Multiple sequence alignment - TraesCS3A01G226800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G226800 chr3A 100.000 2505 0 0 1 2505 424079425 424081929 0.000000e+00 4626
1 TraesCS3A01G226800 chr3D 90.225 1913 90 30 660 2505 305891088 305892970 0.000000e+00 2407
2 TraesCS3A01G226800 chr3D 83.954 349 37 11 7 351 576575362 576575695 1.450000e-82 316
3 TraesCS3A01G226800 chr3D 92.398 171 9 1 422 592 305890700 305890866 8.950000e-60 241
4 TraesCS3A01G226800 chr3B 90.476 1176 56 29 592 1722 415759355 415758191 0.000000e+00 1500
5 TraesCS3A01G226800 chr3B 89.388 245 22 3 352 592 415759777 415759533 3.130000e-79 305
6 TraesCS3A01G226800 chr3B 87.437 199 17 7 1 194 661038181 661037986 3.240000e-54 222
7 TraesCS3A01G226800 chr2A 95.467 353 11 2 1 352 369834365 369834713 2.180000e-155 558
8 TraesCS3A01G226800 chr7D 87.356 348 37 3 7 351 605866385 605866728 2.340000e-105 392
9 TraesCS3A01G226800 chr1D 82.599 431 56 3 2094 2505 47308990 47308560 1.830000e-96 363
10 TraesCS3A01G226800 chr1D 82.812 384 56 9 2042 2419 492442165 492441786 3.990000e-88 335
11 TraesCS3A01G226800 chr1D 82.171 387 55 11 2053 2433 70582568 70582946 1.120000e-83 320
12 TraesCS3A01G226800 chr1B 83.854 384 58 3 2053 2432 67014105 67013722 1.830000e-96 363
13 TraesCS3A01G226800 chr5B 86.462 325 36 6 1 321 511710320 511710640 1.430000e-92 350
14 TraesCS3A01G226800 chr6B 86.154 325 36 6 1 321 678309217 678308898 2.390000e-90 342
15 TraesCS3A01G226800 chr6B 86.164 318 37 5 7 321 690256476 690256163 1.110000e-88 337
16 TraesCS3A01G226800 chr2B 86.435 317 34 7 9 321 780119703 780119392 3.090000e-89 339
17 TraesCS3A01G226800 chr6D 83.471 363 43 12 2086 2433 434475353 434474993 3.110000e-84 322
18 TraesCS3A01G226800 chr6D 83.333 306 35 15 2132 2433 446645404 446645111 4.110000e-68 268
19 TraesCS3A01G226800 chr4B 85.806 310 36 5 15 321 605505791 605505487 3.110000e-84 322
20 TraesCS3A01G226800 chr5D 84.000 300 33 9 1 297 343658338 343658625 8.830000e-70 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G226800 chr3A 424079425 424081929 2504 False 4626.0 4626 100.0000 1 2505 1 chr3A.!!$F1 2504
1 TraesCS3A01G226800 chr3D 305890700 305892970 2270 False 1324.0 2407 91.3115 422 2505 2 chr3D.!!$F2 2083
2 TraesCS3A01G226800 chr3B 415758191 415759777 1586 True 902.5 1500 89.9320 352 1722 2 chr3B.!!$R2 1370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 281 0.02811 GAAATCACGGCCGCAAGATC 59.972 55.0 28.58 15.1 43.02 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2397 0.179045 ATCGCCTACACCAATGGCTC 60.179 55.0 0.0 0.0 44.09 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 8.770828 TCTACTTAAAAAGTCAACCTGAAATCG 58.229 33.333 0.00 0.00 41.77 3.34
