Multiple sequence alignment - TraesCS3A01G227000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G227000 chr3A 100.000 7293 0 0 1 7293 424466041 424458749 0.000000e+00 13468.0
1 TraesCS3A01G227000 chr3A 89.011 91 8 2 2678 2767 514170112 514170201 2.150000e-20 111.0
2 TraesCS3A01G227000 chr3D 92.025 4627 283 45 1817 6402 306028963 306024382 0.000000e+00 6421.0
3 TraesCS3A01G227000 chr3D 86.352 1568 131 34 1 1521 306030934 306029403 0.000000e+00 1633.0
4 TraesCS3A01G227000 chr3D 87.631 857 82 12 6405 7244 306024348 306023499 0.000000e+00 974.0
5 TraesCS3A01G227000 chr3D 93.782 193 5 3 1626 1817 306029404 306029218 4.310000e-72 283.0
6 TraesCS3A01G227000 chr3B 89.391 2809 222 34 2766 5538 415052740 415055508 0.000000e+00 3467.0
7 TraesCS3A01G227000 chr3B 94.393 963 29 9 1635 2582 415050830 415051782 0.000000e+00 1456.0
8 TraesCS3A01G227000 chr3B 91.027 1003 68 13 533 1523 415049834 415050826 0.000000e+00 1334.0
9 TraesCS3A01G227000 chr3B 90.074 806 72 8 5601 6402 415055517 415056318 0.000000e+00 1038.0
10 TraesCS3A01G227000 chr3B 88.488 443 27 9 89 525 415049189 415049613 1.400000e-141 514.0
11 TraesCS3A01G227000 chr3B 83.908 261 25 7 6554 6798 415082310 415082569 4.400000e-57 233.0
12 TraesCS3A01G227000 chr3B 91.304 161 12 2 6402 6561 415056349 415056508 1.230000e-52 219.0
13 TraesCS3A01G227000 chr3B 90.179 112 11 0 1516 1627 715873134 715873245 5.900000e-31 147.0
14 TraesCS3A01G227000 chr3B 88.393 112 10 2 2569 2678 415052634 415052744 1.650000e-26 132.0
15 TraesCS3A01G227000 chr3B 87.629 97 9 1 2674 2767 341178959 341179055 7.740000e-20 110.0
16 TraesCS3A01G227000 chr2D 90.517 116 11 0 1520 1635 519543573 519543458 3.520000e-33 154.0
17 TraesCS3A01G227000 chrUn 89.655 116 12 0 1520 1635 80692062 80692177 1.640000e-31 148.0
18 TraesCS3A01G227000 chrUn 88.889 90 4 4 2667 2753 103105924 103106010 1.000000e-18 106.0
19 TraesCS3A01G227000 chr1B 89.655 116 12 0 1520 1635 621672059 621672174 1.640000e-31 148.0
20 TraesCS3A01G227000 chr4B 90.826 109 10 0 1520 1628 42978601 42978493 5.900000e-31 147.0
21 TraesCS3A01G227000 chr1A 90.826 109 10 0 1520 1628 143969160 143969052 5.900000e-31 147.0
22 TraesCS3A01G227000 chr2A 89.565 115 11 1 1513 1627 225438112 225437999 2.120000e-30 145.0
23 TraesCS3A01G227000 chr6B 88.793 116 13 0 1520 1635 217297812 217297697 7.630000e-30 143.0
24 TraesCS3A01G227000 chr6B 88.793 116 13 0 1520 1635 269019133 269019018 7.630000e-30 143.0
25 TraesCS3A01G227000 chr6B 86.792 106 10 3 2662 2767 684940297 684940398 1.660000e-21 115.0
26 TraesCS3A01G227000 chr6B 85.577 104 12 1 2667 2767 160912489 160912386 1.000000e-18 106.0
27 TraesCS3A01G227000 chr6D 87.255 102 11 2 2666 2767 292393281 292393182 1.660000e-21 115.0
28 TraesCS3A01G227000 chr6D 92.982 57 2 2 285 340 403649895 403649950 1.690000e-11 82.4
29 TraesCS3A01G227000 chr7B 89.011 91 8 2 2678 2767 670232164 670232253 2.150000e-20 111.0
30 TraesCS3A01G227000 chr5D 85.455 110 13 1 2661 2767 369429237 369429128 2.150000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G227000 chr3A 424458749 424466041 7292 True 13468.000000 13468 100.000000 1 7293 1 chr3A.!!$R1 7292
1 TraesCS3A01G227000 chr3D 306023499 306030934 7435 True 2327.750000 6421 89.947500 1 7244 4 chr3D.!!$R1 7243
2 TraesCS3A01G227000 chr3B 415049189 415056508 7319 False 1165.714286 3467 90.438571 89 6561 7 chr3B.!!$F4 6472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.238289 CCGAAGCTCGCAAACAATGT 59.762 50.0 0.00 0.00 38.82 2.71 F
596 821 0.999406 TAATTGCTCGCTCAGTTCGC 59.001 50.0 0.00 0.00 0.00 4.70 F
604 829 1.016130 CGCTCAGTTCGCATCCAACT 61.016 55.0 0.00 0.00 34.24 3.16 F
2075 2589 0.673985 TAGATGCTGGTCCGATTCCG 59.326 55.0 0.00 0.00 0.00 4.30 F
3186 4574 1.822114 TTGCCTCCGTCCATCGAACA 61.822 55.0 0.00 0.00 42.86 3.18 F
3654 5047 0.239082 GCAAATGGCTGCCAAAAAGC 59.761 50.0 27.24 21.79 36.95 3.51 F
5385 6807 0.759346 CCACAGTATGCCTAGTCCCC 59.241 60.0 0.00 0.00 42.53 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1154 1393 0.320073 CCCGCTGTTCTCCGTTGTAA 60.320 55.000 0.00 0.00 0.00 2.41 R
1683 1922 1.683943 AGCAAGCAAGCTGTTCTCAA 58.316 45.000 1.81 0.00 44.66 3.02 R
2226 2740 1.899814 TGGCAGTCTATTGGTCGAACT 59.100 47.619 0.33 0.00 0.00 3.01 R
3635 5028 0.239082 GCTTTTTGGCAGCCATTTGC 59.761 50.000 17.09 13.69 43.34 3.68 R
4898 6320 0.026803 CTGCAGTTATTCGGAAGCGC 59.973 55.000 5.25 0.00 0.00 5.92 R
5578 7000 0.827368 GCCTTCCGAGTTCTGATCCT 59.173 55.000 0.00 0.00 0.00 3.24 R
7153 8630 0.035056 GTGACTAGGCCATTGGTGCT 60.035 55.000 5.01 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.964373 GTTTCCCTCGGCAAGCGAA 60.964 57.895 0.00 0.00 0.00 4.70
27 28 2.563427 GCAAGCGAACCTTCCAGC 59.437 61.111 0.00 0.00 0.00 4.85
28 29 1.968540 GCAAGCGAACCTTCCAGCT 60.969 57.895 0.00 0.00 42.35 4.24
33 34 0.603975 GCGAACCTTCCAGCTGAGTT 60.604 55.000 17.39 12.82 0.00 3.01
34 35 1.433534 CGAACCTTCCAGCTGAGTTC 58.566 55.000 17.39 19.16 34.78 3.01
36 37 2.147150 GAACCTTCCAGCTGAGTTCAC 58.853 52.381 17.39 0.00 37.39 3.18
50 51 0.511221 GTTCACGTGATGGTCCAACG 59.489 55.000 20.80 13.41 0.00 4.10
76 77 1.032794 CACCTTCGAGATCCCATCGA 58.967 55.000 1.73 1.73 46.72 3.59
86 87 2.076622 ATCCCATCGACCGAAGCTCG 62.077 60.000 0.00 0.00 40.07 5.03
96 97 0.238289 CCGAAGCTCGCAAACAATGT 59.762 50.000 0.00 0.00 38.82 2.71
97 98 1.595609 CGAAGCTCGCAAACAATGTC 58.404 50.000 0.00 0.00 31.14 3.06
99 100 2.349817 CGAAGCTCGCAAACAATGTCTT 60.350 45.455 0.00 0.00 31.14 3.01
102 103 2.618241 AGCTCGCAAACAATGTCTTCAA 59.382 40.909 0.00 0.00 0.00 2.69
103 104 2.975851 GCTCGCAAACAATGTCTTCAAG 59.024 45.455 0.00 0.00 0.00 3.02
104 105 3.558505 CTCGCAAACAATGTCTTCAAGG 58.441 45.455 0.00 0.00 0.00 3.61
105 106 3.210227 TCGCAAACAATGTCTTCAAGGA 58.790 40.909 0.00 0.00 0.00 3.36
106 107 3.250762 TCGCAAACAATGTCTTCAAGGAG 59.749 43.478 0.00 0.00 0.00 3.69
107 108 3.250762 CGCAAACAATGTCTTCAAGGAGA 59.749 43.478 0.00 0.00 0.00 3.71
108 109 4.083110 CGCAAACAATGTCTTCAAGGAGAT 60.083 41.667 0.00 0.00 0.00 2.75
113 114 6.727824 ACAATGTCTTCAAGGAGATAAACG 57.272 37.500 0.00 0.00 0.00 3.60
115 116 6.591834 ACAATGTCTTCAAGGAGATAAACGAG 59.408 38.462 0.00 0.00 0.00 4.18
159 160 1.367471 GGCAAACCAAACCTGAGGC 59.633 57.895 0.00 0.00 35.26 4.70
193 201 2.043652 ACAGCCATGACCATGCCC 60.044 61.111 4.53 0.00 37.49 5.36
194 202 2.277737 CAGCCATGACCATGCCCT 59.722 61.111 4.53 1.02 37.49 5.19
214 222 4.273148 CTGGTTGCCAGTTAACTAGTCT 57.727 45.455 8.04 0.00 45.82 3.24
215 223 5.401531 CTGGTTGCCAGTTAACTAGTCTA 57.598 43.478 8.04 0.00 45.82 2.59
216 224 5.143376 TGGTTGCCAGTTAACTAGTCTAC 57.857 43.478 8.04 7.25 0.00 2.59
217 225 4.020839 TGGTTGCCAGTTAACTAGTCTACC 60.021 45.833 8.04 15.13 0.00 3.18
218 226 4.020839 GGTTGCCAGTTAACTAGTCTACCA 60.021 45.833 8.04 0.00 0.00 3.25
219 227 4.796038 TGCCAGTTAACTAGTCTACCAC 57.204 45.455 8.04 0.00 0.00 4.16
220 228 4.413760 TGCCAGTTAACTAGTCTACCACT 58.586 43.478 8.04 0.00 39.41 4.00
221 229 4.461781 TGCCAGTTAACTAGTCTACCACTC 59.538 45.833 8.04 0.00 36.43 3.51
244 252 5.130975 TCCCATAGTACGACTAGTCTACCAA 59.869 44.000 20.34 12.22 33.66 3.67
248 256 5.370875 AGTACGACTAGTCTACCAATCCT 57.629 43.478 20.34 2.80 0.00 3.24
261 269 5.849475 TCTACCAATCCTATGGCTATGGAAA 59.151 40.000 0.00 0.00 44.75 3.13
343 351 2.263741 AAAGGCTGCTCTGTTGGCG 61.264 57.895 0.00 0.00 0.00 5.69
375 383 3.092511 GGCTCTGATGGGGCTGGA 61.093 66.667 0.00 0.00 0.00 3.86
525 537 2.900106 GCCTGTGCTGGAGAAGGGT 61.900 63.158 0.00 0.00 33.53 4.34
565 790 9.472361 AGTTTGCATGCAATCATCTTATAAATC 57.528 29.630 32.37 10.90 35.70 2.17
571 796 5.239087 TGCAATCATCTTATAAATCAGCGCA 59.761 36.000 11.47 0.00 0.00 6.09
596 821 0.999406 TAATTGCTCGCTCAGTTCGC 59.001 50.000 0.00 0.00 0.00 4.70
604 829 1.016130 CGCTCAGTTCGCATCCAACT 61.016 55.000 0.00 0.00 34.24 3.16
606 831 1.674221 GCTCAGTTCGCATCCAACTCT 60.674 52.381 0.00 0.00 31.40 3.24
632 857 2.586648 TTCTTTGAGCCCTTCTTCCC 57.413 50.000 0.00 0.00 0.00 3.97
661 886 2.232452 GTGAGTACTCTGCTCCATGTGT 59.768 50.000 23.01 0.00 32.31 3.72
695 921 3.806521 CCTGCCTCATTTCGATCAACTAG 59.193 47.826 0.00 0.00 0.00 2.57
697 923 5.084818 TGCCTCATTTCGATCAACTAGAA 57.915 39.130 0.00 0.00 0.00 2.10
698 924 4.870426 TGCCTCATTTCGATCAACTAGAAC 59.130 41.667 0.00 0.00 0.00 3.01
699 925 4.870426 GCCTCATTTCGATCAACTAGAACA 59.130 41.667 0.00 0.00 0.00 3.18
700 926 5.006165 GCCTCATTTCGATCAACTAGAACAG 59.994 44.000 0.00 0.00 0.00 3.16
701 927 6.102663 CCTCATTTCGATCAACTAGAACAGT 58.897 40.000 0.00 0.00 40.05 3.55
