Multiple sequence alignment - TraesCS3A01G227800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G227800 chr3A 100.000 4015 0 0 1 4015 426650842 426654856 0.000000e+00 7415.0
1 TraesCS3A01G227800 chr3A 100.000 138 0 0 4400 4537 426655241 426655378 5.820000e-64 255.0
2 TraesCS3A01G227800 chr3B 94.714 2308 83 15 1472 3764 413991714 413993997 0.000000e+00 3550.0
3 TraesCS3A01G227800 chr3B 89.783 1478 71 25 6 1425 413990233 413991688 0.000000e+00 1820.0
4 TraesCS3A01G227800 chr3B 89.865 296 25 2 924 1219 726126170 726126460 4.290000e-100 375.0
5 TraesCS3A01G227800 chr3D 91.649 1449 72 19 6 1425 307570961 307569533 0.000000e+00 1960.0
6 TraesCS3A01G227800 chr3D 96.064 1118 32 10 2688 3801 307568097 307566988 0.000000e+00 1810.0
7 TraesCS3A01G227800 chr3D 93.865 652 23 11 2008 2659 307568728 307568094 0.000000e+00 966.0
8 TraesCS3A01G227800 chr3D 94.063 539 24 4 1483 2013 307569365 307568827 0.000000e+00 811.0
9 TraesCS3A01G227800 chr1D 82.665 1546 198 41 2039 3559 2126354 2124854 0.000000e+00 1306.0
10 TraesCS3A01G227800 chr1D 86.330 812 100 9 2725 3526 2119970 2119160 0.000000e+00 874.0
11 TraesCS3A01G227800 chr1D 83.910 578 67 16 2039 2603 2120536 2119972 3.110000e-146 529.0
12 TraesCS3A01G227800 chr1D 85.028 354 40 9 944 1295 2122160 2121818 9.340000e-92 348.0
13 TraesCS3A01G227800 chr1D 97.561 41 1 0 1816 1856 2121334 2121294 2.260000e-08 71.3
14 TraesCS3A01G227800 chr1B 87.129 808 94 7 2725 3524 1472039 1472844 0.000000e+00 907.0
15 TraesCS3A01G227800 chr1B 87.097 806 95 7 2725 3524 1424593 1423791 0.000000e+00 904.0
16 TraesCS3A01G227800 chr1B 84.948 578 62 13 2039 2603 1425160 1424595 3.060000e-156 562.0
17 TraesCS3A01G227800 chr1B 84.602 578 64 13 2039 2603 1471472 1472037 6.630000e-153 551.0
18 TraesCS3A01G227800 chr1B 90.688 247 22 1 990 1235 623345617 623345863 1.220000e-85 327.0
19 TraesCS3A01G227800 chr1B 87.692 65 6 2 1661 1725 1426029 1425967 1.750000e-09 75.0
20 TraesCS3A01G227800 chr1B 86.154 65 7 2 1661 1725 1470759 1470821 8.140000e-08 69.4
21 TraesCS3A01G227800 chr1A 85.444 845 104 11 2725 3559 1229728 1228893 0.000000e+00 861.0
22 TraesCS3A01G227800 chr1A 87.891 256 23 4 2348 2603 1229977 1229730 1.230000e-75 294.0
23 TraesCS3A01G227800 chr4D 84.588 850 112 10 2697 3532 3252703 3253547 0.000000e+00 826.0
24 TraesCS3A01G227800 chr4D 88.053 226 27 0 2039 2264 3252094 3252319 7.480000e-68 268.0
25 TraesCS3A01G227800 chr4D 82.818 291 45 4 1035 1322 3251393 3251681 5.820000e-64 255.0
26 TraesCS3A01G227800 chr4D 81.818 132 24 0 4400 4531 293669104 293668973 1.330000e-20 111.0
27 TraesCS3A01G227800 chr4A 83.041 855 124 9 2696 3538 602270635 602269790 0.000000e+00 756.0
28 TraesCS3A01G227800 chr4A 86.026 229 32 0 2039 2267 735504364 735504136 3.510000e-61 246.0
29 TraesCS3A01G227800 chr4A 85.782 211 30 0 2057 2267 602271225 602271015 1.640000e-54 224.0
30 TraesCS3A01G227800 chr5B 80.184 1085 150 41 2034 3107 636895522 636896552 0.000000e+00 752.0
31 TraesCS3A01G227800 chr5B 86.901 313 37 4 985 1295 636891154 636891464 9.340000e-92 348.0
32 TraesCS3A01G227800 chr5D 80.192 1040 149 32 2033 3063 506158363 506159354 0.000000e+00 726.0
33 TraesCS3A01G227800 chr5D 89.381 452 43 2 3109 3560 506159480 506159926 8.520000e-157 564.0
34 TraesCS3A01G227800 chr5D 89.423 312 31 2 985 1295 506156066 506156376 4.250000e-105 392.0
35 TraesCS3A01G227800 chr5A 85.849 318 37 5 985 1295 633977518 633977834 9.410000e-87 331.0
36 TraesCS3A01G227800 chr6A 89.372 207 18 2 3802 4005 617942282 617942077 1.620000e-64 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G227800 chr3A 426650842 426655378 4536 False 3835.000000 7415 100.000000 1 4537 2 chr3A.!!$F1 4536
1 TraesCS3A01G227800 chr3B 413990233 413993997 3764 False 2685.000000 3550 92.248500 6 3764 2 chr3B.!!$F2 3758
2 TraesCS3A01G227800 chr3D 307566988 307570961 3973 True 1386.750000 1960 93.910250 6 3801 4 chr3D.!!$R1 3795
3 TraesCS3A01G227800 chr1D 2119160 2126354 7194 True 625.660000 1306 87.098800 944 3559 5 chr1D.!!$R1 2615
4 TraesCS3A01G227800 chr1B 1423791 1426029 2238 True 513.666667 904 86.579000 1661 3524 3 chr1B.!!$R1 1863
5 TraesCS3A01G227800 chr1B 1470759 1472844 2085 False 509.133333 907 85.961667 1661 3524 3 chr1B.!!$F2 1863
6 TraesCS3A01G227800 chr1A 1228893 1229977 1084 True 577.500000 861 86.667500 2348 3559 2 chr1A.!!$R1 1211
7 TraesCS3A01G227800 chr4D 3251393 3253547 2154 False 449.666667 826 85.153000 1035 3532 3 chr4D.!!$F1 2497
8 TraesCS3A01G227800 chr4A 602269790 602271225 1435 True 490.000000 756 84.411500 2057 3538 2 chr4A.!!$R2 1481
9 TraesCS3A01G227800 chr5B 636895522 636896552 1030 False 752.000000 752 80.184000 2034 3107 1 chr5B.!!$F2 1073
10 TraesCS3A01G227800 chr5D 506156066 506159926 3860 False 560.666667 726 86.332000 985 3560 3 chr5D.!!$F1 2575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 627 0.251742 CCCACAAAGATTGAGGCCCA 60.252 55.000 0.00 0.0 39.69 5.36 F
957 4208 0.325577 ATCAACCCCATTCCCCTTGC 60.326 55.000 0.00 0.0 0.00 4.01 F
1429 4708 2.420687 CCAAGAGCAGATTCAGTACCCC 60.421 54.545 0.00 0.0 0.00 4.95 F
1430 4709 2.503356 CAAGAGCAGATTCAGTACCCCT 59.497 50.000 0.00 0.0 0.00 4.79 F
1431 4710 3.689872 AGAGCAGATTCAGTACCCCTA 57.310 47.619 0.00 0.0 0.00 3.53 F
2303 8155 0.964860 TTGGGTCATTGACATGGCGG 60.965 55.000 18.09 0.0 35.65 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 4916 0.248743 CCAATAGCGGTGCATGCAAG 60.249 55.000 24.58 20.21 33.85 4.01 R
2282 8134 0.532115 GCCATGTCAATGACCCAACC 59.468 55.000 11.24 0.00 35.67 3.77 R
2303 8155 1.181098 ACCAACCAATGCCAGTCTGC 61.181 55.000 0.00 0.00 0.00 4.26 R
2304 8156 1.270550 GAACCAACCAATGCCAGTCTG 59.729 52.381 0.00 0.00 0.00 3.51 R
2619 8496 2.159366 ACGTGCAGAAGGAGAGTAATCG 60.159 50.000 0.00 0.00 0.00 3.34 R