39 40 6.206498 ACTTAAAAAGTCAACCTGAAATCGC 58.794 36.000 0.00 0.00 37.02 4.58
40 41 4.647424 AAAAAGTCAACCTGAAATCGCA 57.353 36.364 0.00 0.00 0.00 5.10
41 42 3.626028 AAAGTCAACCTGAAATCGCAC 57.374 42.857 0.00 0.00 0.00 5.34
42 43 2.550830 AGTCAACCTGAAATCGCACT 57.449 45.000 0.00 0.00 0.00 4.40
43 44 3.678056 AGTCAACCTGAAATCGCACTA 57.322 42.857 0.00 0.00 0.00 2.74
44 45 4.002906 AGTCAACCTGAAATCGCACTAA 57.997 40.909 0.00 0.00 0.00 2.24
45 46 4.385825 AGTCAACCTGAAATCGCACTAAA 58.614 39.130 0.00 0.00 0.00 1.85
46 47 4.819630 AGTCAACCTGAAATCGCACTAAAA 59.180 37.500 0.00 0.00 0.00 1.52
47 48 4.909880 GTCAACCTGAAATCGCACTAAAAC 59.090 41.667 0.00 0.00 0.00 2.43
48 49 4.023536 TCAACCTGAAATCGCACTAAAACC 60.024 41.667 0.00 0.00 0.00 3.27
49 50 3.751518 ACCTGAAATCGCACTAAAACCT 58.248 40.909 0.00 0.00 0.00 3.50
50 51 4.142038 ACCTGAAATCGCACTAAAACCTT 58.858 39.130 0.00 0.00 0.00 3.50
51 52 4.215613 ACCTGAAATCGCACTAAAACCTTC 59.784 41.667 0.00 0.00 0.00 3.46
52 53 4.379499 CCTGAAATCGCACTAAAACCTTCC 60.379 45.833 0.00 0.00 0.00 3.46
53 54 4.394729 TGAAATCGCACTAAAACCTTCCT 58.605 39.130 0.00 0.00 0.00 3.36
54 55 5.553123 TGAAATCGCACTAAAACCTTCCTA 58.447 37.500 0.00 0.00 0.00 2.94
55 56 5.642063 TGAAATCGCACTAAAACCTTCCTAG 59.358 40.000 0.00 0.00 0.00 3.02
56 57 5.416271 AATCGCACTAAAACCTTCCTAGA 57.584 39.130 0.00 0.00 0.00 2.43
57 58 4.877378 TCGCACTAAAACCTTCCTAGAA 57.123 40.909 0.00 0.00 0.00 2.10
58 59 5.416271 TCGCACTAAAACCTTCCTAGAAT 57.584 39.130 0.00 0.00 0.00 2.40
59 60 5.175859 TCGCACTAAAACCTTCCTAGAATG 58.824 41.667 0.00 0.00 0.00 2.67
60 61 4.201822 CGCACTAAAACCTTCCTAGAATGC 60.202 45.833 0.00 0.00 0.00 3.56
61 62 4.944317 GCACTAAAACCTTCCTAGAATGCT 59.056 41.667 0.00 0.00 0.00 3.79
62 63 5.065346 GCACTAAAACCTTCCTAGAATGCTC 59.935 44.000 0.00 0.00 0.00 4.26
63 64 6.173339 CACTAAAACCTTCCTAGAATGCTCA 58.827 40.000 0.00 0.00 0.00 4.26
64 65 6.825721 CACTAAAACCTTCCTAGAATGCTCAT 59.174 38.462 0.00 0.00 0.00 2.90
65 66 6.825721 ACTAAAACCTTCCTAGAATGCTCATG 59.174 38.462 0.00 0.00 0.00 3.07
66 67 3.853355 ACCTTCCTAGAATGCTCATGG 57.147 47.619 0.00 0.00 0.00 3.66
67 68 2.441001 ACCTTCCTAGAATGCTCATGGG 59.559 50.000 0.00 0.00 0.00 4.00
68 69 2.707791 CCTTCCTAGAATGCTCATGGGA 59.292 50.000 0.00 0.00 0.00 4.37
69 70 3.330110 CCTTCCTAGAATGCTCATGGGAT 59.670 47.826 0.00 0.00 0.00 3.85
70 71 4.565236 CCTTCCTAGAATGCTCATGGGATC 60.565 50.000 0.00 0.00 0.00 3.36
