Multiple sequence alignment - TraesCS3A01G228000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G228000 chr3A 100.000 9907 0 0 1 9907 426873497 426863591 0.000000e+00 18295.0
1 TraesCS3A01G228000 chr3A 91.837 98 8 0 9611 9708 511994244 511994147 4.830000e-28 137.0
2 TraesCS3A01G228000 chr3D 93.894 2686 87 42 39 2688 307226196 307228840 0.000000e+00 3980.0
3 TraesCS3A01G228000 chr3D 95.446 1581 60 11 5809 7381 307229873 307231449 0.000000e+00 2510.0
4 TraesCS3A01G228000 chr3D 97.482 1231 24 2 8158 9381 307232357 307233587 0.000000e+00 2095.0
5 TraesCS3A01G228000 chr3D 93.439 945 54 5 2687 3625 307228934 307229876 0.000000e+00 1395.0
6 TraesCS3A01G228000 chr3D 90.037 803 42 4 7382 8152 307231487 307232283 0.000000e+00 1005.0
7 TraesCS3A01G228000 chr3D 94.810 501 23 2 9408 9907 307233588 307234086 0.000000e+00 778.0
8 TraesCS3A01G228000 chr3D 84.027 601 79 9 3681 4278 41420909 41420323 6.720000e-156 562.0
9 TraesCS3A01G228000 chr3D 85.221 521 54 15 5265 5772 302226220 302226730 1.910000e-141 514.0
10 TraesCS3A01G228000 chr3D 83.755 554 72 7 3682 4222 427287518 427288066 8.880000e-140 508.0
11 TraesCS3A01G228000 chr3D 84.302 516 59 13 5265 5766 580981189 580981696 1.500000e-132 484.0
12 TraesCS3A01G228000 chr3D 83.592 451 57 8 3689 4124 300122131 300122579 3.330000e-109 407.0
13 TraesCS3A01G228000 chr3D 84.759 374 57 0 3914 4287 413650167 413650540 9.390000e-100 375.0
14 TraesCS3A01G228000 chr3D 98.148 54 1 0 3623 3676 600829591 600829644 2.950000e-15 95.3
15 TraesCS3A01G228000 chr3B 92.813 2588 124 31 140 2688 414027107 414024543 0.000000e+00 3692.0
16 TraesCS3A01G228000 chr3B 95.693 1579 57 10 5809 7381 414023510 414021937 0.000000e+00 2529.0
17 TraesCS3A01G228000 chr3B 96.870 1278 36 3 8158 9432 414021116 414019840 0.000000e+00 2135.0
18 TraesCS3A01G228000 chr3B 93.552 946 51 6 2687 3625 414024449 414023507 0.000000e+00 1400.0
19 TraesCS3A01G228000 chr3B 87.391 690 38 15 7382 8035 414021899 414021223 0.000000e+00 747.0
20 TraesCS3A01G228000 chr3B 90.452 199 11 3 9710 9900 414019415 414019217 1.280000e-63 255.0
21 TraesCS3A01G228000 chr3B 95.031 161 8 0 9423 9583 414019629 414019469 4.590000e-63 254.0
22 TraesCS3A01G228000 chr3B 92.683 41 3 0 8112 8152 414021230 414021190 1.070000e-04 60.2
23 TraesCS3A01G228000 chr7D 95.961 916 33 4 4290 5202 306449851 306448937 0.000000e+00 1483.0
24 TraesCS3A01G228000 chr7D 90.909 55 5 0 5210 5264 559270357 559270411 3.840000e-09 75.0
25 TraesCS3A01G228000 chr2A 95.243 925 39 5 4284 5204 327117240 327118163 0.000000e+00 1459.0
26 TraesCS3A01G228000 chr2A 91.176 102 9 0 9605 9706 575605441 575605542 1.340000e-28 139.0
27 TraesCS3A01G228000 chr2A 98.148 54 1 0 3623 3676 666033963 666034016 2.950000e-15 95.3
28 TraesCS3A01G228000 chr4B 95.140 926 40 5 4284 5205 303977608 303976684 0.000000e+00 1456.0
29 TraesCS3A01G228000 chr4B 92.857 98 7 0 9608 9705 450474627 450474530 1.040000e-29 143.0
30 TraesCS3A01G228000 chr4B 94.828 58 3 0 5210 5267 135206247 135206190 3.810000e-14 91.6
31 TraesCS3A01G228000 chrUn 95.043 928 41 5 4284 5207 222702346 222701420 0.000000e+00 1454.0
32 TraesCS3A01G228000 chrUn 94.941 929 41 6 4284 5207 158527946 158527019 0.000000e+00 1450.0
33 TraesCS3A01G228000 chrUn 94.844 931 42 6 4284 5209 145774887 145775816 0.000000e+00 1448.0
34 TraesCS3A01G228000 chr2B 95.135 925 40 5 4284 5204 351608588 351609511 0.000000e+00 1454.0
35 TraesCS3A01G228000 chr2B 94.563 938 44 7 4284 5217 353340561 353339627 0.000000e+00 1443.0
36 TraesCS3A01G228000 chr2B 84.667 600 82 6 3694 4287 563692264 563691669 3.080000e-164 590.0
37 TraesCS3A01G228000 chr2B 92.000 50 4 0 5210 5259 654364875 654364924 4.960000e-08 71.3
38 TraesCS3A01G228000 chr5A 94.652 935 45 5 4290 5221 248635905 248636837 0.000000e+00 1445.0
39 TraesCS3A01G228000 chr6D 84.615 624 75 11 3680 4287 394213570 394212952 1.420000e-167 601.0
40 TraesCS3A01G228000 chr6D 82.943 598 91 7 3694 4285 262435873 262435281 6.810000e-146 529.0
41 TraesCS3A01G228000 chr6D 94.898 98 5 0 9608 9705 269701594 269701497 4.790000e-33 154.0
42 TraesCS3A01G228000 chr6D 100.000 52 0 0 3625 3676 262299501 262299552 8.190000e-16 97.1
43 TraesCS3A01G228000 chr1D 83.824 612 86 7 3681 4288 299761785 299762387 4.020000e-158 569.0
44 TraesCS3A01G228000 chr1D 79.264 299 44 15 3102 3396 480890684 480890968 1.020000e-44 193.0
45 TraesCS3A01G228000 chr4D 85.659 516 56 9 5265 5773 47558206 47558710 2.450000e-145 527.0
46 TraesCS3A01G228000 chr4D 96.552 58 2 0 3622 3679 359676653 359676596 8.190000e-16 97.1
47 TraesCS3A01G228000 chr4D 94.545 55 3 0 5210 5264 63813730 63813784 1.770000e-12 86.1
48 TraesCS3A01G228000 chr4D 90.566 53 2 2 5210 5262 120078487 120078438 6.420000e-07 67.6
49 TraesCS3A01G228000 chr1A 82.871 613 76 15 3681 4287 374139108 374139697 3.170000e-144 523.0
50 TraesCS3A01G228000 chr1A 82.381 420 74 0 2077 2496 577469417 577469836 5.650000e-97 366.0
51 TraesCS3A01G228000 chr1A 78.247 308 47 15 3093 3396 577471079 577471370 7.910000e-41 180.0
52 TraesCS3A01G228000 chr5D 85.630 508 44 22 5265 5756 443310963 443311457 3.190000e-139 507.0
53 TraesCS3A01G228000 chr5D 84.272 515 64 9 5270 5773 341684969 341685477 4.160000e-133 486.0
54 TraesCS3A01G228000 chr5D 84.130 523 60 17 5265 5772 212570313 212570827 1.500000e-132 484.0
55 TraesCS3A01G228000 chr5D 83.142 522 62 17 5265 5771 78350817 78351327 4.220000e-123 453.0
56 TraesCS3A01G228000 chr5D 98.182 55 1 0 3622 3676 446495832 446495886 8.190000e-16 97.1
57 TraesCS3A01G228000 chr5D 93.443 61 4 0 5205 5265 78350454 78350514 3.810000e-14 91.6
58 TraesCS3A01G228000 chr5D 92.188 64 4 1 3614 3676 27052349 27052286 1.370000e-13 89.8
59 TraesCS3A01G228000 chr2D 84.160 524 58 14 5265 5772 95182058 95182572 1.500000e-132 484.0
60 TraesCS3A01G228000 chr2D 96.610 59 2 0 3621 3679 481447197 481447139 2.280000e-16 99.0
61 TraesCS3A01G228000 chr4A 82.909 550 72 16 3747 4287 446352279 446352815 9.000000e-130 475.0
62 TraesCS3A01G228000 chr4A 90.000 60 6 0 5205 5264 109863249 109863190 2.970000e-10 78.7
63 TraesCS3A01G228000 chr4A 92.857 42 0 1 5776 5814 690955324 690955365 3.860000e-04 58.4
64 TraesCS3A01G228000 chr5B 83.109 521 67 14 5265 5771 633254506 633255019 1.170000e-123 455.0
65 TraesCS3A01G228000 chr5B 94.118 34 2 0 5784 5817 502032276 502032309 1.800000e-02 52.8
66 TraesCS3A01G228000 chr6B 80.987 547 99 4 3681 4225 708507390 708506847 7.110000e-116 429.0
67 TraesCS3A01G228000 chr6B 94.949 99 5 0 9608 9706 422320935 422320837 1.330000e-33 156.0
68 TraesCS3A01G228000 chr6B 96.552 58 2 0 3619 3676 440759399 440759342 8.190000e-16 97.1
69 TraesCS3A01G228000 chr6B 100.000 29 0 0 5784 5812 190395341 190395369 5.000000e-03 54.7
70 TraesCS3A01G228000 chr6A 81.373 510 89 5 3681 4185 611283194 611283702 2.580000e-110 411.0
71 TraesCS3A01G228000 chr6A 93.878 98 6 0 9608 9705 383964423 383964326 2.230000e-31 148.0
72 TraesCS3A01G228000 chr6A 91.667 60 5 0 5205 5264 524298141 524298200 6.380000e-12 84.2
73 TraesCS3A01G228000 chr6A 95.238 42 1 1 5775 5815 574572237 574572278 2.310000e-06 65.8
74 TraesCS3A01G228000 chr6A 94.737 38 2 0 5775 5812 574637428 574637465 1.070000e-04 60.2
75 TraesCS3A01G228000 chr6A 97.059 34 0 1 5783 5815 574605940 574605973 1.000000e-03 56.5
76 TraesCS3A01G228000 chr1B 80.668 419 81 0 2077 2495 669158895 669159313 9.600000e-85 326.0
77 TraesCS3A01G228000 chr1B 79.870 308 42 16 3093 3396 669160210 669160501 3.630000e-49 207.0
78 TraesCS3A01G228000 chr1B 92.857 98 7 0 9608 9705 665276079 665275982 1.040000e-29 143.0
79 TraesCS3A01G228000 chr7A 93.069 101 7 0 9608 9708 115257965 115257865 2.230000e-31 148.0
80 TraesCS3A01G228000 chr7A 98.182 55 1 0 3622 3676 232755652 232755598 8.190000e-16 97.1
81 TraesCS3A01G228000 chr7A 89.831 59 2 1 5210 5264 531103204 531103262 1.380000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G228000 chr3A 426863591 426873497 9906 True 18295.000 18295 100.000000 1 9907 1 chr3A.!!$R1 9906
1 TraesCS3A01G228000 chr3D 307226196 307234086 7890 False 1960.500 3980 94.184667 39 9907 6 chr3D.!!$F7 9868
2 TraesCS3A01G228000 chr3D 41420323 41420909 586 True 562.000 562 84.027000 3681 4278 1 chr3D.!!$R1 597
3 TraesCS3A01G228000 chr3D 302226220 302226730 510 False 514.000 514 85.221000 5265 5772 1 chr3D.!!$F2 507
4 TraesCS3A01G228000 chr3D 427287518 427288066 548 False 508.000 508 83.755000 3682 4222 1 chr3D.!!$F4 540
