Multiple sequence alignment - TraesCS3A01G227900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G227900 chr3A 100.000 6668 0 0 1 6668 426857580 426864247 0.000000e+00 12314.0
1 TraesCS3A01G227900 chr3A 91.729 133 10 1 3978 4110 275291890 275292021 4.110000e-42 183.0
2 TraesCS3A01G227900 chr3A 96.907 97 3 0 5872 5968 708110247 708110151 5.350000e-36 163.0
3 TraesCS3A01G227900 chr3A 91.837 98 8 0 6211 6308 511994147 511994244 3.240000e-28 137.0
4 TraesCS3A01G227900 chr3D 94.350 1770 61 14 1 1755 307240084 307238339 0.000000e+00 2678.0
5 TraesCS3A01G227900 chr3D 93.586 1450 49 16 4447 5884 307235547 307234130 0.000000e+00 2122.0
6 TraesCS3A01G227900 chr3D 91.350 1422 76 10 2985 4396 307237064 307235680 0.000000e+00 1901.0
7 TraesCS3A01G227900 chr3D 91.003 1156 68 15 1850 2981 307238358 307237215 0.000000e+00 1526.0
8 TraesCS3A01G227900 chr3D 95.238 546 23 2 5967 6511 307234131 307233588 0.000000e+00 861.0
9 TraesCS3A01G227900 chr3D 97.710 131 3 0 6538 6668 307233587 307233457 6.730000e-55 226.0
10 TraesCS3A01G227900 chr3D 90.184 163 10 3 3836 3992 210621184 210621022 2.440000e-49 207.0
11 TraesCS3A01G227900 chr3D 90.977 133 11 1 3978 4110 210621008 210620877 1.910000e-40 178.0
12 TraesCS3A01G227900 chr3B 95.190 1684 49 13 1 1664 414013136 414014807 0.000000e+00 2632.0
13 TraesCS3A01G227900 chr3B 90.540 1427 86 19 2985 4396 414016189 414017581 0.000000e+00 1842.0
14 TraesCS3A01G227900 chr3B 90.584 1147 66 24 1850 2981 414014908 414016027 0.000000e+00 1482.0
15 TraesCS3A01G227900 chr3B 93.325 764 19 14 5121 5884 414018433 414019164 0.000000e+00 1099.0
16 TraesCS3A01G227900 chr3B 96.651 657 19 3 4446 5100 414017725 414018380 0.000000e+00 1088.0
17 TraesCS3A01G227900 chr3B 89.370 254 15 4 5967 6209 414019163 414019415 6.490000e-80 309.0
18 TraesCS3A01G227900 chr3B 93.407 182 11 1 6487 6668 414019840 414020020 1.100000e-67 268.0
19 TraesCS3A01G227900 chr3B 95.031 161 8 0 6336 6496 414019469 414019629 3.090000e-63 254.0
20 TraesCS3A01G227900 chr3B 88.344 163 13 3 3836 3992 332929585 332929423 2.450000e-44 191.0
21 TraesCS3A01G227900 chr3B 90.977 133 11 1 3978 4110 332929409 332929278 1.910000e-40 178.0
22 TraesCS3A01G227900 chr3B 93.396 106 6 1 5876 5980 581135784 581135889 8.950000e-34 156.0
23 TraesCS3A01G227900 chr3B 93.269 104 6 1 5866 5969 822717695 822717593 1.160000e-32 152.0
24 TraesCS3A01G227900 chr3B 89.381 113 9 1 1643 1755 414014818 414014927 9.020000e-29 139.0
25 TraesCS3A01G227900 chr7B 96.939 98 1 2 5883 5980 745001703 745001608 5.350000e-36 163.0
26 TraesCS3A01G227900 chr7B 93.396 106 3 3 5876 5978 456917815 456917919 3.220000e-33 154.0
27 TraesCS3A01G227900 chr2A 98.913 92 0 1 5883 5973 10217376 10217467 5.350000e-36 163.0
28 TraesCS3A01G227900 chr2A 95.918 98 4 0 5881 5978 18339607 18339510 6.920000e-35 159.0
29 TraesCS3A01G227900 chr2A 91.176 102 9 0 6213 6314 575605542 575605441 9.020000e-29 139.0
30 TraesCS3A01G227900 chr5B 97.849 93 2 0 5878 5970 588164711 588164619 1.920000e-35 161.0
31 TraesCS3A01G227900 chr6B 94.949 99 5 0 6213 6311 422320837 422320935 8.950000e-34 156.0
32 TraesCS3A01G227900 chr6B 94.949 99 5 0 5876 5974 481942980 481942882 8.950000e-34 156.0
33 TraesCS3A01G227900 chr6D 94.898 98 5 0 6214 6311 269701497 269701594 3.220000e-33 154.0
34 TraesCS3A01G227900 chr7A 93.069 101 7 0 6211 6311 115257865 115257965 1.500000e-31 148.0
35 TraesCS3A01G227900 chr6A 93.878 98 6 0 6214 6311 383964326 383964423 1.500000e-31 148.0
36 TraesCS3A01G227900 chr4B 92.857 98 7 0 6214 6311 450474530 450474627 6.970000e-30 143.0
37 TraesCS3A01G227900 chr1B 83.234 167 16 6 5133 5293 67443846 67444006 6.970000e-30 143.0
38 TraesCS3A01G227900 chr1B 92.857 98 7 0 6214 6311 665275982 665276079 6.970000e-30 143.0
39 TraesCS3A01G227900 chr1A 82.036 167 18 6 5133 5293 47581484 47581644 1.510000e-26 132.0
40 TraesCS3A01G227900 chr1A 82.653 98 16 1 3064 3161 536442615 536442711 1.190000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G227900 chr3A 426857580 426864247 6667 False 12314.000000 12314 100.000000 1 6668 1 chr3A.!!$F2 6667
1 TraesCS3A01G227900 chr3D 307233457 307240084 6627 True 1552.333333 2678 93.872833 1 6668 6 chr3D.!!$R2 6667
2 TraesCS3A01G227900 chr3B 414013136 414020020 6884 False 1012.555556 2632 92.608778 1 6668 9 chr3B.!!$F2 6667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 857 1.072505 TCGGGGTCAAACTTGAGGC 59.927 57.895 0.00 0.0 37.98 4.70 F
1579 1607 0.460311 CTGGGGTCAACGCTAGTAGG 59.540 60.000 0.00 0.0 33.73 3.18 F
1795 1863 0.029300 CGAAAACTGCCAGTGTGGTG 59.971 55.000 0.00 0.0 40.46 4.17 F
2447 2532 1.135489 CGCTCTACTGCCGAAGTGTTA 60.135 52.381 1.42 0.0 40.26 2.41 F
3118 3372 1.469767 GGAAATCAAGAATGCGGTGGC 60.470 52.381 0.00 0.0 40.52 5.01 F
4078 4347 0.171455 GCTCTGGTCGACCACAGTAG 59.829 60.000 32.17 25.6 42.01 2.57 F
4842 5206 0.478072 TCATGTGACACAAAGGCCCT 59.522 50.000 13.23 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 1844 0.029300 CACCACACTGGCAGTTTTCG 59.971 55.000 19.43 9.4 42.67 3.46 R
2813 2908 1.152525 GGCAGGGGTCCTAGATCGA 60.153 63.158 0.00 0.0 29.64 3.59 R
2862 2957 4.214758 GCTACAAGATGTAAAACCAACCGT 59.785 41.667 0.00 0.0 31.67 4.83 R
3985 4254 1.153549 GGCCGCTCTACCAAGTCAG 60.154 63.158 0.00 0.0 0.00 3.51 R
4823 5187 0.478072 AGGGCCTTTGTGTCACATGA 59.522 50.000 6.48 0.0 0.00 3.07 R
5610 6019 0.813184 TTAGTGGCCTTACGTCCTCG 59.187 55.000 3.32 0.0 43.34 4.63 R
6121 6534 0.108186 TGTGTCAGGCGCTATTCCAG 60.108 55.000 7.64 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 2.956987 CGGGTACGACACGGACTT 59.043 61.111 6.48 0.00 42.19 3.01
101 102 1.219522 CGACACGGACTTGGTGGTTC 61.220 60.000 0.00 0.00 39.69 3.62
198 199 3.722813 CGTGTACCCATGGGCCCA 61.723 66.667 31.73 30.92 39.32 5.36
262 263 3.372730 CACATGGGCCCCAACGTG 61.373 66.667 22.27 18.25 36.95 4.49
294 295 1.079336 GTCAGGGAGTACGGCCAAC 60.079 63.158 2.24 0.00 0.00 3.77
361 362 2.183300 CCCCGAAATCGCGAGACA 59.817 61.111 16.66 0.00 46.97 3.41
376 377 1.810755 GAGACAAACCCGAAACCATCC 59.189 52.381 0.00 0.00 0.00 3.51
389 390 2.801631 CCATCCTCTCTGGGTCGCC 61.802 68.421 0.00 0.00 36.20 5.54
772 796 1.791555 CGTGTGATTGCTGCGGATTTC 60.792 52.381 0.00 0.00 0.00 2.17
833 857 1.072505 TCGGGGTCAAACTTGAGGC 59.927 57.895 0.00 0.00 37.98 4.70
961 987 3.684305 TCAAGCTTCGGTGTGATTACATG 59.316 43.478 0.00 0.00 39.39 3.21
975 1001 2.073252 TACATGTCTCCTGCTCCGAT 57.927 50.000 0.00 0.00 0.00 4.18
1090 1116 3.644966 TGCGAGGTGGGATTAAATCTT 57.355 42.857 0.00 0.00 0.00 2.40
1120 1146 2.317530 AGTTTATCGGAGGCTGCTTC 57.682 50.000 4.02 2.75 0.00 3.86
1187 1213 8.228035 TCTAAATAGTCTTCAGCTAGAGAACC 57.772 38.462 0.00 0.00 0.00 3.62
1411 1439 2.841442 ACTGGACCTGCAGTACTTTC 57.159 50.000 13.81 0.69 0.00 2.62
