Multiple sequence alignment - TraesCS3A01G228100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G228100 chr3A 100.000 4054 0 0 1 4054 427093869 427089816 0.000000e+00 7487.0
1 TraesCS3A01G228100 chr3A 95.437 789 35 1 3266 4054 512844604 512845391 0.000000e+00 1256.0
2 TraesCS3A01G228100 chr3A 95.147 783 37 1 3272 4054 438352891 438353672 0.000000e+00 1234.0
3 TraesCS3A01G228100 chr3A 97.879 330 7 0 1 330 688940561 688940890 4.550000e-159 571.0
4 TraesCS3A01G228100 chr3A 95.942 345 13 1 1 344 36274442 36274098 3.540000e-155 558.0
5 TraesCS3A01G228100 chr3A 96.667 330 11 0 1 330 724198023 724197694 2.130000e-152 549.0
6 TraesCS3A01G228100 chr3A 75.149 503 119 5 1053 1552 427191562 427192061 8.760000e-57 231.0
7 TraesCS3A01G228100 chr3D 95.441 1623 58 6 1652 3270 307795635 307794025 0.000000e+00 2573.0
8 TraesCS3A01G228100 chr3D 93.876 1094 46 9 507 1594 307796715 307795637 0.000000e+00 1629.0
9 TraesCS3A01G228100 chr3D 75.149 503 119 5 1053 1552 307880032 307880531 8.760000e-57 231.0
10 TraesCS3A01G228100 chr3B 94.811 1426 64 7 1696 3116 413970111 413971531 0.000000e+00 2215.0
11 TraesCS3A01G228100 chr3B 94.852 1049 35 10 510 1555 413969055 413970087 0.000000e+00 1620.0
12 TraesCS3A01G228100 chr3B 76.541 503 112 6 1053 1552 413865977 413865478 1.860000e-68 270.0
13 TraesCS3A01G228100 chr3B 94.262 122 7 0 3139 3260 413971525 413971646 1.920000e-43 187.0
14 TraesCS3A01G228100 chr3B 89.655 116 6 4 383 492 760148954 760149069 4.220000e-30 143.0
15 TraesCS3A01G228100 chr3B 84.733 131 14 4 383 507 175990889 175990759 4.250000e-25 126.0
16 TraesCS3A01G228100 chr3B 84.091 132 14 5 383 507 433853566 433853697 1.980000e-23 121.0
17 TraesCS3A01G228100 chr3B 95.000 40 2 0 1596 1635 414494848 414494809 3.380000e-06 63.9
18 TraesCS3A01G228100 chr7A 95.147 783 38 0 3272 4054 262135467 262134685 0.000000e+00 1236.0
19 TraesCS3A01G228100 chr7A 95.147 783 36 2 3272 4054 181814029 181814809 0.000000e+00 1234.0
20 TraesCS3A01G228100 chr7A 94.917 787 40 0 3268 4054 558048214 558049000 0.000000e+00 1232.0
21 TraesCS3A01G228100 chr7A 97.640 339 8 0 1 339 171372027 171371689 2.100000e-162 582.0
22 TraesCS3A01G228100 chr7A 96.755 339 11 0 1 339 706119032 706118694 2.110000e-157 566.0
23 TraesCS3A01G228100 chr6A 95.141 782 38 0 3272 4053 176305127 176304346 0.000000e+00 1234.0
24 TraesCS3A01G228100 chr6A 97.605 334 7 1 1 334 60029734 60029402 4.550000e-159 571.0
25 TraesCS3A01G228100 chr6A 79.036 477 90 8 1078 1549 599831994 599831523 6.540000e-83 318.0
26 TraesCS3A01G228100 chr6A 93.617 47 3 0 1589 1635 35922061 35922015 2.020000e-08 71.3
27 TraesCS3A01G228100 chr5A 95.147 783 37 1 3272 4054 292888280 292889061 0.000000e+00 1234.0
28 TraesCS3A01G228100 chr2A 94.924 788 40 0 3267 4054 129093594 129094381 0.000000e+00 1234.0
29 TraesCS3A01G228100 chr2A 96.165 339 13 0 1 339 606380778 606381116 4.580000e-154 555.0
30 TraesCS3A01G228100 chr2A 75.521 384 88 5 1169 1549 174039259 174039639 2.490000e-42 183.0
31 TraesCS3A01G228100 chr2A 89.655 116 6 4 383 492 538485067 538485182 4.220000e-30 143.0
32 TraesCS3A01G228100 chr4A 94.904 785 40 0 3270 4054 237249658 237248874 0.000000e+00 1229.0
33 TraesCS3A01G228100 chr4A 79.847 392 79 0 2113 2504 115304082 115304473 1.840000e-73 287.0
34 TraesCS3A01G228100 chr4A 100.000 38 0 0 344 381 201708008 201708045 2.020000e-08 71.3
35 TraesCS3A01G228100 chr1A 95.870 339 14 0 1 339 341155425 341155763 2.130000e-152 549.0
36 TraesCS3A01G228100 chr1A 76.263 396 92 2 2113 2507 534051257 534050863 4.110000e-50 209.0
37 TraesCS3A01G228100 chr5B 93.939 330 18 2 2 330 666301596 666301268 7.830000e-137 497.0
38 TraesCS3A01G228100 chr6D 79.762 420 81 3 1135 1552 453652376 453651959 6.590000e-78 302.0
39 TraesCS3A01G228100 chr6D 96.154 52 2 0 1590 1641 138401521 138401470 7.220000e-13 86.1
40 TraesCS3A01G228100 chr6B 78.033 478 95 9 1077 1549 688469601 688470073 3.960000e-75 292.0
41 TraesCS3A01G228100 chr6B 89.655 116 6 4 383 492 5560012 5560127 4.220000e-30 143.0
42 TraesCS3A01G228100 chr6B 85.926 135 9 7 383 507 677130183 677130317 7.070000e-28 135.0
43 TraesCS3A01G228100 chr6B 83.099 142 16 6 383 516 348923309 348923450 5.500000e-24 122.0
44 TraesCS3A01G228100 chr4B 80.051 396 78 1 2109 2504 432787728 432787334 3.960000e-75 292.0
45 TraesCS3A01G228100 chr4B 100.000 38 0 0 344 381 497549699 497549662 2.020000e-08 71.3
46 TraesCS3A01G228100 chr2D 89.655 116 6 3 383 492 176599420 176599535 4.220000e-30 143.0
47 TraesCS3A01G228100 chr1D 89.655 116 6 4 383 492 335429756 335429871 4.220000e-30 143.0
48 TraesCS3A01G228100 chr1D 97.368 38 1 0 344 381 336562547 336562584 9.410000e-07 65.8
49 TraesCS3A01G228100 chr7B 87.903 124 7 6 383 499 546712112 546711990 5.460000e-29 139.0
50 TraesCS3A01G228100 chr7B 84.106 151 13 9 383 523 104558989 104558840 7.070000e-28 135.0
51 TraesCS3A01G228100 chr7B 83.582 134 15 5 383 509 681685399 681685266 7.120000e-23 119.0
52 TraesCS3A01G228100 chr2B 83.117 154 18 6 383 529 5115425 5115273 2.540000e-27 134.0
53 TraesCS3A01G228100 chr1B 84.058 138 14 6 383 512 447891881 447891744 4.250000e-25 126.0
54 TraesCS3A01G228100 chr1B 83.846 130 14 5 383 506 460289322 460289194 2.560000e-22 117.0
55 TraesCS3A01G228100 chr1B 91.304 46 4 0 1590 1635 583409323 583409278 3.380000e-06 63.9
56 TraesCS3A01G228100 chrUn 95.556 45 1 1 1592 1635 282596163 282596207 2.020000e-08 71.3
57 TraesCS3A01G228100 chrUn 95.556 45 1 1 1592 1635 287532497 287532453 2.020000e-08 71.3
58 TraesCS3A01G228100 chrUn 95.556 45 1 1 1592 1635 287538618 287538574 2.020000e-08 71.3