5 TraesCS3A01G228000 chr3D 580981189 580981696 507 False 484.000 484 84.302000 5265 5766 1 chr3D.!!$F5 501
6 TraesCS3A01G228000 chr3B 414019217 414027107 7890 True 1384.025 3692 93.060625 140 9900 8 chr3B.!!$R1 9760
7 TraesCS3A01G228000 chr7D 306448937 306449851 914 True 1483.000 1483 95.961000 4290 5202 1 chr7D.!!$R1 912
8 TraesCS3A01G228000 chr2A 327117240 327118163 923 False 1459.000 1459 95.243000 4284 5204 1 chr2A.!!$F1 920
9 TraesCS3A01G228000 chr4B 303976684 303977608 924 True 1456.000 1456 95.140000 4284 5205 1 chr4B.!!$R2 921
10 TraesCS3A01G228000 chrUn 222701420 222702346 926 True 1454.000 1454 95.043000 4284 5207 1 chrUn.!!$R2 923
11 TraesCS3A01G228000 chrUn 158527019 158527946 927 True 1450.000 1450 94.941000 4284 5207 1 chrUn.!!$R1 923
12 TraesCS3A01G228000 chrUn 145774887 145775816 929 False 1448.000 1448 94.844000 4284 5209 1 chrUn.!!$F1 925
13 TraesCS3A01G228000 chr2B 351608588 351609511 923 False 1454.000 1454 95.135000 4284 5204 1 chr2B.!!$F1 920
14 TraesCS3A01G228000 chr2B 353339627 353340561 934 True 1443.000 1443 94.563000 4284 5217 1 chr2B.!!$R1 933
15 TraesCS3A01G228000 chr2B 563691669 563692264 595 True 590.000 590 84.667000 3694 4287 1 chr2B.!!$R2 593
16 TraesCS3A01G228000 chr5A 248635905 248636837 932 False 1445.000 1445 94.652000 4290 5221 1 chr5A.!!$F1 931
17 TraesCS3A01G228000 chr6D 394212952 394213570 618 True 601.000 601 84.615000 3680 4287 1 chr6D.!!$R3 607
18 TraesCS3A01G228000 chr6D 262435281 262435873 592 True 529.000 529 82.943000 3694 4285 1 chr6D.!!$R1 591
19 TraesCS3A01G228000 chr1D 299761785 299762387 602 False 569.000 569 83.824000 3681 4288 1 chr1D.!!$F1 607
20 TraesCS3A01G228000 chr4D 47558206 47558710 504 False 527.000 527 85.659000 5265 5773 1 chr4D.!!$F1 508
21 TraesCS3A01G228000 chr1A 374139108 374139697 589 False 523.000 523 82.871000 3681 4287 1 chr1A.!!$F1 606
22 TraesCS3A01G228000 chr1A 577469417 577471370 1953 False 273.000 366 80.314000 2077 3396 2 chr1A.!!$F2 1319
23 TraesCS3A01G228000 chr5D 341684969 341685477 508 False 486.000 486 84.272000 5270 5773 1 chr5D.!!$F2 503
24 TraesCS3A01G228000 chr5D 212570313 212570827 514 False 484.000 484 84.130000 5265 5772 1 chr5D.!!$F1 507
25 TraesCS3A01G228000 chr5D 78350454 78351327 873 False 272.300 453 88.292500 5205 5771 2 chr5D.!!$F5 566
26 TraesCS3A01G228000 chr2D 95182058 95182572 514 False 484.000 484 84.160000 5265 5772 1 chr2D.!!$F1 507
27 TraesCS3A01G228000 chr4A 446352279 446352815 536 False 475.000 475 82.909000 3747 4287 1 chr4A.!!$F1 540
28 TraesCS3A01G228000 chr5B 633254506 633255019 513 False 455.000 455 83.109000 5265 5771 1 chr5B.!!$F2 506
29 TraesCS3A01G228000 chr6B 708506847 708507390 543 True 429.000 429 80.987000 3681 4225 1 chr6B.!!$R3 544
30 TraesCS3A01G228000 chr6A 611283194 611283702 508 False 411.000 411 81.373000 3681 4185 1 chr6A.!!$F5 504
31 TraesCS3A01G228000 chr1B 669158895 669160501 1606 False 266.500 326 80.269000 2077 3396 2 chr1B.!!$F1 1319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 83 0.389391 GCTAAGTATGGCGAGCTCCA 59.611 55.0 8.47 1.61 40.97 3.86 F
1206 1255 0.472471 TTCCCTTTCTGTTCGGCACT 59.528 50.0 0.00 0.00 0.00 4.40 F
2036 2095 0.319900 TTCTGACGAGCTTCCAGTGC 60.320 55.0 9.69 0.00 0.00 4.40 F
3640 4504 0.815615 CTTAGGGCATCTCCAACGGC 60.816 60.0 0.00 0.00 36.21 5.68 F
3667 4531 0.034477 AAATTTCCTCCCGCATCCGT 60.034 50.0 0.00 0.00 0.00 4.69 F
4059 4965 0.322187 TCGGATAGATCATCGGCGGA 60.322 55.0 7.21 0.00 34.73 5.54 F
5781 7023 0.035439 ACCAATACAGGTTGCGGGAG 60.035 55.0 0.00 0.00 39.34 4.30 F
7723 9012 0.106469 ATCTCGCTGAGACTAGGGCA 60.106 55.0 9.85 0.00 41.76 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 1935 1.134729 GGGTCGCAAAAATGATGGCAT 60.135 47.619 0.00 0.00 35.92 4.40 R
2828 3639 1.420138 ACCCCCTAATGCCTACGATTG 59.580 52.381 0.00 0.00 0.00 2.67 R
3648 4512 0.034477 ACGGATGCGGGAGGAAATTT 60.034 50.000 12.44 0.00 0.00 1.82 R
5203 6118 0.179018 GTGCAGGAGGAACAGTGGTT 60.179 55.000 0.00 0.00 40.76 3.67 R
5206 6121 0.604780 CAGGTGCAGGAGGAACAGTG 60.605 60.000 0.00 0.00 0.00 3.66 R
5793 7035 0.179018 ATAAGGGCATCTCCAACGGC 60.179 55.000 0.00 0.00 36.21 5.68 R
7763 9052 0.240945 GATGGCAGTGTTTGGTTCGG 59.759 55.000 0.00 0.00 0.00 4.30 R
9656 11274 0.734942 TGACGATTCCGAGAAACGCC 60.735 55.000 13.36 6.12 41.07 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.851263 TCGCATGTTACTTTCCCAGT 57.149 45.000 0.00 0.00 39.87 4.00
20 21 2.422597 TCGCATGTTACTTTCCCAGTG 58.577 47.619 0.00 0.00 35.97 3.66
21 22 2.037902 TCGCATGTTACTTTCCCAGTGA 59.962 45.455 0.00 0.00 35.97 3.41
22 23 2.416547 CGCATGTTACTTTCCCAGTGAG 59.583 50.000 0.00 0.00 35.97 3.51
23 24 3.674997 GCATGTTACTTTCCCAGTGAGA 58.325 45.455 0.00 0.00 35.97 3.27
24 25 3.437049 GCATGTTACTTTCCCAGTGAGAC 59.563 47.826 0.00 0.00 35.97 3.36
25 26 3.764237 TGTTACTTTCCCAGTGAGACC 57.236 47.619 0.00 0.00 35.97 3.85
26 27 3.042682 TGTTACTTTCCCAGTGAGACCA 58.957 45.455 0.00 0.00 35.97 4.02
27 28 3.181458 TGTTACTTTCCCAGTGAGACCAC 60.181 47.826 0.00 0.00 43.50 4.16
28 29 1.507140 ACTTTCCCAGTGAGACCACA 58.493 50.000 0.00 0.00 45.54 4.17
29 30 1.843851 ACTTTCCCAGTGAGACCACAA 59.156 47.619 0.00 0.00 45.54 3.33
30 31 2.222027 CTTTCCCAGTGAGACCACAAC 58.778 52.381 0.00 0.00 45.54 3.32
31 32 0.472471 TTCCCAGTGAGACCACAACC 59.528 55.000 0.00 0.00 45.54 3.77
32 33 0.399949 TCCCAGTGAGACCACAACCT 60.400 55.000 0.00 0.00 45.54 3.50
33 34 1.132977 TCCCAGTGAGACCACAACCTA 60.133 52.381 0.00 0.00 45.54 3.08
34 35 1.909302 CCCAGTGAGACCACAACCTAT 59.091 52.381 0.00 0.00 45.54 2.57
35 36 2.355108 CCCAGTGAGACCACAACCTATG 60.355 54.545 0.00 0.00 45.54 2.23
36 37 2.567169 CCAGTGAGACCACAACCTATGA 59.433 50.000 0.00 0.00 45.54 2.15
37 38 3.007940 CCAGTGAGACCACAACCTATGAA 59.992 47.826 0.00 0.00 45.54 2.57
63 64 5.068723 TGGAGGAGAGTAATTAACCGCTAAG 59.931 44.000 0.00 0.00 0.00 2.18
64 65 5.068855 GGAGGAGAGTAATTAACCGCTAAGT 59.931 44.000 0.00 0.00 0.00 2.24
67 68 7.659186 AGGAGAGTAATTAACCGCTAAGTATG 58.341 38.462 0.00 0.00 0.00 2.39
68 69 6.867293 GGAGAGTAATTAACCGCTAAGTATGG 59.133 42.308 0.00 0.00 0.00 2.74
77 83 0.389391 GCTAAGTATGGCGAGCTCCA 59.611 55.000 8.47 1.61 40.97 3.86
102 108 6.703319 TGGTTATCCACGAGAGAAATGTTTA 58.297 36.000 0.00 0.00 39.03 2.01
104 110 7.827236 TGGTTATCCACGAGAGAAATGTTTAAT 59.173 33.333 0.00 0.00 39.03 1.40
107 113 4.394920 TCCACGAGAGAAATGTTTAATGCC 59.605 41.667 0.00 0.00 0.00 4.40
108 114 4.438744 CCACGAGAGAAATGTTTAATGCCC 60.439 45.833 0.00 0.00 0.00 5.36
119 126 9.705290 GAAATGTTTAATGCCCTTTTCTTCTAA 57.295 29.630 0.00 0.00 0.00 2.10
124 131 9.803315 GTTTAATGCCCTTTTCTTCTAAATAGG 57.197 33.333 0.00 0.00 0.00 2.57
128 135 5.133941 GCCCTTTTCTTCTAAATAGGAGGG 58.866 45.833 0.00 0.00 34.99 4.30
129 136 5.104067 GCCCTTTTCTTCTAAATAGGAGGGA 60.104 44.000 8.71 0.00 33.81 4.20
131 138 7.587258 CCCTTTTCTTCTAAATAGGAGGGATT 58.413 38.462 0.00 0.00 33.81 3.01
132 139 8.724310 CCCTTTTCTTCTAAATAGGAGGGATTA 58.276 37.037 0.00 0.00 33.81 1.75
169 176 6.106877 ACGCAATAAATACCATGATATCGC 57.893 37.500 0.00 0.00 0.00 4.58
170 177 5.641636 ACGCAATAAATACCATGATATCGCA 59.358 36.000 0.00 0.00 0.00 5.10
182 189 5.469760 CCATGATATCGCATCCTAAAACACA 59.530 40.000 0.00 0.00 0.00 3.72
196 203 6.879993 TCCTAAAACACAGCAAACGGATAATA 59.120 34.615 0.00 0.00 0.00 0.98
221 228 2.625314 CTGGCTCATCGGAGTGAGAATA 59.375 50.000 16.50 5.67 46.77 1.75
272 284 2.831526 ACCATAACAAATGGCCAAGGAC 59.168 45.455 10.96 0.00 42.82 3.85
273 285 2.168313 CCATAACAAATGGCCAAGGACC 59.832 50.000 10.96 0.00 31.75 4.46
285 297 1.065418 CCAAGGACCCGAGCATAAACT 60.065 52.381 0.00 0.00 0.00 2.66
347 359 2.158325 TGGAAAGCCACCTCCATTTTCT 60.158 45.455 0.00 0.00 39.92 2.52
411 427 1.947013 CAGGGCGCATCAGCATTAG 59.053 57.895 10.83 0.00 42.27 1.73
468 494 2.226437 GCAAACCTGAAGCGAGAAATGA 59.774 45.455 0.00 0.00 0.00 2.57
469 495 3.304659 GCAAACCTGAAGCGAGAAATGAA 60.305 43.478 0.00 0.00 0.00 2.57
470 496 4.792704 GCAAACCTGAAGCGAGAAATGAAA 60.793 41.667 0.00 0.00 0.00 2.69
473 499 3.441572 ACCTGAAGCGAGAAATGAAATGG 59.558 43.478 0.00 0.00 0.00 3.16
474 500 3.181493 CCTGAAGCGAGAAATGAAATGGG 60.181 47.826 0.00 0.00 0.00 4.00
571 598 3.065925 CGGAAATCAAAGCAGGATTCCTC 59.934 47.826 0.98 0.00 34.02 3.71
618 645 2.670934 CCAGACACACTGCCTGCC 60.671 66.667 0.00 0.00 44.52 4.85
619 646 2.429058 CAGACACACTGCCTGCCT 59.571 61.111 0.00 0.00 39.86 4.75