1505 1533 5.940470 GGAGTTTCATACATTCCACAAGACT 59.060 40.000 0.00 0.00 0.00 3.24
1554 1582 3.686241 TCAAGAGATTGCATTCCACGAAG 59.314 43.478 5.00 0.00 0.00 3.79
1579 1607 0.460311 CTGGGGTCAACGCTAGTAGG 59.540 60.000 0.00 0.00 33.73 3.18
1580 1608 1.143401 GGGGTCAACGCTAGTAGGC 59.857 63.158 0.00 0.00 0.00 3.93
1602 1630 5.389859 CCATCAAAATGGTAAAGTCTGCA 57.610 39.130 0.00 0.00 46.43 4.41
1605 1633 7.198390 CCATCAAAATGGTAAAGTCTGCATAG 58.802 38.462 0.00 0.00 46.43 2.23
1617 1645 6.436843 AAGTCTGCATAGTTTTAATTCCGG 57.563 37.500 0.00 0.00 0.00 5.14
1647 1675 7.282450 ACTTGGTTAGACTCGTTTTGATCTTTT 59.718 33.333 0.00 0.00 0.00 2.27
1648 1676 7.562454 TGGTTAGACTCGTTTTGATCTTTTT 57.438 32.000 0.00 0.00 0.00 1.94
1649 1677 7.636326 TGGTTAGACTCGTTTTGATCTTTTTC 58.364 34.615 0.00 0.00 0.00 2.29
1650 1678 7.497909 TGGTTAGACTCGTTTTGATCTTTTTCT 59.502 33.333 0.00 0.00 0.00 2.52
1651 1679 8.343366 GGTTAGACTCGTTTTGATCTTTTTCTT 58.657 33.333 0.00 0.00 0.00 2.52
1652 1680 9.717892 GTTAGACTCGTTTTGATCTTTTTCTTT 57.282 29.630 0.00 0.00 0.00 2.52
1653 1681 9.931210 TTAGACTCGTTTTGATCTTTTTCTTTC 57.069 29.630 0.00 0.00 0.00 2.62
1724 1792 2.869192 GTGGCTGCATTAGAGAAGTAGC 59.131 50.000 0.50 0.00 0.00 3.58
1735 1803 6.570672 TTAGAGAAGTAGCGACTCTTTCAA 57.429 37.500 0.00 0.00 40.70 2.69
1736 1804 5.455056 AGAGAAGTAGCGACTCTTTCAAA 57.545 39.130 0.00 0.00 37.69 2.69
1737 1805 5.844004 AGAGAAGTAGCGACTCTTTCAAAA 58.156 37.500 0.00 0.00 37.69 2.44
1738 1806 5.692654 AGAGAAGTAGCGACTCTTTCAAAAC 59.307 40.000 0.00 0.00 37.69 2.43
1739 1807 5.357257 AGAAGTAGCGACTCTTTCAAAACA 58.643 37.500 0.00 0.00 33.58 2.83
1740 1808 5.992217 AGAAGTAGCGACTCTTTCAAAACAT 59.008 36.000 0.00 0.00 33.58 2.71
1741 1809 7.152645 AGAAGTAGCGACTCTTTCAAAACATA 58.847 34.615 0.00 0.00 33.58 2.29
1742 1810 6.707599 AGTAGCGACTCTTTCAAAACATAC 57.292 37.500 0.00 0.00 0.00 2.39
1743 1811 6.220930 AGTAGCGACTCTTTCAAAACATACA 58.779 36.000 0.00 0.00 0.00 2.29
1744 1812 5.344207 AGCGACTCTTTCAAAACATACAC 57.656 39.130 0.00 0.00 0.00 2.90
1745 1813 5.057149 AGCGACTCTTTCAAAACATACACT 58.943 37.500 0.00 0.00 0.00 3.55
1746 1814 5.177696 AGCGACTCTTTCAAAACATACACTC 59.822 40.000 0.00 0.00 0.00 3.51
1747 1815 5.614887 GCGACTCTTTCAAAACATACACTCC 60.615 44.000 0.00 0.00 0.00 3.85
1748 1816 5.107065 CGACTCTTTCAAAACATACACTCCC 60.107 44.000 0.00 0.00 0.00 4.30
1749 1817 5.941788 ACTCTTTCAAAACATACACTCCCT 58.058 37.500 0.00 0.00 0.00 4.20
1750 1818 6.365520 ACTCTTTCAAAACATACACTCCCTT 58.634 36.000 0.00 0.00 0.00 3.95
1751 1819 6.263168 ACTCTTTCAAAACATACACTCCCTTG 59.737 38.462 0.00 0.00 0.00 3.61
1752 1820 6.361433 TCTTTCAAAACATACACTCCCTTGA 58.639 36.000 0.00 0.00 0.00 3.02
1753 1821 6.831353 TCTTTCAAAACATACACTCCCTTGAA 59.169 34.615 0.00 0.00 31.41 2.69
1754 1822 7.505585 TCTTTCAAAACATACACTCCCTTGAAT 59.494 33.333 0.00 0.00 32.93 2.57
1755 1823 6.573664 TCAAAACATACACTCCCTTGAATG 57.426 37.500 0.00 0.00 0.00 2.67
1756 1824 5.048083 TCAAAACATACACTCCCTTGAATGC 60.048 40.000 0.00 0.00 0.00 3.56
1757 1825 3.719268 ACATACACTCCCTTGAATGCA 57.281 42.857 0.00 0.00 0.00 3.96
1758 1826 3.614092 ACATACACTCCCTTGAATGCAG 58.386 45.455 0.00 0.00 0.00 4.41
1759 1827 3.264193 ACATACACTCCCTTGAATGCAGA 59.736 43.478 0.00 0.00 0.00 4.26
1760 1828 2.486472 ACACTCCCTTGAATGCAGAG 57.514 50.000 0.00 0.00 0.00 3.35
1761 1829 1.701847 ACACTCCCTTGAATGCAGAGT 59.298 47.619 0.00 0.00 38.30 3.24
1762 1830 2.289945 ACACTCCCTTGAATGCAGAGTC 60.290 50.000 0.00 0.00 35.67 3.36
1763 1831 1.980765 ACTCCCTTGAATGCAGAGTCA 59.019 47.619 0.00 0.00 32.42 3.41
1764 1832 2.575279 ACTCCCTTGAATGCAGAGTCAT 59.425 45.455 0.00 0.00 32.42 3.06
1765 1833 3.204526 CTCCCTTGAATGCAGAGTCATC 58.795 50.000 0.00 0.00 0.00 2.92
1766 1834 1.938577 CCCTTGAATGCAGAGTCATCG 59.061 52.381 0.00 0.00 0.00 3.84
1767 1835 1.938577 CCTTGAATGCAGAGTCATCGG 59.061 52.381 0.00 0.00 0.00 4.18
1768 1836 2.625737 CTTGAATGCAGAGTCATCGGT 58.374 47.619 0.00 0.00 0.00 4.69
1769 1837 2.768253 TGAATGCAGAGTCATCGGTT 57.232 45.000 0.00 0.00 0.00 4.44
1770 1838 2.621338 TGAATGCAGAGTCATCGGTTC 58.379 47.619 0.00 0.00 0.00 3.62
1771 1839 2.234661 TGAATGCAGAGTCATCGGTTCT 59.765 45.455 0.00 0.00 0.00 3.01
1772 1840 3.447229 TGAATGCAGAGTCATCGGTTCTA 59.553 43.478 0.00 0.00 0.00 2.10
1773 1841 3.724508 ATGCAGAGTCATCGGTTCTAG 57.275 47.619 0.00 0.00 0.00 2.43
1774 1842 2.447443 TGCAGAGTCATCGGTTCTAGT 58.553 47.619 0.00 0.00 0.00 2.57
1775 1843 3.617284 TGCAGAGTCATCGGTTCTAGTA 58.383 45.455 0.00 0.00 0.00 1.82
1776 1844 3.377485 TGCAGAGTCATCGGTTCTAGTAC 59.623 47.826 0.00 0.00 0.00 2.73
1777 1845 3.546417 GCAGAGTCATCGGTTCTAGTACG 60.546 52.174 0.00 0.00 0.00 3.67
1778 1846 3.869832 CAGAGTCATCGGTTCTAGTACGA 59.130 47.826 8.18 8.18 41.20 3.43
1779 1847 4.331992 CAGAGTCATCGGTTCTAGTACGAA 59.668 45.833 9.42 0.00 40.27 3.85
1780 1848 4.940046 AGAGTCATCGGTTCTAGTACGAAA 59.060 41.667 9.42 1.11 40.27 3.46
1781 1849 5.413833 AGAGTCATCGGTTCTAGTACGAAAA 59.586 40.000 9.42 0.84 40.27 2.29
1782 1850 5.397326 AGTCATCGGTTCTAGTACGAAAAC 58.603 41.667 9.42 10.02 40.27 2.43
1783 1851 5.182760 AGTCATCGGTTCTAGTACGAAAACT 59.817 40.000 9.42 11.51 40.27 2.66
1784 1852 5.285607 GTCATCGGTTCTAGTACGAAAACTG 59.714 44.000 9.42 8.82 40.27 3.16
1785 1853 3.568538 TCGGTTCTAGTACGAAAACTGC 58.431 45.455 9.79 0.00 33.21 4.40
1786 1854 2.665052 CGGTTCTAGTACGAAAACTGCC 59.335 50.000 0.00 0.00 0.00 4.85
1787 1855 3.656559 GGTTCTAGTACGAAAACTGCCA 58.343 45.455 0.00 0.00 0.00 4.92
1788 1856 3.678548 GGTTCTAGTACGAAAACTGCCAG 59.321 47.826 0.00 0.00 0.00 4.85
1789 1857 4.304939 GTTCTAGTACGAAAACTGCCAGT 58.695 43.478 0.00 0.00 0.00 4.00
1790 1858 3.909430 TCTAGTACGAAAACTGCCAGTG 58.091 45.455 0.00 0.00 0.00 3.66
1791 1859 2.614829 AGTACGAAAACTGCCAGTGT 57.385 45.000 0.00 0.00 0.00 3.55
1792 1860 2.210116 AGTACGAAAACTGCCAGTGTG 58.790 47.619 0.00 0.00 0.00 3.82
1793 1861 1.263217 GTACGAAAACTGCCAGTGTGG 59.737 52.381 0.00 0.00 41.55 4.17
1794 1862 0.393808 ACGAAAACTGCCAGTGTGGT 60.394 50.000 0.00 0.00 40.46 4.16
1795 1863 0.029300 CGAAAACTGCCAGTGTGGTG 59.971 55.000 0.00 0.00 40.46 4.17
1796 1864 1.388547 GAAAACTGCCAGTGTGGTGA 58.611 50.000 0.00 0.00 40.46 4.02
1797 1865 1.956477 GAAAACTGCCAGTGTGGTGAT 59.044 47.619 0.00 0.00 40.46 3.06
1798 1866 2.071778 AAACTGCCAGTGTGGTGATT 57.928 45.000 0.00 0.00 40.46 2.57
1799 1867 2.071778 AACTGCCAGTGTGGTGATTT 57.928 45.000 0.00 0.00 40.46 2.17
1800 1868 2.071778 ACTGCCAGTGTGGTGATTTT 57.928 45.000 0.00 0.00 40.46 1.82
1801 1869 2.387757 ACTGCCAGTGTGGTGATTTTT 58.612 42.857 0.00 0.00 40.46 1.94
1802 1870 3.561143 ACTGCCAGTGTGGTGATTTTTA 58.439 40.909 0.00 0.00 40.46 1.52
1803 1871 3.317993 ACTGCCAGTGTGGTGATTTTTAC 59.682 43.478 0.00 0.00 40.46 2.01
1804 1872 3.291584 TGCCAGTGTGGTGATTTTTACA 58.708 40.909 0.00 0.00 40.46 2.41
1805 1873 3.067461 TGCCAGTGTGGTGATTTTTACAC 59.933 43.478 0.00 0.00 40.46 2.90