71 72 3.590714 TCCTAGAATGCTCATGGGATCA 58.409 45.455 0.00 0.00 0.00 2.92
72 73 4.173594 TCCTAGAATGCTCATGGGATCAT 58.826 43.478 0.00 0.00 31.45 2.45
87 88 2.738846 GGATCATGATCCGGAAATCACG 59.261 50.000 33.48 0.42 46.84 4.35
88 89 1.581934 TCATGATCCGGAAATCACGC 58.418 50.000 9.01 0.00 38.43 5.34
89 90 0.588252 CATGATCCGGAAATCACGCC 59.412 55.000 9.01 0.00 38.43 5.68
90 91 0.180171 ATGATCCGGAAATCACGCCA 59.820 50.000 9.01 0.00 38.43 5.69
91 92 0.742990 TGATCCGGAAATCACGCCAC 60.743 55.000 9.01 0.00 30.76 5.01
92 93 1.436983 GATCCGGAAATCACGCCACC 61.437 60.000 9.01 0.00 0.00 4.61
93 94 1.910580 ATCCGGAAATCACGCCACCT 61.911 55.000 9.01 0.00 0.00 4.00
94 95 1.219664 CCGGAAATCACGCCACCTA 59.780 57.895 0.00 0.00 0.00 3.08
95 96 0.179056 CCGGAAATCACGCCACCTAT 60.179 55.000 0.00 0.00 0.00 2.57
96 97 1.663695 CGGAAATCACGCCACCTATT 58.336 50.000 0.00 0.00 0.00 1.73
97 98 2.014128 CGGAAATCACGCCACCTATTT 58.986 47.619 0.00 0.00 0.00 1.40
98 99 2.031683 CGGAAATCACGCCACCTATTTC 59.968 50.000 0.00 0.00 37.52 2.17
99 100 2.357952 GGAAATCACGCCACCTATTTCC 59.642 50.000 9.26 9.26 45.92 3.13
100 101 3.279434 GAAATCACGCCACCTATTTCCT 58.721 45.455 0.00 0.00 33.98 3.36
101 102 3.366052 AATCACGCCACCTATTTCCTT 57.634 42.857 0.00 0.00 0.00 3.36
102 103 2.871096 TCACGCCACCTATTTCCTTT 57.129 45.000 0.00 0.00 0.00 3.11
103 104 2.706890 TCACGCCACCTATTTCCTTTC 58.293 47.619 0.00 0.00 0.00 2.62
104 105 1.743394 CACGCCACCTATTTCCTTTCC 59.257 52.381 0.00 0.00 0.00 3.13
105 106 1.633945 ACGCCACCTATTTCCTTTCCT 59.366 47.619 0.00 0.00 0.00 3.36
106 107 2.841881 ACGCCACCTATTTCCTTTCCTA 59.158 45.455 0.00 0.00 0.00 2.94
107 108 3.203716 CGCCACCTATTTCCTTTCCTAC 58.796 50.000 0.00 0.00 0.00 3.18
108 109 3.118371 CGCCACCTATTTCCTTTCCTACT 60.118 47.826 0.00 0.00 0.00 2.57
109 110 4.100498 CGCCACCTATTTCCTTTCCTACTA 59.900 45.833 0.00 0.00 0.00 1.82
110 111 5.395990 CGCCACCTATTTCCTTTCCTACTAA 60.396 44.000 0.00 0.00 0.00 2.24
111 112 6.602278 GCCACCTATTTCCTTTCCTACTAAT 58.398 40.000 0.00 0.00 0.00 1.73
112 113 7.472381 CGCCACCTATTTCCTTTCCTACTAATA 60.472 40.741 0.00 0.00 0.00 0.98
113 114 8.215736 GCCACCTATTTCCTTTCCTACTAATAA 58.784 37.037 0.00 0.00 0.00 1.40
132 133 8.880750 ACTAATAAAACACTCTAAAATCGAGCC 58.119 33.333 0.00 0.00 31.71 4.70
133 134 6.679327 ATAAAACACTCTAAAATCGAGCCC 57.321 37.500 0.00 0.00 31.71 5.19
134 135 2.693267 ACACTCTAAAATCGAGCCCC 57.307 50.000 0.00 0.00 31.71 5.80
135 136 1.906574 ACACTCTAAAATCGAGCCCCA 59.093 47.619 0.00 0.00 31.71 4.96
136 137 2.304761 ACACTCTAAAATCGAGCCCCAA 59.695 45.455 0.00 0.00 31.71 4.12
137 138 3.244770 ACACTCTAAAATCGAGCCCCAAA 60.245 43.478 0.00 0.00 31.71 3.28