704 930 9.307121 CTCATTTCGATCAACTAGAACAGTAAT 57.693 33.333 0.00 0.00 36.04 1.89
705 931 9.302345 TCATTTCGATCAACTAGAACAGTAATC 57.698 33.333 0.00 0.00 36.04 1.75
706 932 9.087424 CATTTCGATCAACTAGAACAGTAATCA 57.913 33.333 0.00 0.00 36.04 2.57
707 933 9.823647 ATTTCGATCAACTAGAACAGTAATCAT 57.176 29.630 0.00 0.00 36.04 2.45
708 934 8.858003 TTCGATCAACTAGAACAGTAATCATC 57.142 34.615 0.00 0.00 36.04 2.92
710 936 7.285629 TCGATCAACTAGAACAGTAATCATCCT 59.714 37.037 0.00 0.00 36.04 3.24
711 937 7.923344 CGATCAACTAGAACAGTAATCATCCTT 59.077 37.037 0.00 0.00 36.04 3.36
712 938 9.606631 GATCAACTAGAACAGTAATCATCCTTT 57.393 33.333 0.00 0.00 36.04 3.11
714 940 8.816894 TCAACTAGAACAGTAATCATCCTTTCT 58.183 33.333 0.00 0.00 36.04 2.52
717 943 8.254508 ACTAGAACAGTAATCATCCTTTCTGTC 58.745 37.037 0.00 0.00 34.98 3.51
718 944 7.009179 AGAACAGTAATCATCCTTTCTGTCA 57.991 36.000 0.00 0.00 35.53 3.58
719 945 7.102346 AGAACAGTAATCATCCTTTCTGTCAG 58.898 38.462 0.00 0.00 35.53 3.51
721 947 7.009179 ACAGTAATCATCCTTTCTGTCAGAA 57.991 36.000 11.36 11.36 31.81 3.02
723 949 8.762645 ACAGTAATCATCCTTTCTGTCAGAATA 58.237 33.333 15.95 5.79 33.67 1.75
724 950 9.258826 CAGTAATCATCCTTTCTGTCAGAATAG 57.741 37.037 15.95 14.47 33.67 1.73
727 953 8.729805 AATCATCCTTTCTGTCAGAATAGTTC 57.270 34.615 15.95 0.00 33.67 3.01
728 954 7.244886 TCATCCTTTCTGTCAGAATAGTTCA 57.755 36.000 15.95 0.00 33.67 3.18
729 955 7.326454 TCATCCTTTCTGTCAGAATAGTTCAG 58.674 38.462 15.95 9.04 33.67 3.02
733 959 7.442364 TCCTTTCTGTCAGAATAGTTCAGTTTG 59.558 37.037 15.95 0.00 33.67 2.93
734 960 7.442364 CCTTTCTGTCAGAATAGTTCAGTTTGA 59.558 37.037 15.95 0.00 33.67 2.69
735 961 7.953158 TTCTGTCAGAATAGTTCAGTTTGAG 57.047 36.000 11.36 0.00 0.00 3.02
736 962 5.928839 TCTGTCAGAATAGTTCAGTTTGAGC 59.071 40.000 0.00 0.00 0.00 4.26
737 963 5.858381 TGTCAGAATAGTTCAGTTTGAGCT 58.142 37.500 0.00 0.00 40.97 4.09
743 969 9.950680 CAGAATAGTTCAGTTTGAGCTTAAAAA 57.049 29.630 5.08 0.00 38.83 1.94
748 974 6.920210 AGTTCAGTTTGAGCTTAAAAATCAGC 59.080 34.615 5.08 0.00 34.12 4.26
749 975 6.389830 TCAGTTTGAGCTTAAAAATCAGCA 57.610 33.333 5.08 0.00 38.61 4.41
750 976 6.804677 TCAGTTTGAGCTTAAAAATCAGCAA 58.195 32.000 5.08 0.00 38.61 3.91
773 1007 7.712639 GCAATCATCCTTTCTGTCAGAATAGTA 59.287 37.037 15.95 4.71 33.67 1.82
825 1059 5.120674 TGTGCTCAATACAATTCAACTCGAG 59.879 40.000 11.84 11.84 0.00 4.04
866 1102 5.181235 CAAGCAACGATTGTTTGCATTAG 57.819 39.130 17.20 0.00 43.18 1.73
926 1162 5.815740 GCATGAATTTCTTGATGCCATTTCT 59.184 36.000 14.56 0.00 43.61 2.52
967 1203 6.052360 TGTATCATGCTTTTCACGGCTTATA 58.948 36.000 0.00 0.00 0.00 0.98
968 1204 4.875544 TCATGCTTTTCACGGCTTATAC 57.124 40.909 0.00 0.00 0.00 1.47
969 1205 3.308595 TCATGCTTTTCACGGCTTATACG 59.691 43.478 0.00 0.00 37.36 3.06
970 1206 2.004017 TGCTTTTCACGGCTTATACGG 58.996 47.619 0.00 0.00 35.23 4.02
971 1207 1.329599 GCTTTTCACGGCTTATACGGG 59.670 52.381 0.00 0.00 35.74 5.28
972 1208 1.937899 CTTTTCACGGCTTATACGGGG 59.062 52.381 0.00 0.00 35.01 5.73
981 1220 2.028658 GGCTTATACGGGGCTACTTACC 60.029 54.545 0.00 0.00 0.00 2.85
1051 1290 4.187506 ACCATTCTCTCCCTACTCCTAC 57.812 50.000 0.00 0.00 0.00 3.18
1117 1356 1.237285 TGCTTTGAAGAAGAGGCCGC 61.237 55.000 0.00 0.00 0.00 6.53
1140 1379 7.116948 CCGCTAATGGAAGACATCTATAACAAG 59.883 40.741 0.00 0.00 39.40 3.16
1142 1381 7.659390 GCTAATGGAAGACATCTATAACAAGCT 59.341 37.037 0.00 0.00 39.40 3.74
1154 1393 6.889198 TCTATAACAAGCTAGTGCCAAAGAT 58.111 36.000 0.00 0.00 40.80 2.40
1321 1560 2.248431 GAAACAGACGTGTGCGCC 59.752 61.111 13.35 0.00 42.83 6.53
1353 1592 1.801913 CGTCGTCCCGCTCAAGAAG 60.802 63.158 0.00 0.00 0.00 2.85
1422 1661 3.058914 CACAGAATTTCACGGTGGTCTTC 60.059 47.826 8.50 8.48 31.85 2.87
1473 1712 1.807573 CGCCGAGTGCTTCTTCTCC 60.808 63.158 0.00 0.00 38.05 3.71
1481 1720 3.158676 AGTGCTTCTTCTCCGTAAGAGT 58.841 45.455 0.00 0.00 43.71 3.24
1482 1721 3.191791 AGTGCTTCTTCTCCGTAAGAGTC 59.808 47.826 0.00 0.00 43.71 3.36
1483 1722 3.057456 GTGCTTCTTCTCCGTAAGAGTCA 60.057 47.826 0.00 0.00 43.71 3.41
1484 1723 3.572682 TGCTTCTTCTCCGTAAGAGTCAA 59.427 43.478 0.00 0.00 43.71 3.18
1485 1724 4.220821 TGCTTCTTCTCCGTAAGAGTCAAT 59.779 41.667 0.00 0.00 43.71 2.57
1514 1753 5.719173 TCAACCTCTTTTTGTCCTTGTTTG 58.281 37.500 0.00 0.00 0.00 2.93
1523 1762 9.581099 TCTTTTTGTCCTTGTTTGATTTTACTC 57.419 29.630 0.00 0.00 0.00 2.59
1524 1763 8.710835 TTTTTGTCCTTGTTTGATTTTACTCC 57.289 30.769 0.00 0.00 0.00 3.85
1525 1764 6.399639 TTGTCCTTGTTTGATTTTACTCCC 57.600 37.500 0.00 0.00 0.00 4.30
1526 1765 5.701224 TGTCCTTGTTTGATTTTACTCCCT 58.299 37.500 0.00 0.00 0.00 4.20
1527 1766 5.768164 TGTCCTTGTTTGATTTTACTCCCTC 59.232 40.000 0.00 0.00 0.00 4.30
1528 1767 6.004574 GTCCTTGTTTGATTTTACTCCCTCT 58.995 40.000 0.00 0.00 0.00 3.69
1529 1768 6.003950 TCCTTGTTTGATTTTACTCCCTCTG 58.996 40.000 0.00 0.00 0.00 3.35
1530 1769 5.770162 CCTTGTTTGATTTTACTCCCTCTGT 59.230 40.000 0.00 0.00 0.00 3.41
1531 1770 6.265422 CCTTGTTTGATTTTACTCCCTCTGTT 59.735 38.462 0.00 0.00 0.00 3.16
1532 1771 6.877611 TGTTTGATTTTACTCCCTCTGTTC 57.122 37.500 0.00 0.00 0.00 3.18
1533 1772 6.361433 TGTTTGATTTTACTCCCTCTGTTCA 58.639 36.000 0.00 0.00 0.00 3.18
1534 1773 6.262273 TGTTTGATTTTACTCCCTCTGTTCAC 59.738 38.462 0.00 0.00 0.00 3.18
1535 1774 5.825593 TGATTTTACTCCCTCTGTTCACT 57.174 39.130 0.00 0.00 0.00 3.41
1536 1775 6.187727 TGATTTTACTCCCTCTGTTCACTT 57.812 37.500 0.00 0.00 0.00 3.16
1537 1776 6.601332 TGATTTTACTCCCTCTGTTCACTTT 58.399 36.000 0.00 0.00 0.00 2.66
1538 1777 7.060421 TGATTTTACTCCCTCTGTTCACTTTT 58.940 34.615 0.00 0.00 0.00 2.27
1539 1778 8.215050 TGATTTTACTCCCTCTGTTCACTTTTA 58.785 33.333 0.00 0.00 0.00 1.52
1540 1779 9.232473 GATTTTACTCCCTCTGTTCACTTTTAT 57.768 33.333 0.00 0.00 0.00 1.40
1543 1782 9.720769 TTTACTCCCTCTGTTCACTTTTATAAG 57.279 33.333 0.00 0.00 37.40 1.73
1544 1783 6.712276 ACTCCCTCTGTTCACTTTTATAAGG 58.288 40.000 0.00 0.00 35.61 2.69
1545 1784 5.497474 TCCCTCTGTTCACTTTTATAAGGC 58.503 41.667 0.00 0.00 35.61 4.35
1546 1785 4.640647 CCCTCTGTTCACTTTTATAAGGCC 59.359 45.833 0.00 0.00 35.61 5.19
1547 1786 5.501156 CCTCTGTTCACTTTTATAAGGCCT 58.499 41.667 0.00 0.00 35.61 5.19
1548 1787 5.946377 CCTCTGTTCACTTTTATAAGGCCTT 59.054 40.000 24.18 24.18 35.61 4.35
1549 1788 6.127897 CCTCTGTTCACTTTTATAAGGCCTTG 60.128 42.308 28.77 12.48 35.61 3.61
1550 1789 6.539173 TCTGTTCACTTTTATAAGGCCTTGA 58.461 36.000 28.77 11.98 35.61 3.02
1551 1790 7.001674 TCTGTTCACTTTTATAAGGCCTTGAA 58.998 34.615 28.77 17.44 35.61 2.69
1552 1791 7.174946 TCTGTTCACTTTTATAAGGCCTTGAAG 59.825 37.037 28.77 24.09 35.61 3.02
1553 1792 7.001674 TGTTCACTTTTATAAGGCCTTGAAGA 58.998 34.615 28.77 15.87 35.61 2.87
1554 1793 7.040686 TGTTCACTTTTATAAGGCCTTGAAGAC 60.041 37.037 28.77 17.56 35.61 3.01
1555 1794 6.539173 TCACTTTTATAAGGCCTTGAAGACA 58.461 36.000 28.77 7.10 35.61 3.41
1556 1795 7.175104 TCACTTTTATAAGGCCTTGAAGACAT 58.825 34.615 28.77 14.50 35.61 3.06
1557 1796 7.669722 TCACTTTTATAAGGCCTTGAAGACATT 59.330 33.333 28.77 0.00 35.61 2.71
1558 1797 8.306761 CACTTTTATAAGGCCTTGAAGACATTT 58.693 33.333 28.77 0.00 35.61 2.32
1559 1798 8.523658 ACTTTTATAAGGCCTTGAAGACATTTC 58.476 33.333 28.77 0.00 35.61 2.17
1560 1799 8.415950 TTTTATAAGGCCTTGAAGACATTTCA 57.584 30.769 28.77 3.15 0.00 2.69
1561 1800 7.630242 TTATAAGGCCTTGAAGACATTTCAG 57.370 36.000 28.77 0.00 0.00 3.02
1562 1801 3.795688 AGGCCTTGAAGACATTTCAGA 57.204 42.857 0.00 0.00 0.00 3.27
1563 1802 4.313020 AGGCCTTGAAGACATTTCAGAT 57.687 40.909 0.00 0.00 0.00 2.90
1564 1803 5.441718 AGGCCTTGAAGACATTTCAGATA 57.558 39.130 0.00 0.00 0.00 1.98
1565 1804 5.819991 AGGCCTTGAAGACATTTCAGATAA 58.180 37.500 0.00 0.00 0.00 1.75
1566 1805 6.430007 AGGCCTTGAAGACATTTCAGATAAT 58.570 36.000 0.00 0.00 0.00 1.28
1567 1806 6.320672 AGGCCTTGAAGACATTTCAGATAATG 59.679 38.462 0.00 0.00 40.53 1.90
1569 1808 6.971184 GCCTTGAAGACATTTCAGATAATGTG 59.029 38.462 12.82 0.00 45.98 3.21
1570 1809 6.971184 CCTTGAAGACATTTCAGATAATGTGC 59.029 38.462 12.82 7.29 45.98 4.57
1571 1810 7.362315 CCTTGAAGACATTTCAGATAATGTGCA 60.362 37.037 12.82 0.00 45.98 4.57
1572 1811 7.451501 TGAAGACATTTCAGATAATGTGCAA 57.548 32.000 12.82 0.00 45.98 4.08
1573 1812 7.884257 TGAAGACATTTCAGATAATGTGCAAA 58.116 30.769 12.82 0.00 45.98 3.68
1574 1813 8.024865 TGAAGACATTTCAGATAATGTGCAAAG 58.975 33.333 12.82 0.00 45.98 2.77
1575 1814 6.327934 AGACATTTCAGATAATGTGCAAAGC 58.672 36.000 12.82 0.00 45.98 3.51
1576 1815 6.028146 ACATTTCAGATAATGTGCAAAGCA 57.972 33.333 9.06 0.00 44.71 3.91