1806 1874 3.067461 GCCAGTGTGGTGATTTTTACACA 59.933 43.478 8.77 0.00 44.30 3.72
1807 1875 4.440802 GCCAGTGTGGTGATTTTTACACAA 60.441 41.667 8.77 0.00 44.41 3.33
1808 1876 5.738783 GCCAGTGTGGTGATTTTTACACAAT 60.739 40.000 8.77 0.00 44.41 2.71
1809 1877 6.515862 GCCAGTGTGGTGATTTTTACACAATA 60.516 38.462 8.77 0.00 44.41 1.90
1810 1878 7.429633 CCAGTGTGGTGATTTTTACACAATAA 58.570 34.615 8.77 0.00 44.41 1.40
1811 1879 8.087750 CCAGTGTGGTGATTTTTACACAATAAT 58.912 33.333 8.77 0.00 44.41 1.28
1812 1880 9.474920 CAGTGTGGTGATTTTTACACAATAATT 57.525 29.630 8.77 0.00 44.41 1.40
1813 1881 9.691362 AGTGTGGTGATTTTTACACAATAATTC 57.309 29.630 8.77 0.00 44.41 2.17
1814 1882 9.691362 GTGTGGTGATTTTTACACAATAATTCT 57.309 29.630 0.00 0.00 44.41 2.40
1840 1908 9.702494 TTCATGTTATGAATTACATTGCACAAA 57.298 25.926 0.36 0.00 43.84 2.83
1841 1909 9.872721 TCATGTTATGAATTACATTGCACAAAT 57.127 25.926 0.00 0.00 40.07 2.32
2147 2230 6.348540 CCAAGTCTATGTAACAAACCTTCTGC 60.349 42.308 0.00 0.00 0.00 4.26
2153 2236 5.243426 TGTAACAAACCTTCTGCAGAAAC 57.757 39.130 28.16 20.39 33.07 2.78
2210 2293 2.420642 TGTGTGCTGAGCTCAAAGATC 58.579 47.619 18.85 9.09 33.88 2.75
2229 2312 9.964253 CAAAGATCAGAATGTTCATATATACGC 57.036 33.333 0.00 0.00 37.28 4.42
2231 2314 7.840931 AGATCAGAATGTTCATATATACGCCA 58.159 34.615 0.00 0.00 37.28 5.69
2280 2363 8.347035 TCAAATTTACCTTCTGTTTTAGAACGG 58.653 33.333 0.00 0.00 40.43 4.44
2328 2411 6.882610 TCAACTTTGGGATATGCATATGAC 57.117 37.500 23.76 15.45 0.00 3.06
2336 2419 8.487313 TTGGGATATGCATATGACGTTATTAC 57.513 34.615 23.76 5.19 0.00 1.89
2380 2464 6.358974 TGGATGTATGTTCTCTCAAAGACA 57.641 37.500 0.00 0.00 32.27 3.41
2381 2465 6.401394 TGGATGTATGTTCTCTCAAAGACAG 58.599 40.000 0.00 0.00 32.27 3.51
2391 2475 4.125703 CTCTCAAAGACAGCAGTGAGTTT 58.874 43.478 0.00 0.00 38.87 2.66
2447 2532 1.135489 CGCTCTACTGCCGAAGTGTTA 60.135 52.381 1.42 0.00 40.26 2.41
2483 2568 7.944729 ATTATTTGTTTGCAGTCCACTCTAT 57.055 32.000 0.00 0.00 0.00 1.98
2589 2674 2.816087 GCCAGTGTCATTCTTGTCATGT 59.184 45.455 0.00 0.00 0.00 3.21
2590 2675 3.365666 GCCAGTGTCATTCTTGTCATGTG 60.366 47.826 0.00 0.00 0.00 3.21
2596 2681 3.686726 GTCATTCTTGTCATGTGGTCCTC 59.313 47.826 0.00 0.00 0.00 3.71
2613 2698 5.010719 TGGTCCTCGATCTATGGTGATTAAC 59.989 44.000 0.00 0.00 0.00 2.01
2683 2770 6.274157 TCTGTTTCTGGTCTCTGATAAGAC 57.726 41.667 0.00 0.00 44.08 3.01
2691 2778 5.724328 TGGTCTCTGATAAGACAATCACAC 58.276 41.667 6.40 0.00 46.15 3.82
2723 2811 7.785033 ACTTATCATCATTTGGTTGATTTCCC 58.215 34.615 0.00 0.00 34.09 3.97
2762 2857 7.315890 GCAACTGCTTAGGTTCATATCTTTTT 58.684 34.615 0.00 0.00 38.21 1.94
2775 2870 9.599322 GTTCATATCTTTTTGATATTGCGTAGG 57.401 33.333 0.00 0.00 43.71 3.18
2799 2894 2.715749 TATCTGGCATTGTGGTCCTG 57.284 50.000 0.00 0.00 0.00 3.86
2813 2908 5.197451 TGTGGTCCTGTTGAAAAAGTATGT 58.803 37.500 0.00 0.00 0.00 2.29
2827 2922 3.157750 AGTATGTCGATCTAGGACCCC 57.842 52.381 0.00 0.00 33.46 4.95
2851 2946 4.199310 GCCAGTTGTAAGGATTATCAGCA 58.801 43.478 0.00 0.00 30.46 4.41
2856 2951 8.902806 CCAGTTGTAAGGATTATCAGCAAATTA 58.097 33.333 0.00 0.00 30.46 1.40
2862 2957 7.716799 AAGGATTATCAGCAAATTACCACAA 57.283 32.000 0.00 0.00 0.00 3.33
2886 2981 4.454504 CGGTTGGTTTTACATCTTGTAGCT 59.545 41.667 0.00 0.00 33.92 3.32
2954 3049 8.202745 ACTTTGGAATTAGATGAATCTTCGTC 57.797 34.615 0.00 4.32 42.24 4.20
2965 3060 8.480643 AGATGAATCTTCGTCGTTCTTTTTAT 57.519 30.769 6.52 0.00 45.57 1.40
3031 3284 9.809096 ATAGTCATCACTAAATACACTTGTCAG 57.191 33.333 0.00 0.00 38.66 3.51
3034 3287 8.988934 GTCATCACTAAATACACTTGTCAGAAA 58.011 33.333 0.00 0.00 0.00 2.52
3112 3366 6.397272 TGTTACATTGGGAAATCAAGAATGC 58.603 36.000 0.00 0.00 0.00 3.56
3115 3369 2.214376 TGGGAAATCAAGAATGCGGT 57.786 45.000 0.00 0.00 0.00 5.68
3118 3372 1.469767 GGAAATCAAGAATGCGGTGGC 60.470 52.381 0.00 0.00 40.52 5.01
3119 3373 1.474077 GAAATCAAGAATGCGGTGGCT 59.526 47.619 0.00 0.00 40.82 4.75
3124 3378 2.887783 TCAAGAATGCGGTGGCTTAAAA 59.112 40.909 0.00 0.00 40.82 1.52
3133 3387 5.059833 TGCGGTGGCTTAAAATTTTCAAAT 58.940 33.333 6.72 0.00 40.82 2.32
3187 3441 6.445786 AGGAACTATAAACCTGTAACATGGGA 59.554 38.462 0.00 0.00 36.02 4.37
3283 3540 3.384789 TCTGCAATCCGCTTAGACACTAT 59.615 43.478 0.00 0.00 43.06 2.12
3308 3565 8.123639 TGAGCTATCTCAGTTTAAGTTACTGT 57.876 34.615 5.84 0.00 43.95 3.55
3309 3566 9.239551 TGAGCTATCTCAGTTTAAGTTACTGTA 57.760 33.333 5.84 0.00 43.95 2.74
3310 3567 9.505995 GAGCTATCTCAGTTTAAGTTACTGTAC 57.494 37.037 5.84 0.00 42.77 2.90
3311 3568 9.245481 AGCTATCTCAGTTTAAGTTACTGTACT 57.755 33.333 5.84 0.00 42.77 2.73
3339 3596 8.486210 AGACAATGATTATCAGCTACCTTTGTA 58.514 33.333 7.72 0.00 0.00 2.41
3351 3608 9.344772 TCAGCTACCTTTGTAAAAATCTAACAA 57.655 29.630 0.00 0.00 0.00 2.83
3379 3636 8.070171 ACGATTCCATCTTTGCTTTATTTATCG 58.930 33.333 0.00 0.00 35.92 2.92
3396 3653 9.645059 TTATTTATCGATTTCATCTGCCTAGAG 57.355 33.333 1.71 0.00 36.14 2.43
3397 3654 6.901081 TTATCGATTTCATCTGCCTAGAGA 57.099 37.500 1.71 0.00 36.14 3.10
3398 3655 5.999205 ATCGATTTCATCTGCCTAGAGAT 57.001 39.130 0.00 0.00 36.14 2.75
3424 3682 8.480643 ACTGCTACTTATGTCAAGTTATGAAC 57.519 34.615 0.00 0.00 40.50 3.18
3503 3761 2.358957 CGTCATCATCTGGCCTTGAAA 58.641 47.619 3.32 0.00 0.00 2.69
3536 3794 7.432148 ACACCTAATCCAATGTACAGTGATA 57.568 36.000 24.07 12.19 0.00 2.15
3550 3808 9.896645 ATGTACAGTGATATTCAGTTGAAAGAT 57.103 29.630 0.33 0.00 37.61 2.40
3580 3841 4.398319 ACAATGCTACAGGTAATATGGCC 58.602 43.478 0.00 0.00 0.00 5.36
3609 3870 7.706607 ACTTTCAACTCTTCCAATGTTTTAAGC 59.293 33.333 0.00 0.00 0.00 3.09
3709 3975 9.622004 TCAAGTATATACGTATTTAGCTGCTTC 57.378 33.333 14.33 0.00 0.00 3.86
3727 3993 6.266131 TGCTTCCCTTTATCATGTTATCCT 57.734 37.500 0.00 0.00 0.00 3.24
3766 4032 5.612725 TGTGGTATCTGAATGTGCTGATA 57.387 39.130 0.00 0.00 0.00 2.15
3775 4041 6.053650 TCTGAATGTGCTGATATTCTCCTTG 58.946 40.000 0.00 0.00 35.02 3.61
3855 4121 5.300286 GGCAATGATGAAGGCTACAATACTT 59.700 40.000 0.00 0.00 0.00 2.24
3866 4132 5.105473 AGGCTACAATACTTCAAGCGAACTA 60.105 40.000 0.00 0.00 33.96 2.24
4050 4319 4.946157 AGACAGAGGAACCAAATAATGCAG 59.054 41.667 0.00 0.00 0.00 4.41
4070 4339 1.941325 CCAATAAGGCTCTGGTCGAC 58.059 55.000 7.13 7.13 0.00 4.20
4078 4347 0.171455 GCTCTGGTCGACCACAGTAG 59.829 60.000 32.17 25.60 42.01 2.57
4088 4357 1.906574 GACCACAGTAGAATGGACCCA 59.093 52.381 0.00 0.00 39.46 4.51
4135 4404 6.923199 AATGAAACCACCAGATTCAGAAAT 57.077 33.333 0.00 0.00 36.59 2.17
4181 4450 7.601886 CAGGATGTGATAGGAATTGAGTATGTC 59.398 40.741 0.00 0.00 0.00 3.06
4183 4452 6.709018 TGTGATAGGAATTGAGTATGTCGA 57.291 37.500 0.00 0.00 0.00 4.20
4184 4453 7.290110 TGTGATAGGAATTGAGTATGTCGAT 57.710 36.000 0.00 0.00 0.00 3.59
4185 4454 7.726216 TGTGATAGGAATTGAGTATGTCGATT 58.274 34.615 0.00 0.00 41.42 3.34