59 TraesCS3A01G228100 chrUn 95.556 45 1 1 1592 1635 302878754 302878710 2.020000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G228100 chr3A 427089816 427093869 4053 True 7487.000000 7487 100.000000 1 4054 1 chr3A.!!$R2 4053
1 TraesCS3A01G228100 chr3A 512844604 512845391 787 False 1256.000000 1256 95.437000 3266 4054 1 chr3A.!!$F3 788
2 TraesCS3A01G228100 chr3A 438352891 438353672 781 False 1234.000000 1234 95.147000 3272 4054 1 chr3A.!!$F2 782
3 TraesCS3A01G228100 chr3D 307794025 307796715 2690 True 2101.000000 2573 94.658500 507 3270 2 chr3D.!!$R1 2763
4 TraesCS3A01G228100 chr3B 413969055 413971646 2591 False 1340.666667 2215 94.641667 510 3260 3 chr3B.!!$F3 2750
5 TraesCS3A01G228100 chr7A 262134685 262135467 782 True 1236.000000 1236 95.147000 3272 4054 1 chr7A.!!$R2 782
6 TraesCS3A01G228100 chr7A 181814029 181814809 780 False 1234.000000 1234 95.147000 3272 4054 1 chr7A.!!$F1 782
7 TraesCS3A01G228100 chr7A 558048214 558049000 786 False 1232.000000 1232 94.917000 3268 4054 1 chr7A.!!$F2 786
8 TraesCS3A01G228100 chr6A 176304346 176305127 781 True 1234.000000 1234 95.141000 3272 4053 1 chr6A.!!$R3 781
9 TraesCS3A01G228100 chr5A 292888280 292889061 781 False 1234.000000 1234 95.147000 3272 4054 1 chr5A.!!$F1 782
10 TraesCS3A01G228100 chr2A 129093594 129094381 787 False 1234.000000 1234 94.924000 3267 4054 1 chr2A.!!$F1 787
11 TraesCS3A01G228100 chr4A 237248874 237249658 784 True 1229.000000 1229 94.904000 3270 4054 1 chr4A.!!$R1 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 454 0.179234 TTCTCTTTGGTCACGGTGCA 59.821 50.0 2.51 0.00 0.00 4.57 F
456 457 0.179234 TCTTTGGTCACGGTGCAGAA 59.821 50.0 2.51 0.00 0.00 3.02 F
457 458 0.307760 CTTTGGTCACGGTGCAGAAC 59.692 55.0 2.51 0.00 0.00 3.01 F
1770 1780 0.603065 TGTGACTCTGCAGCGTATGT 59.397 50.0 9.79 2.75 0.00 2.29 F
2414 2430 0.909133 TCCTACTCAGCATGCACCCA 60.909 55.0 21.98 0.00 34.76 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1770 1780 0.039617 CATGAAGAAAACGCCGGCAA 60.040 50.000 28.98 0.00 0.00 4.52 R
2233 2249 0.669318 TAAGCCAAGCAAGTCGTCCG 60.669 55.000 0.00 0.00 0.00 4.79 R
2432 2448 1.296523 AGACCCATGATCTCCTCCCTT 59.703 52.381 0.00 0.00 0.00 3.95 R
2969 2985 1.002250 CATGACTATACGACGGCGCC 61.002 60.000 19.07 19.07 42.48 6.53 R
3909 3926 2.496926 CGAGATTCGATCGTCGGTATG 58.503 52.381 15.94 0.00 43.74 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.758251 CGCCATGACCTGCGTCCA 62.758 66.667 5.98 0.00 45.43 4.02
40 41 3.127533 GCCATGACCTGCGTCCAC 61.128 66.667 0.00 0.00 38.32 4.02
41 42 2.436646 CCATGACCTGCGTCCACC 60.437 66.667 0.00 0.00 38.32 4.61
42 43 2.815211 CATGACCTGCGTCCACCG 60.815 66.667 0.00 0.00 38.32 4.94
43 44 4.082523 ATGACCTGCGTCCACCGG 62.083 66.667 0.00 0.00 38.32 5.28
80 81 4.615795 CCGAGGGGATCCGGCCTA 62.616 72.222 9.38 0.00 39.22 3.93
81 82 3.303928 CGAGGGGATCCGGCCTAC 61.304 72.222 9.38 3.76 38.33 3.18
82 83 2.923568 GAGGGGATCCGGCCTACC 60.924 72.222 9.38 2.07 38.33 3.18
83 84 3.449126 AGGGGATCCGGCCTACCT 61.449 66.667 7.74 3.56 38.33 3.08
84 85 2.923568 GGGGATCCGGCCTACCTC 60.924 72.222 5.45 0.00 0.00 3.85
85 86 2.122989 GGGATCCGGCCTACCTCA 60.123 66.667 5.45 0.00 0.00 3.86
86 87 2.508751 GGGATCCGGCCTACCTCAC 61.509 68.421 5.45 0.00 0.00 3.51
87 88 2.508751 GGATCCGGCCTACCTCACC 61.509 68.421 0.00 0.00 0.00 4.02
88 89 2.838225 ATCCGGCCTACCTCACCG 60.838 66.667 0.00 0.00 46.50 4.94
92 93 2.753043 GGCCTACCTCACCGACGA 60.753 66.667 0.00 0.00 0.00 4.20
93 94 2.772691 GGCCTACCTCACCGACGAG 61.773 68.421 0.00 0.00 0.00 4.18
94 95 2.799371 CCTACCTCACCGACGAGC 59.201 66.667 0.00 0.00 0.00 5.03
95 96 2.044555 CCTACCTCACCGACGAGCA 61.045 63.158 0.00 0.00 0.00 4.26
96 97 1.136984 CTACCTCACCGACGAGCAC 59.863 63.158 0.00 0.00 0.00 4.40
97 98 1.303074 TACCTCACCGACGAGCACT 60.303 57.895 0.00 0.00 0.00 4.40
98 99 1.303799 TACCTCACCGACGAGCACTC 61.304 60.000 0.00 0.00 0.00 3.51
99 100 2.179517 CTCACCGACGAGCACTCC 59.820 66.667 0.00 0.00 0.00 3.85
100 101 3.343788 CTCACCGACGAGCACTCCC 62.344 68.421 0.00 0.00 0.00 4.30
101 102 4.436998 CACCGACGAGCACTCCCC 62.437 72.222 0.00 0.00 0.00 4.81
154 155 4.593864 GCCGCCTCAGATCCGGAC 62.594 72.222 6.12 0.11 44.55 4.79
155 156 3.917760 CCGCCTCAGATCCGGACC 61.918 72.222 6.12 0.00 44.55 4.46
156 157 3.917760 CGCCTCAGATCCGGACCC 61.918 72.222 6.12 0.90 0.00 4.46
157 158 2.444895 GCCTCAGATCCGGACCCT 60.445 66.667 6.12 3.90 0.00 4.34
158 159 2.503382 GCCTCAGATCCGGACCCTC 61.503 68.421 6.12 0.00 0.00 4.30
159 160 1.075970 CCTCAGATCCGGACCCTCA 60.076 63.158 6.12 0.00 0.00 3.86
160 161 1.395826 CCTCAGATCCGGACCCTCAC 61.396 65.000 6.12 0.00 0.00 3.51
161 162 1.381327 TCAGATCCGGACCCTCACC 60.381 63.158 6.12 0.00 0.00 4.02
162 163 1.685765 CAGATCCGGACCCTCACCA 60.686 63.158 6.12 0.00 0.00 4.17
163 164 1.686110 AGATCCGGACCCTCACCAC 60.686 63.158 6.12 0.00 0.00 4.16
164 165 2.687566 ATCCGGACCCTCACCACC 60.688 66.667 6.12 0.00 0.00 4.61
167 168 3.307906 CGGACCCTCACCACCGAA 61.308 66.667 0.00 0.00 46.94 4.30
168 169 2.874664 CGGACCCTCACCACCGAAA 61.875 63.158 0.00 0.00 46.94 3.46
169 170 1.003718 GGACCCTCACCACCGAAAG 60.004 63.158 0.00 0.00 0.00 2.62
181 182 2.202623 CGAAAGGGAGCGGTCTCG 60.203 66.667 15.18 11.82 40.26 4.04
232 233 2.897350 CTTCGCCGGCCATTCCTC 60.897 66.667 23.46 0.00 0.00 3.71
233 234 4.483243 TTCGCCGGCCATTCCTCC 62.483 66.667 23.46 0.00 0.00 4.30
238 239 4.856801 CGGCCATTCCTCCGGTGG 62.857 72.222 16.75 16.75 41.82 4.61
241 242 4.856801 CCATTCCTCCGGTGGCGG 62.857 72.222 18.03 13.43 0.00 6.13
259 260 4.400251 CGAGGTGGGGAGGGAGGT 62.400 72.222 0.00 0.00 0.00 3.85
260 261 2.689034 GAGGTGGGGAGGGAGGTG 60.689 72.222 0.00 0.00 0.00 4.00