620 647 1.670406 CAGACACACTGCCTGCCTC 60.670 63.158 0.00 0.00 39.86 4.70
621 648 2.359230 GACACACTGCCTGCCTCC 60.359 66.667 0.00 0.00 0.00 4.30
622 649 2.851102 ACACACTGCCTGCCTCCT 60.851 61.111 0.00 0.00 0.00 3.69
666 698 5.073144 TCCTCCTCCTCTCTCTCTCTTATTC 59.927 48.000 0.00 0.00 0.00 1.75
704 737 0.616111 GCAGACCAGGAGAGGAGGAA 60.616 60.000 0.00 0.00 0.00 3.36
705 738 1.190643 CAGACCAGGAGAGGAGGAAC 58.809 60.000 0.00 0.00 0.00 3.62
806 847 4.493747 CCCTTCGTCGCCTCGTCC 62.494 72.222 0.00 0.00 0.00 4.79
903 949 2.355837 CCGTGTGTCTGACCGTGG 60.356 66.667 5.17 0.00 0.00 4.94
904 950 2.415843 CGTGTGTCTGACCGTGGT 59.584 61.111 5.17 0.00 0.00 4.16
905 951 1.949133 CGTGTGTCTGACCGTGGTG 60.949 63.158 5.17 0.00 0.00 4.17
935 981 0.534873 GGGCTTGGTGTTGTTGTTGT 59.465 50.000 0.00 0.00 0.00 3.32
962 1008 3.697747 CCGTACGGCACAGGGGAA 61.698 66.667 23.44 0.00 0.00 3.97
1206 1255 0.472471 TTCCCTTTCTGTTCGGCACT 59.528 50.000 0.00 0.00 0.00 4.40
1384 1437 3.933332 CACGATCTTTTCCCTCTGTAACC 59.067 47.826 0.00 0.00 0.00 2.85
1487 1540 1.725641 TGAGTTATGCGGCAGTCTTG 58.274 50.000 9.25 0.00 0.00 3.02
1539 1592 3.449737 TGGCGCTCCTTTACTATAACAGT 59.550 43.478 7.64 0.00 41.62 3.55
1665 1724 2.587522 GCTTTTCTTGTGGGGTTCTCT 58.412 47.619 0.00 0.00 0.00 3.10
1666 1725 2.959030 GCTTTTCTTGTGGGGTTCTCTT 59.041 45.455 0.00 0.00 0.00 2.85
1667 1726 3.004839 GCTTTTCTTGTGGGGTTCTCTTC 59.995 47.826 0.00 0.00 0.00 2.87
1668 1727 4.464947 CTTTTCTTGTGGGGTTCTCTTCT 58.535 43.478 0.00 0.00 0.00 2.85
1669 1728 3.771577 TTCTTGTGGGGTTCTCTTCTC 57.228 47.619 0.00 0.00 0.00 2.87
1670 1729 1.978580 TCTTGTGGGGTTCTCTTCTCC 59.021 52.381 0.00 0.00 0.00 3.71
1876 1935 8.358148 GTCGTCCATTAAAAGTATCTGGAGATA 58.642 37.037 0.00 0.00 36.71 1.98
1920 1979 0.392998 CCTACCGTGCCATTTCTGCT 60.393 55.000 0.00 0.00 0.00 4.24
2036 2095 0.319900 TTCTGACGAGCTTCCAGTGC 60.320 55.000 9.69 0.00 0.00 4.40
2348 2407 6.531948 GCATATTATGTTACCTCCATCGAGAC 59.468 42.308 5.60 0.00 38.52 3.36
2446 2505 4.469657 ACTTGACAAAGGAGCATTACCAA 58.530 39.130 0.00 0.00 37.76 3.67
2479 2538 2.555199 CAATTACTCCGGGCTCTGAAG 58.445 52.381 0.00 0.00 0.00 3.02
2521 2674 8.004585 GGTAACATACCGATTTATCTTTCTCG 57.995 38.462 0.00 0.00 39.39 4.04
2522 2675 7.864379 GGTAACATACCGATTTATCTTTCTCGA 59.136 37.037 0.00 0.00 39.39 4.04
2523 2676 9.241317 GTAACATACCGATTTATCTTTCTCGAA 57.759 33.333 0.00 0.00 33.07 3.71
2537 2692 4.837896 TTCTCGAAGATCATATGTCGCT 57.162 40.909 1.90 0.00 33.89 4.93
2551 2706 2.172679 TGTCGCTGGACCATACAGTAA 58.827 47.619 0.00 0.00 42.73 2.24
2561 2716 5.647658 TGGACCATACAGTAAATTTGCTCTG 59.352 40.000 5.74 11.00 0.00 3.35
2562 2717 5.648092 GGACCATACAGTAAATTTGCTCTGT 59.352 40.000 20.55 20.55 42.56 3.41
2563 2718 6.403636 GGACCATACAGTAAATTTGCTCTGTG 60.404 42.308 23.16 14.50 40.61 3.66
2568 2723 4.516698 ACAGTAAATTTGCTCTGTGGTGAG 59.483 41.667 17.97 4.58 39.27 3.51
2638 3325 1.996898 CGAACGCTTATAGTTGGTGCA 59.003 47.619 0.00 0.00 31.14 4.57
2715 3526 7.220030 AGATTAGCTGAAGTTCTTGAGTTCAA 58.780 34.615 4.17 0.00 44.81 2.69
2747 3558 5.950544 AATCTGTACCAACTAGTGCCATA 57.049 39.130 0.00 0.00 0.00 2.74
2760 3571 0.916086 TGCCATACTGGTTGGGTAGG 59.084 55.000 0.00 0.00 40.46 3.18
2766 3577 2.361085 ACTGGTTGGGTAGGGAAGAT 57.639 50.000 0.00 0.00 0.00 2.40
2783 3594 7.922382 AGGGAAGATAGGTGATAAACATATGG 58.078 38.462 7.80 0.00 35.93 2.74
2791 3602 5.376854 GTGATAAACATATGGCCATCACC 57.623 43.478 24.80 4.78 37.41 4.02
2799 3610 2.077687 ATGGCCATCACCTGAATTCC 57.922 50.000 14.09 0.00 0.00 3.01
2811 3622 5.591472 TCACCTGAATTCCAAATATGCTCAG 59.409 40.000 2.27 0.00 0.00 3.35
2828 3639 6.187125 TGCTCAGAAACAGCAAATTATCTC 57.813 37.500 0.00 0.00 44.02 2.75
2845 3659 4.543590 ATCTCAATCGTAGGCATTAGGG 57.456 45.455 0.00 0.00 0.00 3.53
2854 3668 1.080638 AGGCATTAGGGGGTGAACAA 58.919 50.000 0.00 0.00 0.00 2.83
2903 3717 4.082463 GCGGGTTGTTTCCTCATGATTTAA 60.082 41.667 0.00 0.00 0.00 1.52
2962 3778 4.584638 TGCTGGTTCAAATGGTATACCT 57.415 40.909 22.41 5.81 36.82 3.08
2998 3814 6.014584 AGTCTTTTCAACAACCAAAAAGGAGT 60.015 34.615 6.89 0.00 39.39 3.85
3056 3872 2.363788 TAACATGTCCAGTCGTGCTC 57.636 50.000 0.00 0.00 0.00 4.26
3216 4079 2.365582 GTTGCATTCAACGATACCCCT 58.634 47.619 0.00 0.00 42.55 4.79
3277 4141 7.337942 CCTATATTCTGCCATCCTTACATTTCC 59.662 40.741 0.00 0.00 0.00 3.13
3408 4272 1.278127 TCAAAGGTAAGCTTCCCTCCG 59.722 52.381 11.52 5.75 0.00 4.63
3446 4310 6.536941 TCTTGGTTGAATTTTGGTTAAAGCAC 59.463 34.615 0.00 0.00 31.48 4.40
3448 4312 6.045955 TGGTTGAATTTTGGTTAAAGCACTC 58.954 36.000 0.00 0.00 27.77 3.51
3449 4313 6.127196 TGGTTGAATTTTGGTTAAAGCACTCT 60.127 34.615 0.00 0.00 27.77 3.24
3463 4327 1.146637 CACTCTGCTGACAGCTTGAC 58.853 55.000 26.94 0.00 44.10 3.18
3470 4334 2.288763 TGCTGACAGCTTGACATAACGA 60.289 45.455 26.94 0.19 42.97 3.85
3471 4335 2.736721 GCTGACAGCTTGACATAACGAA 59.263 45.455 20.41 0.00 38.45 3.85
3492 4356 1.001974 AGACTAATGGTGCTGCGTTGA 59.998 47.619 0.00 0.00 0.00 3.18
3515 4379 5.182487 ACATACCATGCATCTTTCGTTACA 58.818 37.500 0.00 0.00 0.00 2.41
3523 4387 7.914871 CCATGCATCTTTCGTTACAATTAATCA 59.085 33.333 0.00 0.00 0.00 2.57
3611 4475 3.841643 CTGTGGCATGAAACCTCATTTC 58.158 45.455 0.00 0.00 46.07 2.17
3612 4476 2.562298 TGTGGCATGAAACCTCATTTCC 59.438 45.455 0.00 0.00 45.40 3.13
3613 4477 2.562298 GTGGCATGAAACCTCATTTCCA 59.438 45.455 0.00 3.12 45.40 3.53
3614 4478 3.196254 GTGGCATGAAACCTCATTTCCAT 59.804 43.478 0.00 0.00 45.40 3.41
3615 4479 4.402155 GTGGCATGAAACCTCATTTCCATA 59.598 41.667 0.00 0.00 45.40 2.74
3616 4480 4.402155 TGGCATGAAACCTCATTTCCATAC 59.598 41.667 0.00 0.00 45.40 2.39
3617 4481 4.402155 GGCATGAAACCTCATTTCCATACA 59.598 41.667 0.00 0.00 45.40 2.29
3618 4482 5.450965 GGCATGAAACCTCATTTCCATACAG 60.451 44.000 0.00 0.00 45.40 2.74
3619 4483 5.357878 GCATGAAACCTCATTTCCATACAGA 59.642 40.000 0.00 0.00 45.40 3.41
3620 4484 6.040166 GCATGAAACCTCATTTCCATACAGAT 59.960 38.462 0.00 0.00 45.40 2.90
3621 4485 7.646314 CATGAAACCTCATTTCCATACAGATC 58.354 38.462 0.00 0.00 45.40 2.75
3622 4486 6.962182 TGAAACCTCATTTCCATACAGATCT 58.038 36.000 0.00 0.00 45.40 2.75
3623 4487 7.405292 TGAAACCTCATTTCCATACAGATCTT 58.595 34.615 0.00 0.00 45.40 2.40
3624 4488 8.548025 TGAAACCTCATTTCCATACAGATCTTA 58.452 33.333 0.00 0.00 45.40 2.10
3625 4489 8.970859 AAACCTCATTTCCATACAGATCTTAG 57.029 34.615 0.00 0.00 0.00 2.18
3626 4490 7.072263 ACCTCATTTCCATACAGATCTTAGG 57.928 40.000 0.00 0.00 0.00 2.69
3627 4491 6.043706 ACCTCATTTCCATACAGATCTTAGGG 59.956 42.308 0.00 1.00 0.00 3.53
3628 4492 5.869579 TCATTTCCATACAGATCTTAGGGC 58.130 41.667 0.00 0.00 0.00 5.19
3629 4493 5.369404 TCATTTCCATACAGATCTTAGGGCA 59.631 40.000 0.00 0.00 0.00 5.36
3630 4494 5.912149 TTTCCATACAGATCTTAGGGCAT 57.088 39.130 0.00 0.00 0.00 4.40
3631 4495 5.489792 TTCCATACAGATCTTAGGGCATC 57.510 43.478 0.00 0.00 0.00 3.91
3632 4496 4.756564 TCCATACAGATCTTAGGGCATCT 58.243 43.478 0.00 0.00 0.00 2.90
3633 4497 4.774726 TCCATACAGATCTTAGGGCATCTC 59.225 45.833 0.00 0.00 0.00 2.75
3634 4498 4.081198 CCATACAGATCTTAGGGCATCTCC 60.081 50.000 0.00 0.00 0.00 3.71
3635 4499 3.051940 ACAGATCTTAGGGCATCTCCA 57.948 47.619 0.00 0.00 36.21 3.86
3636 4500 3.387962 ACAGATCTTAGGGCATCTCCAA 58.612 45.455 0.00 0.00 36.21 3.53
3637 4501 3.135530 ACAGATCTTAGGGCATCTCCAAC 59.864 47.826 0.00 0.00 36.21 3.77
3638 4502 2.366916 AGATCTTAGGGCATCTCCAACG 59.633 50.000 0.00 0.00 36.21 4.10
3639 4503 0.830648 TCTTAGGGCATCTCCAACGG 59.169 55.000 0.00 0.00 36.21 4.44
3640 4504 0.815615 CTTAGGGCATCTCCAACGGC 60.816 60.000 0.00 0.00 36.21 5.68
3641 4505 1.558167 TTAGGGCATCTCCAACGGCA 61.558 55.000 0.00 0.00 36.21 5.69
3642 4506 1.558167 TAGGGCATCTCCAACGGCAA 61.558 55.000 0.00 0.00 36.21 4.52
3643 4507 2.700773 GGGCATCTCCAACGGCAAC 61.701 63.158 0.00 0.00 36.21 4.17
3644 4508 2.700773 GGCATCTCCAACGGCAACC 61.701 63.158 0.00 0.00 34.01 3.77
3645 4509 2.700773 GCATCTCCAACGGCAACCC 61.701 63.158 0.00 0.00 0.00 4.11
3655 4519 4.277239 GGCAACCCGCAAATTTCC 57.723 55.556 0.00 0.00 45.17 3.13
3656 4520 1.671166 GGCAACCCGCAAATTTCCT 59.329 52.632 0.00 0.00 45.17 3.36
3657 4521 0.389817 GGCAACCCGCAAATTTCCTC 60.390 55.000 0.00 0.00 45.17 3.71
3658 4522 0.389817 GCAACCCGCAAATTTCCTCC 60.390 55.000 0.00 0.00 41.79 4.30
3659 4523 0.246360 CAACCCGCAAATTTCCTCCC 59.754 55.000 0.00 0.00 0.00 4.30
3660 4524 1.248101 AACCCGCAAATTTCCTCCCG 61.248 55.000 0.00 0.00 0.00 5.14
3661 4525 2.489751 CCGCAAATTTCCTCCCGC 59.510 61.111 0.00 0.00 0.00 6.13