4195 4464 8.824159 ATTGAGTATGTCGATTCAATTCCTAG 57.176 34.615 0.00 0.00 37.04 3.02
4196 4465 7.582667 TGAGTATGTCGATTCAATTCCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
4197 4466 7.652727 TGAGTATGTCGATTCAATTCCTAGAG 58.347 38.462 0.00 0.00 0.00 2.43
4198 4467 6.987386 AGTATGTCGATTCAATTCCTAGAGG 58.013 40.000 0.00 0.00 0.00 3.69
4199 4468 5.878406 ATGTCGATTCAATTCCTAGAGGT 57.122 39.130 0.00 0.00 36.34 3.85
4200 4469 5.263968 TGTCGATTCAATTCCTAGAGGTC 57.736 43.478 0.00 0.00 36.34 3.85
4201 4470 4.956700 TGTCGATTCAATTCCTAGAGGTCT 59.043 41.667 0.00 0.00 36.34 3.85
4202 4471 6.127101 TGTCGATTCAATTCCTAGAGGTCTA 58.873 40.000 0.00 0.00 36.34 2.59
4203 4472 6.039493 TGTCGATTCAATTCCTAGAGGTCTAC 59.961 42.308 0.00 0.00 36.34 2.59
4204 4473 5.535406 TCGATTCAATTCCTAGAGGTCTACC 59.465 44.000 0.00 0.00 36.34 3.18
4271 4540 5.592054 GATGTTGACTCATCCAATCGTCTA 58.408 41.667 0.00 0.00 38.47 2.59
4292 4561 2.800544 ACGAAAATCACCAGTGAGAACG 59.199 45.455 6.63 10.94 43.61 3.95
4310 4579 3.660501 ACGAAGCATGTCACTCTTGTA 57.339 42.857 0.00 0.00 0.00 2.41
4334 4603 1.334869 GATTTGGATGGTAAGCAGGCG 59.665 52.381 0.00 0.00 0.00 5.52
4339 4608 0.940126 GATGGTAAGCAGGCGATGTG 59.060 55.000 0.00 0.00 0.00 3.21
4345 4614 1.568612 AAGCAGGCGATGTGTTCACG 61.569 55.000 0.00 0.00 0.00 4.35
4353 4622 2.096466 GCGATGTGTTCACGTCATTCAA 60.096 45.455 20.32 0.00 0.00 2.69
4412 4738 6.650807 TGTGACTTAGGAAGCAAAGTTCATAG 59.349 38.462 0.00 0.00 36.10 2.23
4415 4741 8.758829 TGACTTAGGAAGCAAAGTTCATAGATA 58.241 33.333 0.00 0.00 36.10 1.98
4434 4760 4.830046 AGATATTCAGACTACATCGGCTGT 59.170 41.667 0.00 0.00 42.13 4.40
4444 4770 5.736813 ACTACATCGGCTGTAATTAAACCA 58.263 37.500 0.00 0.00 39.82 3.67
4469 4832 5.553162 TGGGGATTTGATTATGCTCTCCTAT 59.447 40.000 0.00 0.00 0.00 2.57
4680 5044 5.283294 TGCAAAATTCAGTTGTGATGTCAG 58.717 37.500 0.00 0.00 30.85 3.51
4823 5187 9.739276 TTCTTCAATATGAAAGACCATACAGTT 57.261 29.630 0.66 0.00 35.73 3.16
4831 5195 5.700832 TGAAAGACCATACAGTTCATGTGAC 59.299 40.000 0.00 0.00 43.80 3.67
4842 5206 0.478072 TCATGTGACACAAAGGCCCT 59.522 50.000 13.23 0.00 0.00 5.19
4901 5265 2.950975 TGAGCTTGTCATTTTCACAGCA 59.049 40.909 0.00 0.00 0.00 4.41
5117 5486 4.265904 TGTTTTATCTCGACAGGCAGAA 57.734 40.909 0.00 0.00 0.00 3.02
5132 5534 4.279169 CAGGCAGAAATGTTTCTCCTTTGA 59.721 41.667 16.78 0.00 45.23 2.69
5226 5628 4.569023 CGGATAGCACCGCAGCGA 62.569 66.667 18.75 0.00 46.20 4.93
5227 5629 2.202878 GGATAGCACCGCAGCGAA 60.203 61.111 18.75 0.00 40.15 4.70
5228 5630 2.240500 GGATAGCACCGCAGCGAAG 61.241 63.158 18.75 9.37 40.15 3.79
5229 5631 1.519455 GATAGCACCGCAGCGAAGT 60.519 57.895 18.75 3.08 40.15 3.01
5230 5632 1.483424 GATAGCACCGCAGCGAAGTC 61.483 60.000 18.75 2.12 40.15 3.01
5231 5633 2.907897 ATAGCACCGCAGCGAAGTCC 62.908 60.000 18.75 0.00 40.15 3.85
5610 6019 0.036388 TCGAGACCCTTGTTGATGCC 60.036 55.000 0.00 0.00 0.00 4.40
5651 6060 6.409524 AATCTCAAAGACTTTTCATGGCAA 57.590 33.333 0.00 0.00 0.00 4.52
5698 6107 3.822996 GCATCATTATCATGCACTGAGC 58.177 45.455 0.00 0.00 45.19 4.26
5718 6127 4.025858 GAGCCTGAGCCTGCCACA 62.026 66.667 0.00 0.00 41.25 4.17
5734 6143 1.007271 ACAGTGTCAGCGAACTCCG 60.007 57.895 0.00 0.00 42.21 4.63
5737 6146 1.733399 GTGTCAGCGAACTCCGTCC 60.733 63.158 0.00 0.00 41.15 4.79
5767 6176 8.854614 AAATTAGGTATAGGATCAGCATTCAC 57.145 34.615 0.00 0.00 0.00 3.18
5882 6291 6.542370 GTGGCAGGTCTGTGTACATAAATTAT 59.458 38.462 0.00 0.00 0.00 1.28
5883 6292 7.713507 GTGGCAGGTCTGTGTACATAAATTATA 59.286 37.037 0.00 0.00 0.00 0.98
5884 6293 7.713507 TGGCAGGTCTGTGTACATAAATTATAC 59.286 37.037 0.00 0.00 0.00 1.47
5885 6294 7.931948 GGCAGGTCTGTGTACATAAATTATACT 59.068 37.037 0.00 0.00 0.00 2.12
5886 6295 8.979574 GCAGGTCTGTGTACATAAATTATACTC 58.020 37.037 0.00 0.00 0.00 2.59
5887 6296 9.477484 CAGGTCTGTGTACATAAATTATACTCC 57.523 37.037 0.00 0.00 0.00 3.85
5888 6297 8.648693 AGGTCTGTGTACATAAATTATACTCCC 58.351 37.037 0.00 0.00 0.00 4.30
5889 6298 8.648693 GGTCTGTGTACATAAATTATACTCCCT 58.351 37.037 0.00 0.00 0.00 4.20
5890 6299 9.694137 GTCTGTGTACATAAATTATACTCCCTC 57.306 37.037 0.00 0.00 0.00 4.30
5891 6300 8.867097 TCTGTGTACATAAATTATACTCCCTCC 58.133 37.037 0.00 0.00 0.00 4.30
5892 6301 7.663827 TGTGTACATAAATTATACTCCCTCCG 58.336 38.462 0.00 0.00 0.00 4.63
5893 6302 7.288389 TGTGTACATAAATTATACTCCCTCCGT 59.712 37.037 0.00 0.00 0.00 4.69
5894 6303 8.146412 GTGTACATAAATTATACTCCCTCCGTT 58.854 37.037 0.00 0.00 0.00 4.44
5895 6304 8.362639 TGTACATAAATTATACTCCCTCCGTTC 58.637 37.037 0.00 0.00 0.00 3.95
5896 6305 6.766429 ACATAAATTATACTCCCTCCGTTCC 58.234 40.000 0.00 0.00 0.00 3.62
5897 6306 6.328148 ACATAAATTATACTCCCTCCGTTCCA 59.672 38.462 0.00 0.00 0.00 3.53
5898 6307 5.703730 AAATTATACTCCCTCCGTTCCAA 57.296 39.130 0.00 0.00 0.00 3.53
5899 6308 5.703730 AATTATACTCCCTCCGTTCCAAA 57.296 39.130 0.00 0.00 0.00 3.28
5900 6309 5.703730 ATTATACTCCCTCCGTTCCAAAA 57.296 39.130 0.00 0.00 0.00 2.44
5901 6310 5.703730 TTATACTCCCTCCGTTCCAAAAT 57.296 39.130 0.00 0.00 0.00 1.82
5902 6311 6.811634 TTATACTCCCTCCGTTCCAAAATA 57.188 37.500 0.00 0.00 0.00 1.40
5903 6312 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5904 6313 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5905 6314 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5906 6315 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5907 6316 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5908 6317 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5909 6318 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5910 6319 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5911 6320 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5912 6321 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5913 6322 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5914 6323 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5915 6324 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5916 6325 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5917 6326 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
5918 6327 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
5919 6328 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
5920 6329 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
5921 6330 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
5922 6331 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
5923 6332 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
5924 6333 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
5925 6334 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
5926 6335 5.705905 AGATGACCCAACTTTGTACTAAAGC 59.294 40.000 14.06 0.00 0.00 3.51
5927 6336 5.043737 TGACCCAACTTTGTACTAAAGCT 57.956 39.130 14.06 3.86 0.00 3.74