3882 9900 0.034059 GTGATATGGGGAGAGCACCG 59.966 60.000 0.00 0.00 42.06 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 5.944599 ACATCTGCATTCACTTGATCTTTCT 59.055 36.000 0.00 0.00 0.00 2.52
79 80 7.332926 TCTGCATTCACTTGATCTTTCTTAGAC 59.667 37.037 0.00 0.00 35.19 2.59
84 85 5.184096 TCACTTGATCTTTCTTAGACGAGCT 59.816 40.000 0.00 0.00 35.19 4.09
86 87 6.690957 CACTTGATCTTTCTTAGACGAGCTAG 59.309 42.308 0.00 0.00 35.19 3.42
89 90 5.125578 TGATCTTTCTTAGACGAGCTAGCAA 59.874 40.000 18.83 0.00 35.19 3.91
90 91 5.386958 TCTTTCTTAGACGAGCTAGCAAA 57.613 39.130 18.83 4.26 0.00 3.68
95 100 1.009389 AGACGAGCTAGCAAACACGC 61.009 55.000 18.83 9.97 0.00 5.34
111 116 0.663153 ACGCACGATGATCGATCAGA 59.337 50.000 30.11 10.92 43.74 3.27
118 123 5.273944 CACGATGATCGATCAGAGTAAACA 58.726 41.667 30.11 7.15 43.74 2.83
125 130 7.030165 TGATCGATCAGAGTAAACAGAAAGAC 58.970 38.462 23.99 0.00 32.11 3.01
128 133 5.619309 CGATCAGAGTAAACAGAAAGACGGA 60.619 44.000 0.00 0.00 0.00 4.69
129 134 4.868067 TCAGAGTAAACAGAAAGACGGAC 58.132 43.478 0.00 0.00 0.00 4.79
130 135 3.669122 CAGAGTAAACAGAAAGACGGACG 59.331 47.826 0.00 0.00 0.00 4.79
199 216 1.060937 CCATGCTAGCGAACGCAAC 59.939 57.895 20.66 9.98 44.88 4.17
200 217 1.296145 CATGCTAGCGAACGCAACG 60.296 57.895 20.66 9.45 44.88 4.10
327 344 6.867799 TGCACATGTAATTTCTAATTTGCG 57.132 33.333 0.00 0.00 0.00 4.85
401 422 4.652822 AGTTTTGGGACACTATCTGGTTC 58.347 43.478 0.00 0.00 39.29 3.62
544 569 3.132646 AGGAGAAAGCAGATAGTCAGCTG 59.867 47.826 7.63 7.63 38.32 4.24
582 607 0.519961 TCTCGATCGACTGCAAACGA 59.480 50.000 15.15 15.23 42.49 3.85
583 608 0.635731 CTCGATCGACTGCAAACGAC 59.364 55.000 15.15 9.59 41.17 4.34
589 614 1.433053 CGACTGCAAACGACCCACAA 61.433 55.000 6.37 0.00 0.00 3.33
601 626 0.251787 ACCCACAAAGATTGAGGCCC 60.252 55.000 0.00 0.00 39.69 5.80
602 627 0.251742 CCCACAAAGATTGAGGCCCA 60.252 55.000 0.00 0.00 39.69 5.36
603 628 1.620524 CCCACAAAGATTGAGGCCCAT 60.621 52.381 0.00 0.00 39.69 4.00
604 629 1.479323 CCACAAAGATTGAGGCCCATG 59.521 52.381 0.00 0.00 34.68 3.66
800 850 1.005867 CAGGGCGCAAAAATGTGCT 60.006 52.632 10.83 0.00 44.03 4.40
811 861 4.442073 GCAAAAATGTGCTCTATAATGGCG 59.558 41.667 0.00 0.00 41.51 5.69
812 862 4.836125 AAAATGTGCTCTATAATGGCGG 57.164 40.909 0.00 0.00 0.00 6.13
857 910 7.684619 AGGCCTCCACCATCTTTTATATATAGT 59.315 37.037 0.00 0.00 0.00 2.12
957 4208 0.325577 ATCAACCCCATTCCCCTTGC 60.326 55.000 0.00 0.00 0.00 4.01
962 4213 3.142838 CCATTCCCCTTGCGCTGG 61.143 66.667 9.73 11.16 0.00 4.85
1210 4464 3.685214 CTCAACGAGGACGCGAGGG 62.685 68.421 15.93 0.00 43.96 4.30
1425 4704 5.227569 TGTTTCCAAGAGCAGATTCAGTA 57.772 39.130 0.00 0.00 0.00 2.74
1427 4706 3.895232 TCCAAGAGCAGATTCAGTACC 57.105 47.619 0.00 0.00 0.00 3.34
1428 4707 2.501723 TCCAAGAGCAGATTCAGTACCC 59.498 50.000 0.00 0.00 0.00 3.69
1429 4708 2.420687 CCAAGAGCAGATTCAGTACCCC 60.421 54.545 0.00 0.00 0.00 4.95
1430 4709 2.503356 CAAGAGCAGATTCAGTACCCCT 59.497 50.000 0.00 0.00 0.00 4.79
1431 4710 3.689872 AGAGCAGATTCAGTACCCCTA 57.310 47.619 0.00 0.00 0.00 3.53
1432 4711 3.995636 AGAGCAGATTCAGTACCCCTAA 58.004 45.455 0.00 0.00 0.00 2.69
1433 4712 4.362677 AGAGCAGATTCAGTACCCCTAAA 58.637 43.478 0.00 0.00 0.00 1.85
1434 4713 4.783227 AGAGCAGATTCAGTACCCCTAAAA 59.217 41.667 0.00 0.00 0.00 1.52
1435 4714 5.250774 AGAGCAGATTCAGTACCCCTAAAAA 59.749 40.000 0.00 0.00 0.00 1.94
1461 4740 8.571461 AAAGAGCAGATTCATCAGTTTTCATA 57.429 30.769 0.00 0.00 0.00 2.15
1464 4743 9.017509 AGAGCAGATTCATCAGTTTTCATAAAA 57.982 29.630 0.00 0.00 0.00 1.52
1465 4744 9.630098 GAGCAGATTCATCAGTTTTCATAAAAA 57.370 29.630 0.00 0.00 31.13 1.94
1550 4971 6.222389 TCATGCTAATTTTCTTTTGTGTGGG 58.778 36.000 0.00 0.00 0.00 4.61
1597 5135 9.382275 AGTTCAATTCAACTTTATTGCAGTTTT 57.618 25.926 0.00 0.00 32.34 2.43
1610 5151 9.906660 TTTATTGCAGTTTTGTAACAGATTAGG 57.093 29.630 0.00 0.00 36.70 2.69
1625 5166 6.106673 ACAGATTAGGACAACCAGATTTACG 58.893 40.000 0.00 0.00 38.94 3.18
2025 7861 5.105310 ACAAGCTACCTCGTGATTGTCTAAT 60.105 40.000 0.00 0.00 0.00 1.73
2272 8108 6.873997 TCGAGAAGCTCAAGGTGATTTATTA 58.126 36.000 0.00 0.00 0.00 0.98
2273 8109 7.500992 TCGAGAAGCTCAAGGTGATTTATTAT 58.499 34.615 0.00 0.00 0.00 1.28
2303 8155 0.964860 TTGGGTCATTGACATGGCGG 60.965 55.000 18.09 0.00 35.65 6.13
2304 8156 2.774799 GGGTCATTGACATGGCGGC 61.775 63.158 18.09 0.00 35.65 6.53
2322 8175 1.181098 GCAGACTGGCATTGGTTGGT 61.181 55.000 4.26 0.00 0.00 3.67
2618 8495 5.991606 TGGTTATTTGTGAGTTCTCTGTCTG 59.008 40.000 1.53 0.00 0.00 3.51
2619 8496 5.106908 GGTTATTTGTGAGTTCTCTGTCTGC 60.107 44.000 1.53 0.00 0.00 4.26
2665 8570 3.847542 TCGATCAATGGTGCAAATTTGG 58.152 40.909 19.47 1.46 0.00 3.28
2670 8575 4.530875 TCAATGGTGCAAATTTGGGTTTT 58.469 34.783 19.47 0.00 0.00 2.43
2710 8615 4.956075 TGCAGACTCTGTCCTGATACATTA 59.044 41.667 7.89 0.00 33.43 1.90
3392 9403 4.742201 GTCGGCCAGAGCTTCGCA 62.742 66.667 2.24 0.00 39.73 5.10
3686 9702 3.131223 AGTCGGTTGTATCAGATGACTGG 59.869 47.826 0.00 0.00 43.60 4.00
3767 9785 7.861176 TTTTAACCATGCGAAACACTATTTC 57.139 32.000 0.00 0.00 0.00 2.17
3772 9790 6.149633 ACCATGCGAAACACTATTTCTTTTC 58.850 36.000 0.00 0.00 0.00 2.29
3773 9791 6.016276 ACCATGCGAAACACTATTTCTTTTCT 60.016 34.615 0.00 0.00 0.00 2.52
3818 9836 5.880054 AAGATGGTAAACATTTCTGACCG 57.120 39.130 0.00 0.00 40.72 4.79
3819 9837 4.261801 AGATGGTAAACATTTCTGACCGG 58.738 43.478 0.00 0.00 40.72 5.28
3820 9838 2.156098 TGGTAAACATTTCTGACCGGC 58.844 47.619 0.00 0.00 32.55 6.13
3821 9839 1.129811 GGTAAACATTTCTGACCGGCG 59.870 52.381 0.00 0.00 0.00 6.46
3822 9840 1.129811 GTAAACATTTCTGACCGGCGG 59.870 52.381 27.06 27.06 0.00 6.13
3823 9841 0.250553 AAACATTTCTGACCGGCGGA 60.251 50.000 35.78 10.64 0.00 5.54
3824 9842 0.953960 AACATTTCTGACCGGCGGAC 60.954 55.000 35.78 28.10 0.00 4.79