1577 1816 6.097356 ACATTTCAGATAATGTGCAAAGCAG 58.903 36.000 9.06 0.00 44.71 4.24
1578 1817 5.710513 TTTCAGATAATGTGCAAAGCAGT 57.289 34.783 0.00 0.00 40.08 4.40
1579 1818 4.690184 TCAGATAATGTGCAAAGCAGTG 57.310 40.909 0.00 0.00 40.08 3.66
1580 1819 3.119743 TCAGATAATGTGCAAAGCAGTGC 60.120 43.478 7.13 7.13 40.08 4.40
1592 1831 5.750650 GCAAAGCAGTGCATTTTTAATTGT 58.249 33.333 19.20 0.00 44.29 2.71
1593 1832 5.847515 GCAAAGCAGTGCATTTTTAATTGTC 59.152 36.000 19.20 2.91 44.29 3.18
1594 1833 6.293027 GCAAAGCAGTGCATTTTTAATTGTCT 60.293 34.615 19.20 0.00 44.29 3.41
1595 1834 6.774354 AAGCAGTGCATTTTTAATTGTCTG 57.226 33.333 19.20 0.00 0.00 3.51
1596 1835 6.088016 AGCAGTGCATTTTTAATTGTCTGA 57.912 33.333 19.20 0.00 0.00 3.27
1597 1836 6.514947 AGCAGTGCATTTTTAATTGTCTGAA 58.485 32.000 19.20 0.00 0.00 3.02
1598 1837 6.985645 AGCAGTGCATTTTTAATTGTCTGAAA 59.014 30.769 19.20 0.00 0.00 2.69
1599 1838 7.042523 AGCAGTGCATTTTTAATTGTCTGAAAC 60.043 33.333 19.20 0.00 0.00 2.78
1600 1839 7.275785 CAGTGCATTTTTAATTGTCTGAAACG 58.724 34.615 0.00 0.00 0.00 3.60
1601 1840 7.167302 CAGTGCATTTTTAATTGTCTGAAACGA 59.833 33.333 0.00 0.00 0.00 3.85
1602 1841 7.167468 AGTGCATTTTTAATTGTCTGAAACGAC 59.833 33.333 0.00 0.00 34.52 4.34
1603 1842 7.167468 GTGCATTTTTAATTGTCTGAAACGACT 59.833 33.333 0.00 0.00 35.00 4.18
1604 1843 7.704472 TGCATTTTTAATTGTCTGAAACGACTT 59.296 29.630 0.00 0.00 35.00 3.01
1605 1844 9.176181 GCATTTTTAATTGTCTGAAACGACTTA 57.824 29.630 0.00 0.00 35.00 2.24
1618 1857 9.672086 TCTGAAACGACTTACAAAAATAAATGG 57.328 29.630 0.00 0.00 0.00 3.16
1619 1858 9.672086 CTGAAACGACTTACAAAAATAAATGGA 57.328 29.630 0.00 0.00 0.00 3.41
1620 1859 9.672086 TGAAACGACTTACAAAAATAAATGGAG 57.328 29.630 0.00 0.00 0.00 3.86
1621 1860 9.124807 GAAACGACTTACAAAAATAAATGGAGG 57.875 33.333 0.00 0.00 0.00 4.30
1622 1861 7.989416 ACGACTTACAAAAATAAATGGAGGA 57.011 32.000 0.00 0.00 0.00 3.71
1623 1862 8.398878 ACGACTTACAAAAATAAATGGAGGAA 57.601 30.769 0.00 0.00 0.00 3.36
1624 1863 8.512138 ACGACTTACAAAAATAAATGGAGGAAG 58.488 33.333 0.00 0.00 0.00 3.46
1625 1864 8.512138 CGACTTACAAAAATAAATGGAGGAAGT 58.488 33.333 0.00 0.00 0.00 3.01
1665 1904 1.341285 TGCTTGCTATGCTGGGTTGAT 60.341 47.619 0.00 0.00 0.00 2.57
2073 2587 1.606737 GGCTAGATGCTGGTCCGATTC 60.607 57.143 0.00 0.00 42.39 2.52
2075 2589 0.673985 TAGATGCTGGTCCGATTCCG 59.326 55.000 0.00 0.00 0.00 4.30
2343 2857 2.093869 AGCAGCAAAATTCGATGGCATT 60.094 40.909 0.00 0.00 0.00 3.56
2382 2896 2.820197 GGAAATTTCGGTTGAAGGCTCT 59.180 45.455 11.95 0.00 35.06 4.09
2444 2958 7.270047 TCTAATTATAGCTGTTGTGTGGTACC 58.730 38.462 4.43 4.43 0.00 3.34
2445 2959 2.781681 ATAGCTGTTGTGTGGTACCC 57.218 50.000 10.07 1.05 0.00 3.69
2519 3036 7.785033 ACAGTTGTTCATCCAAGATTTCTTTT 58.215 30.769 0.00 0.00 33.11 2.27
2572 3953 6.323203 ACAGTATTGTGTCGTGTAGTAAGT 57.677 37.500 0.00 0.00 35.83 2.24
2683 4066 3.468071 TGCTACTTCCTACTTCCTCCA 57.532 47.619 0.00 0.00 0.00 3.86
2757 4143 7.624360 AAGTTGAGACACTTATTTTGTGACA 57.376 32.000 0.00 0.00 35.10 3.58
2758 4144 7.624360 AGTTGAGACACTTATTTTGTGACAA 57.376 32.000 0.00 0.00 38.65 3.18
2803 4189 3.429410 GGGGCATGTTCTTGCTGATTAAC 60.429 47.826 9.78 0.00 42.38 2.01
2806 4192 4.418392 GCATGTTCTTGCTGATTAACTGG 58.582 43.478 0.00 0.00 39.57 4.00
3082 4470 1.941377 ACATACACCCGAGTAACCCA 58.059 50.000 0.00 0.00 0.00 4.51
3153 4541 9.699703 GTTAAAAGAATATTGTTGGCCTTGTTA 57.300 29.630 3.32 0.00 0.00 2.41
3186 4574 1.822114 TTGCCTCCGTCCATCGAACA 61.822 55.000 0.00 0.00 42.86 3.18
3323 4716 8.964476 TTCTTCTTAAATAGGCAGGACTATTG 57.036 34.615 8.12 0.00 41.50 1.90
3450 4843 5.435686 TGATTGCTGGTCCAATAGTAAGT 57.564 39.130 0.00 0.00 35.67 2.24
3459 4852 7.418712 GCTGGTCCAATAGTAAGTAACCATAGT 60.419 40.741 0.00 0.00 34.98 2.12
3466 4859 8.358148 CAATAGTAAGTAACCATAGTCATCGGT 58.642 37.037 0.00 0.00 33.32 4.69
3496 4889 5.105756 CCATCCCACCTTTCAAGTTTGTATC 60.106 44.000 0.00 0.00 0.00 2.24
3510 4903 8.375506 TCAAGTTTGTATCAGGAAGAAGTGTAT 58.624 33.333 0.00 0.00 0.00 2.29
3519 4912 6.601332 TCAGGAAGAAGTGTATTTTTGGTCT 58.399 36.000 0.00 0.00 0.00 3.85
3595 4988 6.590234 ATTGATCCCCTAAAAGTGTCAAAC 57.410 37.500 0.00 0.00 0.00 2.93
3624 5017 3.944422 AGTTTATACTTTGCATCGGCG 57.056 42.857 0.00 0.00 45.35 6.46
3635 5028 1.010797 CATCGGCGGAGATTTTGCG 60.011 57.895 7.21 0.00 44.26 4.85
3644 5037 1.404583 GGAGATTTTGCGCAAATGGCT 60.405 47.619 33.94 28.02 41.67 4.75
3652 5045 1.505477 GCGCAAATGGCTGCCAAAAA 61.505 50.000 27.24 1.25 41.67 1.94
3654 5047 0.239082 GCAAATGGCTGCCAAAAAGC 59.761 50.000 27.24 21.79 36.95 3.51
3662 5055 2.358582 GGCTGCCAAAAAGCACAAAATT 59.641 40.909 15.17 0.00 42.69 1.82
3668 5061 5.182760 TGCCAAAAAGCACAAAATTGAAACT 59.817 32.000 0.00 0.00 38.00 2.66
3675 5068 5.659463 AGCACAAAATTGAAACTGTAAGCA 58.341 33.333 0.00 0.00 37.60 3.91
3690 5083 6.925610 CTGTAAGCAGTCAATATAAGGCAA 57.074 37.500 0.00 0.00 37.92 4.52
3712 5112 7.973944 GGCAATTTAACGAGTCCTATGATTTTT 59.026 33.333 0.00 0.00 0.00 1.94
3810 5211 8.380099 TGGTGACTAGTGGTATCTTTTATGTTT 58.620 33.333 0.00 0.00 0.00 2.83
3818 5219 9.762381 AGTGGTATCTTTTATGTTTCCCATTTA 57.238 29.630 0.00 0.00 34.86 1.40
3857 5258 9.762381 ATGGACAATAATAAGGACCAAACTTAA 57.238 29.630 0.00 0.00 34.42 1.85
3891 5292 3.154827 TGGGATCCAAAGTGACCTTTC 57.845 47.619 15.23 0.00 38.87 2.62
3962 5363 1.543802 TCCATTCAATCGTTGGCCAAC 59.456 47.619 34.48 34.48 37.92 3.77
3991 5392 5.715434 TTTGGTGCCTCAAGTATAAAACC 57.285 39.130 0.00 0.00 0.00 3.27
4097 5498 7.703058 AAAGGTGTTGGAAATTATGTAGGAG 57.297 36.000 0.00 0.00 0.00 3.69
4347 5749 5.594317 AGCATTCCCACATATTTTGGTAGTC 59.406 40.000 0.00 0.00 31.46 2.59
4387 5789 9.661954 TTCATACTTTCCCTGATTCTAGATAGT 57.338 33.333 0.00 0.00 0.00 2.12
4479 5881 2.788786 GTGTTTCCATCTGTGCAAAACG 59.211 45.455 0.00 0.00 34.67 3.60
4481 5883 3.129462 TGTTTCCATCTGTGCAAAACGAA 59.871 39.130 0.00 0.00 34.67 3.85
4482 5884 3.347958 TTCCATCTGTGCAAAACGAAC 57.652 42.857 0.00 0.00 0.00 3.95
4486 5907 1.657181 CTGTGCAAAACGAACGGCC 60.657 57.895 0.00 0.00 0.00 6.13
4515 5936 4.429854 GGGCAAGAGACCAAATCTATCT 57.570 45.455 0.00 0.00 45.05 1.98
4521 5942 7.247019 GCAAGAGACCAAATCTATCTTGTTTC 58.753 38.462 13.09 0.00 39.68 2.78
4598 6019 4.905456 TCGGGATATAGTTGAAGGACCAAT 59.095 41.667 0.00 0.00 0.00 3.16
4601 6022 7.236847 TCGGGATATAGTTGAAGGACCAATAAT 59.763 37.037 0.00 0.00 0.00 1.28
4641 6062 4.479158 ACAAAAATGCCCCTAAGTGAAGA 58.521 39.130 0.00 0.00 0.00 2.87
4643 6064 5.365314 ACAAAAATGCCCCTAAGTGAAGAAA 59.635 36.000 0.00 0.00 0.00 2.52
4798 6220 7.244166 AGAAATGATAGAGTTGCTGAAATCG 57.756 36.000 0.00 0.00 31.28 3.34
4805 6227 3.260884 AGAGTTGCTGAAATCGGAGGTTA 59.739 43.478 0.00 0.00 31.28 2.85
4837 6259 4.091365 TGCTTGATCGATTGAGTACGTTTG 59.909 41.667 0.00 0.00 0.00 2.93
4842 6264 6.151004 TGATCGATTGAGTACGTTTGTTACA 58.849 36.000 0.00 0.00 0.00 2.41
4846 6268 5.388061 CGATTGAGTACGTTTGTTACACTGG 60.388 44.000 0.00 0.00 0.00 4.00
4847 6269 3.125316 TGAGTACGTTTGTTACACTGGC 58.875 45.455 0.00 0.00 0.00 4.85
4860 6282 1.229428 CACTGGCAGAAAAGCGAAGA 58.771 50.000 23.66 0.00 34.64 2.87
4926 6348 1.732259 GAATAACTGCAGACACCACCG 59.268 52.381 23.35 0.00 0.00 4.94
4965 6387 2.334946 TGGGCTCTGCGCATTTGAC 61.335 57.895 12.24 6.09 46.09 3.18
4974 6396 1.337354 TGCGCATTTGACGGAACTAGA 60.337 47.619 5.66 0.00 0.00 2.43
4989 6411 5.259632 GGAACTAGAGGAGTAAGGTGTGTA 58.740 45.833 0.00 0.00 37.44 2.90
5009 6431 4.386652 TGTACGGTTATCGACAAAGCTTTC 59.613 41.667 9.23 0.00 42.43 2.62
5029 6451 8.035394 AGCTTTCGTTGTATCTCTGAAAATCTA 58.965 33.333 0.00 0.00 0.00 1.98
5093 6515 6.902416 TGTTTATTTTGGATTCCCCTCATGAT 59.098 34.615 0.00 0.00 35.38 2.45
5098 6520 4.819702 TGGATTCCCCTCATGATTTGAT 57.180 40.909 0.00 0.00 32.72 2.57
5100 6522 4.897076 TGGATTCCCCTCATGATTTGATTG 59.103 41.667 0.00 0.00 32.72 2.67
5110 6532 5.412640 TCATGATTTGATTGCACATGGTTC 58.587 37.500 10.29 0.00 38.82 3.62
5122 6544 3.684908 CACATGGTTCCTGTGTATCCAA 58.315 45.455 0.00 0.00 39.30 3.53
5150 6572 3.385755 GCTGGTATTAAGAGGGTAACGGA 59.614 47.826 0.00 0.00 37.60 4.69
5187 6609 7.229306 ACAACATCTGTAGACAACATGTTTGAT 59.771 33.333 8.77 0.00 37.34 2.57
5214 6636 2.344521 GCAATGCATGCGAGATGGCA 62.345 55.000 14.09 0.00 46.87 4.92
5310 6732 8.360390 GTGAGGTTACCTTTTGATTCTTGAATT 58.640 33.333 4.99 0.00 31.76 2.17
5340 6762 8.335532 AGCATTTCTACATTTGTAGCTTACAA 57.664 30.769 11.99 0.00 45.69 2.41
5385 6807 0.759346 CCACAGTATGCCTAGTCCCC 59.241 60.000 0.00 0.00 42.53 4.81
5387 6809 2.425829 CCACAGTATGCCTAGTCCCCTA 60.426 54.545 0.00 0.00 42.53 3.53