5928 6337 6.177310 TGACCCAACTTTGTACTAAAGCTA 57.823 37.500 14.06 0.00 0.00 3.32
5929 6338 6.228258 TGACCCAACTTTGTACTAAAGCTAG 58.772 40.000 14.06 0.00 0.00 3.42
5930 6339 6.183361 TGACCCAACTTTGTACTAAAGCTAGT 60.183 38.462 14.06 0.00 41.43 2.57
5931 6340 7.015487 TGACCCAACTTTGTACTAAAGCTAGTA 59.985 37.037 14.06 0.00 39.23 1.82
5932 6341 7.914859 ACCCAACTTTGTACTAAAGCTAGTAT 58.085 34.615 14.06 0.00 41.57 2.12
5933 6342 9.039165 ACCCAACTTTGTACTAAAGCTAGTATA 57.961 33.333 14.06 0.00 41.57 1.47
5934 6343 9.880157 CCCAACTTTGTACTAAAGCTAGTATAA 57.120 33.333 14.06 1.34 41.57 0.98
5941 6350 9.880157 TTGTACTAAAGCTAGTATAAAGTTGGG 57.120 33.333 3.99 0.00 41.57 4.12
5942 6351 9.039165 TGTACTAAAGCTAGTATAAAGTTGGGT 57.961 33.333 0.00 0.00 41.57 4.51
5943 6352 9.526713 GTACTAAAGCTAGTATAAAGTTGGGTC 57.473 37.037 0.00 0.00 41.57 4.46
5944 6353 8.142485 ACTAAAGCTAGTATAAAGTTGGGTCA 57.858 34.615 0.00 0.00 36.56 4.02
5945 6354 8.769359 ACTAAAGCTAGTATAAAGTTGGGTCAT 58.231 33.333 0.00 0.00 36.56 3.06
5946 6355 9.262358 CTAAAGCTAGTATAAAGTTGGGTCATC 57.738 37.037 0.00 0.00 0.00 2.92
5947 6356 7.439108 AAGCTAGTATAAAGTTGGGTCATCT 57.561 36.000 0.00 0.00 0.00 2.90
5948 6357 8.548880 AAGCTAGTATAAAGTTGGGTCATCTA 57.451 34.615 0.00 0.00 0.00 1.98
5949 6358 8.728596 AGCTAGTATAAAGTTGGGTCATCTAT 57.271 34.615 0.00 0.00 0.00 1.98
5950 6359 9.160412 AGCTAGTATAAAGTTGGGTCATCTATT 57.840 33.333 0.00 0.00 0.00 1.73
5951 6360 9.780186 GCTAGTATAAAGTTGGGTCATCTATTT 57.220 33.333 0.00 0.00 0.00 1.40
5954 6363 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
5955 6364 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
5956 6365 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
5957 6366 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5958 6367 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5959 6368 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5960 6369 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5961 6370 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5962 6371 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5963 6372 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5964 6373 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5965 6374 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
6134 6547 5.010012 CCATTTTATTTCTGGAATAGCGCCT 59.990 40.000 2.29 0.00 32.06 5.52
6135 6548 5.499139 TTTTATTTCTGGAATAGCGCCTG 57.501 39.130 2.29 0.00 32.06 4.85
6140 6553 0.108186 CTGGAATAGCGCCTGACACA 60.108 55.000 2.29 0.00 0.00 3.72
6209 6629 9.561270 GCCTCACTGTTATTATTTCTTTCTTTC 57.439 33.333 0.00 0.00 0.00 2.62
6252 6672 3.926527 TCACTTGAATTCTGACGATTCCG 59.073 43.478 7.05 0.00 42.50 4.30
6257 6677 4.816392 TGAATTCTGACGATTCCGAGAAA 58.184 39.130 7.05 0.00 39.50 2.52
6258 6678 4.625742 TGAATTCTGACGATTCCGAGAAAC 59.374 41.667 7.05 0.00 39.50 2.78
6261 6681 0.734942 TGACGATTCCGAGAAACGCC 60.735 55.000 13.36 6.12 41.07 5.68
6295 6715 6.264088 TGCAAACTTTGAAAAATGCCATTTC 58.736 32.000 2.61 0.00 37.31 2.17
6310 6730 4.005487 CCATTTCCAGTGGCATTTTTCA 57.995 40.909 3.51 0.00 0.00 2.69
6311 6731 3.998341 CCATTTCCAGTGGCATTTTTCAG 59.002 43.478 3.51 0.00 0.00 3.02
6314 6734 1.888512 TCCAGTGGCATTTTTCAGAGC 59.111 47.619 3.51 0.00 0.00 4.09
6319 6740 2.358939 GGCATTTTTCAGAGCCACAG 57.641 50.000 0.00 0.00 46.26 3.66
6371 6792 1.675310 CCATGCCCTTGTGAAGCGA 60.675 57.895 0.00 0.00 0.00 4.93
6502 6923 3.063997 CGAGCTAAGATGAAATTGCCGTT 59.936 43.478 0.00 0.00 0.00 4.44
6503 6924 4.437390 CGAGCTAAGATGAAATTGCCGTTT 60.437 41.667 0.00 0.00 0.00 3.60
6611 7251 1.024271 TCACCTGCAGCAAAAGTGTC 58.976 50.000 8.66 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.410400 AGCGCCCCAGTGGTAAGC 62.410 66.667 8.74 9.97 36.04 3.09
93 94 0.250553 CCTGCTTTACCGAACCACCA 60.251 55.000 0.00 0.00 0.00 4.17
101 102 3.160777 ACGATTAGTCCTGCTTTACCG 57.839 47.619 0.00 0.00 0.00 4.02
210 211 1.449601 GAGTACATGGTGGTGGCGG 60.450 63.158 0.00 0.00 0.00 6.13
212 213 2.106683 GCGAGTACATGGTGGTGGC 61.107 63.158 0.00 0.00 0.00 5.01
294 295 0.999406 CGTTCCTCCGTTAGCATGTG 59.001 55.000 0.00 0.00 0.00 3.21
361 362 1.985895 AGAGAGGATGGTTTCGGGTTT 59.014 47.619 0.00 0.00 0.00 3.27
376 377 1.153745 CGAAAGGCGACCCAGAGAG 60.154 63.158 0.00 0.00 44.57 3.20
721 745 5.986501 AAGTCAGAGAAGGAACGAATACT 57.013 39.130 0.00 0.00 0.00 2.12
722 746 8.705048 ATAAAAGTCAGAGAAGGAACGAATAC 57.295 34.615 0.00 0.00 0.00 1.89
724 748 8.622948 AAATAAAAGTCAGAGAAGGAACGAAT 57.377 30.769 0.00 0.00 0.00 3.34
726 750 7.172703 GGAAAATAAAAGTCAGAGAAGGAACGA 59.827 37.037 0.00 0.00 0.00 3.85
727 751 7.298854 GGAAAATAAAAGTCAGAGAAGGAACG 58.701 38.462 0.00 0.00 0.00 3.95
728 752 7.041303 ACGGAAAATAAAAGTCAGAGAAGGAAC 60.041 37.037 0.00 0.00 0.00 3.62
729 753 6.996282 ACGGAAAATAAAAGTCAGAGAAGGAA 59.004 34.615 0.00 0.00 0.00 3.36
730 754 6.426937 CACGGAAAATAAAAGTCAGAGAAGGA 59.573 38.462 0.00 0.00 0.00 3.36
731 755 6.204882 ACACGGAAAATAAAAGTCAGAGAAGG 59.795 38.462 0.00 0.00 0.00 3.46
732 756 7.042051 TCACACGGAAAATAAAAGTCAGAGAAG 60.042 37.037 0.00 0.00 0.00 2.85
772 796 3.553511 CCAGACAGCTCAATTAGTAAGCG 59.446 47.826 0.00 0.00 40.95 4.68
774 798 5.091261 ACCCAGACAGCTCAATTAGTAAG 57.909 43.478 0.00 0.00 0.00 2.34
809 833 1.647334 AAGTTTGACCCCGACCCCAA 61.647 55.000 0.00 0.00 0.00 4.12
811 835 1.602605 CAAGTTTGACCCCGACCCC 60.603 63.158 0.00 0.00 0.00 4.95
812 836 0.605589 CTCAAGTTTGACCCCGACCC 60.606 60.000 0.00 0.00 32.90 4.46
813 837 0.605589 CCTCAAGTTTGACCCCGACC 60.606 60.000 0.00 0.00 32.90 4.79
814 838 1.235281 GCCTCAAGTTTGACCCCGAC 61.235 60.000 0.00 0.00 32.90 4.79
815 839 1.072505 GCCTCAAGTTTGACCCCGA 59.927 57.895 0.00 0.00 32.90 5.14
961 987 2.675348 CAGAAAAATCGGAGCAGGAGAC 59.325 50.000 0.00 0.00 0.00 3.36
1090 1116 6.497259 AGCCTCCGATAAACTAATATCTCCAA 59.503 38.462 0.00 0.00 31.42 3.53
1120 1146 7.009815 GTCATATGGCAAGTGAATTCAACAATG 59.990 37.037 10.35 8.02 0.00 2.82
1187 1213 1.657594 CATCGAAGCTGCGCCTATATG 59.342 52.381 10.01 3.53 0.00 1.78
1505 1533 4.461431 TGCGAGTCTTCCAGTATTTCAGTA 59.539 41.667 0.00 0.00 0.00 2.74
1579 1607 4.176271 GCAGACTTTACCATTTTGATGGC 58.824 43.478 5.37 0.00 45.47 4.40
1580 1608 5.389859 TGCAGACTTTACCATTTTGATGG 57.610 39.130 3.95 3.95 46.92 3.51
1602 1630 7.627311 ACCAAGTAGACCGGAATTAAAACTAT 58.373 34.615 9.46 0.00 0.00 2.12
1605 1633 6.564709 AACCAAGTAGACCGGAATTAAAAC 57.435 37.500 9.46 0.00 0.00 2.43
1647 1675 7.451255 AGAATTCAGTGAGAGAGAGAGAAAGAA 59.549 37.037 8.44 0.00 0.00 2.52
1648 1676 6.947733 AGAATTCAGTGAGAGAGAGAGAAAGA 59.052 38.462 8.44 0.00 0.00 2.52
1649 1677 7.031372 CAGAATTCAGTGAGAGAGAGAGAAAG 58.969 42.308 8.44 0.00 0.00 2.62
1650 1678 6.071447 CCAGAATTCAGTGAGAGAGAGAGAAA 60.071 42.308 8.44 0.00 0.00 2.52
1651 1679 5.418524 CCAGAATTCAGTGAGAGAGAGAGAA 59.581 44.000 8.44 0.00 0.00 2.87