261 262 4.354943 AGGTGGGGAGGGAGGTGG 62.355 72.222 0.00 0.00 0.00 4.61
263 264 4.348495 GTGGGGAGGGAGGTGGGA 62.348 72.222 0.00 0.00 0.00 4.37
264 265 3.547737 TGGGGAGGGAGGTGGGAA 61.548 66.667 0.00 0.00 0.00 3.97
265 266 2.692741 GGGGAGGGAGGTGGGAAG 60.693 72.222 0.00 0.00 0.00 3.46
266 267 2.692741 GGGAGGGAGGTGGGAAGG 60.693 72.222 0.00 0.00 0.00 3.46
267 268 2.692741 GGAGGGAGGTGGGAAGGG 60.693 72.222 0.00 0.00 0.00 3.95
268 269 2.125225 GAGGGAGGTGGGAAGGGT 59.875 66.667 0.00 0.00 0.00 4.34
269 270 2.204151 AGGGAGGTGGGAAGGGTG 60.204 66.667 0.00 0.00 0.00 4.61
270 271 2.531942 GGGAGGTGGGAAGGGTGT 60.532 66.667 0.00 0.00 0.00 4.16
271 272 1.229723 GGGAGGTGGGAAGGGTGTA 60.230 63.158 0.00 0.00 0.00 2.90
272 273 0.843343 GGGAGGTGGGAAGGGTGTAA 60.843 60.000 0.00 0.00 0.00 2.41
273 274 0.618981 GGAGGTGGGAAGGGTGTAAG 59.381 60.000 0.00 0.00 0.00 2.34
274 275 0.618981 GAGGTGGGAAGGGTGTAAGG 59.381 60.000 0.00 0.00 0.00 2.69
275 276 1.001269 GGTGGGAAGGGTGTAAGGC 60.001 63.158 0.00 0.00 0.00 4.35
276 277 1.376812 GTGGGAAGGGTGTAAGGCG 60.377 63.158 0.00 0.00 0.00 5.52
277 278 2.437895 GGGAAGGGTGTAAGGCGC 60.438 66.667 0.00 0.00 0.00 6.53
278 279 2.437895 GGAAGGGTGTAAGGCGCC 60.438 66.667 21.89 21.89 46.78 6.53
283 284 2.588034 GGTGTAAGGCGCCGGATC 60.588 66.667 23.20 13.54 38.09 3.36
284 285 2.499685 GTGTAAGGCGCCGGATCT 59.500 61.111 23.20 7.03 0.00 2.75
285 286 1.883084 GTGTAAGGCGCCGGATCTG 60.883 63.158 23.20 0.00 0.00 2.90
286 287 2.280186 GTAAGGCGCCGGATCTGG 60.280 66.667 23.20 16.98 0.00 3.86
287 288 3.546543 TAAGGCGCCGGATCTGGG 61.547 66.667 23.20 12.97 0.00 4.45
292 293 4.547367 CGCCGGATCTGGGTTCCC 62.547 72.222 22.38 3.92 0.00 3.97
293 294 4.191015 GCCGGATCTGGGTTCCCC 62.191 72.222 22.38 0.06 45.71 4.81
339 340 3.777910 GACGCGGGGGCTTCCTTA 61.778 66.667 12.47 0.00 35.33 2.69
340 341 3.087906 ACGCGGGGGCTTCCTTAT 61.088 61.111 12.47 0.00 35.33 1.73
341 342 2.280865 CGCGGGGGCTTCCTTATC 60.281 66.667 0.00 0.00 35.33 1.75
342 343 2.113351 GCGGGGGCTTCCTTATCC 59.887 66.667 0.00 0.00 35.33 2.59
343 344 2.452937 GCGGGGGCTTCCTTATCCT 61.453 63.158 0.00 0.00 35.33 3.24
344 345 1.996070 GCGGGGGCTTCCTTATCCTT 61.996 60.000 0.00 0.00 35.33 3.36
345 346 0.551396 CGGGGGCTTCCTTATCCTTT 59.449 55.000 0.00 0.00 35.33 3.11
346 347 1.772453 CGGGGGCTTCCTTATCCTTTA 59.228 52.381 0.00 0.00 35.33 1.85
347 348 2.224548 CGGGGGCTTCCTTATCCTTTAG 60.225 54.545 0.00 0.00 35.33 1.85
348 349 2.489255 GGGGGCTTCCTTATCCTTTAGC 60.489 54.545 0.00 0.00 35.33 3.09
349 350 2.495084 GGGCTTCCTTATCCTTTAGCG 58.505 52.381 0.00 0.00 0.00 4.26
350 351 2.495084 GGCTTCCTTATCCTTTAGCGG 58.505 52.381 0.00 0.00 0.00 5.52
351 352 2.158798 GGCTTCCTTATCCTTTAGCGGT 60.159 50.000 0.00 0.00 0.00 5.68
352 353 2.872858 GCTTCCTTATCCTTTAGCGGTG 59.127 50.000 0.00 0.00 0.00 4.94
353 354 3.431766 GCTTCCTTATCCTTTAGCGGTGA 60.432 47.826 0.00 0.00 0.00 4.02
354 355 4.743955 GCTTCCTTATCCTTTAGCGGTGAT 60.744 45.833 0.00 0.00 0.00 3.06
355 356 5.367945 TTCCTTATCCTTTAGCGGTGATT 57.632 39.130 0.00 0.00 0.00 2.57
356 357 6.488769 TTCCTTATCCTTTAGCGGTGATTA 57.511 37.500 0.00 0.00 0.00 1.75
357 358 6.097915 TCCTTATCCTTTAGCGGTGATTAG 57.902 41.667 0.00 0.00 0.00 1.73
358 359 5.601313 TCCTTATCCTTTAGCGGTGATTAGT 59.399 40.000 0.00 0.00 0.00 2.24
359 360 6.779049 TCCTTATCCTTTAGCGGTGATTAGTA 59.221 38.462 0.00 0.00 0.00 1.82
360 361 7.039923 TCCTTATCCTTTAGCGGTGATTAGTAG 60.040 40.741 0.00 0.00 0.00 2.57
361 362 7.255871 CCTTATCCTTTAGCGGTGATTAGTAGT 60.256 40.741 0.00 0.00 0.00 2.73
362 363 8.696043 TTATCCTTTAGCGGTGATTAGTAGTA 57.304 34.615 0.00 0.00 0.00 1.82
363 364 6.630444 TCCTTTAGCGGTGATTAGTAGTAG 57.370 41.667 0.00 0.00 0.00 2.57
364 365 6.125029 TCCTTTAGCGGTGATTAGTAGTAGT 58.875 40.000 0.00 0.00 0.00 2.73
365 366 7.282585 TCCTTTAGCGGTGATTAGTAGTAGTA 58.717 38.462 0.00 0.00 0.00 1.82
366 367 7.227512 TCCTTTAGCGGTGATTAGTAGTAGTAC 59.772 40.741 0.00 0.00 0.00 2.73
367 368 7.228308 CCTTTAGCGGTGATTAGTAGTAGTACT 59.772 40.741 14.57 14.57 42.49 2.73
368 369 7.721286 TTAGCGGTGATTAGTAGTAGTACTC 57.279 40.000 13.60 1.40 40.23 2.59
369 370 4.749099 AGCGGTGATTAGTAGTAGTACTCG 59.251 45.833 13.60 10.88 40.23 4.18
370 371 4.509600 GCGGTGATTAGTAGTAGTACTCGT 59.490 45.833 13.60 4.22 40.23 4.18
371 372 5.007136 GCGGTGATTAGTAGTAGTACTCGTT 59.993 44.000 13.60 0.63 40.23 3.85
372 373 6.201044 GCGGTGATTAGTAGTAGTACTCGTTA 59.799 42.308 13.60 0.00 40.23 3.18
373 374 7.254455 GCGGTGATTAGTAGTAGTACTCGTTAA 60.254 40.741 13.60 3.57 40.23 2.01
374 375 8.604035 CGGTGATTAGTAGTAGTACTCGTTAAA 58.396 37.037 13.60 3.21 40.23 1.52
382 383 9.889128 AGTAGTAGTACTCGTTAAAAGAGATCT 57.111 33.333 5.96 0.00 34.00 2.75
385 386 9.228949 AGTAGTACTCGTTAAAAGAGATCTTCA 57.771 33.333 14.06 0.00 38.97 3.02
388 389 9.360093 AGTACTCGTTAAAAGAGATCTTCATTG 57.640 33.333 14.06 0.00 38.97 2.82
389 390 7.066374 ACTCGTTAAAAGAGATCTTCATTGC 57.934 36.000 14.06 0.00 38.97 3.56
390 391 6.650807 ACTCGTTAAAAGAGATCTTCATTGCA 59.349 34.615 14.06 0.00 38.97 4.08
391 392 7.335422 ACTCGTTAAAAGAGATCTTCATTGCAT 59.665 33.333 14.06 0.00 38.97 3.96
392 393 7.466805 TCGTTAAAAGAGATCTTCATTGCATG 58.533 34.615 0.00 0.00 34.61 4.06
393 394 6.195983 CGTTAAAAGAGATCTTCATTGCATGC 59.804 38.462 11.82 11.82 34.61 4.06
394 395 5.654603 AAAAGAGATCTTCATTGCATGCA 57.345 34.783 18.46 18.46 34.61 3.96
395 396 5.654603 AAAGAGATCTTCATTGCATGCAA 57.345 34.783 33.57 33.57 36.36 4.08
396 397 5.854010 AAGAGATCTTCATTGCATGCAAT 57.146 34.783 34.78 34.78 46.35 3.56
397 398 6.954487 AAGAGATCTTCATTGCATGCAATA 57.046 33.333 38.08 26.24 43.92 1.90
398 399 6.954487 AGAGATCTTCATTGCATGCAATAA 57.046 33.333 38.08 26.91 43.92 1.40