3825 9843 2.106683 CATTTCTGACCGGCGGACC 61.107 63.158 35.78 23.27 0.00 4.46
3838 9856 2.031465 GGACCGGCCGAAACTTGA 59.969 61.111 30.73 0.00 0.00 3.02
3839 9857 2.033194 GGACCGGCCGAAACTTGAG 61.033 63.158 30.73 9.82 0.00 3.02
3840 9858 2.668550 ACCGGCCGAAACTTGAGC 60.669 61.111 30.73 0.00 0.00 4.26
3841 9859 3.431725 CCGGCCGAAACTTGAGCC 61.432 66.667 30.73 0.00 42.18 4.70
3843 9861 3.431725 GGCCGAAACTTGAGCCGG 61.432 66.667 0.00 0.00 44.34 6.13
3844 9862 2.668550 GCCGAAACTTGAGCCGGT 60.669 61.111 1.90 0.00 43.51 5.28
3845 9863 2.677979 GCCGAAACTTGAGCCGGTC 61.678 63.158 1.90 0.00 43.51 4.79
3846 9864 2.380410 CCGAAACTTGAGCCGGTCG 61.380 63.158 1.90 0.90 37.40 4.79
3847 9865 2.861006 GAAACTTGAGCCGGTCGC 59.139 61.111 1.90 0.00 37.98 5.19
3848 9866 3.011760 GAAACTTGAGCCGGTCGCG 62.012 63.158 1.90 0.00 44.76 5.87
3868 9886 2.948093 GCGGTGCGTACGATAAAGA 58.052 52.632 21.65 0.00 0.00 2.52
3869 9887 0.844503 GCGGTGCGTACGATAAAGAG 59.155 55.000 21.65 3.88 0.00 2.85
3870 9888 1.532505 GCGGTGCGTACGATAAAGAGA 60.533 52.381 21.65 0.00 0.00 3.10
3871 9889 2.373269 CGGTGCGTACGATAAAGAGAG 58.627 52.381 21.65 0.00 0.00 3.20
3872 9890 2.031314 CGGTGCGTACGATAAAGAGAGA 59.969 50.000 21.65 0.00 0.00 3.10
3873 9891 3.303857 CGGTGCGTACGATAAAGAGAGAT 60.304 47.826 21.65 0.00 0.00 2.75
3874 9892 4.220572 GGTGCGTACGATAAAGAGAGATC 58.779 47.826 21.65 0.00 0.00 2.75
3876 9894 3.805971 TGCGTACGATAAAGAGAGATCGA 59.194 43.478 21.65 0.00 46.19 3.59
3877 9895 4.271776 TGCGTACGATAAAGAGAGATCGAA 59.728 41.667 21.65 0.00 46.19 3.71
3878 9896 4.608058 GCGTACGATAAAGAGAGATCGAAC 59.392 45.833 21.65 0.00 46.19 3.95
3879 9897 4.834408 CGTACGATAAAGAGAGATCGAACG 59.166 45.833 10.44 0.00 46.19 3.95
3880 9898 3.619729 ACGATAAAGAGAGATCGAACGC 58.380 45.455 10.92 0.00 46.19 4.84
3881 9899 3.312973 ACGATAAAGAGAGATCGAACGCT 59.687 43.478 10.92 0.00 46.19 5.07
3882 9900 3.903644 CGATAAAGAGAGATCGAACGCTC 59.096 47.826 16.79 16.79 46.19 5.03
3883 9901 2.181426 AAAGAGAGATCGAACGCTCG 57.819 50.000 18.05 0.82 46.87 5.03
3884 9902 0.378962 AAGAGAGATCGAACGCTCGG 59.621 55.000 18.05 0.00 45.49 4.63
3885 9903 0.745128 AGAGAGATCGAACGCTCGGT 60.745 55.000 18.05 0.00 45.49 4.69
3886 9904 0.590230 GAGAGATCGAACGCTCGGTG 60.590 60.000 10.43 0.00 45.49 4.94
3887 9905 2.202623 AGATCGAACGCTCGGTGC 60.203 61.111 8.55 0.00 45.49 5.01
3888 9906 2.202623 GATCGAACGCTCGGTGCT 60.203 61.111 8.55 0.00 45.49 4.40
3889 9907 2.202623 ATCGAACGCTCGGTGCTC 60.203 61.111 8.55 0.00 45.49 4.26
3890 9908 2.600122 GATCGAACGCTCGGTGCTCT 62.600 60.000 8.55 0.00 45.49 4.09
3891 9909 2.600122 ATCGAACGCTCGGTGCTCTC 62.600 60.000 8.55 0.00 45.49 3.20
3892 9910 2.507324 GAACGCTCGGTGCTCTCC 60.507 66.667 0.23 0.00 40.11 3.71
3893 9911 3.991536 GAACGCTCGGTGCTCTCCC 62.992 68.421 0.23 0.00 40.11 4.30
3896 9914 3.474570 GCTCGGTGCTCTCCCCAT 61.475 66.667 0.00 0.00 38.95 4.00
3897 9915 2.134287 GCTCGGTGCTCTCCCCATA 61.134 63.158 0.00 0.00 38.95 2.74
3898 9916 1.476007 GCTCGGTGCTCTCCCCATAT 61.476 60.000 0.00 0.00 38.95 1.78
3899 9917 0.605589 CTCGGTGCTCTCCCCATATC 59.394 60.000 0.00 0.00 0.00 1.63
3900 9918 0.105709 TCGGTGCTCTCCCCATATCA 60.106 55.000 0.00 0.00 0.00 2.15
3901 9919 0.034059 CGGTGCTCTCCCCATATCAC 59.966 60.000 0.00 0.00 0.00 3.06
3902 9920 1.131638 GGTGCTCTCCCCATATCACA 58.868 55.000 0.00 0.00 0.00 3.58
3903 9921 1.490490 GGTGCTCTCCCCATATCACAA 59.510 52.381 0.00 0.00 0.00 3.33
3904 9922 2.565841 GTGCTCTCCCCATATCACAAC 58.434 52.381 0.00 0.00 0.00 3.32
3905 9923 2.092968 GTGCTCTCCCCATATCACAACA 60.093 50.000 0.00 0.00 0.00 3.33
3906 9924 2.092968 TGCTCTCCCCATATCACAACAC 60.093 50.000 0.00 0.00 0.00 3.32
3907 9925 2.171448 GCTCTCCCCATATCACAACACT 59.829 50.000 0.00 0.00 0.00 3.55
3908 9926 3.742640 GCTCTCCCCATATCACAACACTC 60.743 52.174 0.00 0.00 0.00 3.51
3909 9927 2.430694 TCTCCCCATATCACAACACTCG 59.569 50.000 0.00 0.00 0.00 4.18
3910 9928 1.484653 TCCCCATATCACAACACTCGG 59.515 52.381 0.00 0.00 0.00 4.63
3911 9929 1.209504 CCCCATATCACAACACTCGGT 59.790 52.381 0.00 0.00 0.00 4.69
3912 9930 2.279741 CCCATATCACAACACTCGGTG 58.720 52.381 2.92 2.92 39.75 4.94
3913 9931 1.665679 CCATATCACAACACTCGGTGC 59.334 52.381 4.23 0.00 36.98 5.01
3914 9932 2.621338 CATATCACAACACTCGGTGCT 58.379 47.619 4.23 0.00 36.98 4.40
3915 9933 3.430236 CCATATCACAACACTCGGTGCTA 60.430 47.826 4.23 0.00 36.98 3.49
3916 9934 4.371786 CATATCACAACACTCGGTGCTAT 58.628 43.478 4.23 0.00 36.98 2.97
3917 9935 2.363788 TCACAACACTCGGTGCTATC 57.636 50.000 4.23 0.00 36.98 2.08
3918 9936 1.067142 TCACAACACTCGGTGCTATCC 60.067 52.381 4.23 0.00 36.98 2.59
3919 9937 1.066858 CACAACACTCGGTGCTATCCT 60.067 52.381 4.23 0.00 36.98 3.24
3920 9938 1.623811 ACAACACTCGGTGCTATCCTT 59.376 47.619 4.23 0.00 36.98 3.36
3921 9939 2.829720 ACAACACTCGGTGCTATCCTTA 59.170 45.455 4.23 0.00 36.98 2.69
3922 9940 3.187700 CAACACTCGGTGCTATCCTTAC 58.812 50.000 4.23 0.00 36.98 2.34
3923 9941 1.755380 ACACTCGGTGCTATCCTTACC 59.245 52.381 4.23 0.00 36.98 2.85
3924 9942 2.032620 CACTCGGTGCTATCCTTACCT 58.967 52.381 0.00 0.00 32.28 3.08
3925 9943 3.220110 CACTCGGTGCTATCCTTACCTA 58.780 50.000 0.00 0.00 32.28 3.08
3926 9944 3.827302 CACTCGGTGCTATCCTTACCTAT 59.173 47.826 0.00 0.00 32.28 2.57
3927 9945 4.080687 ACTCGGTGCTATCCTTACCTATC 58.919 47.826 0.00 0.00 32.28 2.08
3928 9946 3.428532 TCGGTGCTATCCTTACCTATCC 58.571 50.000 0.00 0.00 32.28 2.59
3929 9947 3.162666 CGGTGCTATCCTTACCTATCCA 58.837 50.000 0.00 0.00 32.28 3.41
3930 9948 3.769844 CGGTGCTATCCTTACCTATCCAT 59.230 47.826 0.00 0.00 32.28 3.41
3931 9949 4.382040 CGGTGCTATCCTTACCTATCCATG 60.382 50.000 0.00 0.00 32.28 3.66
3932 9950 4.508662 GTGCTATCCTTACCTATCCATGC 58.491 47.826 0.00 0.00 0.00 4.06
3933 9951 4.020218 GTGCTATCCTTACCTATCCATGCA 60.020 45.833 0.00 0.00 0.00 3.96
3934 9952 4.784838 TGCTATCCTTACCTATCCATGCAT 59.215 41.667 0.00 0.00 0.00 3.96