1652 1680 4.949238 CCAGAATTCAGTGAGAGAGAGAGA 59.051 45.833 8.44 0.00 0.00 3.10
1653 1681 4.949238 TCCAGAATTCAGTGAGAGAGAGAG 59.051 45.833 8.44 0.00 0.00 3.20
1724 1792 5.107065 GGGAGTGTATGTTTTGAAAGAGTCG 60.107 44.000 0.00 0.00 0.00 4.18
1735 1803 4.406456 TGCATTCAAGGGAGTGTATGTTT 58.594 39.130 0.00 0.00 33.61 2.83
1736 1804 4.012374 CTGCATTCAAGGGAGTGTATGTT 58.988 43.478 0.00 0.00 33.61 2.71
1737 1805 3.264193 TCTGCATTCAAGGGAGTGTATGT 59.736 43.478 0.00 0.00 33.61 2.29
1738 1806 3.875727 CTCTGCATTCAAGGGAGTGTATG 59.124 47.826 0.00 0.00 33.61 2.39
1739 1807 3.521126 ACTCTGCATTCAAGGGAGTGTAT 59.479 43.478 0.00 0.00 36.15 2.29
1740 1808 2.906389 ACTCTGCATTCAAGGGAGTGTA 59.094 45.455 0.00 0.00 36.15 2.90
1741 1809 1.701847 ACTCTGCATTCAAGGGAGTGT 59.298 47.619 2.06 0.00 36.15 3.55
1742 1810 2.289882 TGACTCTGCATTCAAGGGAGTG 60.290 50.000 7.20 0.00 37.38 3.51
1743 1811 1.980765 TGACTCTGCATTCAAGGGAGT 59.019 47.619 2.46 2.46 39.54 3.85
1744 1812 2.775911 TGACTCTGCATTCAAGGGAG 57.224 50.000 0.00 0.00 0.00 4.30
1745 1813 2.419159 CGATGACTCTGCATTCAAGGGA 60.419 50.000 0.00 0.00 0.00 4.20
1746 1814 1.938577 CGATGACTCTGCATTCAAGGG 59.061 52.381 0.00 0.00 0.00 3.95
1747 1815 1.938577 CCGATGACTCTGCATTCAAGG 59.061 52.381 0.00 0.00 0.00 3.61
1748 1816 2.625737 ACCGATGACTCTGCATTCAAG 58.374 47.619 0.00 0.00 0.00 3.02
1749 1817 2.768253 ACCGATGACTCTGCATTCAA 57.232 45.000 0.00 0.00 0.00 2.69
1750 1818 2.234661 AGAACCGATGACTCTGCATTCA 59.765 45.455 0.00 0.00 0.00 2.57
1751 1819 2.898705 AGAACCGATGACTCTGCATTC 58.101 47.619 0.00 0.00 0.00 2.67
1752 1820 3.449018 ACTAGAACCGATGACTCTGCATT 59.551 43.478 0.00 0.00 0.00 3.56
1753 1821 3.027412 ACTAGAACCGATGACTCTGCAT 58.973 45.455 0.00 0.00 0.00 3.96
1754 1822 2.447443 ACTAGAACCGATGACTCTGCA 58.553 47.619 0.00 0.00 0.00 4.41
1755 1823 3.546417 CGTACTAGAACCGATGACTCTGC 60.546 52.174 0.00 0.00 0.00 4.26
1756 1824 3.869832 TCGTACTAGAACCGATGACTCTG 59.130 47.826 0.00 0.00 0.00 3.35
1757 1825 4.134379 TCGTACTAGAACCGATGACTCT 57.866 45.455 0.00 0.00 0.00 3.24
1758 1826 4.871993 TTCGTACTAGAACCGATGACTC 57.128 45.455 0.00 0.00 0.00 3.36
1759 1827 5.182760 AGTTTTCGTACTAGAACCGATGACT 59.817 40.000 0.00 5.36 0.00 3.41
1760 1828 5.285607 CAGTTTTCGTACTAGAACCGATGAC 59.714 44.000 0.00 3.36 0.00 3.06
1761 1829 5.396484 CAGTTTTCGTACTAGAACCGATGA 58.604 41.667 0.00 0.00 0.00 2.92
1762 1830 4.031426 GCAGTTTTCGTACTAGAACCGATG 59.969 45.833 0.00 0.00 0.00 3.84
1763 1831 4.171754 GCAGTTTTCGTACTAGAACCGAT 58.828 43.478 0.00 0.00 0.00 4.18
1764 1832 3.568538 GCAGTTTTCGTACTAGAACCGA 58.431 45.455 0.00 0.00 0.00 4.69
1765 1833 2.665052 GGCAGTTTTCGTACTAGAACCG 59.335 50.000 0.00 0.00 0.00 4.44
1766 1834 3.656559 TGGCAGTTTTCGTACTAGAACC 58.343 45.455 0.00 0.00 0.00 3.62
1767 1835 4.150098 CACTGGCAGTTTTCGTACTAGAAC 59.850 45.833 19.43 0.00 0.00 3.01
1768 1836 4.202182 ACACTGGCAGTTTTCGTACTAGAA 60.202 41.667 19.43 0.00 0.00 2.10
1769 1837 3.319972 ACACTGGCAGTTTTCGTACTAGA 59.680 43.478 19.43 0.00 0.00 2.43
1770 1838 3.428870 CACACTGGCAGTTTTCGTACTAG 59.571 47.826 19.43 5.03 0.00 2.57
1771 1839 3.386486 CACACTGGCAGTTTTCGTACTA 58.614 45.455 19.43 0.00 0.00 1.82
1772 1840 2.210116 CACACTGGCAGTTTTCGTACT 58.790 47.619 19.43 0.00 0.00 2.73
1773 1841 1.263217 CCACACTGGCAGTTTTCGTAC 59.737 52.381 19.43 0.00 0.00 3.67
1774 1842 1.134340 ACCACACTGGCAGTTTTCGTA 60.134 47.619 19.43 0.00 42.67 3.43
1775 1843 0.393808 ACCACACTGGCAGTTTTCGT 60.394 50.000 19.43 10.13 42.67 3.85
1776 1844 0.029300 CACCACACTGGCAGTTTTCG 59.971 55.000 19.43 9.40 42.67 3.46
1777 1845 1.388547 TCACCACACTGGCAGTTTTC 58.611 50.000 19.43 0.00 42.67 2.29
1778 1846 2.071778 ATCACCACACTGGCAGTTTT 57.928 45.000 19.43 4.88 42.67 2.43
1779 1847 2.071778 AATCACCACACTGGCAGTTT 57.928 45.000 19.43 9.40 42.67 2.66
1780 1848 2.071778 AAATCACCACACTGGCAGTT 57.928 45.000 19.43 6.96 42.67 3.16
1781 1849 2.071778 AAAATCACCACACTGGCAGT 57.928 45.000 15.88 15.88 42.67 4.40
1782 1850 3.317711 TGTAAAAATCACCACACTGGCAG 59.682 43.478 14.16 14.16 42.67 4.85
1783 1851 3.067461 GTGTAAAAATCACCACACTGGCA 59.933 43.478 0.00 0.00 42.67 4.92
1784 1852 3.067461 TGTGTAAAAATCACCACACTGGC 59.933 43.478 5.43 0.00 42.67 4.85
1785 1853 4.909696 TGTGTAAAAATCACCACACTGG 57.090 40.909 5.43 0.00 45.02 4.00
1786 1854 9.474920 AATTATTGTGTAAAAATCACCACACTG 57.525 29.630 5.43 0.00 41.43 3.66
1787 1855 9.691362 GAATTATTGTGTAAAAATCACCACACT 57.309 29.630 5.43 0.00 41.43 3.55
1788 1856 9.691362 AGAATTATTGTGTAAAAATCACCACAC 57.309 29.630 0.00 0.00 41.28 3.82
1815 1883 9.872721 ATTTGTGCAATGTAATTCATAACATGA 57.127 25.926 0.00 0.00 36.47 3.07
1816 1884 9.909043 CATTTGTGCAATGTAATTCATAACATG 57.091 29.630 0.00 0.00 38.01 3.21
1831 1899 6.594788 ATGTTCCTTAGACATTTGTGCAAT 57.405 33.333 0.00 0.00 34.18 3.56
1832 1900 7.517614 TTATGTTCCTTAGACATTTGTGCAA 57.482 32.000 0.00 0.00 38.58 4.08
1833 1901 7.230510 AGTTTATGTTCCTTAGACATTTGTGCA 59.769 33.333 0.00 0.00 38.58 4.57
1834 1902 7.593825 AGTTTATGTTCCTTAGACATTTGTGC 58.406 34.615 0.00 0.00 38.58 4.57
1835 1903 9.612620 GAAGTTTATGTTCCTTAGACATTTGTG 57.387 33.333 0.00 0.00 38.58 3.33
1836 1904 8.793592 GGAAGTTTATGTTCCTTAGACATTTGT 58.206 33.333 0.00 0.00 40.46 2.83
1938 2009 5.301551 TGTTCAGTCACCTGCAATTTAACAT 59.698 36.000 0.00 0.00 38.66 2.71
2020 2091 5.986501 ACAACAAGGAACAAAAACTACCA 57.013 34.783 0.00 0.00 0.00 3.25
2147 2230 3.120683 TCGCTTGCAGTATTTCGTTTCTG 60.121 43.478 0.00 0.00 0.00 3.02
2153 2236 4.084849 CCTCTTATCGCTTGCAGTATTTCG 60.085 45.833 0.00 0.00 0.00 3.46
2210 2293 7.093354 AGACTGGCGTATATATGAACATTCTG 58.907 38.462 6.12 0.00 0.00 3.02
2227 2310 4.154347 GCTGGGGAGAGACTGGCG 62.154 72.222 0.00 0.00 0.00 5.69
2229 2312 0.979709 TGATGCTGGGGAGAGACTGG 60.980 60.000 0.00 0.00 0.00 4.00
2231 2314 1.202330 CTTGATGCTGGGGAGAGACT 58.798 55.000 0.00 0.00 0.00 3.24
2278 2361 3.144506 AGAGCAATGAAATATCTGGCCG 58.855 45.455 0.00 0.00 0.00 6.13
2306 2389 5.239306 ACGTCATATGCATATCCCAAAGTTG 59.761 40.000 16.46 4.17 0.00 3.16
2307 2390 5.376625 ACGTCATATGCATATCCCAAAGTT 58.623 37.500 16.46 0.00 0.00 2.66
2308 2391 4.973168 ACGTCATATGCATATCCCAAAGT 58.027 39.130 16.46 8.09 0.00 2.66
2309 2392 5.947228 AACGTCATATGCATATCCCAAAG 57.053 39.130 16.46 4.81 0.00 2.77
2310 2393 7.994425 AATAACGTCATATGCATATCCCAAA 57.006 32.000 16.46 1.95 0.00 3.28
2311 2394 8.318412 AGTAATAACGTCATATGCATATCCCAA 58.682 33.333 16.46 0.35 0.00 4.12
2312 2395 7.847096 AGTAATAACGTCATATGCATATCCCA 58.153 34.615 16.46 1.07 0.00 4.37
2313 2396 9.245962 GTAGTAATAACGTCATATGCATATCCC 57.754 37.037 16.46 8.83 0.00 3.85
2348 2431 7.233348 TGAGAGAACATACATCCATATGCTACA 59.767 37.037 0.00 0.00 36.21 2.74
2351 2434 6.676990 TGAGAGAACATACATCCATATGCT 57.323 37.500 0.00 0.00 36.21 3.79
2365 2448 3.132824 TCACTGCTGTCTTTGAGAGAACA 59.867 43.478 0.00 0.00 35.79 3.18