5514 6936 6.363088 CCGTTAGTTCAATTACAGTAACACGA 59.637 38.462 0.00 0.00 30.93 4.35
5543 6965 5.570320 ACCTTTATAAGAATGTGCACACCT 58.430 37.500 24.37 19.10 0.00 4.00
5546 6968 6.071952 CCTTTATAAGAATGTGCACACCTGTT 60.072 38.462 24.37 18.54 0.00 3.16
5549 6971 2.378038 AGAATGTGCACACCTGTTGTT 58.622 42.857 24.37 10.78 35.67 2.83
5555 6977 5.836821 TGTGCACACCTGTTGTTATAAAA 57.163 34.783 17.42 0.00 35.67 1.52
5583 7006 7.157347 TGAATGTGATAAGTAGCATGAGGATC 58.843 38.462 0.00 0.00 0.00 3.36
5596 7019 2.103373 TGAGGATCAGAACTCGGAAGG 58.897 52.381 0.00 0.00 42.56 3.46
5618 7041 6.423182 AGGCTTGGCTAGATACAACAAATTA 58.577 36.000 0.00 0.00 0.00 1.40
5620 7043 7.561356 AGGCTTGGCTAGATACAACAAATTAAT 59.439 33.333 0.00 0.00 0.00 1.40
5622 7045 8.624776 GCTTGGCTAGATACAACAAATTAATCT 58.375 33.333 0.00 0.00 0.00 2.40
5693 7116 4.887071 TCTATTAGCACAAATTCCGGCATT 59.113 37.500 0.00 0.00 0.00 3.56
5698 7121 2.412770 GCACAAATTCCGGCATTTCTTG 59.587 45.455 9.24 10.48 0.00 3.02
5733 7156 6.240549 AGTATTTTCTGATACTCAGTGGGG 57.759 41.667 0.00 0.00 44.58 4.96
5740 7163 6.049955 TCTGATACTCAGTGGGGTTTTAAG 57.950 41.667 0.00 0.00 44.58 1.85
5763 7190 6.940739 AGCATAGGTGGCTCTTGTAATATAG 58.059 40.000 0.00 0.00 36.81 1.31
5776 7203 9.817809 CTCTTGTAATATAGGAGTAGTTTGCAA 57.182 33.333 0.00 0.00 0.00 4.08
5805 7232 5.622770 AGCAGAAATACTTAAAACCGTGG 57.377 39.130 0.00 0.00 0.00 4.94
5806 7233 5.310451 AGCAGAAATACTTAAAACCGTGGA 58.690 37.500 0.00 0.00 0.00 4.02
5819 7248 6.405278 AAAACCGTGGAATTTTCTCTTGAT 57.595 33.333 0.00 0.00 0.00 2.57
5826 7255 7.333423 CCGTGGAATTTTCTCTTGATGTTAGTA 59.667 37.037 0.00 0.00 0.00 1.82
5884 7313 7.750229 AATGTACCTCACTGCCAATATATTG 57.250 36.000 17.11 17.11 37.52 1.90
5936 7365 7.917505 CGCATTCCATTAATTAAAAGAGAGCTT 59.082 33.333 1.21 0.00 35.37 3.74
5937 7366 9.242477 GCATTCCATTAATTAAAAGAGAGCTTC 57.758 33.333 1.21 0.00 31.82 3.86
5939 7368 8.786826 TTCCATTAATTAAAAGAGAGCTTCGA 57.213 30.769 1.21 0.00 31.82 3.71
5960 7389 9.834628 CTTCGAATGCAAATAAAACCTTAGTTA 57.165 29.630 0.00 0.00 34.19 2.24
6007 7438 5.163663 ACACAATTTCAATCATATTCCGCGT 60.164 36.000 4.92 0.00 0.00 6.01
6050 7481 0.873054 GCGATGGATTCATGGCTCAG 59.127 55.000 13.39 0.00 46.90 3.35
6070 7501 4.336153 TCAGTGTATTAGCGGATTCACGTA 59.664 41.667 0.00 0.00 33.94 3.57
6112 7543 1.203313 AGGCCCTCTCTGGTAAGACAA 60.203 52.381 0.00 0.00 0.00 3.18
6135 7566 1.668751 CACTACTTGCACCGTTGTTGT 59.331 47.619 0.00 0.00 0.00 3.32
6172 7603 3.438216 TTGTTTGCTCCCATGAGATCA 57.562 42.857 0.00 0.00 41.42 2.92
6181 7612 5.071370 GCTCCCATGAGATCAGAATTTCAT 58.929 41.667 0.00 0.00 41.42 2.57
6200 7631 1.522580 GGCATCGGTTCCTCTCTGC 60.523 63.158 0.00 0.00 0.00 4.26
6256 7687 4.755411 CATACCACACCGTCTTTGACTAT 58.245 43.478 0.00 0.00 0.00 2.12
6280 7711 1.016130 AGATGAGTGTTGGCTTCGCG 61.016 55.000 0.00 0.00 0.00 5.87
6284 7715 0.459585 GAGTGTTGGCTTCGCGGATA 60.460 55.000 6.13 0.00 0.00 2.59
6316 7747 7.609146 TGAGAGAAGCATTTCACTGATGTATTT 59.391 33.333 0.00 0.00 34.88 1.40
6339 7770 5.534207 TCTTTGATTGAGCAAAACATGGT 57.466 34.783 0.00 0.00 43.97 3.55
6380 7811 8.887036 AATTATATCAAAGAGATGTACGTGCA 57.113 30.769 9.28 9.28 37.57 4.57
6384 7815 1.280982 AAGAGATGTACGTGCATGCG 58.719 50.000 24.27 1.59 37.94 4.73
6396 7827 2.146342 GTGCATGCGTGATAGCCTTAT 58.854 47.619 14.09 0.00 36.02 1.73
6403 7865 7.438160 TGCATGCGTGATAGCCTTATATATAAC 59.562 37.037 14.09 0.00 36.02 1.89
6452 7914 9.556030 GTTGTGTAAAAGGTTAAATAGCATCTC 57.444 33.333 0.00 0.00 0.00 2.75
6485 7947 2.618045 GCCACTACCTTGTGCACCTATT 60.618 50.000 15.69 0.00 36.68 1.73
6490 7952 6.482308 CCACTACCTTGTGCACCTATTATAAC 59.518 42.308 15.69 0.00 36.68 1.89
6496 7958 9.640952 ACCTTGTGCACCTATTATAACAAATAT 57.359 29.630 15.69 0.00 0.00 1.28
6561 8023 4.508861 TGTAGTTTTGCGGAGACAACTTAC 59.491 41.667 4.07 2.84 31.83 2.34
6577 8039 9.080097 AGACAACTTACAGAGTACTTGAGTAAT 57.920 33.333 12.94 0.00 37.72 1.89
6597 8059 8.197988 AGTAATGAGTTTATCGACATTGTTCC 57.802 34.615 6.88 0.00 35.19 3.62
6605 8067 2.513753 TCGACATTGTTCCTTGCCAAT 58.486 42.857 0.00 0.00 0.00 3.16
6616 8078 2.094675 CCTTGCCAATACTTCACCCTG 58.905 52.381 0.00 0.00 0.00 4.45
6619 8081 0.392461 GCCAATACTTCACCCTGCGA 60.392 55.000 0.00 0.00 0.00 5.10
6621 8083 0.999406 CAATACTTCACCCTGCGACG 59.001 55.000 0.00 0.00 0.00 5.12
6629 8091 2.887568 CCCTGCGACGAGTCATGC 60.888 66.667 0.00 0.57 0.00 4.06
6638 8100 2.863853 CGAGTCATGCGGCATGTCG 61.864 63.158 34.49 31.57 41.98 4.35
6663 8125 1.751924 GAGTGTATGCGAGGGAGAGTT 59.248 52.381 0.00 0.00 0.00 3.01
6667 8129 1.067821 GTATGCGAGGGAGAGTTGGAG 59.932 57.143 0.00 0.00 0.00 3.86
6712 8178 1.447945 TGTGCGTGAGAGAGAGAGAG 58.552 55.000 0.00 0.00 0.00 3.20
6730 8196 2.026262 AGAGAGAGTCACAGAGGGAGTC 60.026 54.545 0.00 0.00 35.42 3.36
6737 8203 3.117436 AGTCACAGAGGGAGTCCTATACC 60.117 52.174 9.58 0.00 45.05 2.73
6741 8207 3.074836 ACAGAGGGAGTCCTATACCTAGC 59.925 52.174 9.58 0.00 45.05 3.42
6752 8218 7.399634 AGTCCTATACCTAGCTAACAGAGATC 58.600 42.308 0.00 0.00 0.00 2.75
6753 8219 7.017750 AGTCCTATACCTAGCTAACAGAGATCA 59.982 40.741 0.00 0.00 0.00 2.92
6765 8231 5.845985 AACAGAGATCATGTGTTTGTACG 57.154 39.130 4.53 0.00 42.42 3.67
6767 8233 5.538118 ACAGAGATCATGTGTTTGTACGAA 58.462 37.500 3.03 0.00 29.32 3.85
6768 8234 5.405571 ACAGAGATCATGTGTTTGTACGAAC 59.594 40.000 17.69 17.69 29.32 3.95
6775 8241 0.236187 TGTTTGTACGAACGCATGCC 59.764 50.000 18.91 0.00 32.18 4.40
6802 8268 2.043115 AGAGGGAGAGTGGTGTATGTGA 59.957 50.000 0.00 0.00 0.00 3.58
6808 8274 3.360867 AGAGTGGTGTATGTGAGAGAGG 58.639 50.000 0.00 0.00 0.00 3.69
6869 8335 1.269621 ACGAGTATTAGCATCCGCCAC 60.270 52.381 0.00 0.00 39.83 5.01
6874 8340 0.546122 ATTAGCATCCGCCACTGGAA 59.454 50.000 0.00 0.00 42.46 3.53
6881 8347 2.620112 CCGCCACTGGAAGCAGTTG 61.620 63.158 0.00 0.00 37.60 3.16
6893 8365 4.583907 TGGAAGCAGTTGTGATGATCAAAA 59.416 37.500 0.00 0.00 0.00 2.44
6896 8368 5.970317 AGCAGTTGTGATGATCAAAATCA 57.030 34.783 0.71 0.00 45.73 2.57
6917 8389 5.754782 TCACCTTTAATACATCCAGCACAT 58.245 37.500 0.00 0.00 0.00 3.21
6925 8397 2.362736 ACATCCAGCACATGCAGTTAG 58.637 47.619 6.64 0.00 45.16 2.34
6940 8412 5.991328 GCAGTTAGCATTGCTATAGACAA 57.009 39.130 18.62 7.90 41.01 3.18
6982 8454 9.624697 GAACAATAAAACTGTATGCAAGAATCA 57.375 29.630 0.00 0.00 0.00 2.57
7003 8475 5.357257 TCATTAGAGGCGGTTGTTATTCTC 58.643 41.667 0.00 0.00 0.00 2.87
7004 8476 2.693267 AGAGGCGGTTGTTATTCTCC 57.307 50.000 0.00 0.00 0.00 3.71
7006 8478 2.007608 GAGGCGGTTGTTATTCTCCAC 58.992 52.381 0.00 0.00 0.00 4.02
7007 8479 1.349688 AGGCGGTTGTTATTCTCCACA 59.650 47.619 0.00 0.00 0.00 4.17
7011 8488 2.443416 GGTTGTTATTCTCCACACCCC 58.557 52.381 0.00 0.00 0.00 4.95
7013 8490 2.041216 GTTGTTATTCTCCACACCCCCT 59.959 50.000 0.00 0.00 0.00 4.79
7033 8510 5.001232 CCCTCCTTAAATTTCTCGTCAACA 58.999 41.667 0.00 0.00 0.00 3.33
7038 8515 6.485313 TCCTTAAATTTCTCGTCAACACATGT 59.515 34.615 0.00 0.00 0.00 3.21
7039 8516 6.797033 CCTTAAATTTCTCGTCAACACATGTC 59.203 38.462 0.00 0.00 0.00 3.06
7040 8517 4.389664 AATTTCTCGTCAACACATGTCG 57.610 40.909 0.00 0.00 41.11 4.35
7041 8518 2.502213 TTCTCGTCAACACATGTCGT 57.498 45.000 0.00 0.00 40.69 4.34
7048 8525 1.862201 TCAACACATGTCGTCGGTTTC 59.138 47.619 0.00 0.00 0.00 2.78
7058 8535 6.592607 ACATGTCGTCGGTTTCTATTTTACAT 59.407 34.615 0.00 0.00 0.00 2.29
7061 8538 6.529125 TGTCGTCGGTTTCTATTTTACATCTC 59.471 38.462 0.00 0.00 0.00 2.75
7064 8541 6.534079 CGTCGGTTTCTATTTTACATCTCCTT 59.466 38.462 0.00 0.00 0.00 3.36
7066 8543 6.315393 TCGGTTTCTATTTTACATCTCCTTGC 59.685 38.462 0.00 0.00 0.00 4.01
7069 8546 6.903883 TTCTATTTTACATCTCCTTGCGTC 57.096 37.500 0.00 0.00 0.00 5.19
7073 8550 1.557099 TACATCTCCTTGCGTCTGGT 58.443 50.000 0.00 0.00 0.00 4.00
7085 8562 1.241990 CGTCTGGTCAGTTCCTCGGA 61.242 60.000 0.00 0.00 0.00 4.55
7089 8566 1.609794 GGTCAGTTCCTCGGAGGGT 60.610 63.158 23.39 6.44 35.59 4.34
7113 8590 8.319143 GTGTAACCTTGCTAGTCTATTTTTCA 57.681 34.615 0.00 0.00 0.00 2.69
7134 8611 5.385198 TCATATAATTCCCTTGCACTTCCC 58.615 41.667 0.00 0.00 0.00 3.97
7136 8613 0.486879 AATTCCCTTGCACTTCCCCA 59.513 50.000 0.00 0.00 0.00 4.96
7145 8622 1.378762 CACTTCCCCATTCCACGGT 59.621 57.895 0.00 0.00 0.00 4.83
7152 8629 0.251165 CCCATTCCACGGTCAAACCT 60.251 55.000 0.00 0.00 35.66 3.50
7153 8630 1.003812 CCCATTCCACGGTCAAACCTA 59.996 52.381 0.00 0.00 35.66 3.08
7154 8631 2.356135 CCATTCCACGGTCAAACCTAG 58.644 52.381 0.00 0.00 35.66 3.02
7155 8632 1.737793 CATTCCACGGTCAAACCTAGC 59.262 52.381 0.00 0.00 35.66 3.42
7156 8633 0.759959 TTCCACGGTCAAACCTAGCA 59.240 50.000 0.00 0.00 35.66 3.49