399 400 7.526142 AGAGATCTTCATTGCATGCAATAAT 57.474 32.000 38.08 28.17 43.92 1.28
400 401 7.952671 AGAGATCTTCATTGCATGCAATAATT 58.047 30.769 38.08 23.50 43.92 1.40
401 402 9.074576 AGAGATCTTCATTGCATGCAATAATTA 57.925 29.630 38.08 25.84 43.92 1.40
402 403 9.687210 GAGATCTTCATTGCATGCAATAATTAA 57.313 29.630 38.08 27.41 43.92 1.40
403 404 9.692749 AGATCTTCATTGCATGCAATAATTAAG 57.307 29.630 38.08 32.57 43.92 1.85
404 405 9.687210 GATCTTCATTGCATGCAATAATTAAGA 57.313 29.630 38.08 35.20 43.92 2.10
406 407 9.872721 TCTTCATTGCATGCAATAATTAAGAAA 57.127 25.926 38.08 23.08 43.92 2.52
449 450 4.893424 TTTTCTTTCTCTTTGGTCACGG 57.107 40.909 0.00 0.00 0.00 4.94
450 451 3.553828 TTCTTTCTCTTTGGTCACGGT 57.446 42.857 0.00 0.00 0.00 4.83
451 452 2.833794 TCTTTCTCTTTGGTCACGGTG 58.166 47.619 0.56 0.56 0.00 4.94
452 453 1.264288 CTTTCTCTTTGGTCACGGTGC 59.736 52.381 2.51 0.00 0.00 5.01
453 454 0.179234 TTCTCTTTGGTCACGGTGCA 59.821 50.000 2.51 0.00 0.00 4.57
454 455 0.249868 TCTCTTTGGTCACGGTGCAG 60.250 55.000 2.51 0.00 0.00 4.41
455 456 0.249868 CTCTTTGGTCACGGTGCAGA 60.250 55.000 2.51 0.00 0.00 4.26
456 457 0.179234 TCTTTGGTCACGGTGCAGAA 59.821 50.000 2.51 0.00 0.00 3.02
457 458 0.307760 CTTTGGTCACGGTGCAGAAC 59.692 55.000 2.51 0.00 0.00 3.01
458 459 1.098712 TTTGGTCACGGTGCAGAACC 61.099 55.000 2.51 6.52 46.60 3.62
468 469 3.618690 GGTGCAGAACCTAAGATGACT 57.381 47.619 0.00 0.00 46.55 3.41
469 470 3.944087 GGTGCAGAACCTAAGATGACTT 58.056 45.455 0.00 0.00 46.55 3.01
470 471 5.086104 GGTGCAGAACCTAAGATGACTTA 57.914 43.478 0.00 0.00 46.55 2.24
471 472 4.870991 GGTGCAGAACCTAAGATGACTTAC 59.129 45.833 0.00 0.00 46.55 2.34
472 473 5.337652 GGTGCAGAACCTAAGATGACTTACT 60.338 44.000 0.00 0.00 46.55 2.24
473 474 5.808030 GTGCAGAACCTAAGATGACTTACTC 59.192 44.000 0.00 0.00 37.53 2.59
474 475 5.480422 TGCAGAACCTAAGATGACTTACTCA 59.520 40.000 0.00 0.00 37.53 3.41
475 476 5.808030 GCAGAACCTAAGATGACTTACTCAC 59.192 44.000 0.00 0.00 37.53 3.51
476 477 6.334202 CAGAACCTAAGATGACTTACTCACC 58.666 44.000 0.00 0.00 37.53 4.02
477 478 6.153680 CAGAACCTAAGATGACTTACTCACCT 59.846 42.308 0.00 0.00 37.53 4.00
478 479 7.339721 CAGAACCTAAGATGACTTACTCACCTA 59.660 40.741 0.00 0.00 37.53 3.08
479 480 7.558444 AGAACCTAAGATGACTTACTCACCTAG 59.442 40.741 0.00 0.00 37.53 3.02
480 481 6.971340 ACCTAAGATGACTTACTCACCTAGA 58.029 40.000 0.00 0.00 37.53 2.43
481 482 6.829811 ACCTAAGATGACTTACTCACCTAGAC 59.170 42.308 0.00 0.00 37.53 2.59
482 483 5.821516 AAGATGACTTACTCACCTAGACG 57.178 43.478 0.00 0.00 34.28 4.18
483 484 4.200874 AGATGACTTACTCACCTAGACGG 58.799 47.826 0.00 0.00 39.35 4.79
484 485 3.708403 TGACTTACTCACCTAGACGGA 57.292 47.619 0.00 0.00 36.31 4.69
485 486 4.232188 TGACTTACTCACCTAGACGGAT 57.768 45.455 0.00 0.00 36.31 4.18
486 487 3.945921 TGACTTACTCACCTAGACGGATG 59.054 47.826 0.00 0.00 36.31 3.51
487 488 3.288964 ACTTACTCACCTAGACGGATGG 58.711 50.000 0.00 0.00 36.31 3.51
488 489 3.053842 ACTTACTCACCTAGACGGATGGA 60.054 47.826 0.00 0.00 36.31 3.41
489 490 2.060050 ACTCACCTAGACGGATGGAG 57.940 55.000 0.00 0.00 36.10 3.86
490 491 1.285373 ACTCACCTAGACGGATGGAGT 59.715 52.381 0.00 0.00 37.37 3.85
491 492 2.508716 ACTCACCTAGACGGATGGAGTA 59.491 50.000 0.00 0.00 39.01 2.59
492 493 3.053842 ACTCACCTAGACGGATGGAGTAA 60.054 47.826 0.00 0.00 39.01 2.24
493 494 4.145807 CTCACCTAGACGGATGGAGTAAT 58.854 47.826 0.00 0.00 36.31 1.89
494 495 5.163120 ACTCACCTAGACGGATGGAGTAATA 60.163 44.000 0.00 0.00 39.01 0.98
495 496 5.698104 TCACCTAGACGGATGGAGTAATAA 58.302 41.667 0.00 0.00 36.31 1.40
496 497 6.312529 TCACCTAGACGGATGGAGTAATAAT 58.687 40.000 0.00 0.00 36.31 1.28
497 498 7.464273 TCACCTAGACGGATGGAGTAATAATA 58.536 38.462 0.00 0.00 36.31 0.98
498 499 7.946219 TCACCTAGACGGATGGAGTAATAATAA 59.054 37.037 0.00 0.00 36.31 1.40
499 500 8.750298 CACCTAGACGGATGGAGTAATAATAAT 58.250 37.037 0.00 0.00 36.31 1.28
500 501 9.986157 ACCTAGACGGATGGAGTAATAATAATA 57.014 33.333 0.00 0.00 36.31 0.98
630 632 6.019779 AGATGTCGCTTCTCAGGTTATATC 57.980 41.667 0.00 0.00 0.00 1.63
739 744 2.693871 GGGTCCCTGGGTGCATCAT 61.694 63.158 13.56 0.00 0.00 2.45
768 773 1.084370 CGACCAAGCCGATTCCAGTC 61.084 60.000 0.00 0.00 0.00 3.51
825 830 0.674895 AACATGGCCGCACTCTTCTC 60.675 55.000 0.00 0.00 0.00 2.87
852 857 5.818857 ACTACGCTTGAAGAAACCTTAAACA 59.181 36.000 0.00 0.00 0.00 2.83
853 858 5.570234 ACGCTTGAAGAAACCTTAAACAA 57.430 34.783 0.00 0.00 0.00 2.83
854 859 5.956642 ACGCTTGAAGAAACCTTAAACAAA 58.043 33.333 0.00 0.00 0.00 2.83
855 860 6.569780 ACGCTTGAAGAAACCTTAAACAAAT 58.430 32.000 0.00 0.00 0.00 2.32
907 915 2.555325 CGGGCGACACCTCTATATAACA 59.445 50.000 0.00 0.00 39.10 2.41
1015 1024 4.529769 TCCTGAGAATGCTCTTTGAGAGAA 59.470 41.667 9.06 0.00 45.07 2.87
1045 1054 2.599281 TTGGAGGAGTGACGCCGA 60.599 61.111 0.00 0.00 0.00 5.54
1552 1561 1.808945 TCGAGAAGGTCAAGGTACGTC 59.191 52.381 0.00 0.00 0.00 4.34
1554 1563 2.414293 CGAGAAGGTCAAGGTACGTCAG 60.414 54.545 0.00 0.00 0.00 3.51
1573 1582 4.443394 GTCAGGGTACGCTAATATGTTTCG 59.557 45.833 12.67 0.00 0.00 3.46
1602 1611 5.968528 ATTATCATGTACTCTCTCCGTCC 57.031 43.478 0.00 0.00 0.00 4.79
1603 1612 2.801077 TCATGTACTCTCTCCGTCCA 57.199 50.000 0.00 0.00 0.00 4.02
1604 1613 3.081710 TCATGTACTCTCTCCGTCCAA 57.918 47.619 0.00 0.00 0.00 3.53
1605 1614 3.427573 TCATGTACTCTCTCCGTCCAAA 58.572 45.455 0.00 0.00 0.00 3.28
1606 1615 3.830178 TCATGTACTCTCTCCGTCCAAAA 59.170 43.478 0.00 0.00 0.00 2.44
1607 1616 4.282449 TCATGTACTCTCTCCGTCCAAAAA 59.718 41.667 0.00 0.00 0.00 1.94
1608 1617 4.884668 TGTACTCTCTCCGTCCAAAAAT 57.115 40.909 0.00 0.00 0.00 1.82
1609 1618 5.988310 TGTACTCTCTCCGTCCAAAAATA 57.012 39.130 0.00 0.00 0.00 1.40