3935 9953 5.104776 TGCTATCCTTACCTATCCATGCATC 60.105 44.000 0.00 0.00 0.00 3.91
3936 9954 3.961480 TCCTTACCTATCCATGCATCG 57.039 47.619 0.00 0.00 0.00 3.84
3937 9955 3.506398 TCCTTACCTATCCATGCATCGA 58.494 45.455 0.00 0.00 0.00 3.59
3938 9956 4.096681 TCCTTACCTATCCATGCATCGAT 58.903 43.478 11.68 11.68 0.00 3.59
3939 9957 4.160439 TCCTTACCTATCCATGCATCGATC 59.840 45.833 10.28 0.00 0.00 3.69
3940 9958 4.161189 CCTTACCTATCCATGCATCGATCT 59.839 45.833 10.28 0.00 0.00 2.75
3941 9959 5.360999 CCTTACCTATCCATGCATCGATCTA 59.639 44.000 10.28 0.00 0.00 1.98
3942 9960 6.041409 CCTTACCTATCCATGCATCGATCTAT 59.959 42.308 10.28 0.41 0.00 1.98
3943 9961 5.528043 ACCTATCCATGCATCGATCTATC 57.472 43.478 10.28 0.00 0.00 2.08
3944 9962 4.343526 ACCTATCCATGCATCGATCTATCC 59.656 45.833 10.28 0.00 0.00 2.59
3945 9963 3.834489 ATCCATGCATCGATCTATCCC 57.166 47.619 0.37 0.00 0.00 3.85
3946 9964 2.825223 TCCATGCATCGATCTATCCCT 58.175 47.619 0.00 0.00 0.00 4.20
3947 9965 2.762887 TCCATGCATCGATCTATCCCTC 59.237 50.000 0.00 0.00 0.00 4.30
3948 9966 2.158986 CCATGCATCGATCTATCCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
3949 9967 2.612285 TGCATCGATCTATCCCTCCT 57.388 50.000 0.00 0.00 0.00 3.69
3950 9968 2.894731 TGCATCGATCTATCCCTCCTT 58.105 47.619 0.00 0.00 0.00 3.36
3951 9969 2.828520 TGCATCGATCTATCCCTCCTTC 59.171 50.000 0.00 0.00 0.00 3.46
3952 9970 3.096092 GCATCGATCTATCCCTCCTTCT 58.904 50.000 0.00 0.00 0.00 2.85
3953 9971 3.119173 GCATCGATCTATCCCTCCTTCTG 60.119 52.174 0.00 0.00 0.00 3.02
3954 9972 3.885976 TCGATCTATCCCTCCTTCTGT 57.114 47.619 0.00 0.00 0.00 3.41
3955 9973 4.186077 TCGATCTATCCCTCCTTCTGTT 57.814 45.455 0.00 0.00 0.00 3.16
3956 9974 4.547671 TCGATCTATCCCTCCTTCTGTTT 58.452 43.478 0.00 0.00 0.00 2.83
3957 9975 4.585162 TCGATCTATCCCTCCTTCTGTTTC 59.415 45.833 0.00 0.00 0.00 2.78
3958 9976 4.586841 CGATCTATCCCTCCTTCTGTTTCT 59.413 45.833 0.00 0.00 0.00 2.52
3959 9977 5.069781 CGATCTATCCCTCCTTCTGTTTCTT 59.930 44.000 0.00 0.00 0.00 2.52
3960 9978 6.407525 CGATCTATCCCTCCTTCTGTTTCTTT 60.408 42.308 0.00 0.00 0.00 2.52
3961 9979 6.301169 TCTATCCCTCCTTCTGTTTCTTTC 57.699 41.667 0.00 0.00 0.00 2.62
3962 9980 3.790089 TCCCTCCTTCTGTTTCTTTCC 57.210 47.619 0.00 0.00 0.00 3.13
3963 9981 2.375509 TCCCTCCTTCTGTTTCTTTCCC 59.624 50.000 0.00 0.00 0.00 3.97
3964 9982 2.555448 CCCTCCTTCTGTTTCTTTCCCC 60.555 54.545 0.00 0.00 0.00 4.81
3965 9983 2.108250 CCTCCTTCTGTTTCTTTCCCCA 59.892 50.000 0.00 0.00 0.00 4.96
3966 9984 3.149981 CTCCTTCTGTTTCTTTCCCCAC 58.850 50.000 0.00 0.00 0.00 4.61
3967 9985 2.158519 TCCTTCTGTTTCTTTCCCCACC 60.159 50.000 0.00 0.00 0.00 4.61
3968 9986 2.424234 CCTTCTGTTTCTTTCCCCACCA 60.424 50.000 0.00 0.00 0.00 4.17
3969 9987 3.295973 CTTCTGTTTCTTTCCCCACCAA 58.704 45.455 0.00 0.00 0.00 3.67
3970 9988 2.944129 TCTGTTTCTTTCCCCACCAAG 58.056 47.619 0.00 0.00 0.00 3.61
3971 9989 1.341209 CTGTTTCTTTCCCCACCAAGC 59.659 52.381 0.00 0.00 0.00 4.01
3972 9990 1.063266 TGTTTCTTTCCCCACCAAGCT 60.063 47.619 0.00 0.00 0.00 3.74
3973 9991 1.613925 GTTTCTTTCCCCACCAAGCTC 59.386 52.381 0.00 0.00 0.00 4.09
3974 9992 1.149101 TTCTTTCCCCACCAAGCTCT 58.851 50.000 0.00 0.00 0.00 4.09
3975 9993 1.149101 TCTTTCCCCACCAAGCTCTT 58.851 50.000 0.00 0.00 0.00 2.85
3976 9994 1.073923 TCTTTCCCCACCAAGCTCTTC 59.926 52.381 0.00 0.00 0.00 2.87
3977 9995 1.074566 CTTTCCCCACCAAGCTCTTCT 59.925 52.381 0.00 0.00 0.00 2.85
3978 9996 0.693049 TTCCCCACCAAGCTCTTCTC 59.307 55.000 0.00 0.00 0.00 2.87
3979 9997 1.201429 TCCCCACCAAGCTCTTCTCC 61.201 60.000 0.00 0.00 0.00 3.71
3980 9998 1.204113 CCCCACCAAGCTCTTCTCCT 61.204 60.000 0.00 0.00 0.00 3.69
3981 9999 0.695347 CCCACCAAGCTCTTCTCCTT 59.305 55.000 0.00 0.00 0.00 3.36
3982 10000 1.074566 CCCACCAAGCTCTTCTCCTTT 59.925 52.381 0.00 0.00 0.00 3.11
3983 10001 2.431454 CCACCAAGCTCTTCTCCTTTC 58.569 52.381 0.00 0.00 0.00 2.62
3984 10002 2.039613 CCACCAAGCTCTTCTCCTTTCT 59.960 50.000 0.00 0.00 0.00 2.52
3985 10003 3.333804 CACCAAGCTCTTCTCCTTTCTC 58.666 50.000 0.00 0.00 0.00 2.87
3986 10004 2.304470 ACCAAGCTCTTCTCCTTTCTCC 59.696 50.000 0.00 0.00 0.00 3.71
3987 10005 2.615869 CAAGCTCTTCTCCTTTCTCCG 58.384 52.381 0.00 0.00 0.00 4.63
3988 10006 0.534873 AGCTCTTCTCCTTTCTCCGC 59.465 55.000 0.00 0.00 0.00 5.54
3989 10007 0.461163 GCTCTTCTCCTTTCTCCGCC 60.461 60.000 0.00 0.00 0.00 6.13
3990 10008 0.898320 CTCTTCTCCTTTCTCCGCCA 59.102 55.000 0.00 0.00 0.00 5.69
3991 10009 1.484240 CTCTTCTCCTTTCTCCGCCAT 59.516 52.381 0.00 0.00 0.00 4.40
3992 10010 1.208052 TCTTCTCCTTTCTCCGCCATG 59.792 52.381 0.00 0.00 0.00 3.66
3993 10011 0.253044 TTCTCCTTTCTCCGCCATGG 59.747 55.000 7.63 7.63 40.09 3.66
3994 10012 1.821332 CTCCTTTCTCCGCCATGGC 60.821 63.158 27.67 27.67 37.80 4.40
3995 10013 2.830370 CCTTTCTCCGCCATGGCC 60.830 66.667 30.79 13.37 37.80 5.36
3996 10014 2.045045 CTTTCTCCGCCATGGCCA 60.045 61.111 30.79 16.63 37.80 5.36
3997 10015 2.361104 TTTCTCCGCCATGGCCAC 60.361 61.111 30.79 4.28 37.80 5.01
3998 10016 3.936772 TTTCTCCGCCATGGCCACC 62.937 63.158 30.79 3.87 37.80 4.61
4006 10024 4.298261 CATGGCCACCACCACCCA 62.298 66.667 8.16 0.00 44.17 4.51
4007 10025 4.299796 ATGGCCACCACCACCCAC 62.300 66.667 8.16 0.00 44.17 4.61
4417 10435 2.168054 ATCGCAACTAACAACCGCC 58.832 52.632 0.00 0.00 0.00 6.13
4418 10436 0.604243 ATCGCAACTAACAACCGCCA 60.604 50.000 0.00 0.00 0.00 5.69
4419 10437 1.082366 CGCAACTAACAACCGCCAC 60.082 57.895 0.00 0.00 0.00 5.01
4420 10438 1.082366 GCAACTAACAACCGCCACG 60.082 57.895 0.00 0.00 0.00 4.94
4431 10449 4.742201 CGCCACGGTGGAGACAGG 62.742 72.222 30.65 7.73 44.46 4.00
4432 10450 3.311110 GCCACGGTGGAGACAGGA 61.311 66.667 30.65 0.00 44.46 3.86
4433 10451 2.879233 GCCACGGTGGAGACAGGAA 61.879 63.158 30.65 0.00 44.46 3.36
4434 10452 1.752198 CCACGGTGGAGACAGGAAA 59.248 57.895 22.77 0.00 44.46 3.13
