.00 0.00 3.50
5964 6070 4.820744 CCCGGCCCATGGACAAGG 62.821 72.222 15.22 9.16 0.00 3.61
5981 6087 0.681243 CTCAAAACCTAGGCCCAGGC 60.681 60.000 18.25 0.00 39.53 4.85
5982 6088 0.681243 GCTCAAAACCTAGGCCCAGG 60.681 60.000 16.65 16.65 41.87 4.45
5983 6089 0.681243 GGCTCAAAACCTAGGCCCAG 60.681 60.000 9.30 0.00 37.12 4.45
5984 6090 1.382629 GGCTCAAAACCTAGGCCCA 59.617 57.895 9.30 0.00 37.12 5.36
5985 6091 4.338815 GGCTCAAAACCTAGGCCC 57.661 61.111 9.30 0.00 37.12 5.80
5987 6093 0.322187 TTCGGGCTCAAAACCTAGGC 60.322 55.000 9.30 0.00 37.55 3.93
5988 6094 1.450025 GTTCGGGCTCAAAACCTAGG 58.550 55.000 7.41 7.41 0.00 3.02
5989 6095 1.076332 CGTTCGGGCTCAAAACCTAG 58.924 55.000 0.00 0.00 0.00 3.02
5990 6096 0.952010 GCGTTCGGGCTCAAAACCTA 60.952 55.000 0.00 0.00 0.00 3.08
5991 6097 2.258726 GCGTTCGGGCTCAAAACCT 61.259 57.895 0.00 0.00 0.00 3.50
5992 6098 0.952010 TAGCGTTCGGGCTCAAAACC 60.952 55.000 0.00 0.00 43.54 3.27
5993 6099 0.442699 CTAGCGTTCGGGCTCAAAAC 59.557 55.000 0.00 0.00 43.54 2.43
5994 6100 0.672401 CCTAGCGTTCGGGCTCAAAA 60.672 55.000 0.00 0.00 43.54 2.44
5995 6101 1.079405 CCTAGCGTTCGGGCTCAAA 60.079 57.895 0.00 0.00 43.54 2.69
5996 6102 2.221906 GACCTAGCGTTCGGGCTCAA 62.222 60.000 0.00 0.00 43.54 3.02
5997 6103 2.678934 ACCTAGCGTTCGGGCTCA 60.679 61.111 0.00 0.00 43.54 4.26
5998 6104 2.104530 GACCTAGCGTTCGGGCTC 59.895 66.667 0.00 0.00 43.54 4.70
5999 6105 3.823330 CGACCTAGCGTTCGGGCT 61.823 66.667 0.00 2.36 46.88 5.19
6000 6106 4.867599 CCGACCTAGCGTTCGGGC 62.868 72.222 14.71 0.00 41.55 6.13
6002 6108 4.867599 GCCCGACCTAGCGTTCGG 62.868 72.222 15.31 15.31 44.50 4.30
6003 6109 4.867599 GGCCCGACCTAGCGTTCG 62.868 72.222 0.00 0.89 34.51 3.95
6004 6110 4.867599 CGGCCCGACCTAGCGTTC 62.868 72.222 0.00 0.00 35.61 3.95
6024 6130 1.893808 CACATATGACTGGCCCGGC 60.894 63.158 10.38 0.00 0.00 6.13
6025 6131 0.107214 AACACATATGACTGGCCCGG 60.107 55.000 10.38 0.00 0.00 5.73
6026 6132 1.016627 CAACACATATGACTGGCCCG 58.983 55.000 10.38 0.00 0.00 6.13
6027 6133 2.128771 ACAACACATATGACTGGCCC 57.871 50.000 10.38 0.00 0.00 5.80
6028 6134 5.637006 TTAAACAACACATATGACTGGCC 57.363 39.130 10.38 0.00 0.00 5.36
6029 6135 6.851609 TCATTAAACAACACATATGACTGGC 58.148 36.000 10.38 0.00 0.00 4.85
6030 6136 8.729756 TCTTCATTAAACAACACATATGACTGG 58.270 33.333 10.38 0.00 0.00 4.00
6031 6137 9.764870 CTCTTCATTAAACAACACATATGACTG 57.235 33.333 10.38 5.87 0.00 3.51
6032 6138 8.950210 CCTCTTCATTAAACAACACATATGACT 58.050 33.333 10.38 0.00 0.00 3.41
6033 6139 7.698130 GCCTCTTCATTAAACAACACATATGAC 59.302 37.037 10.38 0.00 0.00 3.06
6034 6140 7.148086 GGCCTCTTCATTAAACAACACATATGA 60.148 37.037 10.38 0.00 0.00 2.15
6035 6141 6.974622 GGCCTCTTCATTAAACAACACATATG 59.025 38.462 0.00 0.00 0.00 1.78
6036 6142 6.096846 GGGCCTCTTCATTAAACAACACATAT 59.903 38.462 0.84 0.00 0.00 1.78
6037 6143 5.417580 GGGCCTCTTCATTAAACAACACATA 59.582 40.000 0.84 0.00 0.00 2.29