1610 1619 6.349243 TGTACTCTCTCCGTCCAAAAATAA 57.651 37.500 0.00 0.00 0.00 1.40
1611 1620 6.761312 TGTACTCTCTCCGTCCAAAAATAAA 58.239 36.000 0.00 0.00 0.00 1.40
1612 1621 7.391620 TGTACTCTCTCCGTCCAAAAATAAAT 58.608 34.615 0.00 0.00 0.00 1.40
1613 1622 6.743575 ACTCTCTCCGTCCAAAAATAAATG 57.256 37.500 0.00 0.00 0.00 2.32
1614 1623 6.238648 ACTCTCTCCGTCCAAAAATAAATGT 58.761 36.000 0.00 0.00 0.00 2.71
1615 1624 6.371825 ACTCTCTCCGTCCAAAAATAAATGTC 59.628 38.462 0.00 0.00 0.00 3.06
1616 1625 6.472887 TCTCTCCGTCCAAAAATAAATGTCT 58.527 36.000 0.00 0.00 0.00 3.41
1617 1626 6.594159 TCTCTCCGTCCAAAAATAAATGTCTC 59.406 38.462 0.00 0.00 0.00 3.36
1618 1627 6.234920 TCTCCGTCCAAAAATAAATGTCTCA 58.765 36.000 0.00 0.00 0.00 3.27
1619 1628 6.712998 TCTCCGTCCAAAAATAAATGTCTCAA 59.287 34.615 0.00 0.00 0.00 3.02
1620 1629 7.229707 TCTCCGTCCAAAAATAAATGTCTCAAA 59.770 33.333 0.00 0.00 0.00 2.69
1621 1630 7.142680 TCCGTCCAAAAATAAATGTCTCAAAC 58.857 34.615 0.00 0.00 0.00 2.93
1622 1631 7.013846 TCCGTCCAAAAATAAATGTCTCAAACT 59.986 33.333 0.00 0.00 0.00 2.66
1623 1632 7.651704 CCGTCCAAAAATAAATGTCTCAAACTT 59.348 33.333 0.00 0.00 0.00 2.66
1624 1633 9.672086 CGTCCAAAAATAAATGTCTCAAACTTA 57.328 29.630 0.00 0.00 0.00 2.24
1692 1701 9.965824 ACATCATACTAGTTTTTGGTTTGAAAG 57.034 29.630 0.00 0.00 0.00 2.62
1693 1702 9.410556 CATCATACTAGTTTTTGGTTTGAAAGG 57.589 33.333 0.00 0.00 0.00 3.11
1694 1703 8.754991 TCATACTAGTTTTTGGTTTGAAAGGA 57.245 30.769 0.00 0.00 0.00 3.36
1747 1756 7.548075 ACAATTGATCTTTGATCTTTGGAATGC 59.452 33.333 13.59 0.00 0.00 3.56
1770 1780 0.603065 TGTGACTCTGCAGCGTATGT 59.397 50.000 9.79 2.75 0.00 2.29
1800 1810 2.168326 TTCTTCATGCTGCGAAGACA 57.832 45.000 16.28 8.08 46.46 3.41
1832 1842 2.124236 AGGACGTCCCTAGGCTCG 60.124 66.667 30.82 17.95 45.48 5.03
2020 2033 2.417787 CCGGCTACTTGTTAGTACCACC 60.418 54.545 0.00 0.00 35.78 4.61
2106 2122 7.169308 GTCTATACTGAACATGTAACGGGATTG 59.831 40.741 12.68 11.29 0.00 2.67
2109 2125 4.000325 CTGAACATGTAACGGGATTGTCA 59.000 43.478 0.00 0.00 0.00 3.58
2111 2127 4.634004 TGAACATGTAACGGGATTGTCATC 59.366 41.667 0.00 0.00 0.00 2.92
2119 2135 2.305927 ACGGGATTGTCATCTTCAGGTT 59.694 45.455 0.00 0.00 0.00 3.50
2390 2406 2.280119 GTGCTGCTCACGTGGACA 60.280 61.111 17.00 13.11 35.76 4.02
2414 2430 0.909133 TCCTACTCAGCATGCACCCA 60.909 55.000 21.98 0.00 34.76 4.51
2432 2448 2.280797 GAGTGGCAAGACCGTGCA 60.281 61.111 9.85 0.00 46.81 4.57
2587 2603 5.069318 TCAACCACATCAGCTTGTTGATTA 58.931 37.500 0.00 0.00 40.06 1.75
2605 2621 6.017400 TGATTAGACGGACGTTTAACTTCT 57.983 37.500 9.54 0.00 29.51 2.85
2614 2630 5.260900 GGACGTTTAACTTCTTGTGTTGTC 58.739 41.667 1.79 0.00 0.00 3.18
2660 2676 6.384015 TGATCCTTTATGAAGTTCTCAGGCTA 59.616 38.462 4.17 0.00 37.52 3.93
2690 2706 1.880027 GCAACCTTGTTCAGTCGGAAT 59.120 47.619 0.00 0.00 37.93 3.01
2714 2730 4.785376 ACTTACAAGGAGATGGAGATTGGT 59.215 41.667 0.00 0.00 0.00 3.67
2837 2853 2.363795 TTCGCCGATGGGGTCTCT 60.364 61.111 0.00 0.00 38.44 3.10
2882 2898 1.785353 TTCTCCCTTTCGGTTGGGGG 61.785 60.000 7.49 4.72 45.29 5.40
2903 2919 2.203056 CGGATCTGCATCGGCCAA 60.203 61.111 2.24 0.00 40.13 4.52
2969 2985 4.536364 TCAAAGCTTTGAGTTCGAACTG 57.464 40.909 34.23 20.45 41.88 3.16
3039 3055 1.762419 GCATGGCGCACAGATAAATG 58.238 50.000 10.83 0.23 41.79 2.32
3173 3189 8.542497 TGAATAAAAGTGTGTGTATAGTGGTC 57.458 34.615 0.00 0.00 0.00 4.02
3176 3192 2.799017 AGTGTGTGTATAGTGGTCGGA 58.201 47.619 0.00 0.00 0.00 4.55
3182 3198 3.181484 TGTGTATAGTGGTCGGATTTCGG 60.181 47.826 0.00 0.00 39.77 4.30
3435 3451 9.102453 TCACTAGTATGCCTCTATTAGACTAGA 57.898 37.037 16.17 0.00 37.97 2.43
3516 3532 4.950050 ACGGGATCACATCATTAGAGAAC 58.050 43.478 0.00 0.00 0.00 3.01
3585 3601 5.275067 TGGTTTGTTGCTATTGCTTTCTT 57.725 34.783 0.00 0.00 40.48 2.52
3667 3683 6.902341 AACACTTAGTGTGCTATCAAACATG 58.098 36.000 19.33 0.00 46.79 3.21
3679 3695 8.664798 GTGCTATCAAACATGACAATGTAACTA 58.335 33.333 0.00 0.00 46.58 2.24
3680 3696 9.225436 TGCTATCAAACATGACAATGTAACTAA 57.775 29.630 0.00 0.00 46.58 2.24
3740 3756 5.048782 GTGTTTGTTGAGTTGGCATAGATCA 60.049 40.000 0.00 0.00 0.00 2.92
3909 3926 8.189460 AGTAACGAGATTGAACTAGGTATTGAC 58.811 37.037 0.00 0.00 0.00 3.18
3931 3948 0.812811 ACCGACGATCGAATCTCGGA 60.813 55.000 36.54 0.36 44.97 4.55
3945 3962 5.657474 GAATCTCGGACAAGTAACATACCA 58.343 41.667 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.127533 GTGGACGCAGGTCATGGC 61.128 66.667 0.00 0.00 45.28 4.40
24 25 2.436646 GGTGGACGCAGGTCATGG 60.437 66.667 0.00 0.00 45.28 3.66
25 26 2.815211 CGGTGGACGCAGGTCATG 60.815 66.667 0.00 0.00 45.28 3.07
26 27 4.082523 CCGGTGGACGCAGGTCAT 62.083 66.667 0.00 0.00 45.28 3.06
64 65 3.303928 GTAGGCCGGATCCCCTCG 61.304 72.222 12.47 0.00 32.65 4.63
65 66 2.923568 GGTAGGCCGGATCCCCTC 60.924 72.222 12.47 5.65 32.65 4.30
66 67 3.449126 AGGTAGGCCGGATCCCCT 61.449 66.667 5.05 13.50 40.50 4.79
67 68 2.923568 GAGGTAGGCCGGATCCCC 60.924 72.222 5.05 2.04 40.50 4.81
68 69 2.122989 TGAGGTAGGCCGGATCCC 60.123 66.667 5.05 0.00 40.50 3.85
69 70 2.508751 GGTGAGGTAGGCCGGATCC 61.509 68.421 5.05 0.00 40.50 3.36
70 71 2.857744 CGGTGAGGTAGGCCGGATC 61.858 68.421 5.05 0.00 41.60 3.36
71 72 2.838225 CGGTGAGGTAGGCCGGAT 60.838 66.667 5.05 0.00 41.60 4.18
72 73 4.051167 TCGGTGAGGTAGGCCGGA 62.051 66.667 5.05 0.00 44.97 5.14
73 74 3.834799 GTCGGTGAGGTAGGCCGG 61.835 72.222 0.00 0.00 44.97 6.13
74 75 4.189188 CGTCGGTGAGGTAGGCCG 62.189 72.222 0.00 0.00 46.12 6.13
75 76 2.753043 TCGTCGGTGAGGTAGGCC 60.753 66.667 0.00 0.00 0.00 5.19
76 77 2.799371 CTCGTCGGTGAGGTAGGC 59.201 66.667 0.00 0.00 32.18 3.93
77 78 2.044555 TGCTCGTCGGTGAGGTAGG 61.045 63.158 6.90 0.00 36.47 3.18