7157 8634 0.034337 TCCACGGTCAAACCTAGCAC 59.966 55.000 0.00 0.00 35.66 4.40
7159 8636 0.250124 CACGGTCAAACCTAGCACCA 60.250 55.000 0.00 0.00 35.66 4.17
7161 8638 1.073284 ACGGTCAAACCTAGCACCAAT 59.927 47.619 0.00 0.00 35.66 3.16
7162 8639 1.468520 CGGTCAAACCTAGCACCAATG 59.531 52.381 0.00 0.00 35.66 2.82
7164 8641 1.202348 GTCAAACCTAGCACCAATGGC 59.798 52.381 0.00 0.00 0.00 4.40
7166 8643 0.409484 AAACCTAGCACCAATGGCCT 59.591 50.000 3.32 0.00 0.00 5.19
7167 8644 1.295020 AACCTAGCACCAATGGCCTA 58.705 50.000 3.32 0.00 0.00 3.93
7171 8649 1.486310 CTAGCACCAATGGCCTAGTCA 59.514 52.381 15.42 0.00 0.00 3.41
7211 8689 2.125512 CTCTTCGCCCTTCCGTGG 60.126 66.667 0.00 0.00 0.00 4.94
7244 8722 0.605589 GATCTGCCCATCCTAGACGG 59.394 60.000 0.00 0.00 0.00 4.79
7245 8723 1.476007 ATCTGCCCATCCTAGACGGC 61.476 60.000 0.00 0.00 41.99 5.68
7246 8724 3.506059 CTGCCCATCCTAGACGGCG 62.506 68.421 4.80 4.80 44.71 6.46
7247 8725 3.224324 GCCCATCCTAGACGGCGA 61.224 66.667 16.62 0.00 0.00 5.54
7248 8726 3.043419 CCCATCCTAGACGGCGAG 58.957 66.667 16.62 0.00 0.00 5.03
7249 8727 2.565645 CCCATCCTAGACGGCGAGG 61.566 68.421 16.62 11.91 38.17 4.63
7250 8728 1.828660 CCATCCTAGACGGCGAGGT 60.829 63.158 17.82 1.89 38.03 3.85
7251 8729 1.360551 CATCCTAGACGGCGAGGTG 59.639 63.158 17.82 11.00 38.03 4.00
7252 8730 1.828660 ATCCTAGACGGCGAGGTGG 60.829 63.158 17.82 10.63 38.03 4.61
7253 8731 4.208686 CCTAGACGGCGAGGTGGC 62.209 72.222 16.62 0.00 40.44 5.01
7260 8738 4.899239 GGCGAGGTGGCCGATCTG 62.899 72.222 0.00 0.00 44.40 2.90
7268 8746 2.897350 GGCCGATCTGCCCTTTCG 60.897 66.667 16.84 0.00 46.11 3.46
7269 8747 3.577313 GCCGATCTGCCCTTTCGC 61.577 66.667 0.00 0.00 0.00 4.70
7270 8748 2.125147 CCGATCTGCCCTTTCGCA 60.125 61.111 0.00 0.00 37.19 5.10
7276 8754 4.577677 TGCCCTTTCGCAGTGGCA 62.578 61.111 0.00 0.00 43.07 4.92
7277 8755 3.294493 GCCCTTTCGCAGTGGCAA 61.294 61.111 0.00 0.00 41.24 4.52
7278 8756 2.956987 CCCTTTCGCAGTGGCAAG 59.043 61.111 0.00 0.00 41.24 4.01
7279 8757 1.898574 CCCTTTCGCAGTGGCAAGT 60.899 57.895 0.00 0.00 41.24 3.16
7280 8758 1.455383 CCCTTTCGCAGTGGCAAGTT 61.455 55.000 0.00 0.00 41.24 2.66
7281 8759 0.318107 CCTTTCGCAGTGGCAAGTTG 60.318 55.000 0.00 0.00 41.24 3.16
7282 8760 0.318107 CTTTCGCAGTGGCAAGTTGG 60.318 55.000 4.75 0.00 41.24 3.77
7283 8761 2.348605 TTTCGCAGTGGCAAGTTGGC 62.349 55.000 21.83 21.83 44.03 4.52
7290 8768 3.365265 GGCAAGTTGGCAGACCCG 61.365 66.667 23.44 0.00 43.14 5.28
7291 8769 4.043200 GCAAGTTGGCAGACCCGC 62.043 66.667 4.75 0.00 35.87 6.13
7292 8770 2.594303 CAAGTTGGCAGACCCGCA 60.594 61.111 0.00 0.00 35.87 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.358247 GGAAGGTTCGCTTGCCGA 60.358 61.111 0.00 0.00 45.77 5.54
10 11 1.968540 AGCTGGAAGGTTCGCTTGC 60.969 57.895 0.00 0.00 46.63 4.01
14 15 0.603975 AACTCAGCTGGAAGGTTCGC 60.604 55.000 15.13 0.00 46.63 4.70
15 16 1.270305 TGAACTCAGCTGGAAGGTTCG 60.270 52.381 23.41 6.84 46.63 3.95
27 28 1.000843 TGGACCATCACGTGAACTCAG 59.999 52.381 24.13 11.72 0.00 3.35
28 29 1.044611 TGGACCATCACGTGAACTCA 58.955 50.000 24.13 13.41 0.00 3.41
33 34 1.666553 GCGTTGGACCATCACGTGA 60.667 57.895 22.48 22.48 0.00 4.35
34 35 2.677003 GGCGTTGGACCATCACGTG 61.677 63.158 17.65 9.94 0.00 4.49
36 37 3.487202 CGGCGTTGGACCATCACG 61.487 66.667 13.32 13.32 0.00 4.35
50 51 0.802607 GATCTCGAAGGTGTGACGGC 60.803 60.000 0.00 0.00 0.00 5.68
76 77 0.238289 CATTGTTTGCGAGCTTCGGT 59.762 50.000 7.50 0.00 40.84 4.69
86 87 4.836125 TCTCCTTGAAGACATTGTTTGC 57.164 40.909 0.00 0.00 0.00 3.68
96 97 3.118738 GGCCTCGTTTATCTCCTTGAAGA 60.119 47.826 0.00 0.00 0.00 2.87
97 98 3.198872 GGCCTCGTTTATCTCCTTGAAG 58.801 50.000 0.00 0.00 0.00 3.02
99 100 2.093658 GTGGCCTCGTTTATCTCCTTGA 60.094 50.000 3.32 0.00 0.00 3.02
102 103 1.207329 GTGTGGCCTCGTTTATCTCCT 59.793 52.381 3.32 0.00 0.00 3.69
103 104 1.653151 GTGTGGCCTCGTTTATCTCC 58.347 55.000 3.32 0.00 0.00 3.71
104 105 1.278238 CGTGTGGCCTCGTTTATCTC 58.722 55.000 3.32 0.00 0.00 2.75
105 106 0.739813 GCGTGTGGCCTCGTTTATCT 60.740 55.000 3.32 0.00 34.80 1.98
106 107 1.713830 GCGTGTGGCCTCGTTTATC 59.286 57.895 3.32 0.00 34.80 1.75
107 108 3.884900 GCGTGTGGCCTCGTTTAT 58.115 55.556 3.32 0.00 34.80 1.40
137 138 1.613437 CTCAGGTTTGGTTTGCCGAAT 59.387 47.619 0.00 0.00 40.12 3.34
139 140 0.821711 CCTCAGGTTTGGTTTGCCGA 60.822 55.000 0.00 0.00 37.67 5.54
159 160 3.702048 TGGGCCCGTCGAAGGAAG 61.702 66.667 19.75 4.05 0.00 3.46
194 202 4.020839 GGTAGACTAGTTAACTGGCAACCA 60.021 45.833 22.41 3.37 0.00 3.67
196 204 4.928020 GTGGTAGACTAGTTAACTGGCAAC 59.072 45.833 18.56 12.98 0.00 4.17
198 206 4.413760 AGTGGTAGACTAGTTAACTGGCA 58.586 43.478 18.56 5.35 30.86 4.92
199 207 4.142204 GGAGTGGTAGACTAGTTAACTGGC 60.142 50.000 18.56 10.21 33.83 4.85
201 209 5.014858 TGGGAGTGGTAGACTAGTTAACTG 58.985 45.833 18.56 10.41 33.83 3.16
202 210 5.266709 TGGGAGTGGTAGACTAGTTAACT 57.733 43.478 13.68 13.68 33.83 2.24
203 211 6.832900 ACTATGGGAGTGGTAGACTAGTTAAC 59.167 42.308 0.00 0.00 36.87 2.01
205 213 6.587560 ACTATGGGAGTGGTAGACTAGTTA 57.412 41.667 0.00 0.00 36.87 2.24
206 214 5.469210 ACTATGGGAGTGGTAGACTAGTT 57.531 43.478 0.00 0.00 36.87 2.24
207 215 5.454471 CGTACTATGGGAGTGGTAGACTAGT 60.454 48.000 0.00 0.00 39.39 2.57
208 216 4.996122 CGTACTATGGGAGTGGTAGACTAG 59.004 50.000 0.00 0.00 39.39 2.57
212 220 3.457380 AGTCGTACTATGGGAGTGGTAGA 59.543 47.826 0.00 0.00 39.39 2.59
213 221 3.818180 AGTCGTACTATGGGAGTGGTAG 58.182 50.000 0.00 0.00 39.39 3.18
214 222 3.939740 AGTCGTACTATGGGAGTGGTA 57.060 47.619 0.00 0.00 39.39 3.25
215 223 2.822707 AGTCGTACTATGGGAGTGGT 57.177 50.000 0.00 0.00 39.39 4.16
216 224 3.814283 GACTAGTCGTACTATGGGAGTGG 59.186 52.174 7.22 0.00 39.39 4.00
217 225 4.706035 AGACTAGTCGTACTATGGGAGTG 58.294 47.826 17.07 0.00 35.63 3.51
218 226 5.221621 GGTAGACTAGTCGTACTATGGGAGT 60.222 48.000 17.07 0.00 37.11 3.85
219 227 5.221601 TGGTAGACTAGTCGTACTATGGGAG 60.222 48.000 17.07 0.00 29.08 4.30
220 228 4.655649 TGGTAGACTAGTCGTACTATGGGA 59.344 45.833 17.07 0.00 29.08 4.37
221 229 4.965814 TGGTAGACTAGTCGTACTATGGG 58.034 47.826 17.07 0.00 29.08 4.00
244 252 3.654806 ACTGCTTTCCATAGCCATAGGAT 59.345 43.478 0.00 0.00 40.49 3.24
248 256 4.008074 GCTACTGCTTTCCATAGCCATA 57.992 45.455 0.00 0.00 40.49 2.74
270 278 2.603473 CCCCGTGTGGACCAGAGA 60.603 66.667 0.00 0.00 37.49 3.10
330 338 2.091112 CGAGTCGCCAACAGAGCAG 61.091 63.158 0.00 0.00 0.00 4.24
375 383 3.393800 CGAAGCGATCCAAGTTCCATAT 58.606 45.455 0.00 0.00 0.00 1.78
525 537 6.205658 TGCATGCAAACTGTACACATAGTTAA 59.794 34.615 20.30 0.00 35.28 2.01
565 790 1.003116 GAGCAATTATCAGGTGCGCTG 60.003 52.381 9.73 0.00 43.16 5.18
571 796 2.169352 ACTGAGCGAGCAATTATCAGGT 59.831 45.455 13.36 0.86 41.32 4.00
596 821 6.000219 TCAAAGAAAAGGAGAGAGTTGGATG 59.000 40.000 0.00 0.00 0.00 3.51
604 829 2.982488 AGGGCTCAAAGAAAAGGAGAGA 59.018 45.455 0.00 0.00 0.00 3.10
606 831 3.395941 AGAAGGGCTCAAAGAAAAGGAGA 59.604 43.478 0.00 0.00 0.00 3.71
632 857 1.674221 GCAGAGTACTCACCTGCTTGG 60.674 57.143 24.44 3.95 41.71 3.61
661 886 5.930209 AATGAGGCAGGGGATTAATAGAA 57.070 39.130 0.00 0.00 0.00 2.10
695 921 7.099764 TCTGACAGAAAGGATGATTACTGTTC 58.900 38.462 1.64 0.00 38.43 3.18
697 923 6.611613 TCTGACAGAAAGGATGATTACTGT 57.388 37.500 1.64 0.00 40.49 3.55
698 924 9.258826 CTATTCTGACAGAAAGGATGATTACTG 57.741 37.037 21.29 0.00 37.82 2.74
699 925 8.986991 ACTATTCTGACAGAAAGGATGATTACT 58.013 33.333 21.29 3.67 37.82 2.24
700 926 9.606631 AACTATTCTGACAGAAAGGATGATTAC 57.393 33.333 21.29 0.00 37.82 1.89
701 927 9.823647 GAACTATTCTGACAGAAAGGATGATTA 57.176 33.333 21.29 6.38 37.82 1.75
704 930 7.038729 ACTGAACTATTCTGACAGAAAGGATGA 60.039 37.037 21.29 6.12 37.82 2.92
705 931 7.102346 ACTGAACTATTCTGACAGAAAGGATG 58.898 38.462 21.29 11.82 37.82 3.51
706 932 7.251321 ACTGAACTATTCTGACAGAAAGGAT 57.749 36.000 21.29 11.54 37.82 3.24
707 933 6.672266 ACTGAACTATTCTGACAGAAAGGA 57.328 37.500 21.29 9.33 37.82 3.36
708 934 7.442364 TCAAACTGAACTATTCTGACAGAAAGG 59.558 37.037 21.29 17.57 37.82 3.11
710 936 7.041780 GCTCAAACTGAACTATTCTGACAGAAA 60.042 37.037 21.29 10.17 37.82 2.52
711 937 6.425114 GCTCAAACTGAACTATTCTGACAGAA 59.575 38.462 19.85 19.85 38.78 3.02
712 938 5.928839 GCTCAAACTGAACTATTCTGACAGA 59.071 40.000 0.00 0.00 33.42 3.41
714 940 5.858381 AGCTCAAACTGAACTATTCTGACA 58.142 37.500 2.87 0.00 33.42 3.58
717 943 9.950680 TTTTTAAGCTCAAACTGAACTATTCTG 57.049 29.630 0.00 0.00 35.09 3.02
723 949 6.920210 GCTGATTTTTAAGCTCAAACTGAACT 59.080 34.615 0.00 0.00 36.47 3.01