6038 6144 4.220602 GGGCCTCTTCATTAAACAACACAT 59.779 41.667 0.84 0.00 0.00 3.21
6039 6145 3.572255 GGGCCTCTTCATTAAACAACACA 59.428 43.478 0.84 0.00 0.00 3.72
6040 6146 3.365969 CGGGCCTCTTCATTAAACAACAC 60.366 47.826 0.84 0.00 0.00 3.32
6041 6147 2.817258 CGGGCCTCTTCATTAAACAACA 59.183 45.455 0.84 0.00 0.00 3.33
6042 6148 2.163613 CCGGGCCTCTTCATTAAACAAC 59.836 50.000 0.84 0.00 0.00 3.32
6043 6149 2.442413 CCGGGCCTCTTCATTAAACAA 58.558 47.619 0.84 0.00 0.00 2.83
6044 6150 1.953311 GCCGGGCCTCTTCATTAAACA 60.953 52.381 8.12 0.00 0.00 2.83
6045 6151 0.738975 GCCGGGCCTCTTCATTAAAC 59.261 55.000 8.12 0.00 0.00 2.01
6046 6152 0.395173 GGCCGGGCCTCTTCATTAAA 60.395 55.000 30.86 0.00 46.69 1.52
6047 6153 1.226262 GGCCGGGCCTCTTCATTAA 59.774 57.895 30.86 0.00 46.69 1.40
6048 6154 2.915869 GGCCGGGCCTCTTCATTA 59.084 61.111 30.86 0.00 46.69 1.90
6071 6177 3.737172 CTGCAAAAGCCGACCGGG 61.737 66.667 6.32 0.00 39.58 5.73
6072 6178 2.978010 ACTGCAAAAGCCGACCGG 60.978 61.111 0.00 0.00 38.57 5.28
6073 6179 2.250939 TCACTGCAAAAGCCGACCG 61.251 57.895 0.00 0.00 0.00 4.79
6074 6180 1.282875 GTCACTGCAAAAGCCGACC 59.717 57.895 0.00 0.00 0.00 4.79
6075 6181 1.082756 CGTCACTGCAAAAGCCGAC 60.083 57.895 0.00 0.00 0.00 4.79
6076 6182 2.250939 CCGTCACTGCAAAAGCCGA 61.251 57.895 0.00 0.00 0.00 5.54
6077 6183 2.252260 CCGTCACTGCAAAAGCCG 59.748 61.111 0.00 0.00 0.00 5.52
6078 6184 2.644992 CCCGTCACTGCAAAAGCC 59.355 61.111 0.00 0.00 0.00 4.35
6079 6185 2.050077 GCCCGTCACTGCAAAAGC 60.050 61.111 0.00 0.00 0.00 3.51
6080 6186 2.133742 CTGGCCCGTCACTGCAAAAG 62.134 60.000 0.00 0.00 0.00 2.27
6081 6187 2.124109 TGGCCCGTCACTGCAAAA 60.124 55.556 0.00 0.00 0.00 2.44
6082 6188 2.594303 CTGGCCCGTCACTGCAAA 60.594 61.111 0.00 0.00 0.00 3.68
6083 6189 4.641645 CCTGGCCCGTCACTGCAA 62.642 66.667 0.00 0.00 0.00 4.08
6086 6192 4.767255 GAGCCTGGCCCGTCACTG 62.767 72.222 16.57 0.00 0.00 3.66
6119 6225 2.935740 GCCTGACCAAGCCCAAAGC 61.936 63.158 0.00 0.00 44.25 3.51
6120 6226 2.278330 GGCCTGACCAAGCCCAAAG 61.278 63.158 0.00 0.00 43.76 2.77
6121 6227 2.203625 GGCCTGACCAAGCCCAAA 60.204 61.111 0.00 0.00 43.76 3.28
6126 6232 1.452833 GGATCAGGCCTGACCAAGC 60.453 63.158 37.39 22.01 43.11 4.01
6127 6233 1.153289 CGGATCAGGCCTGACCAAG 60.153 63.158 37.39 21.65 43.11 3.61
6128 6234 1.198094 TTCGGATCAGGCCTGACCAA 61.198 55.000 37.39 26.71 43.11 3.67
6129 6235 1.612146 TTCGGATCAGGCCTGACCA 60.612 57.895 37.39 23.52 43.11 4.02
6130 6236 1.144936 CTTCGGATCAGGCCTGACC 59.855 63.158 37.39 32.83 43.11 4.02
6131 6237 1.522580 GCTTCGGATCAGGCCTGAC 60.523 63.158 37.39 27.61 43.11 3.51
6132 6238 1.680522 GAGCTTCGGATCAGGCCTGA 61.681 60.000 36.73 36.73 44.59 3.86
6133 6239 1.227497 GAGCTTCGGATCAGGCCTG 60.227 63.158 27.87 27.87 0.00 4.85
6134 6240 2.790791 CGAGCTTCGGATCAGGCCT 61.791 63.158 0.00 0.00 36.00 5.19
6135 6241 2.279784 CGAGCTTCGGATCAGGCC 60.280 66.667 0.00 0.00 36.00 5.19
6144 6250 4.856607 GAGTCGGGCCGAGCTTCG 62.857 72.222 31.98 0.00 36.23 3.79