4435 10453 0.107831 CCACGGTGGAGACAGGAAAA 59.892 55.000 22.77 0.00 44.46 2.29
4436 10454 1.226746 CACGGTGGAGACAGGAAAAC 58.773 55.000 0.00 0.00 44.46 2.43
4437 10455 1.129058 ACGGTGGAGACAGGAAAACT 58.871 50.000 0.00 0.00 44.46 2.66
4438 10456 1.070289 ACGGTGGAGACAGGAAAACTC 59.930 52.381 0.00 0.00 44.46 3.01
4443 10461 2.772287 GGAGACAGGAAAACTCCAGTG 58.228 52.381 0.00 0.00 46.42 3.66
4444 10462 2.147150 GAGACAGGAAAACTCCAGTGC 58.853 52.381 0.00 0.00 29.26 4.40
4445 10463 1.771255 AGACAGGAAAACTCCAGTGCT 59.229 47.619 0.00 0.00 29.26 4.40
4446 10464 1.876156 GACAGGAAAACTCCAGTGCTG 59.124 52.381 0.00 0.00 36.83 4.41
4447 10465 0.595095 CAGGAAAACTCCAGTGCTGC 59.405 55.000 0.00 0.00 0.00 5.25
4448 10466 0.183492 AGGAAAACTCCAGTGCTGCA 59.817 50.000 0.00 0.00 0.00 4.41
4449 10467 1.032014 GGAAAACTCCAGTGCTGCAA 58.968 50.000 2.77 0.00 0.00 4.08
4450 10468 1.615392 GGAAAACTCCAGTGCTGCAAT 59.385 47.619 2.77 0.00 0.00 3.56
4451 10469 2.819608 GGAAAACTCCAGTGCTGCAATA 59.180 45.455 2.77 0.00 0.00 1.90
4452 10470 3.119708 GGAAAACTCCAGTGCTGCAATAG 60.120 47.826 2.77 0.40 0.00 1.73
4453 10471 2.119801 AACTCCAGTGCTGCAATAGG 57.880 50.000 2.77 8.04 0.00 2.57
4454 10472 1.279496 ACTCCAGTGCTGCAATAGGA 58.721 50.000 16.29 16.29 0.00 2.94
4455 10473 1.842562 ACTCCAGTGCTGCAATAGGAT 59.157 47.619 17.11 8.60 0.00 3.24
4456 10474 2.240667 ACTCCAGTGCTGCAATAGGATT 59.759 45.455 17.11 11.50 0.00 3.01
4457 10475 3.285484 CTCCAGTGCTGCAATAGGATTT 58.715 45.455 17.11 0.00 0.00 2.17
4458 10476 3.698040 CTCCAGTGCTGCAATAGGATTTT 59.302 43.478 17.11 0.00 0.00 1.82
4459 10477 4.088634 TCCAGTGCTGCAATAGGATTTTT 58.911 39.130 2.77 0.00 0.00 1.94
4478 10496 2.265589 TTTTCTTGGAACCGGAGTCC 57.734 50.000 9.46 15.53 0.00 3.85
4479 10497 1.133363 TTTCTTGGAACCGGAGTCCA 58.867 50.000 22.63 22.63 0.00 4.02
4480 10498 1.133363 TTCTTGGAACCGGAGTCCAA 58.867 50.000 29.95 29.95 40.77 3.53
4482 10500 1.758592 TTGGAACCGGAGTCCAAGG 59.241 57.895 29.05 5.73 38.46 3.61
4483 10501 0.765135 TTGGAACCGGAGTCCAAGGA 60.765 55.000 29.05 15.52 38.46 3.36
4484 10502 0.546747 TGGAACCGGAGTCCAAGGAT 60.547 55.000 23.75 0.00 0.00 3.24
4485 10503 0.107654 GGAACCGGAGTCCAAGGATG 60.108 60.000 19.97 0.00 0.00 3.51
4486 10504 0.744771 GAACCGGAGTCCAAGGATGC 60.745 60.000 9.46 0.00 0.00 3.91
4487 10505 1.201429 AACCGGAGTCCAAGGATGCT 61.201 55.000 9.46 0.00 0.00 3.79
4488 10506 1.144936 CCGGAGTCCAAGGATGCTC 59.855 63.158 10.49 0.00 0.00 4.26
4489 10507 1.227089 CGGAGTCCAAGGATGCTCG 60.227 63.158 10.49 0.00 0.00 5.03
4490 10508 1.667154 CGGAGTCCAAGGATGCTCGA 61.667 60.000 10.49 0.00 0.00 4.04
4491 10509 0.537188 GGAGTCCAAGGATGCTCGAA 59.463 55.000 3.60 0.00 0.00 3.71
4492 10510 1.646189 GAGTCCAAGGATGCTCGAAC 58.354 55.000 0.00 0.00 0.00 3.95
4493 10511 0.250513 AGTCCAAGGATGCTCGAACC 59.749 55.000 0.00 0.00 0.00 3.62
4494 10512 0.036388 GTCCAAGGATGCTCGAACCA 60.036 55.000 0.00 0.00 0.00 3.67
4495 10513 0.250234 TCCAAGGATGCTCGAACCAG 59.750 55.000 0.00 0.00 0.00 4.00
4496 10514 0.250234 CCAAGGATGCTCGAACCAGA 59.750 55.000 0.00 0.00 0.00 3.86
4497 10515 1.649664 CAAGGATGCTCGAACCAGAG 58.350 55.000 0.00 0.00 41.03 3.35
4498 10516 0.539051 AAGGATGCTCGAACCAGAGG 59.461 55.000 0.00 0.00 38.63 3.69
4499 10517 0.616111 AGGATGCTCGAACCAGAGGT 60.616 55.000 0.00 0.00 38.63 3.85
4501 10519 1.363744 GATGCTCGAACCAGAGGTTG 58.636 55.000 6.10 0.00 46.95 3.77
4502 10520 0.036010 ATGCTCGAACCAGAGGTTGG 60.036 55.000 6.10 5.36 46.95 3.77
4515 10533 2.647297 GTTGGAACCAGCAGCTGC 59.353 61.111 31.53 31.53 42.49 5.25
4516 10534 2.598394 TTGGAACCAGCAGCTGCC 60.598 61.111 34.39 18.67 43.38 4.85
4534 10552 4.415332 GGCCGCGAAGACGACAGA 62.415 66.667 8.23 0.00 42.66 3.41
4535 10553 3.173240 GCCGCGAAGACGACAGAC 61.173 66.667 8.23 0.00 42.66 3.51
4536 10554 2.561885 CCGCGAAGACGACAGACT 59.438 61.111 8.23 0.00 42.66 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.924412 TGTTAATAGACGACCATTAGTCCATTC 59.076 37.037 0.00 0.00 43.08 2.67
3 4 6.567050 GTGTTAATAGACGACCATTAGTCCA 58.433 40.000 0.00 0.00 43.08 4.02
12 13 2.850647 GACTGCGTGTTAATAGACGACC 59.149 50.000 8.35 0.00 43.12 4.79
74 75 2.592194 CGTGTTTGCTAGCTCGTCTAA 58.408 47.619 17.23 0.00 0.00 2.10
79 80 1.130613 GTGCGTGTTTGCTAGCTCG 59.869 57.895 17.23 13.05 35.36 5.03
84 85 1.658596 GATCATCGTGCGTGTTTGCTA 59.341 47.619 0.00 0.00 35.36 3.49
86 87 0.853224 CGATCATCGTGCGTGTTTGC 60.853 55.000 0.00 0.00 34.72 3.68
89 90 1.200483 GATCGATCATCGTGCGTGTT 58.800 50.000 20.52 0.00 41.35 3.32
90 91 0.100503 TGATCGATCATCGTGCGTGT 59.899 50.000 23.99 0.00 41.35 4.49
95 100 5.273944 TGTTTACTCTGATCGATCATCGTG 58.726 41.667 27.43 18.84 41.35 4.35
111 116 3.378339 CACGTCCGTCTTTCTGTTTACT 58.622 45.455 0.00 0.00 0.00 2.24
118 123 2.342648 GGCCACGTCCGTCTTTCT 59.657 61.111 0.00 0.00 0.00 2.52
179 196 3.941836 GCGTTCGCTAGCATGGGC 61.942 66.667 16.45 8.74 41.61 5.36
200 217 2.568090 CTTTGCATGACGGCACCC 59.432 61.111 0.00 0.00 44.86 4.61
327 344 2.509336 CATGTCTGGACGACCGCC 60.509 66.667 0.00 0.00 42.13 6.13
388 409 5.876357 TGGCTTTTTAGAACCAGATAGTGT 58.124 37.500 0.00 0.00 0.00 3.55
401 422 1.004745 TCTCCCTGGCTGGCTTTTTAG 59.995 52.381 4.64 0.00 0.00 1.85
582 607 0.251787 GGGCCTCAATCTTTGTGGGT 60.252 55.000 0.84 0.00 42.92 4.51
583 608 0.251742 TGGGCCTCAATCTTTGTGGG 60.252 55.000 4.53 4.72 42.92 4.61
589 614 1.041447 GCTGCATGGGCCTCAATCTT 61.041 55.000 4.53 0.00 40.13 2.40
601 626 0.754217 ATTAGGTGGCTGGCTGCATG 60.754 55.000 18.32 0.00 45.15 4.06
602 627 0.032813 AATTAGGTGGCTGGCTGCAT 60.033 50.000 18.32 3.60 45.15 3.96
603 628 0.966875 CAATTAGGTGGCTGGCTGCA 60.967 55.000 18.32 1.75 45.15 4.41
604 629 0.967380 ACAATTAGGTGGCTGGCTGC 60.967 55.000 7.96 7.96 41.94 5.25
800 850 3.253188 GCATGCTTTTCCGCCATTATAGA 59.747 43.478 11.37 0.00 0.00 1.98