3662 4526 2.339556 CCGCAAATTTCCTCCCGCA 61.340 57.895 0.00 0.00 0.00 5.69
3663 4527 1.666209 CCGCAAATTTCCTCCCGCAT 61.666 55.000 0.00 0.00 0.00 4.73
3664 4528 0.248621 CGCAAATTTCCTCCCGCATC 60.249 55.000 0.00 0.00 0.00 3.91
3665 4529 0.103026 GCAAATTTCCTCCCGCATCC 59.897 55.000 0.00 0.00 0.00 3.51
3666 4530 0.381801 CAAATTTCCTCCCGCATCCG 59.618 55.000 0.00 0.00 0.00 4.18
3667 4531 0.034477 AAATTTCCTCCCGCATCCGT 60.034 50.000 0.00 0.00 0.00 4.69
3668 4532 0.463833 AATTTCCTCCCGCATCCGTC 60.464 55.000 0.00 0.00 0.00 4.79
3669 4533 2.325393 ATTTCCTCCCGCATCCGTCC 62.325 60.000 0.00 0.00 0.00 4.79
3719 4583 4.141855 ACAAACACGACGGATTTTCATC 57.858 40.909 0.00 0.00 0.00 2.92
3727 4591 4.695455 ACGACGGATTTTCATCACATTTCT 59.305 37.500 0.00 0.00 0.00 2.52
3852 4730 1.670087 CCGGCGATAAGAGCGATGAAT 60.670 52.381 9.30 0.00 35.00 2.57
3854 4732 2.476619 CGGCGATAAGAGCGATGAATTT 59.523 45.455 0.00 0.00 35.00 1.82
3857 4736 4.686554 GGCGATAAGAGCGATGAATTTAGT 59.313 41.667 0.00 0.00 35.00 2.24
3867 4746 3.865745 CGATGAATTTAGTTGCGGTCTCT 59.134 43.478 0.00 0.00 0.00 3.10
3993 4876 2.989824 CCGGTGGACGTGAGGTCT 60.990 66.667 5.21 0.00 45.35 3.85
4009 4893 3.104512 AGGTCTACGATGGAAATGGTGA 58.895 45.455 0.00 0.00 0.00 4.02
4010 4894 3.711704 AGGTCTACGATGGAAATGGTGAT 59.288 43.478 0.00 0.00 0.00 3.06
4059 4965 0.322187 TCGGATAGATCATCGGCGGA 60.322 55.000 7.21 0.00 34.73 5.54
4272 5182 2.032528 CCGGTGCTGCTCCAGAAA 59.967 61.111 19.58 0.00 32.44 2.52
4310 5220 1.559682 GATAGAGGCAAAGGTGTCCCA 59.440 52.381 0.00 0.00 0.00 4.37
4316 5226 1.970640 GGCAAAGGTGTCCCATCTTTT 59.029 47.619 0.00 0.00 41.34 2.27
4339 5249 7.482654 TTGATGAGATGGTGAATATCGTTTC 57.517 36.000 0.00 0.00 28.37 2.78
4448 5359 1.086067 ACGCTGGAGCATGATCAACG 61.086 55.000 13.85 14.59 42.21 4.10
4624 5535 1.672881 GAAGTTGCAGCTATGGCGAAT 59.327 47.619 2.53 0.00 44.37 3.34
4711 5623 1.614850 GGGAATTTCGTGGCCCTTGTA 60.615 52.381 0.00 0.00 37.59 2.41
4784 5697 9.250624 GACTCTAAAACAGCCTATACTTATGTG 57.749 37.037 0.00 0.00 0.00 3.21
5120 6035 5.491070 ACGGAAGTACCTGGTAATTTAACC 58.509 41.667 19.31 14.84 46.88 2.85
5324 6543 1.299976 GATTCCGGTGAGGCAAGGT 59.700 57.895 0.00 0.00 40.77 3.50
5413 6639 3.055719 CAGCGGCATTGAACGGGT 61.056 61.111 1.45 0.00 0.00 5.28
5447 6688 2.509336 CCGTCCAGTCACGCATCC 60.509 66.667 0.00 0.00 38.52 3.51
5463 6704 1.863155 ATCCCCGGCATTGAACAGGT 61.863 55.000 0.00 0.00 0.00 4.00
5471 6712 1.167851 CATTGAACAGGTGCGGACAT 58.832 50.000 9.96 0.00 0.00 3.06
5521 6762 3.430862 GCACGGCCGCTTCAATGA 61.431 61.111 28.58 0.00 0.00 2.57
5568 6809 2.354704 CCCTGAGCCGTCTTCAATGTTA 60.355 50.000 0.00 0.00 0.00 2.41
5574 6815 2.343101 CCGTCTTCAATGTTAAGCGGA 58.657 47.619 10.92 0.00 41.74 5.54
5671 6913 2.347490 GCCAAGGCGGTCAGAAGA 59.653 61.111 0.00 0.00 36.97 2.87
5688 6930 4.779733 AGGGCGTGGGATCGGTCT 62.780 66.667 0.00 0.00 0.00 3.85
5703 6945 1.371558 GTCTGGACTCCCGCAAAGT 59.628 57.895 0.00 0.00 34.29 2.66
5729 6971 0.463116 ACGTTTGTCTCCGGTTTGCT 60.463 50.000 0.00 0.00 0.00 3.91
5736 6978 4.208426 TCCGGTTTGCTGGAGAGA 57.792 55.556 0.00 0.00 44.85 3.10
5773 7015 1.956629 CTCCGCGGACCAATACAGGT 61.957 60.000 27.28 0.00 46.82 4.00
5774 7016 1.078708 CCGCGGACCAATACAGGTT 60.079 57.895 24.07 0.00 43.38 3.50
5775 7017 1.366111 CCGCGGACCAATACAGGTTG 61.366 60.000 24.07 0.00 43.38 3.77
5776 7018 1.800681 GCGGACCAATACAGGTTGC 59.199 57.895 0.00 0.00 43.38 4.17
5777 7019 1.977594 GCGGACCAATACAGGTTGCG 61.978 60.000 0.00 0.00 43.38 4.85
5778 7020 1.366111 CGGACCAATACAGGTTGCGG 61.366 60.000 0.00 0.00 43.38 5.69
5779 7021 1.029947 GGACCAATACAGGTTGCGGG 61.030 60.000 0.00 0.00 43.38 6.13
5780 7022 0.035820 GACCAATACAGGTTGCGGGA 60.036 55.000 0.00 0.00 43.38 5.14
5781 7023 0.035439 ACCAATACAGGTTGCGGGAG 60.035 55.000 0.00 0.00 39.34 4.30
5782 7024 0.748005 CCAATACAGGTTGCGGGAGG 60.748 60.000 0.00 0.00 0.00 4.30
5783 7025 0.035439 CAATACAGGTTGCGGGAGGT 60.035 55.000 0.00 0.00 0.00 3.85
5784 7026 0.696501 AATACAGGTTGCGGGAGGTT 59.303 50.000 0.00 0.00 0.00 3.50
5785 7027 0.696501 ATACAGGTTGCGGGAGGTTT 59.303 50.000 0.00 0.00 0.00 3.27
5786 7028 0.250553 TACAGGTTGCGGGAGGTTTG 60.251 55.000 0.00 0.00 0.00 2.93
5787 7029 1.228124 CAGGTTGCGGGAGGTTTGA 60.228 57.895 0.00 0.00 0.00 2.69
5788 7030 1.073199 AGGTTGCGGGAGGTTTGAG 59.927 57.895 0.00 0.00 0.00 3.02
5789 7031 1.971695 GGTTGCGGGAGGTTTGAGG 60.972 63.158 0.00 0.00 0.00 3.86
5790 7032 1.971695 GTTGCGGGAGGTTTGAGGG 60.972 63.158 0.00 0.00 0.00 4.30
5791 7033 2.457323 TTGCGGGAGGTTTGAGGGT 61.457 57.895 0.00 0.00 0.00 4.34
5792 7034 2.002018 TTGCGGGAGGTTTGAGGGTT 62.002 55.000 0.00 0.00 0.00 4.11
5793 7035 1.971695 GCGGGAGGTTTGAGGGTTG 60.972 63.158 0.00 0.00 0.00 3.77
5794 7036 1.971695 CGGGAGGTTTGAGGGTTGC 60.972 63.158 0.00 0.00 0.00 4.17
5795 7037 1.606601 GGGAGGTTTGAGGGTTGCC 60.607 63.158 0.00 0.00 0.00 4.52
5796 7038 1.971695 GGAGGTTTGAGGGTTGCCG 60.972 63.158 0.00 0.00 0.00 5.69
5797 7039 1.228154 GAGGTTTGAGGGTTGCCGT 60.228 57.895 0.00 0.00 0.00 5.68
5798 7040 0.822121 GAGGTTTGAGGGTTGCCGTT 60.822 55.000 0.00 0.00 0.00 4.44
5799 7041 1.106944 AGGTTTGAGGGTTGCCGTTG 61.107 55.000 0.00 0.00 0.00 4.10
5800 7042 1.362355 GTTTGAGGGTTGCCGTTGG 59.638 57.895 0.00 0.00 0.00 3.77
5801 7043 1.104577 GTTTGAGGGTTGCCGTTGGA 61.105 55.000 0.00 0.00 0.00 3.53
5802 7044 0.821711 TTTGAGGGTTGCCGTTGGAG 60.822 55.000 0.00 0.00 0.00 3.86
5803 7045 1.701031 TTGAGGGTTGCCGTTGGAGA 61.701 55.000 0.00 0.00 0.00 3.71
5804 7046 1.299976 GAGGGTTGCCGTTGGAGAT 59.700 57.895 0.00 0.00 0.00 2.75
5805 7047 1.002134 AGGGTTGCCGTTGGAGATG 60.002 57.895 0.00 0.00 0.00 2.90
5806 7048 2.700773 GGGTTGCCGTTGGAGATGC 61.701 63.158 0.00 0.00 0.00 3.91
5807 7049 2.700773 GGTTGCCGTTGGAGATGCC 61.701 63.158 0.00 0.00 37.10 4.40
5808 7050 2.361104 TTGCCGTTGGAGATGCCC 60.361 61.111 0.00 0.00 34.97 5.36
5809 7051 2.905996 TTGCCGTTGGAGATGCCCT 61.906 57.895 0.00 0.00 34.97 5.19
5810 7052 2.044946 GCCGTTGGAGATGCCCTT 60.045 61.111 0.00 0.00 34.97 3.95
5811 7053 1.223487 GCCGTTGGAGATGCCCTTA 59.777 57.895 0.00 0.00 34.97 2.69
5812 7054 0.179018 GCCGTTGGAGATGCCCTTAT 60.179 55.000 0.00 0.00 34.97 1.73
5813 7055 1.071699 GCCGTTGGAGATGCCCTTATA 59.928 52.381 0.00 0.00 34.97 0.98
5814 7056 2.872038 GCCGTTGGAGATGCCCTTATAG 60.872 54.545 0.00 0.00 34.97 1.31
5815 7057 2.289694 CCGTTGGAGATGCCCTTATAGG 60.290 54.545 0.00 0.00 34.97 2.57
5834 7076 4.021102 AGGGATATTTTATGGGAGCACG 57.979 45.455 0.00 0.00 0.00 5.34
5835 7077 3.650942 AGGGATATTTTATGGGAGCACGA 59.349 43.478 0.00 0.00 0.00 4.35
5848 7090 2.094182 GGAGCACGACACCTTCTATTGA 60.094 50.000 0.00 0.00 0.00 2.57
5865 7107 6.000219 TCTATTGAAACAAGCTCTGCTTCTT 59.000 36.000 1.45 0.00 46.77 2.52
5914 7156 2.358322 TCACTTTGACTTTCCCCACC 57.642 50.000 0.00 0.00 0.00 4.61
5927 7169 5.073144 ACTTTCCCCACCGTCATAATCATAT 59.927 40.000 0.00 0.00 0.00 1.78
5965 7207 8.354426 CCTTATCACATTGTTGATCATGCATTA 58.646 33.333 0.00 0.00 37.42 1.90
5985 7227 7.329438 CATTAAGTGCTCAAACATGAAGTTG 57.671 36.000 0.00 0.78 41.19 3.16
5994 7236 5.916318 TCAAACATGAAGTTGCTCCATTTT 58.084 33.333 0.00 0.00 41.19 1.82
6004 7246 9.995003 TGAAGTTGCTCCATTTTTATGTAAATT 57.005 25.926 0.00 0.00 0.00 1.82
6070 7312 9.937175 GGAGCTGTTAAAAATCATATGAGTTAC 57.063 33.333 17.99 13.15 31.57 2.50
6102 7344 4.039609 TGAGACTTGTGAAAGCATCTCAGA 59.960 41.667 0.00 0.00 38.08 3.27
6147 7389 6.004408 TCAATGAACATTATCATGATGCGG 57.996 37.500 18.72 9.27 39.90 5.69
6160 7402 5.423886 TCATGATGCGGTACTGATAAACAA 58.576 37.500 5.68 0.00 0.00 2.83
6161 7403 5.877564 TCATGATGCGGTACTGATAAACAAA 59.122 36.000 5.68 0.00 0.00 2.83
6253 7495 0.178767 TTGATGTCTGGAGCATCGGG 59.821 55.000 0.00 0.00 44.02 5.14
6378 7620 6.837471 GGATACAATCTCTCGGGTATAGTT 57.163 41.667 0.00 0.00 0.00 2.24
6381 7623 7.177041 GGATACAATCTCTCGGGTATAGTTCTT 59.823 40.741 0.00 0.00 0.00 2.52
6620 7862 2.704572 ACTGCTGAAGAGGTACATTGC 58.295 47.619 0.00 0.00 0.00 3.56
6646 7888 4.022329 GTGTTTTTACAGCCCTGCTTATGT 60.022 41.667 0.00 0.00 36.40 2.29
6650 7892 0.405585 ACAGCCCTGCTTATGTTGGT 59.594 50.000 0.00 0.00 36.40 3.67
6667 7911 3.936372 TGGTAGCAGTGTCTTGTACTC 57.064 47.619 0.00 0.00 0.00 2.59
6669 7913 3.506455 TGGTAGCAGTGTCTTGTACTCTC 59.494 47.826 0.00 0.00 29.46 3.20
6906 8150 2.162408 GCTCAAAGACTACACCAATGGC 59.838 50.000 0.00 0.00 0.00 4.40
6993 8237 3.540314 TTGCACATGCTTTCACCTTTT 57.460 38.095 5.31 0.00 42.66 2.27
7039 8286 2.110188 TGACTGGGACACTTCTCTACCT 59.890 50.000 0.00 0.00 0.00 3.08