138 139 3.756434 CACTCTAAAATCGAGCCCCAAAA 59.244 43.478 0.00 0.00 31.71 2.44
139 140 4.217550 CACTCTAAAATCGAGCCCCAAAAA 59.782 41.667 0.00 0.00 31.71 1.94
140 141 5.016831 ACTCTAAAATCGAGCCCCAAAAAT 58.983 37.500 0.00 0.00 31.71 1.82
141 142 6.094881 CACTCTAAAATCGAGCCCCAAAAATA 59.905 38.462 0.00 0.00 31.71 1.40
142 143 6.095021 ACTCTAAAATCGAGCCCCAAAAATAC 59.905 38.462 0.00 0.00 31.71 1.89
143 144 6.184789 TCTAAAATCGAGCCCCAAAAATACT 58.815 36.000 0.00 0.00 0.00 2.12
144 145 5.738619 AAAATCGAGCCCCAAAAATACTT 57.261 34.783 0.00 0.00 0.00 2.24
145 146 5.738619 AAATCGAGCCCCAAAAATACTTT 57.261 34.783 0.00 0.00 0.00 2.66
146 147 4.983671 ATCGAGCCCCAAAAATACTTTC 57.016 40.909 0.00 0.00 0.00 2.62
147 148 4.028993 TCGAGCCCCAAAAATACTTTCT 57.971 40.909 0.00 0.00 0.00 2.52
148 149 5.168647 TCGAGCCCCAAAAATACTTTCTA 57.831 39.130 0.00 0.00 0.00 2.10
149 150 5.562635 TCGAGCCCCAAAAATACTTTCTAA 58.437 37.500 0.00 0.00 0.00 2.10
150 151 6.005198 TCGAGCCCCAAAAATACTTTCTAAA 58.995 36.000 0.00 0.00 0.00 1.85
151 152 6.490721 TCGAGCCCCAAAAATACTTTCTAAAA 59.509 34.615 0.00 0.00 0.00 1.52
152 153 7.177744 TCGAGCCCCAAAAATACTTTCTAAAAT 59.822 33.333 0.00 0.00 0.00 1.82
153 154 7.817478 CGAGCCCCAAAAATACTTTCTAAAATT 59.183 33.333 0.00 0.00 0.00 1.82
155 156 9.938280 AGCCCCAAAAATACTTTCTAAAATTAC 57.062 29.630 0.00 0.00 0.00 1.89
156 157 9.938280 GCCCCAAAAATACTTTCTAAAATTACT 57.062 29.630 0.00 0.00 0.00 2.24
161 162 8.683550 AAAATACTTTCTAAAATTACTGCCGC 57.316 30.769 0.00 0.00 0.00 6.53
162 163 6.995511 ATACTTTCTAAAATTACTGCCGCA 57.004 33.333 0.00 0.00 0.00 5.69
163 164 5.699097 ACTTTCTAAAATTACTGCCGCAA 57.301 34.783 0.00 0.00 0.00 4.85
164 165 6.267496 ACTTTCTAAAATTACTGCCGCAAT 57.733 33.333 0.00 0.00 0.00 3.56
165 166 7.385778 ACTTTCTAAAATTACTGCCGCAATA 57.614 32.000 0.00 0.00 0.00 1.90
166 167 7.822658 ACTTTCTAAAATTACTGCCGCAATAA 58.177 30.769 0.00 0.00 0.00 1.40
167 168 7.968405 ACTTTCTAAAATTACTGCCGCAATAAG 59.032 33.333 0.37 0.00 0.00 1.73
168 169 7.618502 TTCTAAAATTACTGCCGCAATAAGA 57.381 32.000 0.37 0.00 0.00 2.10
169 170 7.801716 TCTAAAATTACTGCCGCAATAAGAT 57.198 32.000 0.37 0.00 0.00 2.40
170 171 7.861630 TCTAAAATTACTGCCGCAATAAGATC 58.138 34.615 0.37 0.00 0.00 2.75
171 172 5.438761 AAATTACTGCCGCAATAAGATCC 57.561 39.130 0.37 0.00 0.00 3.36
172 173 2.148916 TACTGCCGCAATAAGATCCG 57.851 50.000 0.00 0.00 0.00 4.18
173 174 0.464036 ACTGCCGCAATAAGATCCGA 59.536 50.000 0.00 0.00 0.00 4.55
174 175 0.861837 CTGCCGCAATAAGATCCGAC 59.138 55.000 0.00 0.00 0.00 4.79