857 910 1.991813 TGATCACCTTCCATTCCACCA 59.008 47.619 0.00 0.00 0.00 4.17
986 4237 4.498520 CCATCACGCTCGTCGCCT 62.499 66.667 0.00 0.00 43.23 5.52
1434 4713 7.719483 TGAAAACTGATGAATCTGCTCTTTTT 58.281 30.769 0.00 0.00 0.00 1.94
1435 4714 7.281040 TGAAAACTGATGAATCTGCTCTTTT 57.719 32.000 0.00 0.00 0.00 2.27
1436 4715 6.889301 TGAAAACTGATGAATCTGCTCTTT 57.111 33.333 0.00 0.00 0.00 2.52
1437 4716 8.571461 TTATGAAAACTGATGAATCTGCTCTT 57.429 30.769 0.00 0.00 0.00 2.85
1438 4717 8.571461 TTTATGAAAACTGATGAATCTGCTCT 57.429 30.769 0.00 0.00 0.00 4.09
1439 4718 9.630098 TTTTTATGAAAACTGATGAATCTGCTC 57.370 29.630 0.00 0.00 30.07 4.26
1497 4916 0.248743 CCAATAGCGGTGCATGCAAG 60.249 55.000 24.58 20.21 33.85 4.01
1525 4946 6.705381 CCCACACAAAAGAAAATTAGCATGAA 59.295 34.615 0.00 0.00 0.00 2.57
1538 4959 5.659463 CATGAGAAAAACCCACACAAAAGA 58.341 37.500 0.00 0.00 0.00 2.52
1550 4971 9.248291 TGAACTTCAAAATAGCATGAGAAAAAC 57.752 29.630 0.00 0.00 0.00 2.43
1597 5135 6.620877 ATCTGGTTGTCCTAATCTGTTACA 57.379 37.500 0.00 0.00 34.23 2.41
1601 5142 6.106673 CGTAAATCTGGTTGTCCTAATCTGT 58.893 40.000 0.00 0.00 34.23 3.41
1610 5151 3.660865 AGTGTCCGTAAATCTGGTTGTC 58.339 45.455 0.00 0.00 0.00 3.18
1625 5166 6.376018 CCTATAGCTAGATACCTTGAGTGTCC 59.624 46.154 0.00 0.00 37.31 4.02
1983 7704 5.532406 AGCTTGTATCAGCAGTTCTTTTTCA 59.468 36.000 0.00 0.00 42.84 2.69
2272 8108 7.512992 TGTCAATGACCCAACCAAAAATAAAT 58.487 30.769 11.24 0.00 0.00 1.40
2273 8109 6.889198 TGTCAATGACCCAACCAAAAATAAA 58.111 32.000 11.24 0.00 0.00 1.40
2276 8112 5.307204 CATGTCAATGACCCAACCAAAAAT 58.693 37.500 11.24 0.00 35.67 1.82
2282 8134 0.532115 GCCATGTCAATGACCCAACC 59.468 55.000 11.24 0.00 35.67 3.77
2303 8155 1.181098 ACCAACCAATGCCAGTCTGC 61.181 55.000 0.00 0.00 0.00 4.26
2304 8156 1.270550 GAACCAACCAATGCCAGTCTG 59.729 52.381 0.00 0.00 0.00 3.51
2322 8175 3.230134 CCAATTTTGTCACTCCCTGGAA 58.770 45.455 0.00 0.00 0.00 3.53
2618 8495 2.197577 GTGCAGAAGGAGAGTAATCGC 58.802 52.381 0.00 0.00 0.00 4.58
2619 8496 2.159366 ACGTGCAGAAGGAGAGTAATCG 60.159 50.000 0.00 0.00 0.00 3.34
2710 8615 3.591527 TGGGAAGAACCTGGACATACAAT 59.408 43.478 0.00 0.00 38.98 2.71
3686 9702 1.416373 GACCGTTGGTCGAGAAACTC 58.584 55.000 0.00 0.00 43.14 3.01
3798 9816 3.181500 GCCGGTCAGAAATGTTTACCATC 60.181 47.826 1.90 0.00 31.75 3.51
3801 9819 1.129811 CGCCGGTCAGAAATGTTTACC 59.870 52.381 1.90 0.00 0.00 2.85
3802 9820 1.129811 CCGCCGGTCAGAAATGTTTAC 59.870 52.381 1.90 0.00 0.00 2.01
3803 9821 1.002201 TCCGCCGGTCAGAAATGTTTA 59.998 47.619 1.63 0.00 0.00 2.01
3804 9822 0.250553 TCCGCCGGTCAGAAATGTTT 60.251 50.000 1.63 0.00 0.00 2.83
3805 9823 0.953960 GTCCGCCGGTCAGAAATGTT 60.954 55.000 1.63 0.00 0.00 2.71
3806 9824 1.375523 GTCCGCCGGTCAGAAATGT 60.376 57.895 1.63 0.00 0.00 2.71
3807 9825 2.106683 GGTCCGCCGGTCAGAAATG 61.107 63.158 1.63 0.00 0.00 2.32
3808 9826 2.267961 GGTCCGCCGGTCAGAAAT 59.732 61.111 1.63 0.00 0.00 2.17
3821 9839 2.031465 TCAAGTTTCGGCCGGTCC 59.969 61.111 27.83 13.07 0.00 4.46
3822 9840 2.677979 GCTCAAGTTTCGGCCGGTC 61.678 63.158 27.83 15.72 0.00 4.79
3823 9841 2.668550 GCTCAAGTTTCGGCCGGT 60.669 61.111 27.83 4.67 0.00 5.28
3824 9842 3.431725 GGCTCAAGTTTCGGCCGG 61.432 66.667 27.83 8.07 35.08 6.13
3826 9844 3.431725 CCGGCTCAAGTTTCGGCC 61.432 66.667 0.00 0.00 41.02 6.13
3827 9845 2.668550 ACCGGCTCAAGTTTCGGC 60.669 61.111 0.00 0.00 45.65 5.54
3828 9846 2.380410 CGACCGGCTCAAGTTTCGG 61.380 63.158 0.00 0.00 46.95 4.30
3829 9847 3.011760 GCGACCGGCTCAAGTTTCG 62.012 63.158 0.00 1.05 39.11 3.46
3830 9848 2.861006 GCGACCGGCTCAAGTTTC 59.139 61.111 0.00 0.00 39.11 2.78
3831 9849 3.041940 CGCGACCGGCTCAAGTTT 61.042 61.111 0.00 0.00 40.44 2.66
3850 9868 0.844503 CTCTTTATCGTACGCACCGC 59.155 55.000 11.24 0.00 0.00 5.68
3851 9869 2.031314 TCTCTCTTTATCGTACGCACCG 59.969 50.000 11.24 0.00 0.00 4.94
3852 9870 3.687572 TCTCTCTTTATCGTACGCACC 57.312 47.619 11.24 0.00 0.00 5.01
3853 9871 3.901290 CGATCTCTCTTTATCGTACGCAC 59.099 47.826 11.24 0.00 40.01 5.34
3854 9872 3.805971 TCGATCTCTCTTTATCGTACGCA 59.194 43.478 11.24 0.00 44.11 5.24
3855 9873 4.386716 TCGATCTCTCTTTATCGTACGC 57.613 45.455 11.24 0.00 44.11 4.42
3857 9875 4.608058 GCGTTCGATCTCTCTTTATCGTAC 59.392 45.833 0.00 0.00 44.11 3.67
3858 9876 4.510711 AGCGTTCGATCTCTCTTTATCGTA 59.489 41.667 0.00 0.00 44.11 3.43
3859 9877 3.312973 AGCGTTCGATCTCTCTTTATCGT 59.687 43.478 0.00 0.00 44.11 3.73
3860 9878 3.879427 AGCGTTCGATCTCTCTTTATCG 58.121 45.455 0.00 0.00 44.88 2.92
3879 9897 1.476007 ATATGGGGAGAGCACCGAGC 61.476 60.000 0.00 0.00 42.06 5.03
3880 9898 0.605589 GATATGGGGAGAGCACCGAG 59.394 60.000 0.00 0.00 42.06 4.63
3881 9899 0.105709 TGATATGGGGAGAGCACCGA 60.106 55.000 0.00 0.00 42.06 4.69
3882 9900 0.034059 GTGATATGGGGAGAGCACCG 59.966 60.000 0.00 0.00 42.06 4.94
3883 9901 1.131638 TGTGATATGGGGAGAGCACC 58.868 55.000 0.00 0.00 38.42 5.01
3884 9902 2.092968 TGTTGTGATATGGGGAGAGCAC 60.093 50.000 0.00 0.00 0.00 4.40
3885 9903 2.092968 GTGTTGTGATATGGGGAGAGCA 60.093 50.000 0.00 0.00 0.00 4.26
3886 9904 2.171448 AGTGTTGTGATATGGGGAGAGC 59.829 50.000 0.00 0.00 0.00 4.09
3887 9905 3.491619 CGAGTGTTGTGATATGGGGAGAG 60.492 52.174 0.00 0.00 0.00 3.20
3888 9906 2.430694 CGAGTGTTGTGATATGGGGAGA 59.569 50.000 0.00 0.00 0.00 3.71
3889 9907 2.483714 CCGAGTGTTGTGATATGGGGAG 60.484 54.545 0.00 0.00 0.00 4.30
3890 9908 1.484653 CCGAGTGTTGTGATATGGGGA 59.515 52.381 0.00 0.00 0.00 4.81
3891 9909 1.209504 ACCGAGTGTTGTGATATGGGG 59.790 52.381 0.00 0.00 0.00 4.96
3892 9910 2.279741 CACCGAGTGTTGTGATATGGG 58.720 52.381 0.00 0.00 34.37 4.00
3893 9911 1.665679 GCACCGAGTGTTGTGATATGG 59.334 52.381 6.02 0.00 35.75 2.74
3894 9912 2.621338 AGCACCGAGTGTTGTGATATG 58.379 47.619 6.02 0.00 35.75 1.78
3895 9913 4.501571 GGATAGCACCGAGTGTTGTGATAT 60.502 45.833 0.55 0.55 44.26 1.63