78 79 1.136984 GTGCTCGTCGGTGAGGTAG 59.863 63.158 6.90 0.00 36.47 3.18
79 80 1.303074 AGTGCTCGTCGGTGAGGTA 60.303 57.895 6.90 0.00 36.47 3.08
80 81 2.597805 AGTGCTCGTCGGTGAGGT 60.598 61.111 6.90 0.00 36.47 3.85
81 82 2.179517 GAGTGCTCGTCGGTGAGG 59.820 66.667 6.90 0.00 36.47 3.86
82 83 2.179517 GGAGTGCTCGTCGGTGAG 59.820 66.667 0.00 1.05 39.05 3.51
83 84 3.371063 GGGAGTGCTCGTCGGTGA 61.371 66.667 0.00 0.00 0.00 4.02
84 85 4.436998 GGGGAGTGCTCGTCGGTG 62.437 72.222 0.00 0.00 0.00 4.94
137 138 4.593864 GTCCGGATCTGAGGCGGC 62.594 72.222 7.81 0.00 0.00 6.53
138 139 3.917760 GGTCCGGATCTGAGGCGG 61.918 72.222 7.81 1.64 0.00 6.13
139 140 3.917760 GGGTCCGGATCTGAGGCG 61.918 72.222 15.87 0.00 0.00 5.52
140 141 2.444895 AGGGTCCGGATCTGAGGC 60.445 66.667 15.87 0.00 0.00 4.70
141 142 1.075970 TGAGGGTCCGGATCTGAGG 60.076 63.158 15.87 0.00 0.00 3.86
142 143 1.395826 GGTGAGGGTCCGGATCTGAG 61.396 65.000 15.87 0.00 0.00 3.35
143 144 1.381327 GGTGAGGGTCCGGATCTGA 60.381 63.158 15.87 3.63 0.00 3.27
144 145 1.685765 TGGTGAGGGTCCGGATCTG 60.686 63.158 15.87 0.00 0.00 2.90
145 146 1.686110 GTGGTGAGGGTCCGGATCT 60.686 63.158 15.87 12.36 0.00 2.75
146 147 2.732619 GGTGGTGAGGGTCCGGATC 61.733 68.421 7.81 6.88 0.00 3.36
147 148 2.687566 GGTGGTGAGGGTCCGGAT 60.688 66.667 7.81 0.00 0.00 4.18
150 151 2.781595 CTTTCGGTGGTGAGGGTCCG 62.782 65.000 0.00 0.00 43.65 4.79
151 152 1.003718 CTTTCGGTGGTGAGGGTCC 60.004 63.158 0.00 0.00 0.00 4.46
152 153 1.003718 CCTTTCGGTGGTGAGGGTC 60.004 63.158 0.00 0.00 0.00 4.46
153 154 2.526046 CCCTTTCGGTGGTGAGGGT 61.526 63.158 0.00 0.00 43.18 4.34
154 155 2.351276 CCCTTTCGGTGGTGAGGG 59.649 66.667 0.00 0.00 42.66 4.30
155 156 1.296715 CTCCCTTTCGGTGGTGAGG 59.703 63.158 0.00 0.00 0.00 3.86
156 157 1.376037 GCTCCCTTTCGGTGGTGAG 60.376 63.158 0.00 0.00 0.00 3.51
157 158 2.747686 GCTCCCTTTCGGTGGTGA 59.252 61.111 0.00 0.00 0.00 4.02
158 159 2.742372 CGCTCCCTTTCGGTGGTG 60.742 66.667 0.00 0.00 0.00 4.17
159 160 4.016706 CCGCTCCCTTTCGGTGGT 62.017 66.667 0.00 0.00 40.72 4.16
164 165 2.202623 CGAGACCGCTCCCTTTCG 60.203 66.667 0.00 0.00 37.91 3.46
215 216 2.897350 GAGGAATGGCCGGCGAAG 60.897 66.667 22.54 0.00 43.43 3.79
216 217 4.483243 GGAGGAATGGCCGGCGAA 62.483 66.667 22.54 12.25 43.43 4.70
242 243 4.400251 ACCTCCCTCCCCACCTCG 62.400 72.222 0.00 0.00 0.00 4.63
243 244 2.689034 CACCTCCCTCCCCACCTC 60.689 72.222 0.00 0.00 0.00 3.85
244 245 4.354943 CCACCTCCCTCCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
246 247 3.883822 TTCCCACCTCCCTCCCCAC 62.884 68.421 0.00 0.00 0.00 4.61
247 248 3.547737 TTCCCACCTCCCTCCCCA 61.548 66.667 0.00 0.00 0.00 4.96
248 249 2.692741 CTTCCCACCTCCCTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
249 250 2.692741 CCTTCCCACCTCCCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
250 251 2.692741 CCCTTCCCACCTCCCTCC 60.693 72.222 0.00 0.00 0.00 4.30
251 252 2.125225 ACCCTTCCCACCTCCCTC 59.875 66.667 0.00 0.00 0.00 4.30
252 253 1.757508 TACACCCTTCCCACCTCCCT 61.758 60.000 0.00 0.00 0.00 4.20
253 254 0.843343 TTACACCCTTCCCACCTCCC 60.843 60.000 0.00 0.00 0.00 4.30
254 255 0.618981 CTTACACCCTTCCCACCTCC 59.381 60.000 0.00 0.00 0.00 4.30
255 256 0.618981 CCTTACACCCTTCCCACCTC 59.381 60.000 0.00 0.00 0.00 3.85
256 257 1.498176 GCCTTACACCCTTCCCACCT 61.498 60.000 0.00 0.00 0.00 4.00
257 258 1.001269 GCCTTACACCCTTCCCACC 60.001 63.158 0.00 0.00 0.00 4.61
258 259 1.376812 CGCCTTACACCCTTCCCAC 60.377 63.158 0.00 0.00 0.00 4.61
259 260 3.074281 CGCCTTACACCCTTCCCA 58.926 61.111 0.00 0.00 0.00 4.37
260 261 2.437895 GCGCCTTACACCCTTCCC 60.438 66.667 0.00 0.00 0.00 3.97
261 262 2.437895 GGCGCCTTACACCCTTCC 60.438 66.667 22.15 0.00 0.00 3.46
262 263 2.818274 CGGCGCCTTACACCCTTC 60.818 66.667 26.68 0.00 0.00 3.46
263 264 4.404098 CCGGCGCCTTACACCCTT 62.404 66.667 26.68 0.00 0.00 3.95
265 266 4.171103 ATCCGGCGCCTTACACCC 62.171 66.667 26.68 0.00 0.00 4.61
266 267 2.588034 GATCCGGCGCCTTACACC 60.588 66.667 26.68 4.72 0.00 4.16
267 268 1.883084 CAGATCCGGCGCCTTACAC 60.883 63.158 26.68 11.86 0.00 2.90
268 269 2.499205 CAGATCCGGCGCCTTACA 59.501 61.111 26.68 5.30 0.00 2.41
269 270 2.280186 CCAGATCCGGCGCCTTAC 60.280 66.667 26.68 12.96 0.00 2.34
270 271 3.546543 CCCAGATCCGGCGCCTTA 61.547 66.667 26.68 12.95 0.00 2.69
322 323 2.990830 GATAAGGAAGCCCCCGCGTC 62.991 65.000 4.92 0.00 42.14 5.19
323 324 3.087906 ATAAGGAAGCCCCCGCGT 61.088 61.111 4.92 0.00 41.18 6.01
324 325 2.280865 GATAAGGAAGCCCCCGCG 60.281 66.667 0.00 0.00 41.18 6.46
325 326 1.996070 AAGGATAAGGAAGCCCCCGC 61.996 60.000 0.00 0.00 34.66 6.13
326 327 0.551396 AAAGGATAAGGAAGCCCCCG 59.449 55.000 0.00 0.00 34.66 5.73
327 328 2.489255 GCTAAAGGATAAGGAAGCCCCC 60.489 54.545 0.00 0.00 34.66 5.40
328 329 2.810767 CGCTAAAGGATAAGGAAGCCCC 60.811 54.545 0.00 0.00 0.00 5.80
329 330 2.495084 CGCTAAAGGATAAGGAAGCCC 58.505 52.381 0.00 0.00 0.00 5.19
330 331 2.158798 ACCGCTAAAGGATAAGGAAGCC 60.159 50.000 0.00 0.00 34.73 4.35
331 332 2.872858 CACCGCTAAAGGATAAGGAAGC 59.127 50.000 0.00 0.00 34.73 3.86
332 333 4.402056 TCACCGCTAAAGGATAAGGAAG 57.598 45.455 0.00 0.00 34.73 3.46
333 334 5.367945 AATCACCGCTAAAGGATAAGGAA 57.632 39.130 0.00 0.00 34.73 3.36
334 335 5.601313 ACTAATCACCGCTAAAGGATAAGGA 59.399 40.000 0.00 0.00 34.73 3.36
335 336 5.855045 ACTAATCACCGCTAAAGGATAAGG 58.145 41.667 0.00 0.00 34.73 2.69
336 337 7.659186 ACTACTAATCACCGCTAAAGGATAAG 58.341 38.462 0.00 0.00 34.73 1.73
337 338 7.592885 ACTACTAATCACCGCTAAAGGATAA 57.407 36.000 0.00 0.00 34.73 1.75
338 339 7.941238 ACTACTACTAATCACCGCTAAAGGATA 59.059 37.037 0.00 0.00 34.73 2.59