2380 2464 3.743521 TGCAACTCATAAACTCACTGCT 58.256 40.909 0.00 0.00 0.00 4.24
2381 2465 4.488126 TTGCAACTCATAAACTCACTGC 57.512 40.909 0.00 0.00 0.00 4.40
2426 2511 1.517257 CACTTCGGCAGTAGAGCGG 60.517 63.158 0.00 0.00 32.76 5.52
2589 2674 2.748209 TCACCATAGATCGAGGACCA 57.252 50.000 7.93 0.00 0.00 4.02
2590 2675 5.471257 GTTAATCACCATAGATCGAGGACC 58.529 45.833 7.93 0.00 0.00 4.46
2707 2795 7.093377 TGAGAAATAGGGGAAATCAACCAAATG 60.093 37.037 0.00 0.00 0.00 2.32
2723 2811 4.612932 GCAGTTGCTTCTGAGAAATAGG 57.387 45.455 11.67 0.00 37.61 2.57
2748 2836 9.599322 CTACGCAATATCAAAAAGATATGAACC 57.401 33.333 0.00 0.00 46.72 3.62
2749 2837 9.599322 CCTACGCAATATCAAAAAGATATGAAC 57.401 33.333 0.00 0.00 46.72 3.18
2751 2839 7.661437 AGCCTACGCAATATCAAAAAGATATGA 59.339 33.333 0.00 0.00 46.72 2.15
2752 2840 7.810658 AGCCTACGCAATATCAAAAAGATATG 58.189 34.615 0.00 0.00 46.72 1.78
2755 2843 5.822519 TGAGCCTACGCAATATCAAAAAGAT 59.177 36.000 0.00 0.00 37.92 2.40
2762 2857 5.394553 CCAGATATGAGCCTACGCAATATCA 60.395 44.000 15.32 1.20 41.38 2.15
2767 2862 1.270305 GCCAGATATGAGCCTACGCAA 60.270 52.381 0.00 0.00 37.52 4.85
2775 2870 2.551459 GACCACAATGCCAGATATGAGC 59.449 50.000 0.00 0.00 0.00 4.26
2799 2894 7.010275 GGTCCTAGATCGACATACTTTTTCAAC 59.990 40.741 0.00 0.00 31.55 3.18
2813 2908 1.152525 GGCAGGGGTCCTAGATCGA 60.153 63.158 0.00 0.00 29.64 3.59
2827 2922 4.274459 GCTGATAATCCTTACAACTGGCAG 59.726 45.833 14.16 14.16 0.00 4.85
2862 2957 4.214758 GCTACAAGATGTAAAACCAACCGT 59.785 41.667 0.00 0.00 31.67 4.83
2917 3012 8.025243 TCTAATTCCAAAGTAAAGCTAACACG 57.975 34.615 0.00 0.00 0.00 4.49
2946 3041 7.884816 TGAAGATAAAAAGAACGACGAAGAT 57.115 32.000 0.00 0.00 0.00 2.40
2965 3060 9.023962 AGGACATTTTGCTTATTAACATGAAGA 57.976 29.630 0.00 0.00 0.00 2.87
2985 3080 9.905713 TGACTATTAAGCAAAGAAATAGGACAT 57.094 29.630 0.00 0.00 37.46 3.06
2986 3081 9.905713 ATGACTATTAAGCAAAGAAATAGGACA 57.094 29.630 0.00 0.00 37.46 4.02
3075 3329 6.095300 TCCCAATGTAACATAAGCAGAACATG 59.905 38.462 0.00 0.00 0.00 3.21
3078 3332 6.509418 TTCCCAATGTAACATAAGCAGAAC 57.491 37.500 0.00 0.00 0.00 3.01
3112 3366 5.698545 TGGATTTGAAAATTTTAAGCCACCG 59.301 36.000 15.97 0.00 31.67 4.94
3184 3438 5.652014 TGTTATGGTTTCATCACTTCATCCC 59.348 40.000 0.00 0.00 34.96 3.85
3187 3441 7.448161 TGAACTGTTATGGTTTCATCACTTCAT 59.552 33.333 0.00 0.00 34.96 2.57
3223 3477 5.536497 AGGAGAATGGGTTTATTTCCAGT 57.464 39.130 0.00 0.00 36.38 4.00
3307 3564 9.413048 GGTAGCTGATAATCATTGTCTAAGTAC 57.587 37.037 0.00 0.00 0.00 2.73
3308 3565 9.368416 AGGTAGCTGATAATCATTGTCTAAGTA 57.632 33.333 0.00 0.00 0.00 2.24
3309 3566 8.256356 AGGTAGCTGATAATCATTGTCTAAGT 57.744 34.615 0.00 0.00 0.00 2.24
3310 3567 9.553064 AAAGGTAGCTGATAATCATTGTCTAAG 57.447 33.333 0.00 0.00 0.00 2.18
3311 3568 9.330063 CAAAGGTAGCTGATAATCATTGTCTAA 57.670 33.333 0.00 0.00 0.00 2.10
3379 3636 5.868801 GCAGTATCTCTAGGCAGATGAAATC 59.131 44.000 4.56 0.00 46.04 2.17
3388 3645 6.307776 ACATAAGTAGCAGTATCTCTAGGCA 58.692 40.000 0.00 0.00 0.00 4.75
3396 3653 9.967346 TCATAACTTGACATAAGTAGCAGTATC 57.033 33.333 0.00 0.00 0.00 2.24
3398 3655 9.582431 GTTCATAACTTGACATAAGTAGCAGTA 57.418 33.333 0.00 0.00 32.84 2.74
3424 3682 8.147058 AGTAGTTGAATAATCCATACTGCAGAG 58.853 37.037 23.35 9.63 0.00 3.35
3473 3731 4.302455 CCAGATGATGACGGAACTGATAC 58.698 47.826 0.00 0.00 0.00 2.24
3503 3761 5.193728 ACATTGGATTAGGTGTTAGGATGGT 59.806 40.000 0.00 0.00 0.00 3.55
3536 3794 8.450578 TTGTAGTTCACATCTTTCAACTGAAT 57.549 30.769 0.00 0.00 36.90 2.57
3550 3808 4.617253 ACCTGTAGCATTGTAGTTCACA 57.383 40.909 0.00 0.00 34.51 3.58
3580 3841 6.382869 AACATTGGAAGAGTTGAAAGTCAG 57.617 37.500 0.97 0.00 0.00 3.51
3696 3962 7.290061 ACATGATAAAGGGAAGCAGCTAAATA 58.710 34.615 0.00 0.00 0.00 1.40
3709 3975 8.525290 AAAGAACAGGATAACATGATAAAGGG 57.475 34.615 0.00 0.00 0.00 3.95
3727 3993 9.201989 AGATACCACATAGTGAGATAAAGAACA 57.798 33.333 0.00 0.00 35.23 3.18
3739 4005 5.235831 CAGCACATTCAGATACCACATAGTG 59.764 44.000 0.00 0.00 0.00 2.74
3766 4032 4.401022 TGCAATGACAGAACAAGGAGAAT 58.599 39.130 0.00 0.00 0.00 2.40
3797 4063 1.157585 GAAGGAACTCGGTGCTTTCC 58.842 55.000 0.00 0.00 38.49 3.13
3855 4121 2.875933 CCCAAACTTGTAGTTCGCTTGA 59.124 45.455 0.00 0.00 37.47 3.02
3866 4132 3.117512 AGTCCAGAACATCCCAAACTTGT 60.118 43.478 0.00 0.00 0.00 3.16
3929 4195 9.173021 CTGACATCACTTGTAAAACCCATTATA 57.827 33.333 0.00 0.00 39.18 0.98
3950 4216 7.904558 ATAATCATGAGAGGAAGTACTGACA 57.095 36.000 0.09 0.00 0.00 3.58
3985 4254 1.153549 GGCCGCTCTACCAAGTCAG 60.154 63.158 0.00 0.00 0.00 3.51
4063 4332 1.548719 CCATTCTACTGTGGTCGACCA 59.451 52.381 33.23 33.23 45.30 4.02
4064 4333 1.822990 TCCATTCTACTGTGGTCGACC 59.177 52.381 28.17 28.17 36.84 4.79
4070 4339 2.187958 TCTGGGTCCATTCTACTGTGG 58.812 52.381 0.00 0.00 36.82 4.17
4078 4347 2.787473 TGTGTCATCTGGGTCCATTC 57.213 50.000 0.00 0.00 0.00 2.67
4088 4357 4.532126 TGAAGGTACAAGGATGTGTCATCT 59.468 41.667 9.16 0.00 40.84 2.90
4135 4404 3.154710 TGAGAGGCAGAAGTACTTTCGA 58.845 45.455 10.02 0.00 40.86 3.71
4181 4450 5.536916 AGGTAGACCTCTAGGAATTGAATCG 59.463 44.000 2.23 0.00 44.77 3.34
4197 4466 5.966742 AGCTTTTCATTTGAAGGTAGACC 57.033 39.130 0.00 0.00 35.21 3.85
4198 4467 6.970484 TGAAGCTTTTCATTTGAAGGTAGAC 58.030 36.000 0.00 0.00 35.21 2.59
4199 4468 7.765695 ATGAAGCTTTTCATTTGAAGGTAGA 57.234 32.000 0.00 0.00 38.42 2.59
4271 4540 2.800544 CGTTCTCACTGGTGATTTTCGT 59.199 45.455 3.80 0.00 39.13 3.85
4292 4561 4.991056 TCAAGTACAAGAGTGACATGCTTC 59.009 41.667 0.00 0.00 0.00 3.86
4310 4579 4.019174 CCTGCTTACCATCCAAATCAAGT 58.981 43.478 0.00 0.00 0.00 3.16
4334 4603 8.604035 AGTATAATTGAATGACGTGAACACATC 58.396 33.333 0.00 0.01 0.00 3.06
4339 4608 8.869897 TCAGAAGTATAATTGAATGACGTGAAC 58.130 33.333 0.00 0.00 0.00 3.18
4386 4655 4.816385 TGAACTTTGCTTCCTAAGTCACAG 59.184 41.667 0.00 0.00 36.29 3.66
4412 4738 5.127693 ACAGCCGATGTAGTCTGAATATC 57.872 43.478 0.00 0.00 41.60 1.63
4415 4741 5.537300 ATTACAGCCGATGTAGTCTGAAT 57.463 39.130 0.00 0.00 45.05 2.57
4444 4770 4.356190 AGGAGAGCATAATCAAATCCCCAT 59.644 41.667 0.00 0.00 0.00 4.00
4495 4858 1.321474 ACATATTGATGGGGCTTGCG 58.679 50.000 0.00 0.00 37.39 4.85
4823 5187 0.478072 AGGGCCTTTGTGTCACATGA 59.522 50.000 6.48 0.00 0.00 3.07
4842 5206 6.042638 CTTCTCAAGGAACATCTTCAGGTA 57.957 41.667 0.00 0.00 0.00 3.08
4901 5265 4.405036 TGCTCAGCATAGATTCTCTGACTT 59.595 41.667 0.00 0.00 31.71 3.01
5117 5486 5.810074 CCAACGTTTTCAAAGGAGAAACATT 59.190 36.000 0.00 0.00 37.24 2.71
5132 5534 1.133419 TCCCCCTTTAGCCAACGTTTT 60.133 47.619 0.00 0.00 0.00 2.43
5610 6019 0.813184 TTAGTGGCCTTACGTCCTCG 59.187 55.000 3.32 0.00 43.34 4.63
5651 6060 5.721960 TCTTAAGTCTAATCCTGCTGGACTT 59.278 40.000 15.36 15.18 46.51 3.01
5693 6102 2.187424 GCTCAGGCTCAGGCTCAG 59.813 66.667 0.00 0.00 35.88 3.35