7040 8287 3.332783 TGACTGGGACACTTCTCTACCTA 59.667 47.826 0.00 0.00 0.00 3.08
7106 8353 8.891720 GCTCATCTTGAAGAAAATAGTGAGAAT 58.108 33.333 19.74 0.00 34.10 2.40
7162 8409 5.105269 CCTCTCTTCCTAGGTAACCTTTCAC 60.105 48.000 9.08 0.00 34.61 3.18
7214 8463 2.890808 TATTAGCGGCAGGAGTTCAG 57.109 50.000 1.45 0.00 0.00 3.02
7247 8496 4.446371 AGGCACACATCAGAGCTTAATAC 58.554 43.478 0.00 0.00 0.00 1.89
7305 8554 3.312421 CGTCATTTGTCACACTTCACCTT 59.688 43.478 0.00 0.00 0.00 3.50
7311 8560 4.322080 TGTCACACTTCACCTTGTCTAG 57.678 45.455 0.00 0.00 0.00 2.43
7313 8562 4.051922 GTCACACTTCACCTTGTCTAGTG 58.948 47.826 0.00 0.00 41.42 2.74
7353 8602 3.127895 TGGTTTGACAAGAAGGTGAAACG 59.872 43.478 0.00 0.00 43.08 3.60
7355 8604 4.495844 GGTTTGACAAGAAGGTGAAACGAG 60.496 45.833 0.00 0.00 43.08 4.18
7362 8611 2.567615 AGAAGGTGAAACGAGCCTATGT 59.432 45.455 0.00 0.00 38.12 2.29
7371 8620 7.387948 GGTGAAACGAGCCTATGTTAATATGAT 59.612 37.037 0.00 0.00 38.12 2.45
7415 8701 6.932400 ACACTTTAACTCCGATGACAATGTTA 59.068 34.615 0.00 0.00 0.00 2.41
7460 8746 3.005684 GGTGAAATGAGCCAATGTTGACA 59.994 43.478 0.00 0.00 0.00 3.58
7556 8845 4.024641 GGTTTTTCAATTGGCAGCTGAAAG 60.025 41.667 20.43 1.40 39.51 2.62
7586 8875 7.599998 GGTTTGTAGAATTGACTAACCGAACTA 59.400 37.037 13.82 0.00 40.92 2.24
7612 8901 6.140737 GTGCAGTCAAATTCAGTTTTAAGTCG 59.859 38.462 0.00 0.00 0.00 4.18
7630 8919 2.481185 GTCGCGGTTAACTGAAAATCCA 59.519 45.455 18.81 0.00 0.00 3.41
7643 8932 4.688021 TGAAAATCCAAAGAAAACCACCG 58.312 39.130 0.00 0.00 0.00 4.94
7651 8940 0.250597 AGAAAACCACCGTGTAGGGC 60.251 55.000 0.00 0.00 46.96 5.19
7723 9012 0.106469 ATCTCGCTGAGACTAGGGCA 60.106 55.000 9.85 0.00 41.76 5.36
7743 9032 0.815095 CATGCAGCCACACACATCAT 59.185 50.000 0.00 0.00 0.00 2.45
7763 9052 1.141019 CCTGCATGCCATGAACAGC 59.859 57.895 16.68 0.00 0.00 4.40
7770 9059 1.971167 GCCATGAACAGCCGAACCA 60.971 57.895 0.00 0.00 0.00 3.67
7774 9063 1.336440 CATGAACAGCCGAACCAAACA 59.664 47.619 0.00 0.00 0.00 2.83
7793 9082 3.746949 CTGCCATCTCCCTCACGCC 62.747 68.421 0.00 0.00 0.00 5.68
7794 9083 4.899239 GCCATCTCCCTCACGCCG 62.899 72.222 0.00 0.00 0.00 6.46
7795 9084 4.899239 CCATCTCCCTCACGCCGC 62.899 72.222 0.00 0.00 0.00 6.53
7796 9085 3.842923 CATCTCCCTCACGCCGCT 61.843 66.667 0.00 0.00 0.00 5.52
7797 9086 2.123854 ATCTCCCTCACGCCGCTA 60.124 61.111 0.00 0.00 0.00 4.26
7798 9087 2.196925 ATCTCCCTCACGCCGCTAG 61.197 63.158 0.00 0.00 0.00 3.42
7815 9104 0.110104 TAGCGCTAGGACCTAGGACC 59.890 60.000 26.58 21.31 34.88 4.46
7849 9138 1.078214 CATCCCGCCTCTGAGCAAA 60.078 57.895 0.00 0.00 0.00 3.68
7878 9167 3.717294 GGATCCCTGGCACACCGT 61.717 66.667 0.00 0.00 39.70 4.83
7881 9170 2.257409 GATCCCTGGCACACCGTGAT 62.257 60.000 5.28 0.00 39.70 3.06
7983 9303 5.320549 AGTGAAATCGTAACGACCACTAT 57.679 39.130 1.20 0.00 40.06 2.12
7984 9304 5.100259 AGTGAAATCGTAACGACCACTATG 58.900 41.667 1.20 0.00 40.06 2.23
7986 9306 5.346822 GTGAAATCGTAACGACCACTATGTT 59.653 40.000 0.00 0.00 39.18 2.71
7987 9307 6.527722 GTGAAATCGTAACGACCACTATGTTA 59.472 38.462 0.00 0.00 39.18 2.41
7988 9308 7.062138 GTGAAATCGTAACGACCACTATGTTAA 59.938 37.037 0.00 0.00 39.18 2.01
7989 9309 7.760794 TGAAATCGTAACGACCACTATGTTAAT 59.239 33.333 0.00 0.00 39.18 1.40
7990 9310 7.459394 AATCGTAACGACCACTATGTTAATG 57.541 36.000 0.00 0.00 39.18 1.90
7991 9311 5.342433 TCGTAACGACCACTATGTTAATGG 58.658 41.667 0.00 0.00 39.57 3.16
8035 9357 4.122046 GAGCATAAAATTTGGGCCATGTC 58.878 43.478 7.26 0.00 0.00 3.06
8036 9358 3.518705 AGCATAAAATTTGGGCCATGTCA 59.481 39.130 7.26 0.00 0.00 3.58
8092 9414 8.208224 TGTAGAACATTGAAGTCAACTTTCCTA 58.792 33.333 10.66 2.45 38.86 2.94
8093 9415 9.220767 GTAGAACATTGAAGTCAACTTTCCTAT 57.779 33.333 10.66 0.60 38.86 2.57
8110 9432 3.958798 TCCTATGTACTGTTAGGCTGGTC 59.041 47.826 0.00 0.00 35.85 4.02
8148 9470 4.623886 GCCAGGAGATGATACACACTTCAA 60.624 45.833 0.00 0.00 0.00 2.69
8152 9474 7.414873 CCAGGAGATGATACACACTTCAAATTG 60.415 40.741 0.00 0.00 0.00 2.32
8153 9475 6.094603 AGGAGATGATACACACTTCAAATTGC 59.905 38.462 0.00 0.00 0.00 3.56
8154 9476 6.199937 AGATGATACACACTTCAAATTGCC 57.800 37.500 0.00 0.00 0.00 4.52
8155 9477 4.782019 TGATACACACTTCAAATTGCCC 57.218 40.909 0.00 0.00 0.00 5.36
8203 9593 5.375417 TGCGAACTGATTCATGAAACATT 57.625 34.783 17.56 10.35 34.14 2.71
8636 10026 1.233285 CGGCAAAGTCAGCTTGCTCT 61.233 55.000 7.24 0.00 34.71 4.09
8738 10128 1.142748 GGACATGAGAGCACCTCCG 59.857 63.158 0.00 0.00 41.25 4.63
8747 10137 0.036388 GAGCACCTCCGTTCCATCAA 60.036 55.000 0.00 0.00 0.00 2.57
8971 10362 0.669318 TGGCTAACGAAACAGCGAGG 60.669 55.000 0.00 0.00 38.73 4.63
8987 10378 0.391263 GAGGAACGAAGTGGCGGATT 60.391 55.000 0.00 0.00 45.00 3.01
9093 10489 3.060205 GTGTGAAGCTCTTCGTTCTGTTC 60.060 47.826 5.30 0.00 42.28 3.18
9219 10615 2.726351 GGCGAGGAGACAGAAGGGG 61.726 68.421 0.00 0.00 0.00 4.79
9403 10801 4.401519 CAGATGATCATTTCCTGTTTGCCT 59.598 41.667 10.14 0.00 0.00 4.75
9546 11163 4.159135 GCATTTTGATGGTGGTGAAGAGAT 59.841 41.667 0.00 0.00 0.00 2.75
9598 11215 6.142259 TCTATCTACTCCCTCCATTCCTAC 57.858 45.833 0.00 0.00 0.00 3.18
9602 11219 2.472029 ACTCCCTCCATTCCTACTGTG 58.528 52.381 0.00 0.00 0.00 3.66
9604 11221 0.181350 CCCTCCATTCCTACTGTGGC 59.819 60.000 0.00 0.00 33.01 5.01
9605 11222 1.207791 CCTCCATTCCTACTGTGGCT 58.792 55.000 0.00 0.00 33.01 4.75
9606 11223 1.139853 CCTCCATTCCTACTGTGGCTC 59.860 57.143 0.00 0.00 33.01 4.70
9622 11240 1.067354 GGCTCTGAAAAATGCCACTGG 60.067 52.381 0.00 0.00 44.34 4.00
9665 11283 2.053627 CAAATTGCAGTGGCGTTTCTC 58.946 47.619 0.00 0.00 45.35 2.87
9673 11291 1.012486 GTGGCGTTTCTCGGAATCGT 61.012 55.000 14.33 0.00 40.26 3.73
9750 11368 2.501723 TGAGGCAGTCTTATCCCACTTC 59.498 50.000 0.00 0.00 0.00 3.01
9777 11402 2.489329 GCACACATACTCCAAAGCATGT 59.511 45.455 0.00 0.00 39.61 3.21
9782 11407 3.753272 ACATACTCCAAAGCATGTGTGTC 59.247 43.478 0.00 0.00 37.96 3.67
9783 11408 2.346766 ACTCCAAAGCATGTGTGTCA 57.653 45.000 0.00 0.00 0.00 3.58
9796 11421 0.108186 TGTGTCAGGCGCTATTCCAG 60.108 55.000 7.64 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.042682 TGGTCTCACTGGGAAAGTAACA 58.957 45.455 0.00 0.00 36.83 2.41
6 7 3.181458 TGTGGTCTCACTGGGAAAGTAAC 60.181 47.826 0.00 0.00 43.94 2.50
7 8 3.042682 TGTGGTCTCACTGGGAAAGTAA 58.957 45.455 0.00 0.00 43.94 2.24
8 9 2.684943 TGTGGTCTCACTGGGAAAGTA 58.315 47.619 0.00 0.00 43.94 2.24
9 10 1.507140 TGTGGTCTCACTGGGAAAGT 58.493 50.000 0.00 0.00 43.94 2.66
10 11 2.222027 GTTGTGGTCTCACTGGGAAAG 58.778 52.381 0.00 0.00 43.94 2.62
11 12 1.133915 GGTTGTGGTCTCACTGGGAAA 60.134 52.381 0.00 0.00 43.94 3.13
12 13 0.472471 GGTTGTGGTCTCACTGGGAA 59.528 55.000 0.00 0.00 43.94 3.97
13 14 0.399949 AGGTTGTGGTCTCACTGGGA 60.400 55.000 0.00 0.00 43.94 4.37
14 15 1.348064 TAGGTTGTGGTCTCACTGGG 58.652 55.000 0.00 0.00 43.94 4.45
15 16 2.567169 TCATAGGTTGTGGTCTCACTGG 59.433 50.000 0.00 0.00 43.94 4.00
16 17 3.961480 TCATAGGTTGTGGTCTCACTG 57.039 47.619 0.00 0.00 43.94 3.66
17 18 5.248640 CAATTCATAGGTTGTGGTCTCACT 58.751 41.667 0.00 0.00 43.94 3.41
18 19 4.396166 CCAATTCATAGGTTGTGGTCTCAC 59.604 45.833 0.00 0.00 43.87 3.51
19 20 4.288366 TCCAATTCATAGGTTGTGGTCTCA 59.712 41.667 0.00 0.00 0.00 3.27
20 21 4.843728 TCCAATTCATAGGTTGTGGTCTC 58.156 43.478 0.00 0.00 0.00 3.36
21 22 4.324563 CCTCCAATTCATAGGTTGTGGTCT 60.325 45.833 0.00 0.00 0.00 3.85
22 23 3.947834 CCTCCAATTCATAGGTTGTGGTC 59.052 47.826 0.00 0.00 0.00 4.02
23 24 3.591527 TCCTCCAATTCATAGGTTGTGGT 59.408 43.478 0.00 0.00 0.00 4.16
24 25 4.080356 TCTCCTCCAATTCATAGGTTGTGG 60.080 45.833 0.00 0.00 0.00 4.17
25 26 5.102953 TCTCCTCCAATTCATAGGTTGTG 57.897 43.478 0.00 0.00 0.00 3.33
26 27 4.785376 ACTCTCCTCCAATTCATAGGTTGT 59.215 41.667 0.00 0.00 0.00 3.32
27 28 5.365021 ACTCTCCTCCAATTCATAGGTTG 57.635 43.478 0.00 0.00 0.00 3.77
28 29 7.698163 ATTACTCTCCTCCAATTCATAGGTT 57.302 36.000 0.00 0.00 0.00 3.50
29 30 7.698163 AATTACTCTCCTCCAATTCATAGGT 57.302 36.000 0.00 0.00 0.00 3.08
30 31 9.495572 GTTAATTACTCTCCTCCAATTCATAGG 57.504 37.037 0.00 0.00 0.00 2.57
31 32 9.495572 GGTTAATTACTCTCCTCCAATTCATAG 57.504 37.037 0.00 0.00 0.00 2.23
32 33 8.148351 CGGTTAATTACTCTCCTCCAATTCATA 58.852 37.037 0.00 0.00 0.00 2.15
33 34 6.992715 CGGTTAATTACTCTCCTCCAATTCAT 59.007 38.462 0.00 0.00 0.00 2.57
34 35 6.346096 CGGTTAATTACTCTCCTCCAATTCA 58.654 40.000 0.00 0.00 0.00 2.57
35 36 5.236695 GCGGTTAATTACTCTCCTCCAATTC 59.763 44.000 0.00 0.00 0.00 2.17