339 340 6.776603 ACTACTACTAATCACCGCTAAAGGAT 59.223 38.462 0.00 0.00 34.73 3.24
340 341 6.125029 ACTACTACTAATCACCGCTAAAGGA 58.875 40.000 0.00 0.00 34.73 3.36
341 342 6.388435 ACTACTACTAATCACCGCTAAAGG 57.612 41.667 0.00 0.00 37.30 3.11
342 343 8.152309 AGTACTACTACTAATCACCGCTAAAG 57.848 38.462 0.00 0.00 30.81 1.85
343 344 7.042456 CGAGTACTACTACTAATCACCGCTAAA 60.042 40.741 0.00 0.00 32.96 1.85
344 345 6.422100 CGAGTACTACTACTAATCACCGCTAA 59.578 42.308 0.00 0.00 32.96 3.09
345 346 5.923114 CGAGTACTACTACTAATCACCGCTA 59.077 44.000 0.00 0.00 32.96 4.26
346 347 4.749099 CGAGTACTACTACTAATCACCGCT 59.251 45.833 0.00 0.00 32.96 5.52
347 348 4.509600 ACGAGTACTACTACTAATCACCGC 59.490 45.833 0.00 0.00 32.96 5.68
348 349 6.595772 AACGAGTACTACTACTAATCACCG 57.404 41.667 0.00 0.00 32.96 4.94
356 357 9.889128 AGATCTCTTTTAACGAGTACTACTACT 57.111 33.333 0.00 0.00 35.77 2.57
359 360 9.228949 TGAAGATCTCTTTTAACGAGTACTACT 57.771 33.333 0.00 0.00 36.11 2.57
362 363 9.360093 CAATGAAGATCTCTTTTAACGAGTACT 57.640 33.333 0.00 0.00 36.11 2.73
363 364 8.111224 GCAATGAAGATCTCTTTTAACGAGTAC 58.889 37.037 0.00 0.00 36.11 2.73
364 365 7.817478 TGCAATGAAGATCTCTTTTAACGAGTA 59.183 33.333 0.00 0.00 36.11 2.59
365 366 6.650807 TGCAATGAAGATCTCTTTTAACGAGT 59.349 34.615 0.00 0.00 36.11 4.18
366 367 7.065216 TGCAATGAAGATCTCTTTTAACGAG 57.935 36.000 0.00 0.00 36.11 4.18
367 368 7.615582 ATGCAATGAAGATCTCTTTTAACGA 57.384 32.000 0.00 0.00 36.11 3.85
427 428 4.703093 ACCGTGACCAAAGAGAAAGAAAAA 59.297 37.500 0.00 0.00 0.00 1.94
428 429 4.095782 CACCGTGACCAAAGAGAAAGAAAA 59.904 41.667 0.00 0.00 0.00 2.29
429 430 3.625764 CACCGTGACCAAAGAGAAAGAAA 59.374 43.478 0.00 0.00 0.00 2.52
430 431 3.202906 CACCGTGACCAAAGAGAAAGAA 58.797 45.455 0.00 0.00 0.00 2.52
431 432 2.833794 CACCGTGACCAAAGAGAAAGA 58.166 47.619 0.00 0.00 0.00 2.52
432 433 1.264288 GCACCGTGACCAAAGAGAAAG 59.736 52.381 1.65 0.00 0.00 2.62
433 434 1.305201 GCACCGTGACCAAAGAGAAA 58.695 50.000 1.65 0.00 0.00 2.52
434 435 0.179234 TGCACCGTGACCAAAGAGAA 59.821 50.000 1.65 0.00 0.00 2.87
435 436 0.249868 CTGCACCGTGACCAAAGAGA 60.250 55.000 1.65 0.00 0.00 3.10
436 437 0.249868 TCTGCACCGTGACCAAAGAG 60.250 55.000 1.65 0.00 0.00 2.85
437 438 0.179234 TTCTGCACCGTGACCAAAGA 59.821 50.000 1.65 0.00 0.00 2.52
438 439 0.307760 GTTCTGCACCGTGACCAAAG 59.692 55.000 1.65 0.00 0.00 2.77
439 440 1.098712 GGTTCTGCACCGTGACCAAA 61.099 55.000 1.65 0.00 35.12 3.28
440 441 1.525077 GGTTCTGCACCGTGACCAA 60.525 57.895 1.65 0.00 35.12 3.67
441 442 2.110213 GGTTCTGCACCGTGACCA 59.890 61.111 1.65 0.00 35.12 4.02
445 446 8.724095 TAAGTCATCTTAGGTTCTGCACCGTG 62.724 46.154 0.00 0.00 41.54 4.94
446 447 6.791580 TAAGTCATCTTAGGTTCTGCACCGT 61.792 44.000 0.00 0.00 41.54 4.83
447 448 4.381612 TAAGTCATCTTAGGTTCTGCACCG 60.382 45.833 0.00 0.00 41.54 4.94
448 449 4.870991 GTAAGTCATCTTAGGTTCTGCACC 59.129 45.833 0.00 0.00 39.22 5.01
449 450 5.725362 AGTAAGTCATCTTAGGTTCTGCAC 58.275 41.667 0.00 0.00 36.90 4.57
450 451 5.480422 TGAGTAAGTCATCTTAGGTTCTGCA 59.520 40.000 0.00 0.00 36.90 4.41
451 452 5.808030 GTGAGTAAGTCATCTTAGGTTCTGC 59.192 44.000 0.00 0.00 37.56 4.26
452 453 6.153680 AGGTGAGTAAGTCATCTTAGGTTCTG 59.846 42.308 0.00 0.00 45.09 3.02
453 454 6.257586 AGGTGAGTAAGTCATCTTAGGTTCT 58.742 40.000 0.00 0.00 45.09 3.01
454 455 6.532988 AGGTGAGTAAGTCATCTTAGGTTC 57.467 41.667 0.00 0.00 45.09 3.62
455 456 7.339976 GTCTAGGTGAGTAAGTCATCTTAGGTT 59.660 40.741 0.00 0.00 45.09 3.50
456 457 6.829811 GTCTAGGTGAGTAAGTCATCTTAGGT 59.170 42.308 0.00 0.00 45.09 3.08
457 458 6.017770 CGTCTAGGTGAGTAAGTCATCTTAGG 60.018 46.154 0.00 0.00 45.09 2.69
458 459 6.017770 CCGTCTAGGTGAGTAAGTCATCTTAG 60.018 46.154 0.00 0.00 45.09 2.18
459 460 5.821470 CCGTCTAGGTGAGTAAGTCATCTTA 59.179 44.000 0.00 0.00 45.09 2.10
460 461 4.641094 CCGTCTAGGTGAGTAAGTCATCTT 59.359 45.833 0.00 0.00 45.09 2.40
462 463 4.197750 TCCGTCTAGGTGAGTAAGTCATC 58.802 47.826 0.00 0.00 41.99 2.92
463 464 4.232188 TCCGTCTAGGTGAGTAAGTCAT 57.768 45.455 0.00 0.00 41.99 3.06
464 465 3.708403 TCCGTCTAGGTGAGTAAGTCA 57.292 47.619 0.00 0.00 41.99 3.41
465 466 3.315749 CCATCCGTCTAGGTGAGTAAGTC 59.684 52.174 0.00 0.00 41.99 3.01
466 467 3.053842 TCCATCCGTCTAGGTGAGTAAGT 60.054 47.826 0.00 0.00 41.99 2.24
467 468 3.552875 TCCATCCGTCTAGGTGAGTAAG 58.447 50.000 0.00 0.00 41.99 2.34
468 469 3.053842 ACTCCATCCGTCTAGGTGAGTAA 60.054 47.826 0.00 0.00 40.17 2.24
469 470 2.508716 ACTCCATCCGTCTAGGTGAGTA 59.491 50.000 0.00 0.00 40.17 2.59
470 471 1.285373 ACTCCATCCGTCTAGGTGAGT 59.715 52.381 0.00 0.00 41.99 3.41
471 472 2.060050 ACTCCATCCGTCTAGGTGAG 57.940 55.000 0.00 0.00 41.99 3.51
472 473 3.657398 TTACTCCATCCGTCTAGGTGA 57.343 47.619 0.00 0.00 41.99 4.02
473 474 6.591750 ATTATTACTCCATCCGTCTAGGTG 57.408 41.667 0.00 0.00 41.99 4.00
474 475 8.896722 ATTATTATTACTCCATCCGTCTAGGT 57.103 34.615 0.00 0.00 41.99 3.08
630 632 2.357517 GACACCGTCCCACTGCAG 60.358 66.667 13.48 13.48 0.00 4.41
739 744 1.599606 GGCTTGGTCGAGCTGAGAGA 61.600 60.000 16.64 0.00 42.32 3.10
768 773 3.412386 ACTTGGTGGAGAAGAAATTCCG 58.588 45.455 0.00 0.00 36.22 4.30
825 830 3.131396 AGGTTTCTTCAAGCGTAGTGTG 58.869 45.455 0.00 0.00 37.99 3.82
852 857 3.384467 CCTTGGATCGTGCCCATTTATTT 59.616 43.478 0.00 0.00 33.04 1.40
853 858 2.958355 CCTTGGATCGTGCCCATTTATT 59.042 45.455 0.00 0.00 33.04 1.40
854 859 2.174639 TCCTTGGATCGTGCCCATTTAT 59.825 45.455 0.00 0.00 33.04 1.40
855 860 1.562008 TCCTTGGATCGTGCCCATTTA 59.438 47.619 0.00 0.00 33.04 1.40
907 915 2.285069 TACGGTGGTGGGCCTCAT 60.285 61.111 4.53 0.00 35.27 2.90
1015 1024 1.377725 CTCCAAGAACCGCCATGCT 60.378 57.895 0.00 0.00 0.00 3.79