5694 6103 3.397439 GGCTCAGGCTCAGGCTCA 61.397 66.667 4.26 0.00 35.88 4.26
5695 6104 3.082701 AGGCTCAGGCTCAGGCTC 61.083 66.667 9.14 0.00 43.01 4.70
5698 6107 4.486503 GGCAGGCTCAGGCTCAGG 62.487 72.222 0.00 0.00 35.88 3.86
5718 6127 3.444737 ACGGAGTTCGCTGACACT 58.555 55.556 0.00 0.00 37.78 3.55
5734 6143 6.500751 TGATCCTATACCTAATTTCCCAGGAC 59.499 42.308 0.00 0.00 33.95 3.85
5737 6146 6.013379 TGCTGATCCTATACCTAATTTCCCAG 60.013 42.308 0.00 0.00 0.00 4.45
5767 6176 5.596836 ACAGCCAACATAACATAAATGGG 57.403 39.130 0.00 0.00 0.00 4.00
5882 6291 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5883 6292 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5884 6293 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5885 6294 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5886 6295 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5887 6296 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5888 6297 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5889 6298 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5890 6299 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5891 6300 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5892 6301 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5893 6302 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
5894 6303 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
5895 6304 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
5896 6305 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
5897 6306 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
5898 6307 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
5899 6308 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
5900 6309 7.553044 GCTTTAGTACAAAGTTGGGTCATCTAT 59.447 37.037 14.90 0.00 0.00 1.98
5901 6310 6.877322 GCTTTAGTACAAAGTTGGGTCATCTA 59.123 38.462 14.90 0.00 0.00 1.98
5902 6311 5.705905 GCTTTAGTACAAAGTTGGGTCATCT 59.294 40.000 14.90 0.00 0.00 2.90
5903 6312 5.705905 AGCTTTAGTACAAAGTTGGGTCATC 59.294 40.000 14.90 1.67 0.00 2.92
5904 6313 5.631119 AGCTTTAGTACAAAGTTGGGTCAT 58.369 37.500 14.90 0.00 0.00 3.06
5905 6314 5.043737 AGCTTTAGTACAAAGTTGGGTCA 57.956 39.130 14.90 0.00 0.00 4.02
5906 6315 6.228995 ACTAGCTTTAGTACAAAGTTGGGTC 58.771 40.000 15.82 4.33 0.00 4.46
5907 6316 6.183810 ACTAGCTTTAGTACAAAGTTGGGT 57.816 37.500 15.82 11.73 0.00 4.51
5908 6317 9.880157 TTATACTAGCTTTAGTACAAAGTTGGG 57.120 33.333 15.82 11.36 35.60 4.12
5915 6324 9.880157 CCCAACTTTATACTAGCTTTAGTACAA 57.120 33.333 0.00 0.00 35.60 2.41
5916 6325 9.039165 ACCCAACTTTATACTAGCTTTAGTACA 57.961 33.333 0.00 0.00 35.60 2.90
5917 6326 9.526713 GACCCAACTTTATACTAGCTTTAGTAC 57.473 37.037 0.00 0.00 35.60 2.73
5918 6327 9.258629 TGACCCAACTTTATACTAGCTTTAGTA 57.741 33.333 0.00 0.00 37.01 1.82
5919 6328 8.142485 TGACCCAACTTTATACTAGCTTTAGT 57.858 34.615 0.00 0.00 0.00 2.24
5920 6329 9.262358 GATGACCCAACTTTATACTAGCTTTAG 57.738 37.037 0.00 0.00 0.00 1.85
5921 6330 8.989131 AGATGACCCAACTTTATACTAGCTTTA 58.011 33.333 0.00 0.00 0.00 1.85
5922 6331 7.862675 AGATGACCCAACTTTATACTAGCTTT 58.137 34.615 0.00 0.00 0.00 3.51
5923 6332 7.439108 AGATGACCCAACTTTATACTAGCTT 57.561 36.000 0.00 0.00 0.00 3.74
5924 6333 8.728596 ATAGATGACCCAACTTTATACTAGCT 57.271 34.615 0.00 0.00 0.00 3.32
5925 6334 9.780186 AAATAGATGACCCAACTTTATACTAGC 57.220 33.333 0.00 0.00 0.00 3.42
5928 6337 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
5929 6338 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
5930 6339 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
5931 6340 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
5932 6341 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
5933 6342 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5934 6343 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5935 6344 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5936 6345 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5937 6346 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5938 6347 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5939 6348 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5940 6349 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5941 6350 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5942 6351 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5943 6352 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5944 6353 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5945 6354 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5946 6355 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5947 6356 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5948 6357 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
5949 6358 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
5950 6359 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
5951 6360 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
5952 6361 3.028850 CAATACTACTCCCTCCGTTCCA 58.971 50.000 0.00 0.00 0.00 3.53
5953 6362 3.294214 TCAATACTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
5954 6363 4.996788 TTCAATACTACTCCCTCCGTTC 57.003 45.455 0.00 0.00 0.00 3.95
5955 6364 7.125356 ACTTTATTCAATACTACTCCCTCCGTT 59.875 37.037 0.00 0.00 0.00 4.44
5956 6365 6.610425 ACTTTATTCAATACTACTCCCTCCGT 59.390 38.462 0.00 0.00 0.00 4.69
5957 6366 6.924060 CACTTTATTCAATACTACTCCCTCCG 59.076 42.308 0.00 0.00 0.00 4.63
5958 6367 8.019656 TCACTTTATTCAATACTACTCCCTCC 57.980 38.462 0.00 0.00 0.00 4.30
5959 6368 9.699703 GATCACTTTATTCAATACTACTCCCTC 57.300 37.037 0.00 0.00 0.00 4.30
5960 6369 9.440761 AGATCACTTTATTCAATACTACTCCCT 57.559 33.333 0.00 0.00 0.00 4.20
5961 6370 9.482627 CAGATCACTTTATTCAATACTACTCCC 57.517 37.037 0.00 0.00 0.00 4.30
6121 6534 0.108186 TGTGTCAGGCGCTATTCCAG 60.108 55.000 7.64 0.00 0.00 3.86
6134 6547 2.346766 ACTCCAAAGCATGTGTGTCA 57.653 45.000 0.00 0.00 0.00 3.58
6135 6548 3.753272 ACATACTCCAAAGCATGTGTGTC 59.247 43.478 0.00 0.00 37.96 3.67
6140 6553 2.489329 GCACACATACTCCAAAGCATGT 59.511 45.455 0.00 0.00 39.61 3.21
6244 6664 1.012486 GTGGCGTTTCTCGGAATCGT 61.012 55.000 14.33 0.00 40.26 3.73
6252 6672 2.053627 CAAATTGCAGTGGCGTTTCTC 58.946 47.619 0.00 0.00 45.35 2.87
6295 6715 1.067354 GGCTCTGAAAAATGCCACTGG 60.067 52.381 0.00 0.00 44.34 4.00
6310 6730 2.114616 CTCCATTCCTACTGTGGCTCT 58.885 52.381 0.00 0.00 33.01 4.09
6311 6731 1.139853 CCTCCATTCCTACTGTGGCTC 59.860 57.143 0.00 0.00 33.01 4.70
6314 6734 1.765314 CTCCCTCCATTCCTACTGTGG 59.235 57.143 0.00 0.00 0.00 4.17
6319 6740 6.142259 TCTATCTACTCCCTCCATTCCTAC 57.858 45.833 0.00 0.00 0.00 3.18
6371 6792 4.159135 GCATTTTGATGGTGGTGAAGAGAT 59.841 41.667 0.00 0.00 0.00 2.75
6514 7154 4.401519 CAGATGATCATTTCCTGTTTGCCT 59.598 41.667 10.14 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.