175 176 0.176910 TGCCGCAATAAGATCCGACA 59.823 50.000 0.00 0.00 0.00 4.35
176 177 1.295792 GCCGCAATAAGATCCGACAA 58.704 50.000 0.00 0.00 0.00 3.18
177 178 1.873591 GCCGCAATAAGATCCGACAAT 59.126 47.619 0.00 0.00 0.00 2.71
178 179 2.290641 GCCGCAATAAGATCCGACAATT 59.709 45.455 0.00 0.00 0.00 2.32
179 180 3.496884 GCCGCAATAAGATCCGACAATTA 59.503 43.478 0.00 0.00 0.00 1.40
180 181 4.154195 GCCGCAATAAGATCCGACAATTAT 59.846 41.667 0.00 0.00 0.00 1.28
181 182 5.621422 CCGCAATAAGATCCGACAATTATG 58.379 41.667 0.00 0.00 0.00 1.90
182 183 5.179368 CCGCAATAAGATCCGACAATTATGT 59.821 40.000 0.00 0.00 44.25 2.29
195 196 5.990745 ACAATTATGTCAAACAAATCGCG 57.009 34.783 0.00 0.00 33.41 5.87
196 197 4.323336 ACAATTATGTCAAACAAATCGCGC 59.677 37.500 0.00 0.00 33.41 6.86
197 198 2.535934 TATGTCAAACAAATCGCGCC 57.464 45.000 0.00 0.00 0.00 6.53
198 199 0.595588 ATGTCAAACAAATCGCGCCA 59.404 45.000 0.00 0.00 0.00 5.69
199 200 0.040514 TGTCAAACAAATCGCGCCAG 60.041 50.000 0.00 0.00 0.00 4.85
200 201 0.237235 GTCAAACAAATCGCGCCAGA 59.763 50.000 0.00 0.00 0.00 3.86
201 202 0.516877 TCAAACAAATCGCGCCAGAG 59.483 50.000 0.00 0.00 0.00 3.35
202 203 0.516877 CAAACAAATCGCGCCAGAGA 59.483 50.000 0.00 0.00 0.00 3.10
203 204 1.131126 CAAACAAATCGCGCCAGAGAT 59.869 47.619 0.00 0.00 38.56 2.75
204 205 1.009829 AACAAATCGCGCCAGAGATC 58.990 50.000 0.00 0.00 35.84 2.75
205 206 1.148157 ACAAATCGCGCCAGAGATCG 61.148 55.000 0.00 0.00 35.84 3.69
206 207 1.141881 AAATCGCGCCAGAGATCGT 59.858 52.632 0.00 0.00 35.84 3.73
207 208 1.148157 AAATCGCGCCAGAGATCGTG 61.148 55.000 0.00 0.00 35.84 4.35
208 209 2.004808 AATCGCGCCAGAGATCGTGA 62.005 55.000 0.00 0.44 46.92 4.35
209 210 1.800283 ATCGCGCCAGAGATCGTGAT 61.800 55.000 0.00 5.06 46.61 3.06
210 211 2.013483 CGCGCCAGAGATCGTGATC 61.013 63.158 0.00 1.52 38.34 2.92
211 212 2.013483 GCGCCAGAGATCGTGATCG 61.013 63.158 0.00 4.66 42.48 3.69
224 225 2.855963 TCGTGATCGAGAAAAATACGCC 59.144 45.455 0.00 0.00 41.35 5.68
225 226 2.034001 CGTGATCGAGAAAAATACGCCC 60.034 50.000 0.00 0.00 39.71 6.13
226 227 2.034001 GTGATCGAGAAAAATACGCCCG 60.034 50.000 0.00 0.00 0.00 6.13
227 228 0.935196 ATCGAGAAAAATACGCCCGC 59.065 50.000 0.00 0.00 0.00 6.13
228 229 0.390078 TCGAGAAAAATACGCCCGCA 60.390 50.000 0.00 0.00 0.00 5.69
229 230 0.247537 CGAGAAAAATACGCCCGCAC 60.248 55.000 0.00 0.00 0.00 5.34
230 231 0.247537 GAGAAAAATACGCCCGCACG 60.248 55.000 0.00 0.00 39.50 5.34
231 232 0.671163 AGAAAAATACGCCCGCACGA 60.671 50.000 2.15 0.00 36.70 4.35
232 233 0.375803 GAAAAATACGCCCGCACGAT 59.624 50.000 2.15 0.00 36.70 3.73
233 234 0.375803 AAAAATACGCCCGCACGATC 59.624 50.000 2.15 0.00 36.70 3.69