724 950 6.697019 TGCTGATTTTTAAGCTCAAACTGAAC 59.303 34.615 0.00 0.00 40.21 3.18
727 953 7.383029 TGATTGCTGATTTTTAAGCTCAAACTG 59.617 33.333 0.00 0.00 40.21 3.16
728 954 7.436118 TGATTGCTGATTTTTAAGCTCAAACT 58.564 30.769 0.00 0.00 40.21 2.66
729 955 7.642071 TGATTGCTGATTTTTAAGCTCAAAC 57.358 32.000 0.00 0.00 40.21 2.93
733 959 6.803642 AGGATGATTGCTGATTTTTAAGCTC 58.196 36.000 0.00 0.00 40.21 4.09
734 960 6.786967 AGGATGATTGCTGATTTTTAAGCT 57.213 33.333 0.00 0.00 40.21 3.74
735 961 7.763071 AGAAAGGATGATTGCTGATTTTTAAGC 59.237 33.333 0.00 0.00 39.96 3.09
736 962 9.084164 CAGAAAGGATGATTGCTGATTTTTAAG 57.916 33.333 0.00 0.00 0.00 1.85
737 963 8.587608 ACAGAAAGGATGATTGCTGATTTTTAA 58.412 29.630 1.48 0.00 0.00 1.52
743 969 4.851843 TGACAGAAAGGATGATTGCTGAT 58.148 39.130 1.48 0.00 0.00 2.90
744 970 4.019950 TCTGACAGAAAGGATGATTGCTGA 60.020 41.667 1.64 0.00 0.00 4.26
745 971 4.259356 TCTGACAGAAAGGATGATTGCTG 58.741 43.478 1.64 0.00 0.00 4.41
746 972 4.564782 TCTGACAGAAAGGATGATTGCT 57.435 40.909 1.64 0.00 0.00 3.91
747 973 5.831702 ATTCTGACAGAAAGGATGATTGC 57.168 39.130 21.29 0.00 37.82 3.56
748 974 9.039870 GTACTATTCTGACAGAAAGGATGATTG 57.960 37.037 21.29 7.19 37.82 2.67
749 975 8.207545 GGTACTATTCTGACAGAAAGGATGATT 58.792 37.037 21.29 5.54 37.82 2.57
750 976 7.345653 TGGTACTATTCTGACAGAAAGGATGAT 59.654 37.037 21.29 6.25 37.82 2.45
773 1007 4.423625 ACACTCTTAAGCTCAAACTGGT 57.576 40.909 0.00 0.00 0.00 4.00
866 1102 9.202273 CTGGTGATTATTACTCTCTTCTAATGC 57.798 37.037 0.00 0.00 0.00 3.56
877 1113 5.023533 TGGCACTCTGGTGATTATTACTC 57.976 43.478 0.00 0.00 45.61 2.59
915 1151 1.852942 CATGCTGCAGAAATGGCATC 58.147 50.000 20.43 0.00 42.49 3.91
957 1193 0.319297 GTAGCCCCGTATAAGCCGTG 60.319 60.000 0.00 0.00 0.00 4.94
967 1203 1.328430 GCAGAGGTAAGTAGCCCCGT 61.328 60.000 0.00 0.00 0.00 5.28
968 1204 1.327690 TGCAGAGGTAAGTAGCCCCG 61.328 60.000 0.00 0.00 0.00 5.73
969 1205 0.466124 CTGCAGAGGTAAGTAGCCCC 59.534 60.000 8.42 0.00 0.00 5.80
970 1206 1.134670 CACTGCAGAGGTAAGTAGCCC 60.135 57.143 23.35 0.00 0.00 5.19
971 1207 1.740718 GCACTGCAGAGGTAAGTAGCC 60.741 57.143 23.35 0.00 0.00 3.93
972 1208 1.066858 TGCACTGCAGAGGTAAGTAGC 60.067 52.381 23.35 9.80 33.32 3.58
981 1220 1.804601 TTCTGATGTGCACTGCAGAG 58.195 50.000 28.25 14.77 40.08 3.35
1032 1271 4.582656 CACAGTAGGAGTAGGGAGAGAATG 59.417 50.000 0.00 0.00 0.00 2.67
1140 1379 3.181510 CCGTTGTAATCTTTGGCACTAGC 60.182 47.826 0.00 0.00 41.10 3.42
1142 1381 4.020928 TCTCCGTTGTAATCTTTGGCACTA 60.021 41.667 0.00 0.00 0.00 2.74
1154 1393 0.320073 CCCGCTGTTCTCCGTTGTAA 60.320 55.000 0.00 0.00 0.00 2.41
1268 1507 4.617520 TCCAACGGCGCTTGAGCA 62.618 61.111 19.00 4.82 42.21 4.26
1321 1560 1.740296 CGACGGCCTGGTAACCTTG 60.740 63.158 0.00 0.00 0.00 3.61
1353 1592 5.019498 CCAAAATATTGAGCGTTCACGTAC 58.981 41.667 0.00 0.00 39.12 3.67
1473 1712 7.118390 AGAGGTTGAATTGAATTGACTCTTACG 59.882 37.037 0.00 0.00 0.00 3.18
1481 1720 7.710475 GGACAAAAAGAGGTTGAATTGAATTGA 59.290 33.333 0.00 0.00 0.00 2.57
1482 1721 7.712205 AGGACAAAAAGAGGTTGAATTGAATTG 59.288 33.333 0.00 0.00 0.00 2.32
1483 1722 7.795047 AGGACAAAAAGAGGTTGAATTGAATT 58.205 30.769 0.00 0.00 0.00 2.17
1484 1723 7.365497 AGGACAAAAAGAGGTTGAATTGAAT 57.635 32.000 0.00 0.00 0.00 2.57
1485 1724 6.790232 AGGACAAAAAGAGGTTGAATTGAA 57.210 33.333 0.00 0.00 0.00 2.69
1514 1753 7.511959 AAAAGTGAACAGAGGGAGTAAAATC 57.488 36.000 0.00 0.00 0.00 2.17
1523 1762 4.640647 GGCCTTATAAAAGTGAACAGAGGG 59.359 45.833 0.00 0.00 0.00 4.30
1524 1763 5.501156 AGGCCTTATAAAAGTGAACAGAGG 58.499 41.667 0.00 0.00 0.00 3.69
1525 1764 6.655003 TCAAGGCCTTATAAAAGTGAACAGAG 59.345 38.462 20.00 0.00 0.00 3.35
1526 1765 6.539173 TCAAGGCCTTATAAAAGTGAACAGA 58.461 36.000 20.00 2.74 0.00 3.41
1527 1766 6.817765 TCAAGGCCTTATAAAAGTGAACAG 57.182 37.500 20.00 0.00 0.00 3.16
1528 1767 7.001674 TCTTCAAGGCCTTATAAAAGTGAACA 58.998 34.615 20.00 0.21 0.00 3.18
1529 1768 7.040686 TGTCTTCAAGGCCTTATAAAAGTGAAC 60.041 37.037 20.00 13.04 0.00 3.18
1530 1769 7.001674 TGTCTTCAAGGCCTTATAAAAGTGAA 58.998 34.615 20.00 14.48 0.00 3.18
1531 1770 6.539173 TGTCTTCAAGGCCTTATAAAAGTGA 58.461 36.000 20.00 6.54 0.00 3.41
1532 1771 6.817765 TGTCTTCAAGGCCTTATAAAAGTG 57.182 37.500 20.00 3.72 0.00 3.16
1533 1772 8.422577 AAATGTCTTCAAGGCCTTATAAAAGT 57.577 30.769 20.00 0.00 0.00 2.66
1534 1773 8.522830 TGAAATGTCTTCAAGGCCTTATAAAAG 58.477 33.333 20.00 18.05 0.00 2.27
1535 1774 8.415950 TGAAATGTCTTCAAGGCCTTATAAAA 57.584 30.769 20.00 9.43 0.00 1.52
1536 1775 7.888021 TCTGAAATGTCTTCAAGGCCTTATAAA 59.112 33.333 20.00 11.96 0.00 1.40
1537 1776 7.402054 TCTGAAATGTCTTCAAGGCCTTATAA 58.598 34.615 20.00 14.54 0.00 0.98
1538 1777 6.957631 TCTGAAATGTCTTCAAGGCCTTATA 58.042 36.000 20.00 6.65 0.00 0.98
1539 1778 5.819991 TCTGAAATGTCTTCAAGGCCTTAT 58.180 37.500 20.00 3.68 0.00 1.73
1540 1779 5.241403 TCTGAAATGTCTTCAAGGCCTTA 57.759 39.130 20.00 2.00 0.00 2.69
1541 1780 4.104383 TCTGAAATGTCTTCAAGGCCTT 57.896 40.909 13.78 13.78 0.00 4.35
1542 1781 3.795688 TCTGAAATGTCTTCAAGGCCT 57.204 42.857 0.00 0.00 0.00 5.19
1543 1782 6.096001 ACATTATCTGAAATGTCTTCAAGGCC 59.904 38.462 0.00 0.00 44.79 5.19
1544 1783 6.971184 CACATTATCTGAAATGTCTTCAAGGC 59.029 38.462 12.25 0.00 44.79 4.35
1545 1784 6.971184 GCACATTATCTGAAATGTCTTCAAGG 59.029 38.462 12.25 4.96 44.79 3.61
1546 1785 7.532571 TGCACATTATCTGAAATGTCTTCAAG 58.467 34.615 12.25 5.42 44.79 3.02
1547 1786 7.451501 TGCACATTATCTGAAATGTCTTCAA 57.548 32.000 12.25 0.55 44.79 2.69
1548 1787 7.451501 TTGCACATTATCTGAAATGTCTTCA 57.548 32.000 12.25 9.40 44.79 3.02
1549 1788 7.008992 GCTTTGCACATTATCTGAAATGTCTTC 59.991 37.037 12.25 7.82 44.79 2.87
1550 1789 6.810182 GCTTTGCACATTATCTGAAATGTCTT 59.190 34.615 12.25 0.00 44.79 3.01
1551 1790 6.071784 TGCTTTGCACATTATCTGAAATGTCT 60.072 34.615 12.25 0.00 44.79 3.41
1552 1791 6.094719 TGCTTTGCACATTATCTGAAATGTC 58.905 36.000 12.25 9.51 44.79 3.06
1554 1793 6.034577 CACTGCTTTGCACATTATCTGAAATG 59.965 38.462 0.00 9.50 41.65 2.32
1555 1794 6.097356 CACTGCTTTGCACATTATCTGAAAT 58.903 36.000 0.00 0.00 33.79 2.17
1556 1795 5.463286 CACTGCTTTGCACATTATCTGAAA 58.537 37.500 0.00 0.00 33.79 2.69
1557 1796 4.616604 GCACTGCTTTGCACATTATCTGAA 60.617 41.667 5.36 0.00 42.49 3.02
1558 1797 3.119743 GCACTGCTTTGCACATTATCTGA 60.120 43.478 5.36 0.00 42.49 3.27
1559 1798 3.176708 GCACTGCTTTGCACATTATCTG 58.823 45.455 5.36 0.00 42.49 2.90
1560 1799 3.498927 GCACTGCTTTGCACATTATCT 57.501 42.857 5.36 0.00 42.49 1.98
1569 1808 5.750650 ACAATTAAAAATGCACTGCTTTGC 58.249 33.333 1.98 3.40 43.31 3.68
1570 1809 7.042590 TCAGACAATTAAAAATGCACTGCTTTG 60.043 33.333 1.98 0.00 0.00 2.77
1571 1810 6.985645 TCAGACAATTAAAAATGCACTGCTTT 59.014 30.769 1.98 0.00 0.00 3.51
1572 1811 6.514947 TCAGACAATTAAAAATGCACTGCTT 58.485 32.000 1.98 0.00 0.00 3.91
1573 1812 6.088016 TCAGACAATTAAAAATGCACTGCT 57.912 33.333 1.98 0.00 0.00 4.24
1574 1813 6.768029 TTCAGACAATTAAAAATGCACTGC 57.232 33.333 0.00 0.00 0.00 4.40
1575 1814 7.167302 TCGTTTCAGACAATTAAAAATGCACTG 59.833 33.333 0.00 0.00 0.00 3.66
1576 1815 7.167468 GTCGTTTCAGACAATTAAAAATGCACT 59.833 33.333 0.00 0.00 40.65 4.40
1577 1816 7.167468 AGTCGTTTCAGACAATTAAAAATGCAC 59.833 33.333 0.00 0.00 43.24 4.57
1578 1817 7.199766 AGTCGTTTCAGACAATTAAAAATGCA 58.800 30.769 0.00 0.00 43.24 3.96
1579 1818 7.623268 AGTCGTTTCAGACAATTAAAAATGC 57.377 32.000 0.00 0.00 43.24 3.56
1592 1831 9.672086 CCATTTATTTTTGTAAGTCGTTTCAGA 57.328 29.630 0.00 0.00 0.00 3.27
1593 1832 9.672086 TCCATTTATTTTTGTAAGTCGTTTCAG 57.328 29.630 0.00 0.00 0.00 3.02
1594 1833 9.672086 CTCCATTTATTTTTGTAAGTCGTTTCA 57.328 29.630 0.00 0.00 0.00 2.69
1595 1834 9.124807 CCTCCATTTATTTTTGTAAGTCGTTTC 57.875 33.333 0.00 0.00 0.00 2.78
1596 1835 8.852135 TCCTCCATTTATTTTTGTAAGTCGTTT 58.148 29.630 0.00 0.00 0.00 3.60
1597 1836 8.398878 TCCTCCATTTATTTTTGTAAGTCGTT 57.601 30.769 0.00 0.00 0.00 3.85
1598 1837 7.989416 TCCTCCATTTATTTTTGTAAGTCGT 57.011 32.000 0.00 0.00 0.00 4.34
1599 1838 8.512138 ACTTCCTCCATTTATTTTTGTAAGTCG 58.488 33.333 0.00 0.00 0.00 4.18
1626 1865 9.465199 AGCAAGCATCCCAAAATAAAATAAAAT 57.535 25.926 0.00 0.00 0.00 1.82
1627 1866 8.860780 AGCAAGCATCCCAAAATAAAATAAAA 57.139 26.923 0.00 0.00 0.00 1.52
1629 1868 9.545105 CATAGCAAGCATCCCAAAATAAAATAA 57.455 29.630 0.00 0.00 0.00 1.40
1630 1869 7.656948 GCATAGCAAGCATCCCAAAATAAAATA 59.343 33.333 0.00 0.00 0.00 1.40
1631 1870 6.484308 GCATAGCAAGCATCCCAAAATAAAAT 59.516 34.615 0.00 0.00 0.00 1.82
1632 1871 5.816777 GCATAGCAAGCATCCCAAAATAAAA 59.183 36.000 0.00 0.00 0.00 1.52