3896 9914 3.181479 GGATAGCACCGAGTGTTGTGATA 60.181 47.826 6.02 0.00 37.70 2.15
3897 9915 2.418746 GGATAGCACCGAGTGTTGTGAT 60.419 50.000 6.02 0.00 35.75 3.06
3898 9916 1.067142 GGATAGCACCGAGTGTTGTGA 60.067 52.381 6.02 0.00 35.75 3.58
3899 9917 1.066858 AGGATAGCACCGAGTGTTGTG 60.067 52.381 6.02 0.00 35.75 3.33
3900 9918 1.267121 AGGATAGCACCGAGTGTTGT 58.733 50.000 6.02 0.00 35.75 3.32
3901 9919 2.386661 AAGGATAGCACCGAGTGTTG 57.613 50.000 6.02 0.00 35.75 3.33
3902 9920 2.167900 GGTAAGGATAGCACCGAGTGTT 59.832 50.000 6.02 2.96 35.75 3.32
3903 9921 1.755380 GGTAAGGATAGCACCGAGTGT 59.245 52.381 6.02 0.00 35.75 3.55
3904 9922 2.032620 AGGTAAGGATAGCACCGAGTG 58.967 52.381 0.25 0.25 37.42 3.51
3905 9923 2.456073 AGGTAAGGATAGCACCGAGT 57.544 50.000 0.00 0.00 37.42 4.18
3906 9924 3.444388 GGATAGGTAAGGATAGCACCGAG 59.556 52.174 0.00 0.00 37.42 4.63
3907 9925 3.181426 TGGATAGGTAAGGATAGCACCGA 60.181 47.826 0.00 0.00 37.42 4.69
3908 9926 3.162666 TGGATAGGTAAGGATAGCACCG 58.837 50.000 0.00 0.00 37.42 4.94
3909 9927 4.624125 GCATGGATAGGTAAGGATAGCACC 60.624 50.000 0.00 0.00 31.82 5.01
3910 9928 4.020218 TGCATGGATAGGTAAGGATAGCAC 60.020 45.833 0.00 0.00 31.82 4.40
3911 9929 4.167319 TGCATGGATAGGTAAGGATAGCA 58.833 43.478 0.00 0.00 31.82 3.49
3912 9930 4.826274 TGCATGGATAGGTAAGGATAGC 57.174 45.455 0.00 0.00 0.00 2.97
3913 9931 5.360999 TCGATGCATGGATAGGTAAGGATAG 59.639 44.000 2.46 0.00 0.00 2.08
3914 9932 5.269189 TCGATGCATGGATAGGTAAGGATA 58.731 41.667 2.46 0.00 0.00 2.59
3915 9933 4.096681 TCGATGCATGGATAGGTAAGGAT 58.903 43.478 2.46 0.00 0.00 3.24
3916 9934 3.506398 TCGATGCATGGATAGGTAAGGA 58.494 45.455 2.46 0.00 0.00 3.36
3917 9935 3.961480 TCGATGCATGGATAGGTAAGG 57.039 47.619 2.46 0.00 0.00 2.69
3918 9936 5.336150 AGATCGATGCATGGATAGGTAAG 57.664 43.478 22.32 0.00 0.00 2.34
3919 9937 6.040955 GGATAGATCGATGCATGGATAGGTAA 59.959 42.308 22.32 8.34 0.00 2.85
3920 9938 5.536538 GGATAGATCGATGCATGGATAGGTA 59.463 44.000 22.32 14.73 0.00 3.08
3921 9939 4.343526 GGATAGATCGATGCATGGATAGGT 59.656 45.833 22.32 13.24 0.00 3.08
3922 9940 4.262377 GGGATAGATCGATGCATGGATAGG 60.262 50.000 22.32 0.00 0.00 2.57
3923 9941 4.588106 AGGGATAGATCGATGCATGGATAG 59.412 45.833 22.32 0.00 0.00 2.08
3924 9942 4.550669 AGGGATAGATCGATGCATGGATA 58.449 43.478 22.32 10.01 0.00 2.59
3925 9943 3.382278 AGGGATAGATCGATGCATGGAT 58.618 45.455 22.45 22.45 0.00 3.41
3926 9944 2.762887 GAGGGATAGATCGATGCATGGA 59.237 50.000 14.13 14.13 0.00 3.41
3927 9945 2.158986 GGAGGGATAGATCGATGCATGG 60.159 54.545 2.46 2.00 0.00 3.66
3928 9946 2.765135 AGGAGGGATAGATCGATGCATG 59.235 50.000 2.46 0.00 0.00 4.06
3929 9947 3.113191 AGGAGGGATAGATCGATGCAT 57.887 47.619 0.54 0.00 0.00 3.96
3930 9948 2.612285 AGGAGGGATAGATCGATGCA 57.388 50.000 0.54 0.00 0.00 3.96
3931 9949 3.096092 AGAAGGAGGGATAGATCGATGC 58.904 50.000 0.54 0.00 0.00 3.91
3932 9950 4.085733 ACAGAAGGAGGGATAGATCGATG 58.914 47.826 0.54 0.00 0.00 3.84
3933 9951 4.396357 ACAGAAGGAGGGATAGATCGAT 57.604 45.455 0.00 0.00 0.00 3.59
3934 9952 3.885976 ACAGAAGGAGGGATAGATCGA 57.114 47.619 0.00 0.00 0.00 3.59
3935 9953 4.586841 AGAAACAGAAGGAGGGATAGATCG 59.413 45.833 0.00 0.00 0.00 3.69
3936 9954 6.493189 AAGAAACAGAAGGAGGGATAGATC 57.507 41.667 0.00 0.00 0.00 2.75
3937 9955 6.126623 GGAAAGAAACAGAAGGAGGGATAGAT 60.127 42.308 0.00 0.00 0.00 1.98
3938 9956 5.189934 GGAAAGAAACAGAAGGAGGGATAGA 59.810 44.000 0.00 0.00 0.00 1.98
3939 9957 5.432645 GGAAAGAAACAGAAGGAGGGATAG 58.567 45.833 0.00 0.00 0.00 2.08
3940 9958 4.227527 GGGAAAGAAACAGAAGGAGGGATA 59.772 45.833 0.00 0.00 0.00 2.59
3941 9959 3.010696 GGGAAAGAAACAGAAGGAGGGAT 59.989 47.826 0.00 0.00 0.00 3.85
3942 9960 2.375509 GGGAAAGAAACAGAAGGAGGGA 59.624 50.000 0.00 0.00 0.00 4.20
3943 9961 2.555448 GGGGAAAGAAACAGAAGGAGGG 60.555 54.545 0.00 0.00 0.00 4.30
3944 9962 2.108250 TGGGGAAAGAAACAGAAGGAGG 59.892 50.000 0.00 0.00 0.00 4.30
3945 9963 3.149981 GTGGGGAAAGAAACAGAAGGAG 58.850 50.000 0.00 0.00 0.00 3.69
3946 9964 2.158519 GGTGGGGAAAGAAACAGAAGGA 60.159 50.000 0.00 0.00 0.00 3.36
3947 9965 2.239400 GGTGGGGAAAGAAACAGAAGG 58.761 52.381 0.00 0.00 0.00 3.46
3948 9966 2.944129 TGGTGGGGAAAGAAACAGAAG 58.056 47.619 0.00 0.00 0.00 2.85
3949 9967 3.295973 CTTGGTGGGGAAAGAAACAGAA 58.704 45.455 0.00 0.00 0.00 3.02
3950 9968 2.944129 CTTGGTGGGGAAAGAAACAGA 58.056 47.619 0.00 0.00 0.00 3.41
3951 9969 1.341209 GCTTGGTGGGGAAAGAAACAG 59.659 52.381 0.00 0.00 0.00 3.16
3952 9970 1.063266 AGCTTGGTGGGGAAAGAAACA 60.063 47.619 0.00 0.00 0.00 2.83
3953 9971 1.613925 GAGCTTGGTGGGGAAAGAAAC 59.386 52.381 0.00 0.00 0.00 2.78
3954 9972 1.499007 AGAGCTTGGTGGGGAAAGAAA 59.501 47.619 0.00 0.00 0.00 2.52
3955 9973 1.149101 AGAGCTTGGTGGGGAAAGAA 58.851 50.000 0.00 0.00 0.00 2.52
3956 9974 1.073923 GAAGAGCTTGGTGGGGAAAGA 59.926 52.381 0.00 0.00 0.00 2.52
3957 9975 1.074566 AGAAGAGCTTGGTGGGGAAAG 59.925 52.381 0.00 0.00 0.00 2.62
3958 9976 1.073923 GAGAAGAGCTTGGTGGGGAAA 59.926 52.381 0.00 0.00 0.00 3.13
3959 9977 0.693049 GAGAAGAGCTTGGTGGGGAA 59.307 55.000 0.00 0.00 0.00 3.97
3960 9978 1.201429 GGAGAAGAGCTTGGTGGGGA 61.201 60.000 0.00 0.00 0.00 4.81
3961 9979 1.204113 AGGAGAAGAGCTTGGTGGGG 61.204 60.000 0.00 0.00 0.00 4.96
3962 9980 0.695347 AAGGAGAAGAGCTTGGTGGG 59.305 55.000 0.00 0.00 0.00 4.61
3963 9981 2.039613 AGAAAGGAGAAGAGCTTGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
3964 9982 3.333804 GAGAAAGGAGAAGAGCTTGGTG 58.666 50.000 0.00 0.00 0.00 4.17
3965 9983 2.304470 GGAGAAAGGAGAAGAGCTTGGT 59.696 50.000 0.00 0.00 0.00 3.67
3966 9984 2.676463 CGGAGAAAGGAGAAGAGCTTGG 60.676 54.545 0.00 0.00 0.00 3.61
3967 9985 2.615869 CGGAGAAAGGAGAAGAGCTTG 58.384 52.381 0.00 0.00 0.00 4.01
3968 9986 1.066502 GCGGAGAAAGGAGAAGAGCTT 60.067 52.381 0.00 0.00 0.00 3.74
3969 9987 0.534873 GCGGAGAAAGGAGAAGAGCT 59.465 55.000 0.00 0.00 0.00 4.09