6145 6251 3.708220 CTGAGTCGGGCCGAGCTTC 62.708 68.421 31.98 25.47 36.23 3.86
6146 6252 3.764466 CTGAGTCGGGCCGAGCTT 61.764 66.667 31.98 18.27 36.23 3.74
6152 6258 3.866582 CATCCCCTGAGTCGGGCC 61.867 72.222 13.07 0.00 43.25 5.80
6153 6259 3.866582 CCATCCCCTGAGTCGGGC 61.867 72.222 13.07 0.00 43.25 6.13
6154 6260 2.946988 TAGCCATCCCCTGAGTCGGG 62.947 65.000 11.47 11.47 44.27 5.14
6155 6261 1.457643 TAGCCATCCCCTGAGTCGG 60.458 63.158 0.00 0.00 0.00 4.79
6156 6262 1.467678 CCTAGCCATCCCCTGAGTCG 61.468 65.000 0.00 0.00 0.00 4.18
6157 6263 0.399233 ACCTAGCCATCCCCTGAGTC 60.399 60.000 0.00 0.00 0.00 3.36
6158 6264 0.941963 TACCTAGCCATCCCCTGAGT 59.058 55.000 0.00 0.00 0.00 3.41
6159 6265 2.334006 ATACCTAGCCATCCCCTGAG 57.666 55.000 0.00 0.00 0.00 3.35
6160 6266 3.001086 TCTATACCTAGCCATCCCCTGA 58.999 50.000 0.00 0.00 0.00 3.86
6161 6267 3.474798 TCTATACCTAGCCATCCCCTG 57.525 52.381 0.00 0.00 0.00 4.45
6162 6268 3.341280 ACATCTATACCTAGCCATCCCCT 59.659 47.826 0.00 0.00 0.00 4.79
6163 6269 3.452627 CACATCTATACCTAGCCATCCCC 59.547 52.174 0.00 0.00 0.00 4.81
6164 6270 3.118592 GCACATCTATACCTAGCCATCCC 60.119 52.174 0.00 0.00 0.00 3.85
6165 6271 3.118592 GGCACATCTATACCTAGCCATCC 60.119 52.174 0.00 0.00 40.29 3.51
6166 6272 3.118592 GGGCACATCTATACCTAGCCATC 60.119 52.174 0.00 0.00 42.26 3.51
6167 6273 2.840651 GGGCACATCTATACCTAGCCAT 59.159 50.000 0.00 0.00 42.26 4.40
6168 6274 2.257207 GGGCACATCTATACCTAGCCA 58.743 52.381 0.00 0.00 42.26 4.75
6169 6275 1.555533 GGGGCACATCTATACCTAGCC 59.444 57.143 0.00 0.00 39.86 3.93
6170 6276 2.257207 TGGGGCACATCTATACCTAGC 58.743 52.381 0.00 0.00 0.00 3.42
6171 6277 6.620877 TTAATGGGGCACATCTATACCTAG 57.379 41.667 0.94 0.00 39.40 3.02
6172 6278 7.238723 TCATTTAATGGGGCACATCTATACCTA 59.761 37.037 0.94 0.00 39.40 3.08
6173 6279 5.922960 TTTAATGGGGCACATCTATACCT 57.077 39.130 0.94 0.00 39.40 3.08
6174 6280 6.151144 GTCATTTAATGGGGCACATCTATACC 59.849 42.308 0.94 0.00 39.40 2.73
6175 6281 6.942576 AGTCATTTAATGGGGCACATCTATAC 59.057 38.462 0.94 0.00 39.40 1.47
6176 6282 7.090319 AGTCATTTAATGGGGCACATCTATA 57.910 36.000 0.94 0.00 39.40 1.31
6177 6283 5.957132 AGTCATTTAATGGGGCACATCTAT 58.043 37.500 0.94 0.00 39.40 1.98
6178 6284 5.387113 AGTCATTTAATGGGGCACATCTA 57.613 39.130 0.94 0.00 39.40 1.98
6179 6285 4.255510 AGTCATTTAATGGGGCACATCT 57.744 40.909 0.94 0.00 39.40 2.90
6219 6325 1.787155 CGCTTCTAAATGTCCGGATCG 59.213 52.381 7.81 0.00 0.00 3.69
6223 6329 3.621268 TCAAATCGCTTCTAAATGTCCGG 59.379 43.478 0.00 0.00 0.00 5.14
6237 6343 2.095853 CCACAGGTGTACATCAAATCGC 59.904 50.000 9.22 0.00 0.00 4.58
6291 6397 1.278637 CCGATATTTTCACGCGGGC 59.721 57.895 12.47 0.00 38.40 6.13
6310 6416 2.284417 GCGGATTAGTCATTCGGTTCAC 59.716 50.000 0.00 0.00 0.00 3.18
6323 6429 0.824109 TGAGGAGTGGTGCGGATTAG 59.176 55.000 0.00 0.00 0.00 1.73
6327 6433 3.680786 CGTGAGGAGTGGTGCGGA 61.681 66.667 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.