1633 1872 5.129155 AGCATAGCAAGCATCCCAAAATAAA 59.871 36.000 0.00 0.00 0.00 1.40
1665 1904 5.620206 TCTCAAGCTGACCAAAATCAGTAA 58.380 37.500 4.80 0.00 46.65 2.24
1683 1922 1.683943 AGCAAGCAAGCTGTTCTCAA 58.316 45.000 1.81 0.00 44.66 3.02
1869 2374 7.368833 CGTTATCGAAATTCTATCACCCTAGT 58.631 38.462 0.00 0.00 39.71 2.57
2073 2587 2.109126 GTAGCAGCAAGAAGGGCGG 61.109 63.158 0.00 0.00 36.08 6.13
2075 2589 3.490890 CGTAGCAGCAAGAAGGGC 58.509 61.111 0.00 0.00 0.00 5.19
2226 2740 1.899814 TGGCAGTCTATTGGTCGAACT 59.100 47.619 0.33 0.00 0.00 3.01
2343 2857 8.491045 AAATTTCCTTAAATCCAAGTCCAAGA 57.509 30.769 0.00 0.00 34.12 3.02
2382 2896 9.601810 ATGATACTATTATACCAGACTGGAACA 57.398 33.333 28.56 12.54 40.96 3.18
2444 2958 3.829601 AGGACGATGCTCCTTAATCTAGG 59.170 47.826 0.00 0.00 37.37 3.02
2445 2959 4.321601 CCAGGACGATGCTCCTTAATCTAG 60.322 50.000 0.00 0.00 38.77 2.43
2489 3006 7.440523 AATCTTGGATGAACAACTGTAAGAC 57.559 36.000 0.00 0.00 37.43 3.01
2519 3036 7.585579 TGCAAAGCTATGAATAAATCCATGA 57.414 32.000 0.00 0.00 0.00 3.07
2572 3953 5.258051 AGTGTCCAACAAAAAGAGTGGTTA 58.742 37.500 0.00 0.00 0.00 2.85
2735 4121 7.432252 CCTTTGTCACAAAATAAGTGTCTCAAC 59.568 37.037 4.13 0.00 38.16 3.18
2753 4139 4.017808 GCTAGAGAGTACTCCCTTTGTCA 58.982 47.826 19.38 0.00 43.53 3.58
2757 4143 3.367321 GTGGCTAGAGAGTACTCCCTTT 58.633 50.000 19.38 0.09 43.53 3.11
2758 4144 2.358405 GGTGGCTAGAGAGTACTCCCTT 60.358 54.545 19.38 7.82 43.53 3.95
2803 4189 4.074970 AGACAAAAGTCAAGGCATACCAG 58.925 43.478 0.00 0.00 39.06 4.00
2806 4192 4.022849 AGCAAGACAAAAGTCAAGGCATAC 60.023 41.667 0.00 0.00 0.00 2.39
3082 4470 2.224867 ACAACCTGCCAGTATGCTTTCT 60.225 45.455 0.00 0.00 31.97 2.52
3153 4541 4.462483 ACGGAGGCAACACAATAAATTCAT 59.538 37.500 0.00 0.00 41.41 2.57
3298 4691 8.768397 TCAATAGTCCTGCCTATTTAAGAAGAA 58.232 33.333 0.00 0.00 35.87 2.52
3299 4692 8.319057 TCAATAGTCCTGCCTATTTAAGAAGA 57.681 34.615 0.00 0.00 35.87 2.87
3300 4693 7.172361 GCTCAATAGTCCTGCCTATTTAAGAAG 59.828 40.741 0.00 0.00 35.87 2.85
3301 4694 6.992715 GCTCAATAGTCCTGCCTATTTAAGAA 59.007 38.462 0.00 0.00 35.87 2.52
3323 4716 2.680312 TGTTGCATCTACAGGAGCTC 57.320 50.000 4.71 4.71 0.00 4.09
3450 4843 5.129650 TGGAATTGACCGATGACTATGGTTA 59.870 40.000 0.00 0.00 35.75 2.85
3459 4852 1.843206 TGGGATGGAATTGACCGATGA 59.157 47.619 0.00 0.00 0.00 2.92
3466 4859 3.824001 TGAAAGGTGGGATGGAATTGA 57.176 42.857 0.00 0.00 0.00 2.57
3496 4889 6.712547 AGAGACCAAAAATACACTTCTTCCTG 59.287 38.462 0.00 0.00 0.00 3.86
3624 5017 1.001624 GCCATTTGCGCAAAATCTCC 58.998 50.000 36.42 19.77 36.28 3.71
3635 5028 0.239082 GCTTTTTGGCAGCCATTTGC 59.761 50.000 17.09 13.69 43.34 3.68
3644 5037 5.182760 AGTTTCAATTTTGTGCTTTTTGGCA 59.817 32.000 0.00 0.00 40.15 4.92
3652 5045 5.659463 TGCTTACAGTTTCAATTTTGTGCT 58.341 33.333 0.00 0.00 0.00 4.40
3668 5061 7.880160 AATTGCCTTATATTGACTGCTTACA 57.120 32.000 0.00 0.00 0.00 2.41
3675 5068 8.732746 ACTCGTTAAATTGCCTTATATTGACT 57.267 30.769 0.00 0.00 0.00 3.41
3800 5201 9.927668 AAGTCATGTAAATGGGAAACATAAAAG 57.072 29.630 0.00 0.00 39.40 2.27
3857 5258 3.330110 TGGATCCCAACATTGCCAAAATT 59.670 39.130 9.90 0.00 0.00 1.82
3859 5260 2.333069 TGGATCCCAACATTGCCAAAA 58.667 42.857 9.90 0.00 0.00 2.44
3952 5353 1.658095 CAAAACAACAGTTGGCCAACG 59.342 47.619 36.47 31.55 45.50 4.10
3953 5354 2.006169 CCAAAACAACAGTTGGCCAAC 58.994 47.619 36.62 36.62 38.04 3.77
3962 5363 2.166254 ACTTGAGGCACCAAAACAACAG 59.834 45.455 0.00 0.00 0.00 3.16
4008 5409 4.698201 TGTGTCTGTCCCATTTGAAGTA 57.302 40.909 0.00 0.00 0.00 2.24
4307 5709 9.651913 GTGGGAATGCTATAAATGAAAAAGAAA 57.348 29.630 0.00 0.00 0.00 2.52
4321 5723 7.297614 ACTACCAAAATATGTGGGAATGCTAT 58.702 34.615 9.84 0.00 40.75 2.97
4324 5726 5.594317 AGACTACCAAAATATGTGGGAATGC 59.406 40.000 9.84 0.00 40.75 3.56
4347 5749 6.931840 GGAAAGTATGAAACTAGCCAGGATAG 59.068 42.308 10.43 10.43 37.50 2.08
4467 5869 1.353804 GCCGTTCGTTTTGCACAGA 59.646 52.632 0.00 0.00 0.00 3.41
4497 5918 7.331934 TCGAAACAAGATAGATTTGGTCTCTTG 59.668 37.037 8.60 8.60 41.43 3.02
4515 5936 9.332301 CAAGTTTTACAGTTAACTTCGAAACAA 57.668 29.630 24.60 7.02 41.34 2.83
4521 5942 8.606602 ACCTTACAAGTTTTACAGTTAACTTCG 58.393 33.333 5.07 0.00 41.34 3.79
4601 6022 9.081997 CATTTTTGTTAGAACTGCAAAAGTACA 57.918 29.630 0.00 0.00 41.25 2.90
4605 6026 6.421405 GGCATTTTTGTTAGAACTGCAAAAG 58.579 36.000 13.75 8.63 41.25 2.27
4643 6064 9.762381 TGAAATGAAAACCTAATAGGGTTGTAT 57.238 29.630 10.82 5.53 46.62 2.29
4673 6094 6.738453 GCAATGACACCCTAAACAACAGAAAT 60.738 38.462 0.00 0.00 0.00 2.17
4798 6220 3.957497 TCAAGCAGAGAGATCTAACCTCC 59.043 47.826 0.00 0.00 0.00 4.30
4805 6227 4.583907 TCAATCGATCAAGCAGAGAGATCT 59.416 41.667 0.00 0.00 36.80 2.75
4837 6259 1.871039 TCGCTTTTCTGCCAGTGTAAC 59.129 47.619 0.00 0.00 0.00 2.50
4842 6264 1.230324 GTCTTCGCTTTTCTGCCAGT 58.770 50.000 0.00 0.00 0.00 4.00
4846 6268 1.230324 AGGTGTCTTCGCTTTTCTGC 58.770 50.000 0.00 0.00 0.00 4.26
4847 6269 3.878245 GAAAGGTGTCTTCGCTTTTCTG 58.122 45.455 8.39 0.00 42.66 3.02
4896 6318 1.134936 TGCAGTTATTCGGAAGCGCTA 60.135 47.619 12.05 0.00 0.00 4.26
4898 6320 0.026803 CTGCAGTTATTCGGAAGCGC 59.973 55.000 5.25 0.00 0.00 5.92
4965 6387 3.128938 CACACCTTACTCCTCTAGTTCCG 59.871 52.174 0.00 0.00 39.80 4.30
4974 6396 2.299326 ACCGTACACACCTTACTCCT 57.701 50.000 0.00 0.00 0.00 3.69
4989 6411 2.410730 CGAAAGCTTTGTCGATAACCGT 59.589 45.455 18.30 0.00 39.64 4.83
5009 6431 9.746711 CAACTTTAGATTTTCAGAGATACAACG 57.253 33.333 0.00 0.00 0.00 4.10
5093 6515 2.964464 ACAGGAACCATGTGCAATCAAA 59.036 40.909 0.00 0.00 0.00 2.69
5122 6544 2.171448 CCCTCTTAATACCAGCACTGCT 59.829 50.000 0.00 0.00 40.77 4.24
5150 6572 2.368875 ACAGATGTTGTTCGTCCCTCTT 59.631 45.455 0.00 0.00 36.31 2.85
5202 6624 1.145598 CCTCACTGCCATCTCGCAT 59.854 57.895 0.00 0.00 38.30 4.73
5214 6636 0.957395 CGCTTTGCATCCACCTCACT 60.957 55.000 0.00 0.00 0.00 3.41
5219 6641 1.795162 CGAATTCGCTTTGCATCCACC 60.795 52.381 15.93 0.00 0.00 4.61
5385 6807 6.717084 TGTCTACAGTCCACATATGATCCTAG 59.283 42.308 10.38 0.00 0.00 3.02
5387 6809 5.303078 GTGTCTACAGTCCACATATGATCCT 59.697 44.000 10.38 0.00 0.00 3.24
5390 6812 6.737720 ATGTGTCTACAGTCCACATATGAT 57.262 37.500 10.38 0.00 45.36 2.45
5514 6936 9.407380 TGTGCACATTCTTATAAAGGTCATAAT 57.593 29.630 17.42 0.00 0.00 1.28
5555 6977 7.994911 TCCTCATGCTACTTATCACATTCAAAT 59.005 33.333 0.00 0.00 0.00 2.32
5574 6996 3.492309 CCTTCCGAGTTCTGATCCTCATG 60.492 52.174 0.00 0.00 0.00 3.07
5575 6997 2.697751 CCTTCCGAGTTCTGATCCTCAT 59.302 50.000 0.00 0.00 0.00 2.90
5576 6998 2.103373 CCTTCCGAGTTCTGATCCTCA 58.897 52.381 0.00 0.00 0.00 3.86
5577 6999 1.202475 GCCTTCCGAGTTCTGATCCTC 60.202 57.143 0.00 0.00 0.00 3.71
5578 7000 0.827368 GCCTTCCGAGTTCTGATCCT 59.173 55.000 0.00 0.00 0.00 3.24
5579 7001 0.827368 AGCCTTCCGAGTTCTGATCC 59.173 55.000 0.00 0.00 0.00 3.36
5583 7006 1.301677 GCCAAGCCTTCCGAGTTCTG 61.302 60.000 0.00 0.00 0.00 3.02
5591 7014 3.206964 GTTGTATCTAGCCAAGCCTTCC 58.793 50.000 0.00 0.00 0.00 3.46
5596 7019 8.624776 AGATTAATTTGTTGTATCTAGCCAAGC 58.375 33.333 0.00 0.00 0.00 4.01
5618 7041 3.642848 ACAGCACACCCATGAAAAAGATT 59.357 39.130 0.00 0.00 0.00 2.40
5620 7043 2.665165 ACAGCACACCCATGAAAAAGA 58.335 42.857 0.00 0.00 0.00 2.52
5622 7045 4.586421 TGAATACAGCACACCCATGAAAAA 59.414 37.500 0.00 0.00 0.00 1.94
5623 7046 4.148079 TGAATACAGCACACCCATGAAAA 58.852 39.130 0.00 0.00 0.00 2.29
5673 7096 4.160252 AGAAATGCCGGAATTTGTGCTAAT 59.840 37.500 25.65 0.00 29.89 1.73
5733 7156 4.459337 ACAAGAGCCACCTATGCTTAAAAC 59.541 41.667 0.00 0.00 39.69 2.43
5740 7163 6.070767 TCCTATATTACAAGAGCCACCTATGC 60.071 42.308 0.00 0.00 0.00 3.14
5776 7203 7.116233 CGGTTTTAAGTATTTCTGCTTTGCAAT 59.884 33.333 0.00 0.00 38.41 3.56
5783 7210 5.310451 TCCACGGTTTTAAGTATTTCTGCT 58.690 37.500 0.00 0.00 0.00 4.24
5789 7216 9.074576 AGAGAAAATTCCACGGTTTTAAGTATT 57.925 29.630 0.00 0.00 0.00 1.89
5835 7264 7.244886 TCAGTAGGATTTCTGTGAGATTCAA 57.755 36.000 0.00 0.00 33.89 2.69
5845 7274 7.278868 GTGAGGTACATTTCAGTAGGATTTCTG 59.721 40.741 0.00 0.00 0.00 3.02
5884 7313 3.636282 TCTTTTGCCTCGCCTTAAAAC 57.364 42.857 0.00 0.00 0.00 2.43
5936 7365 9.781834 CATAACTAAGGTTTTATTTGCATTCGA 57.218 29.630 0.00 0.00 36.92 3.71
5937 7366 9.567848 ACATAACTAAGGTTTTATTTGCATTCG 57.432 29.630 0.00 0.00 36.92 3.34
6007 7438 2.826128 ACCTTGAGAATGTACTGCTCGA 59.174 45.455 0.00 0.00 0.00 4.04
6050 7481 6.352526 CAAATACGTGAATCCGCTAATACAC 58.647 40.000 0.00 0.00 0.00 2.90
6070 7501 1.288932 CTGGAGGGGGAATGTCCAAAT 59.711 52.381 0.00 0.00 39.91 2.32