1449 1458 3.130160 CCTTCGGCCAGCAGCTTC 61.130 66.667 2.24 0.00 43.05 3.86
1521 1530 1.807573 CTTCTCGAGCTGGAACGCC 60.808 63.158 7.81 0.00 0.00 5.68
1552 1561 4.365723 ACGAAACATATTAGCGTACCCTG 58.634 43.478 0.00 0.00 32.94 4.45
1554 1563 8.693542 AATATACGAAACATATTAGCGTACCC 57.306 34.615 0.00 0.00 39.78 3.69
1588 1597 7.333672 ACATTTATTTTTGGACGGAGAGAGTAC 59.666 37.037 0.00 0.00 0.00 2.73
1594 1603 6.234920 TGAGACATTTATTTTTGGACGGAGA 58.765 36.000 0.00 0.00 0.00 3.71
1595 1604 6.494893 TGAGACATTTATTTTTGGACGGAG 57.505 37.500 0.00 0.00 0.00 4.63
1596 1605 6.885952 TTGAGACATTTATTTTTGGACGGA 57.114 33.333 0.00 0.00 0.00 4.69
1597 1606 7.145323 AGTTTGAGACATTTATTTTTGGACGG 58.855 34.615 0.00 0.00 0.00 4.79
1598 1607 8.574196 AAGTTTGAGACATTTATTTTTGGACG 57.426 30.769 0.00 0.00 0.00 4.79
1634 1643 8.314751 TGTTTCATACTTCCTTTGTTCCAAAAA 58.685 29.630 0.00 0.00 0.00 1.94
1635 1644 7.841956 TGTTTCATACTTCCTTTGTTCCAAAA 58.158 30.769 0.00 0.00 0.00 2.44
1636 1645 7.411486 TGTTTCATACTTCCTTTGTTCCAAA 57.589 32.000 0.00 0.00 0.00 3.28
1637 1646 7.595819 ATGTTTCATACTTCCTTTGTTCCAA 57.404 32.000 0.00 0.00 0.00 3.53
1638 1647 7.595819 AATGTTTCATACTTCCTTTGTTCCA 57.404 32.000 0.00 0.00 0.00 3.53
1639 1648 9.974980 TTAAATGTTTCATACTTCCTTTGTTCC 57.025 29.630 0.00 0.00 0.00 3.62
1675 1684 9.726438 TTTCAAATCCTTTCAAACCAAAAACTA 57.274 25.926 0.00 0.00 0.00 2.24
1686 1695 9.527157 TGTATATCACCTTTCAAATCCTTTCAA 57.473 29.630 0.00 0.00 0.00 2.69
1687 1696 9.177608 CTGTATATCACCTTTCAAATCCTTTCA 57.822 33.333 0.00 0.00 0.00 2.69
1688 1697 9.178758 ACTGTATATCACCTTTCAAATCCTTTC 57.821 33.333 0.00 0.00 0.00 2.62
1689 1698 8.960591 CACTGTATATCACCTTTCAAATCCTTT 58.039 33.333 0.00 0.00 0.00 3.11
1690 1699 8.109634 ACACTGTATATCACCTTTCAAATCCTT 58.890 33.333 0.00 0.00 0.00 3.36
1691 1700 7.633789 ACACTGTATATCACCTTTCAAATCCT 58.366 34.615 0.00 0.00 0.00 3.24
1692 1701 7.865706 ACACTGTATATCACCTTTCAAATCC 57.134 36.000 0.00 0.00 0.00 3.01
1693 1702 9.378551 TGTACACTGTATATCACCTTTCAAATC 57.621 33.333 0.00 0.00 0.00 2.17
1694 1703 9.905713 ATGTACACTGTATATCACCTTTCAAAT 57.094 29.630 0.00 0.00 0.00 2.32
1711 1720 9.926751 GATCAAAGATCAATTGTATGTACACTG 57.073 33.333 5.13 0.00 35.64 3.66
1731 1740 3.056678 ACATGCGCATTCCAAAGATCAAA 60.057 39.130 22.81 0.00 0.00 2.69
1747 1756 2.783275 GCTGCAGAGTCACATGCG 59.217 61.111 20.43 0.00 45.54 4.73
1770 1780 0.039617 CATGAAGAAAACGCCGGCAA 60.040 50.000 28.98 0.00 0.00 4.52
1800 1810 2.501723 ACGTCCTCCATCTGCTAACAAT 59.498 45.455 0.00 0.00 0.00 2.71
1832 1842 1.372087 CCAGCTCGCATGAACCCTTC 61.372 60.000 0.00 0.00 0.00 3.46
2106 2122 2.783135 TGGCAAGAACCTGAAGATGAC 58.217 47.619 0.00 0.00 0.00 3.06
2109 2125 2.158475 TGGTTGGCAAGAACCTGAAGAT 60.158 45.455 0.00 0.00 45.07 2.40
2111 2127 1.610522 CTGGTTGGCAAGAACCTGAAG 59.389 52.381 0.00 0.00 45.07 3.02
2119 2135 2.426738 CTGTTGTTTCTGGTTGGCAAGA 59.573 45.455 0.00 0.00 0.00 3.02
2131 2147 4.771590 TGATGCATCCTTCTGTTGTTTC 57.228 40.909 23.67 0.00 0.00 2.78
2233 2249 0.669318 TAAGCCAAGCAAGTCGTCCG 60.669 55.000 0.00 0.00 0.00 4.79
2366 2382 2.661866 GTGAGCAGCACGGACGTT 60.662 61.111 0.00 0.00 37.83 3.99
2390 2406 3.474600 GTGCATGCTGAGTAGGATCATT 58.525 45.455 20.33 0.00 32.01 2.57
2414 2430 2.031163 GCACGGTCTTGCCACTCT 59.969 61.111 0.00 0.00 36.42 3.24
2432 2448 1.296523 AGACCCATGATCTCCTCCCTT 59.703 52.381 0.00 0.00 0.00 3.95
2587 2603 3.800506 CACAAGAAGTTAAACGTCCGTCT 59.199 43.478 0.00 0.00 0.00 4.18
2605 2621 2.020720 ACAATTGCCGAGACAACACAA 58.979 42.857 5.05 0.00 31.03 3.33
2614 2630 1.338674 TGGTCACCTACAATTGCCGAG 60.339 52.381 5.05 0.41 0.00 4.63
2660 2676 3.723922 AAGGTTGCCGGCGGGTAT 61.724 61.111 29.48 4.80 34.97 2.73
2690 2706 5.964477 ACCAATCTCCATCTCCTTGTAAGTA 59.036 40.000 0.00 0.00 0.00 2.24
2714 2730 1.133823 CCAGCAGGGTATGTTATGCCA 60.134 52.381 0.00 0.00 39.51 4.92
2837 2853 4.209538 CACCTGAATCATTGGATGCCTTA 58.790 43.478 0.00 0.00 32.92 2.69
2882 2898 2.969238 CCGATGCAGATCCGTGGC 60.969 66.667 0.00 0.00 0.00 5.01
2903 2919 2.033424 GGCTTCAAGAAGTGCGAAGTTT 59.967 45.455 11.14 0.00 40.45 2.66
2969 2985 1.002250 CATGACTATACGACGGCGCC 61.002 60.000 19.07 19.07 42.48 6.53
3026 3042 7.413475 AATAGCTCTAACATTTATCTGTGCG 57.587 36.000 0.00 0.00 0.00 5.34
3067 3083 5.419239 TCATACATGATGGTGAGACAACA 57.581 39.130 0.00 0.00 34.75 3.33
3068 3084 9.363763 CTATATCATACATGATGGTGAGACAAC 57.636 37.037 13.75 0.00 46.34 3.32
3076 3092 9.662947 CACATTCACTATATCATACATGATGGT 57.337 33.333 13.75 7.80 46.34 3.55
3112 3128 8.596271 TCTATCAAAACAGAACGTCAAACATA 57.404 30.769 0.00 0.00 0.00 2.29
3121 3137 7.530010 ACCATGAAATCTATCAAAACAGAACG 58.470 34.615 0.00 0.00 32.06 3.95
3173 3189 1.732259 CTGAGTGAAACCCGAAATCCG 59.268 52.381 0.00 0.00 37.80 4.18
3176 3192 4.755123 CAGTAACTGAGTGAAACCCGAAAT 59.245 41.667 0.00 0.00 37.80 2.17
3182 3198 4.152580 GCTTAGCAGTAACTGAGTGAAACC 59.847 45.833 0.00 0.00 31.38 3.27
3350 3366 8.502105 AAGTTTCCGGTTAATACAATTCTAGG 57.498 34.615 0.00 0.00 0.00 3.02
3380 3396 9.586435 CTCTGTTTGTCTATGTATTCACACATA 57.414 33.333 0.00 0.00 39.77 2.29
3435 3451 7.572523 ACATAACCATCATTGATTCAACGAT 57.427 32.000 2.24 2.24 25.72 3.73
3516 3532 2.698803 TGGGTCAAGTCAATCACATCG 58.301 47.619 0.00 0.00 0.00 3.84
3740 3756 5.187967 ACTCGGAGTGACAAATCCTAATCTT 59.812 40.000 10.41 0.00 33.12 2.40
3787 3803 3.610040 AGTGATGTGCATTACCGAGAA 57.390 42.857 0.00 0.00 0.00 2.87
3909 3926 2.496926 CGAGATTCGATCGTCGGTATG 58.503 52.381 15.94 0.00 43.74 2.39
3931 3948 6.208599 CCCTTTGTCATTGGTATGTTACTTGT 59.791 38.462 0.00 0.00 33.34 3.16
3945 3962 6.036735 CGATATACGTTGTTCCCTTTGTCATT 59.963 38.462 0.00 0.00 37.22 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.