36 37 5.104485 AGCGGTTAATTACTCTCCTCCAATT 60.104 40.000 0.00 0.00 0.00 2.32
37 38 4.409247 AGCGGTTAATTACTCTCCTCCAAT 59.591 41.667 0.00 0.00 0.00 3.16
63 64 0.179045 AACCATGGAGCTCGCCATAC 60.179 55.000 21.47 0.00 46.70 2.39
64 65 1.419381 TAACCATGGAGCTCGCCATA 58.581 50.000 21.47 0.00 46.70 2.74
67 68 0.603975 GGATAACCATGGAGCTCGCC 60.604 60.000 21.47 8.01 35.97 5.54
68 69 0.106708 TGGATAACCATGGAGCTCGC 59.893 55.000 21.47 1.18 41.77 5.03
87 93 4.589908 AGGGCATTAAACATTTCTCTCGT 58.410 39.130 0.00 0.00 0.00 4.18
89 95 7.606349 AGAAAAGGGCATTAAACATTTCTCTC 58.394 34.615 0.00 0.00 31.93 3.20
90 96 7.544804 AGAAAAGGGCATTAAACATTTCTCT 57.455 32.000 0.00 0.00 31.93 3.10
102 108 6.836007 CCTCCTATTTAGAAGAAAAGGGCATT 59.164 38.462 0.00 0.00 0.00 3.56
104 110 5.340027 CCCTCCTATTTAGAAGAAAAGGGCA 60.340 44.000 0.00 0.00 0.00 5.36
157 164 5.470098 GTGTTTTAGGATGCGATATCATGGT 59.530 40.000 3.12 0.00 0.00 3.55
158 165 5.469760 TGTGTTTTAGGATGCGATATCATGG 59.530 40.000 3.12 0.00 0.00 3.66
169 176 3.252215 TCCGTTTGCTGTGTTTTAGGATG 59.748 43.478 0.00 0.00 0.00 3.51
170 177 3.482436 TCCGTTTGCTGTGTTTTAGGAT 58.518 40.909 0.00 0.00 0.00 3.24
182 189 3.377172 GCCAGTGTTATTATCCGTTTGCT 59.623 43.478 0.00 0.00 0.00 3.91
196 203 0.036952 CACTCCGATGAGCCAGTGTT 60.037 55.000 0.00 0.00 42.74 3.32
238 250 9.889128 CCATTTGTTATGGTTCCAAAAATCTAT 57.111 29.630 0.00 0.00 34.56 1.98
239 251 7.821846 GCCATTTGTTATGGTTCCAAAAATCTA 59.178 33.333 5.75 0.00 41.17 1.98
240 252 6.654582 GCCATTTGTTATGGTTCCAAAAATCT 59.345 34.615 5.75 0.00 41.17 2.40
241 253 6.128035 GGCCATTTGTTATGGTTCCAAAAATC 60.128 38.462 0.00 0.00 41.17 2.17
242 254 5.709631 GGCCATTTGTTATGGTTCCAAAAAT 59.290 36.000 0.00 0.00 41.17 1.82
243 255 5.066593 GGCCATTTGTTATGGTTCCAAAAA 58.933 37.500 0.00 0.00 41.17 1.94
244 256 4.103153 TGGCCATTTGTTATGGTTCCAAAA 59.897 37.500 0.00 0.00 41.17 2.44
272 284 2.167693 TCAGTGGTAGTTTATGCTCGGG 59.832 50.000 0.00 0.00 0.00 5.14
273 285 3.520290 TCAGTGGTAGTTTATGCTCGG 57.480 47.619 0.00 0.00 0.00 4.63
285 297 8.547481 TTGGTATCTTCTCATAATCAGTGGTA 57.453 34.615 0.00 0.00 0.00 3.25
411 427 3.312697 GCCTCGTCTGACCCATTTTTATC 59.687 47.826 1.55 0.00 0.00 1.75
474 500 2.207229 GCCTGGGGTTGGTTGGAAC 61.207 63.158 0.00 0.00 0.00 3.62
604 631 2.359230 GGAGGCAGGCAGTGTGTC 60.359 66.667 0.00 0.00 0.00 3.67
618 645 1.133792 GTGGAGAGGAGAGGAGAGGAG 60.134 61.905 0.00 0.00 0.00 3.69
619 646 0.923358 GTGGAGAGGAGAGGAGAGGA 59.077 60.000 0.00 0.00 0.00 3.71
620 647 0.106217 GGTGGAGAGGAGAGGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
621 648 0.106217 GGGTGGAGAGGAGAGGAGAG 60.106 65.000 0.00 0.00 0.00 3.20
622 649 1.927569 CGGGTGGAGAGGAGAGGAGA 61.928 65.000 0.00 0.00 0.00 3.71
704 737 1.846439 CCCTCTCTCTCTCTCTCCTGT 59.154 57.143 0.00 0.00 0.00 4.00
705 738 2.105477 CTCCCTCTCTCTCTCTCTCCTG 59.895 59.091 0.00 0.00 0.00 3.86
806 847 4.570663 GGGCGGATCGTGAGACGG 62.571 72.222 0.00 0.00 46.97 4.79
903 949 1.026718 CAAGCCCACCTCCGAATCAC 61.027 60.000 0.00 0.00 0.00 3.06
904 950 1.299648 CAAGCCCACCTCCGAATCA 59.700 57.895 0.00 0.00 0.00 2.57
905 951 1.452108 CCAAGCCCACCTCCGAATC 60.452 63.158 0.00 0.00 0.00 2.52
915 961 0.534412 CAACAACAACACCAAGCCCA 59.466 50.000 0.00 0.00 0.00 5.36
947 993 2.046604 GGTTCCCCTGTGCCGTAC 60.047 66.667 0.00 0.00 0.00 3.67
953 999 0.978146 ATCTCCTCGGTTCCCCTGTG 60.978 60.000 0.00 0.00 0.00 3.66
956 1002 0.691413 GGAATCTCCTCGGTTCCCCT 60.691 60.000 0.00 0.00 36.29 4.79
962 1008 3.155167 GCCCGGAATCTCCTCGGT 61.155 66.667 0.73 0.00 41.98 4.69
1126 1172 7.754069 CAAAGCATTGCCTCGAAATAATAAA 57.246 32.000 4.70 0.00 0.00 1.40
1206 1255 3.130340 GCCCAGAACAGAAACAAGAAACA 59.870 43.478 0.00 0.00 0.00 2.83
1384 1437 8.249638 ACCGACATGATCATATTAGAGATTCAG 58.750 37.037 8.15 0.00 0.00 3.02
1539 1592 3.715495 ACTTTTGCATGTGAATTGCGAA 58.285 36.364 0.00 0.00 43.10 4.70
1665 1724 1.596934 GTGCACAGATCGGGGAGAA 59.403 57.895 13.17 0.00 0.00 2.87
1666 1725 2.710902 CGTGCACAGATCGGGGAGA 61.711 63.158 18.64 0.00 0.00 3.71
1667 1726 2.202797 CGTGCACAGATCGGGGAG 60.203 66.667 18.64 0.00 0.00 4.30
1668 1727 2.678580 TCGTGCACAGATCGGGGA 60.679 61.111 18.64 0.00 0.00 4.81
1669 1728 2.202797 CTCGTGCACAGATCGGGG 60.203 66.667 18.64 0.00 0.00 5.73
1670 1729 2.887568 GCTCGTGCACAGATCGGG 60.888 66.667 18.64 3.01 39.41 5.14
1876 1935 1.134729 GGGTCGCAAAAATGATGGCAT 60.135 47.619 0.00 0.00 35.92 4.40
2348 2407 8.341477 ACGACATAAATATCTTTGAAGTCTCG 57.659 34.615 0.00 0.00 0.00 4.04
2446 2505 6.602009 CCCGGAGTAATTGGTAAAGAAAGAAT 59.398 38.462 0.73 0.00 0.00 2.40
2479 2538 5.786311 TGTTACCTACCAGTGTGAATGTAC 58.214 41.667 0.00 0.00 0.00 2.90
2514 2667 5.116831 CAGCGACATATGATCTTCGAGAAAG 59.883 44.000 10.38 0.00 36.22 2.62
2515 2668 4.978580 CAGCGACATATGATCTTCGAGAAA 59.021 41.667 10.38 0.00 33.20 2.52
2517 2670 3.057946 CCAGCGACATATGATCTTCGAGA 60.058 47.826 10.38 0.00 33.20 4.04
2518 2671 3.057946 TCCAGCGACATATGATCTTCGAG 60.058 47.826 10.38 4.83 33.20 4.04
2520 2673 2.983136 GTCCAGCGACATATGATCTTCG 59.017 50.000 10.38 9.33 38.99 3.79
2521 2674 3.243873 TGGTCCAGCGACATATGATCTTC 60.244 47.826 10.38 0.00 41.13 2.87
2522 2675 2.700371 TGGTCCAGCGACATATGATCTT 59.300 45.455 10.38 0.00 41.13 2.40
2523 2676 2.319844 TGGTCCAGCGACATATGATCT 58.680 47.619 10.38 0.10 41.13 2.75
2537 2692 5.647658 CAGAGCAAATTTACTGTATGGTCCA 59.352 40.000 12.28 0.00 38.83 4.02
2561 2716 2.028112 TGACCTGATACAAGCTCACCAC 60.028 50.000 0.00 0.00 0.00 4.16
2562 2717 2.028112 GTGACCTGATACAAGCTCACCA 60.028 50.000 0.00 0.00 0.00 4.17
2563 2718 2.622436 GTGACCTGATACAAGCTCACC 58.378 52.381 0.00 0.00 0.00 4.02
2568 2723 1.739067 GGTGGTGACCTGATACAAGC 58.261 55.000 2.11 0.00 39.47 4.01
2674 3373 9.716531 TCAGCTAATCTAATATATGCCATATGC 57.283 33.333 7.47 0.00 41.77 3.14
2747 3558 2.361085 ATCTTCCCTACCCAACCAGT 57.639 50.000 0.00 0.00 0.00 4.00
2760 3571 6.599638 GGCCATATGTTTATCACCTATCTTCC 59.400 42.308 0.00 0.00 0.00 3.46
2766 3577 6.237901 GTGATGGCCATATGTTTATCACCTA 58.762 40.000 20.84 0.00 38.79 3.08
2783 3594 5.535333 CATATTTGGAATTCAGGTGATGGC 58.465 41.667 7.93 0.00 0.00 4.40
2791 3602 7.541162 TGTTTCTGAGCATATTTGGAATTCAG 58.459 34.615 7.93 0.00 33.63 3.02
2799 3610 7.591006 AATTTGCTGTTTCTGAGCATATTTG 57.409 32.000 0.00 0.00 45.69 2.32
2811 3622 7.852945 CCTACGATTGAGATAATTTGCTGTTTC 59.147 37.037 0.00 0.00 0.00 2.78
2819 3630 7.607991 CCCTAATGCCTACGATTGAGATAATTT 59.392 37.037 0.00 0.00 0.00 1.82
2828 3639 1.420138 ACCCCCTAATGCCTACGATTG 59.580 52.381 0.00 0.00 0.00 2.67
2845 3659 5.946377 AGAAAATCTATCCTGTTGTTCACCC 59.054 40.000 0.00 0.00 0.00 4.61
2854 3668 9.829507 CACTCTATGAAAGAAAATCTATCCTGT 57.170 33.333 0.00 0.00 32.46 4.00
2932 3748 7.238486 ACCATTTGAACCAGCAAATATGTAA 57.762 32.000 0.00 0.00 44.30 2.41
2962 3778 3.916359 TGAAAAGACTACCACCACACA 57.084 42.857 0.00 0.00 0.00 3.72
2998 3814 6.173339 GTTCATGGAAAGAACTGTGGAGATA 58.827 40.000 0.00 0.00 41.56 1.98
3081 3944 7.078249 TGCAGTTACATATGGTCATAGGATT 57.922 36.000 7.80 0.00 0.00 3.01
3084 3947 4.692625 GCTGCAGTTACATATGGTCATAGG 59.307 45.833 16.64 1.66 0.00 2.57
3090 3953 5.684704 ACATTAGCTGCAGTTACATATGGT 58.315 37.500 16.64 2.84 0.00 3.55
3216 4079 5.998981 ACATACCGTCCAAAAGATTGTTGTA 59.001 36.000 0.00 0.00 34.60 2.41
3258 4122 2.503765 TCGGAAATGTAAGGATGGCAGA 59.496 45.455 0.00 0.00 0.00 4.26
3277 4141 6.602179 TGATTAGCTCAAATCAAACAAGTCG 58.398 36.000 9.07 0.00 41.67 4.18
3408 4272 9.860898 AAATTCAACCAAGAGAATGCTAATAAC 57.139 29.630 0.00 0.00 34.86 1.89
3446 4310 2.096220 ATGTCAAGCTGTCAGCAGAG 57.904 50.000 26.23 14.93 45.56 3.35
3448 4312 2.093310 CGTTATGTCAAGCTGTCAGCAG 59.907 50.000 26.23 17.68 45.56 4.24
3449 4313 2.068519 CGTTATGTCAAGCTGTCAGCA 58.931 47.619 26.23 5.92 45.56 4.41
3458 4322 7.456253 CACCATTAGTCTTTCGTTATGTCAAG 58.544 38.462 0.00 0.00 0.00 3.02
3459 4323 6.128391 GCACCATTAGTCTTTCGTTATGTCAA 60.128 38.462 0.00 0.00 0.00 3.18
3463 4327 5.727791 GCAGCACCATTAGTCTTTCGTTATG 60.728 44.000 0.00 0.00 0.00 1.90
3470 4334 2.185004 ACGCAGCACCATTAGTCTTT 57.815 45.000 0.00 0.00 0.00 2.52
3471 4335 1.806542 CAACGCAGCACCATTAGTCTT 59.193 47.619 0.00 0.00 0.00 3.01
3492 4356 5.182487 TGTAACGAAAGATGCATGGTATGT 58.818 37.500 2.46 0.00 0.00 2.29
3539 4403 2.139917 CCAATCACCGAAGAACAACGA 58.860 47.619 0.00 0.00 0.00 3.85
3541 4405 2.225727 GGACCAATCACCGAAGAACAAC 59.774 50.000 0.00 0.00 0.00 3.32
3544 4408 2.178912 TGGACCAATCACCGAAGAAC 57.821 50.000 0.00 0.00 0.00 3.01