6153 7584 2.573009 TCTGATCTCATGGGAGCAAACA 59.427 45.455 15.56 0.00 41.13 2.83
6172 7603 2.689983 GGAACCGATGCCATGAAATTCT 59.310 45.455 0.00 0.00 0.00 2.40
6181 7612 1.900351 CAGAGAGGAACCGATGCCA 59.100 57.895 0.00 0.00 0.00 4.92
6200 7631 2.662535 TCACCCATTATCCTGCATGG 57.337 50.000 0.00 0.00 39.92 3.66
6212 7643 2.174210 CTCCCATGAAGACATCACCCAT 59.826 50.000 0.00 0.00 41.93 4.00
6256 7687 2.936919 AGCCAACACTCATCTTGTCA 57.063 45.000 0.00 0.00 0.00 3.58
6280 7711 3.465742 TGCTTCTCTCATGCAGTATCC 57.534 47.619 0.00 0.00 31.63 2.59
6284 7715 3.439476 GTGAAATGCTTCTCTCATGCAGT 59.561 43.478 0.00 0.00 38.50 4.40
6316 7747 5.916318 ACCATGTTTTGCTCAATCAAAGAA 58.084 33.333 0.00 0.00 37.27 2.52
6354 7785 9.325198 TGCACGTACATCTCTTTGATATAATTT 57.675 29.630 0.00 0.00 33.36 1.82
6367 7798 0.298707 CACGCATGCACGTACATCTC 59.701 55.000 19.57 0.00 46.34 2.75
6375 7806 1.431488 AAGGCTATCACGCATGCACG 61.431 55.000 19.57 7.82 39.50 5.34
6376 7807 1.581934 TAAGGCTATCACGCATGCAC 58.418 50.000 19.57 0.00 0.00 4.57
6396 7827 9.958180 AAGCCACATATTGTGCTATGTTATATA 57.042 29.630 2.09 0.00 46.51 0.86
6403 7865 6.973843 ACATAAAGCCACATATTGTGCTATG 58.026 36.000 2.09 8.23 46.51 2.23
6452 7914 4.737855 AGGTAGTGGCTAAGTACATGTG 57.262 45.455 9.11 0.00 36.54 3.21
6511 7973 6.715344 TTTAGCTTGACGACGATAACATTT 57.285 33.333 0.00 0.00 0.00 2.32
6519 7981 3.386486 ACATGTTTTAGCTTGACGACGA 58.614 40.909 0.00 0.00 0.00 4.20
6561 8023 9.227490 CGATAAACTCATTACTCAAGTACTCTG 57.773 37.037 0.00 0.00 0.00 3.35
6577 8039 5.106712 GCAAGGAACAATGTCGATAAACTCA 60.107 40.000 0.00 0.00 0.00 3.41
6597 8059 1.474077 GCAGGGTGAAGTATTGGCAAG 59.526 52.381 5.96 0.00 0.00 4.01
6605 8067 0.892358 ACTCGTCGCAGGGTGAAGTA 60.892 55.000 0.00 0.00 0.00 2.24
6619 8081 1.811266 GACATGCCGCATGACTCGT 60.811 57.895 34.59 15.71 43.81 4.18
6621 8083 3.009140 CGACATGCCGCATGACTC 58.991 61.111 34.59 22.67 43.81 3.36
6638 8100 1.299468 CCTCGCATACACTCCGAGC 60.299 63.158 3.94 0.00 45.08 5.03
6639 8101 1.101635 TCCCTCGCATACACTCCGAG 61.102 60.000 2.58 2.58 45.77 4.63
6654 8116 1.872773 GGATCACTCCAACTCTCCCT 58.127 55.000 0.00 0.00 41.64 4.20
6667 8129 6.821388 ACACTCTCCATATAACTTGGATCAC 58.179 40.000 0.00 0.00 42.26 3.06
6680 8142 2.036604 TCACGCACAAACACTCTCCATA 59.963 45.455 0.00 0.00 0.00 2.74
6682 8144 0.176910 TCACGCACAAACACTCTCCA 59.823 50.000 0.00 0.00 0.00 3.86
6683 8145 0.861837 CTCACGCACAAACACTCTCC 59.138 55.000 0.00 0.00 0.00 3.71
6712 8178 1.005450 AGGACTCCCTCTGTGACTCTC 59.995 57.143 0.00 0.00 38.86 3.20
6730 8196 7.613801 ACATGATCTCTGTTAGCTAGGTATAGG 59.386 40.741 0.00 0.00 0.00 2.57
6737 8203 6.815641 ACAAACACATGATCTCTGTTAGCTAG 59.184 38.462 0.00 0.00 0.00 3.42
6741 8207 6.806739 TCGTACAAACACATGATCTCTGTTAG 59.193 38.462 0.00 0.00 0.00 2.34
6752 8218 2.654426 TGCGTTCGTACAAACACATG 57.346 45.000 0.00 0.00 0.00 3.21
6753 8219 2.664424 GCATGCGTTCGTACAAACACAT 60.664 45.455 0.00 0.00 33.38 3.21
6765 8231 1.269517 CCTCTCTCTAGGCATGCGTTC 60.270 57.143 19.28 0.56 0.00 3.95
6767 8233 1.112315 CCCTCTCTCTAGGCATGCGT 61.112 60.000 18.09 18.09 35.09 5.24
6768 8234 0.825425 TCCCTCTCTCTAGGCATGCG 60.825 60.000 12.44 0.00 35.09 4.73
6775 8241 2.241176 ACACCACTCTCCCTCTCTCTAG 59.759 54.545 0.00 0.00 0.00 2.43
6814 8280 5.935206 TGTCTCGATCTATCTGTCACTATCC 59.065 44.000 0.00 0.00 0.00 2.59
6817 8283 5.919755 AGTGTCTCGATCTATCTGTCACTA 58.080 41.667 0.00 0.00 32.95 2.74
6820 8286 5.919755 ACTAGTGTCTCGATCTATCTGTCA 58.080 41.667 0.00 0.00 0.00 3.58
6869 8335 3.340928 TGATCATCACAACTGCTTCCAG 58.659 45.455 0.00 0.00 44.80 3.86
6874 8340 5.706916 GTGATTTTGATCATCACAACTGCT 58.293 37.500 18.72 0.00 46.74 4.24
6893 8365 5.754782 TGTGCTGGATGTATTAAAGGTGAT 58.245 37.500 0.00 0.00 0.00 3.06
6896 8368 4.339247 GCATGTGCTGGATGTATTAAAGGT 59.661 41.667 0.00 0.00 38.21 3.50
6925 8397 2.802816 CCGGAGTTGTCTATAGCAATGC 59.197 50.000 0.00 0.00 0.00 3.56
6940 8412 1.264295 GTTCTAACCACCTCCGGAGT 58.736 55.000 29.25 15.06 0.00 3.85
6982 8454 4.163458 TGGAGAATAACAACCGCCTCTAAT 59.837 41.667 0.00 0.00 0.00 1.73
7003 8475 2.919772 AATTTAAGGAGGGGGTGTGG 57.080 50.000 0.00 0.00 0.00 4.17
7004 8476 4.017126 GAGAAATTTAAGGAGGGGGTGTG 58.983 47.826 0.00 0.00 0.00 3.82
7006 8478 3.279434 CGAGAAATTTAAGGAGGGGGTG 58.721 50.000 0.00 0.00 0.00 4.61
7007 8479 2.917600 ACGAGAAATTTAAGGAGGGGGT 59.082 45.455 0.00 0.00 0.00 4.95
7011 8488 5.468746 TGTGTTGACGAGAAATTTAAGGAGG 59.531 40.000 0.00 0.00 0.00 4.30
7013 8490 6.485313 ACATGTGTTGACGAGAAATTTAAGGA 59.515 34.615 0.00 0.00 0.00 3.36
7033 8510 5.927689 TGTAAAATAGAAACCGACGACATGT 59.072 36.000 0.00 0.00 0.00 3.21
7038 8515 6.038356 GGAGATGTAAAATAGAAACCGACGA 58.962 40.000 0.00 0.00 0.00 4.20
7039 8516 6.040878 AGGAGATGTAAAATAGAAACCGACG 58.959 40.000 0.00 0.00 0.00 5.12
7040 8517 7.676572 GCAAGGAGATGTAAAATAGAAACCGAC 60.677 40.741 0.00 0.00 0.00 4.79
7041 8518 6.315393 GCAAGGAGATGTAAAATAGAAACCGA 59.685 38.462 0.00 0.00 0.00 4.69
7048 8525 5.235186 CCAGACGCAAGGAGATGTAAAATAG 59.765 44.000 0.00 0.00 46.39 1.73
7058 8535 0.827925 ACTGACCAGACGCAAGGAGA 60.828 55.000 3.76 0.00 46.39 3.71
7061 8538 0.951040 GGAACTGACCAGACGCAAGG 60.951 60.000 3.76 0.00 46.39 3.61
7064 8541 1.666011 GAGGAACTGACCAGACGCA 59.334 57.895 3.76 0.00 41.55 5.24
7066 8543 1.213013 CCGAGGAACTGACCAGACG 59.787 63.158 3.76 0.00 41.55 4.18
7069 8546 1.608717 CCCTCCGAGGAACTGACCAG 61.609 65.000 16.69 0.00 41.55 4.00
7073 8550 0.406750 TACACCCTCCGAGGAACTGA 59.593 55.000 16.69 0.00 41.55 3.41
7085 8562 2.903926 AGACTAGCAAGGTTACACCCT 58.096 47.619 0.00 0.00 39.75 4.34
7113 8590 4.169856 TGGGGAAGTGCAAGGGAATTATAT 59.830 41.667 0.00 0.00 0.00 0.86
7115 8592 2.314549 TGGGGAAGTGCAAGGGAATTAT 59.685 45.455 0.00 0.00 0.00 1.28
7116 8593 1.713647 TGGGGAAGTGCAAGGGAATTA 59.286 47.619 0.00 0.00 0.00 1.40
7118 8595 0.712380 ATGGGGAAGTGCAAGGGAAT 59.288 50.000 0.00 0.00 0.00 3.01
7136 8613 1.349688 TGCTAGGTTTGACCGTGGAAT 59.650 47.619 0.00 0.00 44.90 3.01
7145 8622 1.544724 GCCATTGGTGCTAGGTTTGA 58.455 50.000 4.26 0.00 0.00 2.69
7152 8629 1.209504 GTGACTAGGCCATTGGTGCTA 59.790 52.381 5.01 0.00 0.00 3.49
7153 8630 0.035056 GTGACTAGGCCATTGGTGCT 60.035 55.000 5.01 0.00 0.00 4.40
7154 8631 0.322456 TGTGACTAGGCCATTGGTGC 60.322 55.000 5.01 0.00 0.00 5.01
7155 8632 2.019249 CATGTGACTAGGCCATTGGTG 58.981 52.381 5.01 0.00 0.00 4.17
7156 8633 1.635487 ACATGTGACTAGGCCATTGGT 59.365 47.619 5.01 0.00 0.00 3.67
7157 8634 2.292267 GACATGTGACTAGGCCATTGG 58.708 52.381 1.15 0.00 0.00 3.16
7159 8636 1.134401 CGGACATGTGACTAGGCCATT 60.134 52.381 1.15 0.00 0.00 3.16
7161 8638 1.897423 CGGACATGTGACTAGGCCA 59.103 57.895 1.15 0.00 0.00 5.36
7162 8639 1.521681 GCGGACATGTGACTAGGCC 60.522 63.158 1.15 0.00 0.00 5.19
7164 8641 1.144057 GGGCGGACATGTGACTAGG 59.856 63.158 1.15 0.00 0.00 3.02
7166 8643 0.464036 GATGGGCGGACATGTGACTA 59.536 55.000 1.15 0.00 0.00 2.59
7167 8644 1.221840 GATGGGCGGACATGTGACT 59.778 57.895 1.15 0.00 0.00 3.41
7171 8649 0.677731 CAACAGATGGGCGGACATGT 60.678 55.000 0.00 0.00 0.00 3.21
7252 8730 3.577313 GCGAAAGGGCAGATCGGC 61.577 66.667 9.58 9.58 37.08 5.54
7253 8731 2.125147 TGCGAAAGGGCAGATCGG 60.125 61.111 7.07 0.00 38.17 4.18
7259 8737 4.577677 TGCCACTGCGAAAGGGCA 62.578 61.111 3.56 3.56 44.91 5.36
7260 8738 3.273080 CTTGCCACTGCGAAAGGGC 62.273 63.158 0.00 0.00 41.78 5.19
7261 8739 1.455383 AACTTGCCACTGCGAAAGGG 61.455 55.000 0.00 0.00 41.78 3.95
7262 8740 0.318107 CAACTTGCCACTGCGAAAGG 60.318 55.000 0.00 0.00 41.78 3.11
7263 8741 0.318107 CCAACTTGCCACTGCGAAAG 60.318 55.000 0.00 0.00 41.78 2.62
7264 8742 1.732917 CCAACTTGCCACTGCGAAA 59.267 52.632 0.00 0.00 41.78 3.46
7265 8743 2.844451 GCCAACTTGCCACTGCGAA 61.844 57.895 0.00 0.00 41.78 4.70
7266 8744 3.286751 GCCAACTTGCCACTGCGA 61.287 61.111 0.00 0.00 41.78 5.10
7267 8745 3.547249 CTGCCAACTTGCCACTGCG 62.547 63.158 0.00 0.00 41.78 5.18
7268 8746 2.195567 TCTGCCAACTTGCCACTGC 61.196 57.895 0.00 0.00 38.26 4.40
7269 8747 1.656441 GTCTGCCAACTTGCCACTG 59.344 57.895 0.00 0.00 0.00 3.66
7270 8748 1.529244 GGTCTGCCAACTTGCCACT 60.529 57.895 0.00 0.00 34.09 4.00
7271 8749 2.564721 GGGTCTGCCAACTTGCCAC 61.565 63.158 0.00 0.00 36.17 5.01
7272 8750 2.203480 GGGTCTGCCAACTTGCCA 60.203 61.111 0.00 0.00 36.17 4.92
7273 8751 3.365265 CGGGTCTGCCAACTTGCC 61.365 66.667 0.00 0.00 36.17 4.52
7274 8752 4.043200 GCGGGTCTGCCAACTTGC 62.043 66.667 0.00 0.00 36.17 4.01
7275 8753 2.594303 TGCGGGTCTGCCAACTTG 60.594 61.111 0.00 0.00 36.17 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.