3970 9988 0.461163 GGCGGAGAAAGGAGAAGAGC 60.461 60.000 0.00 0.00 0.00 4.09
3971 9989 0.898320 TGGCGGAGAAAGGAGAAGAG 59.102 55.000 0.00 0.00 0.00 2.85
3972 9990 1.208052 CATGGCGGAGAAAGGAGAAGA 59.792 52.381 0.00 0.00 0.00 2.87
3973 9991 1.661341 CATGGCGGAGAAAGGAGAAG 58.339 55.000 0.00 0.00 0.00 2.85
3974 9992 0.253044 CCATGGCGGAGAAAGGAGAA 59.747 55.000 0.00 0.00 36.56 2.87
3975 9993 1.907739 CCATGGCGGAGAAAGGAGA 59.092 57.895 0.00 0.00 36.56 3.71
3976 9994 1.821332 GCCATGGCGGAGAAAGGAG 60.821 63.158 23.48 0.00 36.56 3.69
3977 9995 2.272146 GCCATGGCGGAGAAAGGA 59.728 61.111 23.48 0.00 36.56 3.36
3978 9996 2.830370 GGCCATGGCGGAGAAAGG 60.830 66.667 29.90 0.00 43.06 3.11
3979 9997 2.045045 TGGCCATGGCGGAGAAAG 60.045 61.111 29.90 0.00 43.06 2.62
3980 9998 2.361104 GTGGCCATGGCGGAGAAA 60.361 61.111 29.90 8.58 43.06 2.52
3981 9999 4.424711 GGTGGCCATGGCGGAGAA 62.425 66.667 29.90 10.40 43.06 2.87
3989 10007 4.298261 TGGGTGGTGGTGGCCATG 62.298 66.667 9.72 0.00 41.08 3.66
3990 10008 4.299796 GTGGGTGGTGGTGGCCAT 62.300 66.667 9.72 0.00 41.08 4.40
4399 10417 0.604243 TGGCGGTTGTTAGTTGCGAT 60.604 50.000 0.00 0.00 0.00 4.58
4400 10418 1.227586 TGGCGGTTGTTAGTTGCGA 60.228 52.632 0.00 0.00 0.00 5.10
4401 10419 1.082366 GTGGCGGTTGTTAGTTGCG 60.082 57.895 0.00 0.00 0.00 4.85
4402 10420 1.082366 CGTGGCGGTTGTTAGTTGC 60.082 57.895 0.00 0.00 0.00 4.17
4403 10421 1.572447 CCGTGGCGGTTGTTAGTTG 59.428 57.895 0.00 0.00 42.73 3.16
4404 10422 4.052519 CCGTGGCGGTTGTTAGTT 57.947 55.556 0.00 0.00 42.73 2.24
4414 10432 4.742201 CCTGTCTCCACCGTGGCG 62.742 72.222 13.19 6.98 37.47 5.69
4415 10433 2.391724 TTTCCTGTCTCCACCGTGGC 62.392 60.000 13.19 0.00 37.47 5.01
4416 10434 0.107831 TTTTCCTGTCTCCACCGTGG 59.892 55.000 11.73 11.73 39.43 4.94
4417 10435 1.202651 AGTTTTCCTGTCTCCACCGTG 60.203 52.381 0.00 0.00 0.00 4.94
4418 10436 1.070289 GAGTTTTCCTGTCTCCACCGT 59.930 52.381 0.00 0.00 0.00 4.83
4419 10437 1.608283 GGAGTTTTCCTGTCTCCACCG 60.608 57.143 5.69 0.00 44.85 4.94
4420 10438 2.186532 GGAGTTTTCCTGTCTCCACC 57.813 55.000 5.69 0.00 44.85 4.61
4428 10446 0.595095 GCAGCACTGGAGTTTTCCTG 59.405 55.000 0.00 0.00 44.36 3.86
4429 10447 0.183492 TGCAGCACTGGAGTTTTCCT 59.817 50.000 0.00 0.00 44.36 3.36
4430 10448 1.032014 TTGCAGCACTGGAGTTTTCC 58.968 50.000 0.00 0.00 44.31 3.13
4431 10449 3.119708 CCTATTGCAGCACTGGAGTTTTC 60.120 47.826 0.00 0.00 31.08 2.29
4432 10450 2.821969 CCTATTGCAGCACTGGAGTTTT 59.178 45.455 0.00 0.00 31.08 2.43
4433 10451 2.040278 TCCTATTGCAGCACTGGAGTTT 59.960 45.455 0.00 0.00 31.08 2.66
4434 10452 1.630369 TCCTATTGCAGCACTGGAGTT 59.370 47.619 0.00 0.00 31.08 3.01
4435 10453 1.279496 TCCTATTGCAGCACTGGAGT 58.721 50.000 0.00 0.00 31.08 3.85
4436 10454 2.634815 ATCCTATTGCAGCACTGGAG 57.365 50.000 13.61 1.89 31.08 3.86
4437 10455 3.370840 AAATCCTATTGCAGCACTGGA 57.629 42.857 11.34 11.34 0.00 3.86
4438 10456 4.460948 AAAAATCCTATTGCAGCACTGG 57.539 40.909 0.00 0.00 0.00 4.00
4458 10476 2.092321 TGGACTCCGGTTCCAAGAAAAA 60.092 45.455 21.03 1.03 0.00 1.94
4459 10477 1.491332 TGGACTCCGGTTCCAAGAAAA 59.509 47.619 21.03 1.65 0.00 2.29
4460 10478 1.133363 TGGACTCCGGTTCCAAGAAA 58.867 50.000 21.03 2.27 0.00 2.52
4461 10479 1.133363 TTGGACTCCGGTTCCAAGAA 58.867 50.000 26.79 12.73 38.46 2.52
4462 10480 2.842994 TTGGACTCCGGTTCCAAGA 58.157 52.632 26.79 13.31 38.46 3.02
4464 10482 0.765135 TCCTTGGACTCCGGTTCCAA 60.765 55.000 27.87 27.87 40.77 3.53
4465 10483 0.546747 ATCCTTGGACTCCGGTTCCA 60.547 55.000 19.85 19.85 0.00 3.53
4466 10484 0.107654 CATCCTTGGACTCCGGTTCC 60.108 60.000 15.66 15.66 0.00 3.62
4467 10485 0.744771 GCATCCTTGGACTCCGGTTC 60.745 60.000 0.00 0.00 0.00 3.62
4468 10486 1.201429 AGCATCCTTGGACTCCGGTT 61.201 55.000 0.00 0.00 0.00 4.44
4469 10487 1.613630 AGCATCCTTGGACTCCGGT 60.614 57.895 0.00 0.00 0.00 5.28
4470 10488 1.144936 GAGCATCCTTGGACTCCGG 59.855 63.158 0.00 0.00 0.00 5.14
4471 10489 1.227089 CGAGCATCCTTGGACTCCG 60.227 63.158 0.00 0.00 0.00 4.63
4472 10490 0.537188 TTCGAGCATCCTTGGACTCC 59.463 55.000 0.00 0.00 0.00 3.85
4473 10491 1.646189 GTTCGAGCATCCTTGGACTC 58.354 55.000 0.00 0.00 29.46 3.36
4474 10492 0.250513 GGTTCGAGCATCCTTGGACT 59.749 55.000 0.53 0.00 32.30 3.85
4475 10493 0.036388 TGGTTCGAGCATCCTTGGAC 60.036 55.000 0.53 0.00 31.03 4.02
4476 10494 0.250234 CTGGTTCGAGCATCCTTGGA 59.750 55.000 0.53 0.00 0.00 3.53
4477 10495 0.250234 TCTGGTTCGAGCATCCTTGG 59.750 55.000 0.53 0.00 0.00 3.61
4478 10496 1.649664 CTCTGGTTCGAGCATCCTTG 58.350 55.000 0.53 0.00 0.00 3.61
4479 10497 0.539051 CCTCTGGTTCGAGCATCCTT 59.461 55.000 0.53 0.00 0.00 3.36
4480 10498 0.616111 ACCTCTGGTTCGAGCATCCT 60.616 55.000 0.53 0.00 27.29 3.24
4481 10499 0.250513 AACCTCTGGTTCGAGCATCC 59.749 55.000 0.53 0.00 43.05 3.51
4482 10500 1.363744 CAACCTCTGGTTCGAGCATC 58.636 55.000 0.53 0.00 43.05 3.91
4483 10501 0.036010 CCAACCTCTGGTTCGAGCAT 60.036 55.000 0.53 0.00 43.05 3.79
4484 10502 1.118965 TCCAACCTCTGGTTCGAGCA 61.119 55.000 0.53 0.00 43.05 4.26
4485 10503 0.034896 TTCCAACCTCTGGTTCGAGC 59.965 55.000 0.00 0.00 43.05 5.03
4486 10504 1.608283 GGTTCCAACCTCTGGTTCGAG 60.608 57.143 0.83 0.00 43.05 4.04
4487 10505 0.395312 GGTTCCAACCTCTGGTTCGA 59.605 55.000 0.83 0.00 43.05 3.71
4488 10506 0.107831 TGGTTCCAACCTCTGGTTCG 59.892 55.000 9.88 0.00 43.05 3.95
4489 10507 1.897560 CTGGTTCCAACCTCTGGTTC 58.102 55.000 9.88 0.00 43.05 3.62
4498 10516 2.647297 GCAGCTGCTGGTTCCAAC 59.353 61.111 31.33 8.48 38.21 3.77
4499 10517 2.598394 GGCAGCTGCTGGTTCCAA 60.598 61.111 35.82 0.00 41.70 3.53
4517 10535 4.415332 TCTGTCGTCTTCGCGGCC 62.415 66.667 6.13 0.00 35.36 6.13
4518 10536 3.173240 GTCTGTCGTCTTCGCGGC 61.173 66.667 6.13 0.00 36.96 6.53
4519 10537 2.561885 AGTCTGTCGTCTTCGCGG 59.438 61.111 6.13 0.00 36.96 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.