3611 4475 4.081198 GGAGATGCCCTAAGATCTGTATGG 60.081 50.000 0.00 0.00 0.00 2.74
3612 4476 4.529769 TGGAGATGCCCTAAGATCTGTATG 59.470 45.833 0.00 0.00 34.97 2.39
3613 4477 4.756564 TGGAGATGCCCTAAGATCTGTAT 58.243 43.478 0.00 0.00 34.97 2.29
3614 4478 4.199002 TGGAGATGCCCTAAGATCTGTA 57.801 45.455 0.00 0.00 34.97 2.74
3615 4479 3.051940 TGGAGATGCCCTAAGATCTGT 57.948 47.619 0.00 0.00 34.97 3.41
3616 4480 3.737850 GTTGGAGATGCCCTAAGATCTG 58.262 50.000 0.00 0.00 34.97 2.90
3617 4481 2.366916 CGTTGGAGATGCCCTAAGATCT 59.633 50.000 0.00 0.00 34.97 2.75
3618 4482 2.548920 CCGTTGGAGATGCCCTAAGATC 60.549 54.545 0.00 0.00 34.97 2.75
3619 4483 1.417890 CCGTTGGAGATGCCCTAAGAT 59.582 52.381 0.00 0.00 34.97 2.40
3620 4484 0.830648 CCGTTGGAGATGCCCTAAGA 59.169 55.000 0.00 0.00 34.97 2.10
3621 4485 0.815615 GCCGTTGGAGATGCCCTAAG 60.816 60.000 0.00 0.00 34.97 2.18
3622 4486 1.223487 GCCGTTGGAGATGCCCTAA 59.777 57.895 0.00 0.00 34.97 2.69
3623 4487 1.558167 TTGCCGTTGGAGATGCCCTA 61.558 55.000 0.00 0.00 34.97 3.53
3624 4488 2.905996 TTGCCGTTGGAGATGCCCT 61.906 57.895 0.00 0.00 34.97 5.19
3625 4489 2.361104 TTGCCGTTGGAGATGCCC 60.361 61.111 0.00 0.00 34.97 5.36
3626 4490 2.700773 GGTTGCCGTTGGAGATGCC 61.701 63.158 0.00 0.00 37.10 4.40
3627 4491 2.700773 GGGTTGCCGTTGGAGATGC 61.701 63.158 0.00 0.00 0.00 3.91
3628 4492 2.398554 CGGGTTGCCGTTGGAGATG 61.399 63.158 0.00 0.00 0.00 2.90
3629 4493 2.046314 CGGGTTGCCGTTGGAGAT 60.046 61.111 0.00 0.00 0.00 2.75
3632 4496 4.877619 TTGCGGGTTGCCGTTGGA 62.878 61.111 0.00 0.00 45.60 3.53
3633 4497 2.707529 AATTTGCGGGTTGCCGTTGG 62.708 55.000 0.00 0.00 45.60 3.77
3634 4498 0.878086 AAATTTGCGGGTTGCCGTTG 60.878 50.000 0.00 0.00 45.60 4.10
3635 4499 0.598942 GAAATTTGCGGGTTGCCGTT 60.599 50.000 0.00 0.00 45.60 4.44
3636 4500 1.006688 GAAATTTGCGGGTTGCCGT 60.007 52.632 0.00 0.00 45.60 5.68
3637 4501 1.736282 GGAAATTTGCGGGTTGCCG 60.736 57.895 0.00 0.00 45.60 5.69
3638 4502 0.389817 GAGGAAATTTGCGGGTTGCC 60.390 55.000 3.87 0.00 45.60 4.52
3639 4503 0.389817 GGAGGAAATTTGCGGGTTGC 60.390 55.000 3.87 0.00 46.70 4.17
3640 4504 0.246360 GGGAGGAAATTTGCGGGTTG 59.754 55.000 3.87 0.00 0.00 3.77
3641 4505 1.248101 CGGGAGGAAATTTGCGGGTT 61.248 55.000 3.87 0.00 0.00 4.11
3642 4506 1.677633 CGGGAGGAAATTTGCGGGT 60.678 57.895 3.87 0.00 0.00 5.28
3643 4507 3.063743 GCGGGAGGAAATTTGCGGG 62.064 63.158 3.87 0.00 0.00 6.13
3644 4508 1.666209 ATGCGGGAGGAAATTTGCGG 61.666 55.000 3.87 0.00 0.00 5.69
3645 4509 0.248621 GATGCGGGAGGAAATTTGCG 60.249 55.000 3.87 0.00 0.00 4.85
3646 4510 0.103026 GGATGCGGGAGGAAATTTGC 59.897 55.000 0.68 0.68 0.00 3.68
3647 4511 0.381801 CGGATGCGGGAGGAAATTTG 59.618 55.000 0.00 0.00 0.00 2.32
3648 4512 0.034477 ACGGATGCGGGAGGAAATTT 60.034 50.000 12.44 0.00 0.00 1.82
3649 4513 0.463833 GACGGATGCGGGAGGAAATT 60.464 55.000 12.44 0.00 0.00 1.82
3650 4514 1.146263 GACGGATGCGGGAGGAAAT 59.854 57.895 12.44 0.00 0.00 2.17
3651 4515 2.582436 GACGGATGCGGGAGGAAA 59.418 61.111 12.44 0.00 0.00 3.13
3652 4516 3.467226 GGACGGATGCGGGAGGAA 61.467 66.667 12.44 0.00 0.00 3.36
3666 4530 0.390735 ATGTTTACCAGTCCGCGGAC 60.391 55.000 43.92 43.92 44.86 4.79
3667 4531 0.390603 CATGTTTACCAGTCCGCGGA 60.391 55.000 27.28 27.28 0.00 5.54
3668 4532 0.390603 TCATGTTTACCAGTCCGCGG 60.391 55.000 22.12 22.12 0.00 6.46
3669 4533 0.719465 GTCATGTTTACCAGTCCGCG 59.281 55.000 0.00 0.00 0.00 6.46
3670 4534 0.719465 CGTCATGTTTACCAGTCCGC 59.281 55.000 0.00 0.00 0.00 5.54
3671 4535 1.067425 TCCGTCATGTTTACCAGTCCG 60.067 52.381 0.00 0.00 0.00 4.79
3672 4536 2.754946 TCCGTCATGTTTACCAGTCC 57.245 50.000 0.00 0.00 0.00 3.85
3673 4537 4.693566 TGAAATCCGTCATGTTTACCAGTC 59.306 41.667 0.00 0.00 0.00 3.51
3674 4538 4.647611 TGAAATCCGTCATGTTTACCAGT 58.352 39.130 0.00 0.00 0.00 4.00
3675 4539 5.818136 ATGAAATCCGTCATGTTTACCAG 57.182 39.130 0.00 0.00 36.86 4.00
3676 4540 6.174049 TGTATGAAATCCGTCATGTTTACCA 58.826 36.000 0.00 0.00 38.69 3.25
3677 4541 6.671614 TGTATGAAATCCGTCATGTTTACC 57.328 37.500 0.00 0.00 38.69 2.85
3678 4542 8.018520 TGTTTGTATGAAATCCGTCATGTTTAC 58.981 33.333 0.00 0.00 38.69 2.01
3744 4608 2.484742 TTAGGGTCGGCTCTTTTTCC 57.515 50.000 0.00 0.00 0.00 3.13
3745 4609 2.486982 GGTTTAGGGTCGGCTCTTTTTC 59.513 50.000 0.00 0.00 0.00 2.29
3844 4722 2.351726 AGACCGCAACTAAATTCATCGC 59.648 45.455 0.00 0.00 0.00 4.58
3852 4730 1.610038 TCGTCAGAGACCGCAACTAAA 59.390 47.619 0.00 0.00 0.00 1.85
3854 4732 2.936928 TCGTCAGAGACCGCAACTA 58.063 52.632 0.00 0.00 0.00 2.24
3867 4746 2.483106 CGTGTTCTACTCTTCCTCGTCA 59.517 50.000 0.00 0.00 0.00 4.35
3933 4816 0.757188 CCGAGGATCAGTAGGGCACT 60.757 60.000 0.00 0.00 38.32 4.40
3944 4827 1.791103 CGCAGACTCCTCCGAGGATC 61.791 65.000 17.80 15.74 44.81 3.36
3993 4876 2.571212 GGCATCACCATTTCCATCGTA 58.429 47.619 0.00 0.00 38.86 3.43
4040 4924 0.322187 TCCGCCGATGATCTATCCGA 60.322 55.000 0.00 0.00 31.82 4.55
4048 4932 3.544607 AGCTGCTCCGCCGATGAT 61.545 61.111 0.00 0.00 0.00 2.45
4059 4965 1.963338 GAGAACAACGCCAGCTGCT 60.963 57.895 8.66 0.00 38.05 4.24
4272 5182 6.351371 CCTCTATCAGTGGTACAACATGTTCT 60.351 42.308 8.48 0.00 44.16 3.01
4310 5220 7.935755 ACGATATTCACCATCTCATCAAAAGAT 59.064 33.333 0.00 0.00 33.74 2.40
4316 5226 5.691754 CGAAACGATATTCACCATCTCATCA 59.308 40.000 0.00 0.00 0.00 3.07
4339 5249 2.082231 TCGTGAAAGTCTACTCCTCCG 58.918 52.381 0.00 0.00 0.00 4.63
4406 5317 3.194968 GGTCAATAACCTCTCGGAGTTGA 59.805 47.826 4.69 3.85 45.45 3.18
4433 5344 1.675714 GGTCACGTTGATCATGCTCCA 60.676 52.381 0.00 0.00 0.00 3.86
4784 5697 3.428862 CCAGGCCCATGTAATTTCGAAAC 60.429 47.826 13.81 1.68 0.00 2.78
5120 6035 4.476410 TAGAGCTCGTGCACGCCG 62.476 66.667 33.63 25.71 42.74 6.46
5202 6117 0.179020 TGCAGGAGGAACAGTGGTTG 60.179 55.000 0.00 0.00 37.36 3.77
5203 6118 0.179018 GTGCAGGAGGAACAGTGGTT 60.179 55.000 0.00 0.00 40.76 3.67
5204 6119 1.451936 GTGCAGGAGGAACAGTGGT 59.548 57.895 0.00 0.00 0.00 4.16
5205 6120 1.302832 GGTGCAGGAGGAACAGTGG 60.303 63.158 0.00 0.00 0.00 4.00
5206 6121 0.604780 CAGGTGCAGGAGGAACAGTG 60.605 60.000 0.00 0.00 0.00 3.66
5207 6122 1.757306 CAGGTGCAGGAGGAACAGT 59.243 57.895 0.00 0.00 0.00 3.55
5265 6180 2.589157 CCGGCTAACTCCACACCCA 61.589 63.158 0.00 0.00 0.00 4.51
5267 6182 2.267961 CCCGGCTAACTCCACACC 59.732 66.667 0.00 0.00 0.00 4.16
5268 6183 1.375523 CACCCGGCTAACTCCACAC 60.376 63.158 0.00 0.00 0.00 3.82
5320 6539 4.309950 GACGCACCCGGACACCTT 62.310 66.667 0.73 0.00 39.22 3.50
5324 6543 2.358125 CATTGACGCACCCGGACA 60.358 61.111 0.73 0.00 39.22 4.02
5362 6587 1.451927 CCATTAAGCAGGCTCGCCA 60.452 57.895 11.02 0.00 38.92 5.69
5413 6639 2.587080 GGGACGGACATCTACCACA 58.413 57.895 0.00 0.00 0.00 4.17
5447 6688 2.993471 GCACCTGTTCAATGCCGGG 61.993 63.158 2.18 0.00 33.06 5.73
5463 6704 4.492160 GCGTCTCCGATGTCCGCA 62.492 66.667 0.00 0.00 43.53 5.69
5508 6749 2.435938 TCCGTCATTGAAGCGGCC 60.436 61.111 10.09 0.00 44.58 6.13
5521 6762 1.979693 GACCTCTCACTGCCTCCGT 60.980 63.158 0.00 0.00 0.00 4.69
5671 6913 4.779733 AGACCGATCCCACGCCCT 62.780 66.667 0.00 0.00 0.00 5.19
5729 6971 0.457853 CGGACGCGATTTTCTCTCCA 60.458 55.000 15.93 0.00 0.00 3.86
5734 6976 1.447314 GGTCCGGACGCGATTTTCT 60.447 57.895 27.68 0.00 0.00 2.52
5735 6977 2.795389 CGGTCCGGACGCGATTTTC 61.795 63.158 30.00 14.49 0.00 2.29
5736 6978 2.812178 CGGTCCGGACGCGATTTT 60.812 61.111 30.00 0.00 0.00 1.82
5773 7015 2.002018 AACCCTCAAACCTCCCGCAA 62.002 55.000 0.00 0.00 0.00 4.85
5774 7016 2.457323 AACCCTCAAACCTCCCGCA 61.457 57.895 0.00 0.00 0.00 5.69
5775 7017 1.971695 CAACCCTCAAACCTCCCGC 60.972 63.158 0.00 0.00 0.00 6.13
5776 7018 1.971695 GCAACCCTCAAACCTCCCG 60.972 63.158 0.00 0.00 0.00 5.14
5777 7019 1.606601 GGCAACCCTCAAACCTCCC 60.607 63.158 0.00 0.00 0.00 4.30
5778 7020 1.971695 CGGCAACCCTCAAACCTCC 60.972 63.158 0.00 0.00 0.00 4.30
5779 7021 0.822121 AACGGCAACCCTCAAACCTC 60.822 55.000 0.00 0.00 0.00 3.85
5780 7022 1.106944 CAACGGCAACCCTCAAACCT 61.107 55.000 0.00 0.00 0.00 3.50
5781 7023 1.362355 CAACGGCAACCCTCAAACC 59.638 57.895 0.00 0.00 0.00 3.27
5782 7024 1.104577 TCCAACGGCAACCCTCAAAC 61.105 55.000 0.00 0.00 0.00 2.93
5783 7025 0.821711 CTCCAACGGCAACCCTCAAA 60.822 55.000 0.00 0.00 0.00 2.69
5784 7026 1.228124 CTCCAACGGCAACCCTCAA 60.228 57.895 0.00 0.00 0.00 3.02
5785 7027 1.488705 ATCTCCAACGGCAACCCTCA 61.489 55.000 0.00 0.00 0.00 3.86
5786 7028 1.026718 CATCTCCAACGGCAACCCTC 61.027 60.000 0.00 0.00 0.00 4.30
5787 7029 1.002134 CATCTCCAACGGCAACCCT 60.002 57.895 0.00 0.00 0.00 4.34
5788 7030 2.700773 GCATCTCCAACGGCAACCC 61.701 63.158 0.00 0.00 0.00 4.11
5789 7031 2.700773 GGCATCTCCAACGGCAACC 61.701 63.158 0.00 0.00 34.01 3.77
5790 7032 2.700773 GGGCATCTCCAACGGCAAC 61.701 63.158 0.00 0.00 36.21 4.17
5791 7033 2.361104 GGGCATCTCCAACGGCAA 60.361 61.111 0.00 0.00 36.21 4.52
5792 7034 1.558167 TAAGGGCATCTCCAACGGCA 61.558 55.000 0.00 0.00 36.21 5.69
5793 7035 0.179018 ATAAGGGCATCTCCAACGGC 60.179 55.000 0.00 0.00 36.21 5.68
5794 7036 2.289694 CCTATAAGGGCATCTCCAACGG 60.290 54.545 0.00 0.00 36.21 4.44
5795 7037 3.045601 CCTATAAGGGCATCTCCAACG 57.954 52.381 0.00 0.00 36.21 4.10
5807 7049 7.775561 GTGCTCCCATAAAATATCCCTATAAGG 59.224 40.741 0.00 0.00 34.30 2.69
5808 7050 7.495934 CGTGCTCCCATAAAATATCCCTATAAG 59.504 40.741 0.00 0.00 0.00 1.73
5809 7051 7.181305 TCGTGCTCCCATAAAATATCCCTATAA 59.819 37.037 0.00 0.00 0.00 0.98
5810 7052 6.670464 TCGTGCTCCCATAAAATATCCCTATA 59.330 38.462 0.00 0.00 0.00 1.31
5811 7053 5.487488 TCGTGCTCCCATAAAATATCCCTAT 59.513 40.000 0.00 0.00 0.00 2.57
5812 7054 4.841813 TCGTGCTCCCATAAAATATCCCTA 59.158 41.667 0.00 0.00 0.00 3.53
5813 7055 3.650942 TCGTGCTCCCATAAAATATCCCT 59.349 43.478 0.00 0.00 0.00 4.20
5814 7056 3.751698 GTCGTGCTCCCATAAAATATCCC 59.248 47.826 0.00 0.00 0.00 3.85
5815 7057 4.213482 GTGTCGTGCTCCCATAAAATATCC 59.787 45.833 0.00 0.00 0.00 2.59
5816 7058 4.213482 GGTGTCGTGCTCCCATAAAATATC 59.787 45.833 0.00 0.00 0.00 1.63
5834 7076 5.703130 AGAGCTTGTTTCAATAGAAGGTGTC 59.297 40.000 0.00 0.00 34.71 3.67
5835 7077 5.471456 CAGAGCTTGTTTCAATAGAAGGTGT 59.529 40.000 0.00 0.00 34.71 4.16
5885 7127 6.208599 GGGAAAGTCAAAGTGATGGTTTATGA 59.791 38.462 0.00 0.00 0.00 2.15
5886 7128 6.389906 GGGAAAGTCAAAGTGATGGTTTATG 58.610 40.000 0.00 0.00 0.00 1.90
5887 7129 5.480422 GGGGAAAGTCAAAGTGATGGTTTAT 59.520 40.000 0.00 0.00 0.00 1.40
5888 7130 4.830600 GGGGAAAGTCAAAGTGATGGTTTA 59.169 41.667 0.00 0.00 0.00 2.01
5914 7156 9.009327 GGAAACAACAAACATATGATTATGACG 57.991 33.333 10.38 0.00 37.94 4.35
5927 7169 7.551585 ACAATGTGATAAGGAAACAACAAACA 58.448 30.769 0.00 0.00 0.00 2.83
5965 7207 3.382546 AGCAACTTCATGTTTGAGCACTT 59.617 39.130 8.15 0.00 36.63 3.16
6004 7246 9.378551 ACGAAGTCAAAATTCTATGTAGCATAA 57.621 29.630 0.00 0.00 29.74 1.90
6020 7262 3.058016 ACCGAGAACGATACGAAGTCAAA 60.058 43.478 0.00 0.00 41.83 2.69
6070 7312 5.230726 GCTTTCACAAGTCTCAACACAAATG 59.769 40.000 0.00 0.00 31.86 2.32
6080 7322 4.388469 GTCTGAGATGCTTTCACAAGTCTC 59.612 45.833 0.00 0.00 34.69 3.36
6160 7402 9.762933 AAAAACATGCATGAGTAACAAGTTATT 57.237 25.926 32.75 8.99 0.00 1.40
6203 7445 8.032451 GGGTGTATACTGCAATTTTGTTAACAT 58.968 33.333 9.56 0.00 0.00 2.71
6323 7565 3.507233 GTGCCCAAAAGATCAGTCATCAA 59.493 43.478 0.00 0.00 33.29 2.57
6620 7862 3.412386 AGCAGGGCTGTAAAAACACTAG 58.588 45.455 0.00 0.00 37.57 2.57
6646 7888 3.895656 AGAGTACAAGACACTGCTACCAA 59.104 43.478 0.00 0.00 0.00 3.67
6650 7892 3.671716 TCGAGAGTACAAGACACTGCTA 58.328 45.455 0.00 0.00 0.00 3.49
6667 7911 5.812642 ACTTTATGCACCTCAATAACTCGAG 59.187 40.000 11.84 11.84 0.00 4.04
6669 7913 5.580691 TCACTTTATGCACCTCAATAACTCG 59.419 40.000 0.00 0.00 0.00 4.18
6993 8237 8.506437 CAGTAGACTGCAAAGATACAATGAAAA 58.494 33.333 0.00 0.00 37.15 2.29
6997 8241 6.998338 GTCAGTAGACTGCAAAGATACAATG 58.002 40.000 4.72 0.00 43.46 2.82
7023 8270 5.678955 AAACATAGGTAGAGAAGTGTCCC 57.321 43.478 0.00 0.00 0.00 4.46
7039 8286 5.647225 TGATCAACAGCACTGCATAAACATA 59.353 36.000 3.30 0.00 0.00 2.29
7040 8287 4.460034 TGATCAACAGCACTGCATAAACAT 59.540 37.500 3.30 0.00 0.00 2.71
7106 8353 0.331278 CCATTGGAACTACAGGGCCA 59.669 55.000 6.18 0.00 0.00 5.36
7162 8409 7.928706 AGGTAGAGAAAGAAATATCATGGAACG 59.071 37.037 0.00 0.00 0.00 3.95
7214 8463 3.253188 TGATGTGTGCCTTTTAGCTGTTC 59.747 43.478 0.00 0.00 0.00 3.18
7247 8496 2.276732 AACTGTGACCCTGACCAATG 57.723 50.000 0.00 0.00 0.00 2.82
7311 8560 9.507280 CAAACCATATGAAGACAACATTATCAC 57.493 33.333 3.65 0.00 0.00 3.06
7313 8562 9.722056 GTCAAACCATATGAAGACAACATTATC 57.278 33.333 3.65 0.00 0.00 1.75
7415 8701 8.680903 CACCTTCTTGTGAAAGCATATTAAGAT 58.319 33.333 0.00 0.00 38.55 2.40
7542 8831 0.883833 CCGAACTTTCAGCTGCCAAT 59.116 50.000 9.47 0.00 0.00 3.16
7556 8845 6.596703 GGTTAGTCAATTCTACAAACCGAAC 58.403 40.000 0.00 0.00 0.00 3.95
7586 8875 7.100458 ACTTAAAACTGAATTTGACTGCACT 57.900 32.000 0.00 0.00 0.00 4.40
7612 8901 5.116069 TCTTTGGATTTTCAGTTAACCGC 57.884 39.130 0.88 0.00 0.00 5.68
7630 8919 2.578786 CCCTACACGGTGGTTTTCTTT 58.421 47.619 13.48 0.00 0.00 2.52
7651 8940 4.757149 GCCATGACTATTACTTGGCCTAAG 59.243 45.833 3.32 8.86 46.10 2.18
7684 8973 1.546923 TGCCAAAATGCATCTCACAGG 59.453 47.619 0.00 0.00 36.04 4.00
7723 9012 0.537828 TGATGTGTGTGGCTGCATGT 60.538 50.000 0.50 0.00 0.00 3.21
7763 9052 0.240945 GATGGCAGTGTTTGGTTCGG 59.759 55.000 0.00 0.00 0.00 4.30
7770 9059 1.067295 TGAGGGAGATGGCAGTGTTT 58.933 50.000 0.00 0.00 0.00 2.83
7774 9063 3.023949 GCGTGAGGGAGATGGCAGT 62.024 63.158 0.00 0.00 0.00 4.40
7794 9083 0.250814 TCCTAGGTCCTAGCGCTAGC 60.251 60.000 34.26 22.91 45.58 3.42
7795 9084 1.525941 GTCCTAGGTCCTAGCGCTAG 58.474 60.000 33.03 33.03 33.12 3.42
7796 9085 0.110104 GGTCCTAGGTCCTAGCGCTA 59.890 60.000 19.30 17.75 33.12 4.26
7797 9086 1.152715 GGTCCTAGGTCCTAGCGCT 60.153 63.158 19.30 17.26 33.12 5.92
7798 9087 1.455217 TGGTCCTAGGTCCTAGCGC 60.455 63.158 23.35 13.28 33.12 5.92
7849 9138 1.463018 GGGATCCCTCCATCAGCCT 60.463 63.158 24.69 0.00 44.08 4.58
7853 9142 1.771746 GCCAGGGATCCCTCCATCA 60.772 63.158 31.71 0.00 46.28 3.07
7878 9167 2.352422 GTCAGCAGTGGGGCATCA 59.648 61.111 0.00 0.00 35.83 3.07
7974 9294 5.175859 ACTGTTCCATTAACATAGTGGTCG 58.824 41.667 0.00 0.00 46.81 4.79
7991 9311 4.933400 TCGCTATTTGGTTAGGAACTGTTC 59.067 41.667 12.05 12.05 41.52 3.18
8035 9357 1.884579 AGTTGCATGAAGCCAACTCTG 59.115 47.619 9.77 0.00 44.83 3.35
8036 9358 1.884579 CAGTTGCATGAAGCCAACTCT 59.115 47.619 11.96 0.00 44.83 3.24
8044 9366 4.713824 ATCCACATTCAGTTGCATGAAG 57.286 40.909 8.59 4.18 42.20 3.02
8092 9414 1.480954 CCGACCAGCCTAACAGTACAT 59.519 52.381 0.00 0.00 0.00 2.29
8093 9415 0.892755 CCGACCAGCCTAACAGTACA 59.107 55.000 0.00 0.00 0.00 2.90
8110 9432 4.500396 GGCATGTCAATTTGGCCG 57.500 55.556 0.00 0.00 34.56 6.13
8155 9477 2.496899 AAATGTCCAGCCAGGTAGTG 57.503 50.000 0.00 0.00 39.02 2.74
8210 9600 9.048446 GTGAACAATAGTAGACCTGTAAAAACA 57.952 33.333 0.00 0.00 0.00 2.83
8254 9644 2.521126 CCAATACGGGGTTGTTCCTTT 58.479 47.619 0.00 0.00 36.25 3.11
8738 10128 0.743097 GCCCTGCTGATTGATGGAAC 59.257 55.000 0.00 0.00 0.00 3.62
8747 10137 1.379044 CCTTTTCGGCCCTGCTGAT 60.379 57.895 0.00 0.00 43.86 2.90
8934 10324 3.790437 CCAGCCGCACTCCAGGAT 61.790 66.667 0.00 0.00 0.00 3.24
8971 10362 1.062148 GCTTAATCCGCCACTTCGTTC 59.938 52.381 0.00 0.00 0.00 3.95
8987 10378 1.306296 GCATCCCCACCCAAGCTTA 59.694 57.895 0.00 0.00 0.00 3.09
9034 10430 3.057386 CAGCACACATAAGCATCAAACCA 60.057 43.478 0.00 0.00 0.00 3.67
9093 10489 2.361610 AACAAGCTGATGGCCCGG 60.362 61.111 0.00 0.00 43.05 5.73
9219 10615 2.289565 CGGGTTAGCATTCCTTCCTTC 58.710 52.381 0.00 0.00 0.00 3.46
9306 10704 1.024271 TCACCTGCAGCAAAAGTGTC 58.976 50.000 8.66 0.00 0.00 3.67
9546 11163 1.675310 CCATGCCCTTGTGAAGCGA 60.675 57.895 0.00 0.00 0.00 4.93
9598 11215 2.358939 GGCATTTTTCAGAGCCACAG 57.641 50.000 0.00 0.00 46.26 3.66
9604 11221 4.589216 TTTCCAGTGGCATTTTTCAGAG 57.411 40.909 3.51 0.00 0.00 3.35
9605 11222 4.262549 CCATTTCCAGTGGCATTTTTCAGA 60.263 41.667 3.51 0.00 0.00 3.27
9606 11223 3.998341 CCATTTCCAGTGGCATTTTTCAG 59.002 43.478 3.51 0.00 0.00 3.02
9622 11240 6.264088 TGCAAACTTTGAAAAATGCCATTTC 58.736 32.000 2.61 0.00 37.31 2.17
9656 11274 0.734942 TGACGATTCCGAGAAACGCC 60.735 55.000 13.36 6.12 41.07 5.68
9659 11277 4.625742 TGAATTCTGACGATTCCGAGAAAC 59.374 41.667 7.05 0.00 39.50 2.78
9660 11278 4.816392 TGAATTCTGACGATTCCGAGAAA 58.184 39.130 7.05 0.00 39.50 2.52
9665 11283 3.926527 TCACTTGAATTCTGACGATTCCG 59.073 43.478 7.05 0.00 42.50 4.30
9708 11326 9.561270 GCCTCACTGTTATTATTTCTTTCTTTC 57.439 33.333 0.00 0.00 0.00 2.62
9750 11368 0.459899 TGGAGTATGTGTGCGGCTAG 59.540 55.000 0.00 0.00 0.00 3.42
9777 11402 0.108186 CTGGAATAGCGCCTGACACA 60.108 55.000 2.29 0.00 0.00 3.72
9782 11407 5.499139 TTTTATTTCTGGAATAGCGCCTG 57.501 39.130 2.29 0.00 32.06 4.85
9783 11408 5.010012 CCATTTTATTTCTGGAATAGCGCCT 59.990 40.000 2.29 0.00 32.06 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.