234 235 0.741574 AAAATACGCCCGCACGATCA 60.742 50.000 2.15 0.00 36.70 2.92
235 236 0.741574 AAATACGCCCGCACGATCAA 60.742 50.000 2.15 0.00 36.70 2.57
236 237 0.531974 AATACGCCCGCACGATCAAT 60.532 50.000 2.15 0.00 36.70 2.57
237 238 0.944311 ATACGCCCGCACGATCAATC 60.944 55.000 2.15 0.00 36.70 2.67
238 239 2.964438 TACGCCCGCACGATCAATCC 62.964 60.000 2.15 0.00 36.70 3.01
239 240 3.640000 GCCCGCACGATCAATCCG 61.640 66.667 0.00 0.00 0.00 4.18
240 241 2.967076 CCCGCACGATCAATCCGG 60.967 66.667 0.00 0.00 38.71 5.14
241 242 2.202878 CCGCACGATCAATCCGGT 60.203 61.111 0.00 0.00 34.56 5.28
242 243 2.237751 CCGCACGATCAATCCGGTC 61.238 63.158 0.00 0.00 34.56 4.79
243 244 2.237751 CGCACGATCAATCCGGTCC 61.238 63.158 0.00 0.00 0.00 4.46
244 245 1.153449 GCACGATCAATCCGGTCCA 60.153 57.895 0.00 0.00 0.00 4.02
245 246 0.742990 GCACGATCAATCCGGTCCAA 60.743 55.000 0.00 0.00 0.00 3.53
246 247 1.732941 CACGATCAATCCGGTCCAAA 58.267 50.000 0.00 0.00 0.00 3.28
247 248 2.080693 CACGATCAATCCGGTCCAAAA 58.919 47.619 0.00 0.00 0.00 2.44
248 249 2.486203 CACGATCAATCCGGTCCAAAAA 59.514 45.455 0.00 0.00 0.00 1.94
270 271 3.726291 AAAAACACCCTGAAATCACGG 57.274 42.857 0.00 0.00 0.00 4.94
271 272 0.958822 AAACACCCTGAAATCACGGC 59.041 50.000 0.00 0.00 0.00 5.68
272 273 0.893727 AACACCCTGAAATCACGGCC 60.894 55.000 0.00 0.00 0.00 6.13
273 274 2.046314 ACCCTGAAATCACGGCCG 60.046 61.111 26.86 26.86 0.00 6.13
274 275 3.508840 CCCTGAAATCACGGCCGC 61.509 66.667 28.58 8.37 0.00 6.53
275 276 2.745884 CCTGAAATCACGGCCGCA 60.746 61.111 28.58 13.44 0.00 5.69
276 277 2.331893 CCTGAAATCACGGCCGCAA 61.332 57.895 28.58 14.75 0.00 4.85
277 278 1.135315 CTGAAATCACGGCCGCAAG 59.865 57.895 28.58 16.28 0.00 4.01
278 279 1.298157 CTGAAATCACGGCCGCAAGA 61.298 55.000 28.58 21.49 43.02 3.02
279 280 0.676466 TGAAATCACGGCCGCAAGAT 60.676 50.000 28.58 22.82 43.02 2.40
280 281 0.028110 GAAATCACGGCCGCAAGATC 59.972 55.000 28.58 15.10 43.02 2.75
281 282 0.392998 AAATCACGGCCGCAAGATCT 60.393 50.000 28.58 10.62 43.02 2.75
282 283 1.091771 AATCACGGCCGCAAGATCTG 61.092 55.000 28.58 14.71 43.02 2.90
283 284 1.960040 ATCACGGCCGCAAGATCTGA 61.960 55.000 28.58 20.08 43.02 3.27
284 285 1.741401 CACGGCCGCAAGATCTGAA 60.741 57.895 28.58 0.00 43.02 3.02
285 286 1.003839 ACGGCCGCAAGATCTGAAA 60.004 52.632 28.58 0.00 43.02 2.69
286 287 1.298859 ACGGCCGCAAGATCTGAAAC 61.299 55.000 28.58 0.00 43.02 2.78
287 288 1.425428 GGCCGCAAGATCTGAAACG 59.575 57.895 0.00 0.00 43.02 3.60
288 289 1.019278 GGCCGCAAGATCTGAAACGA 61.019 55.000 0.00 0.00 43.02 3.85
289 290 0.796312 GCCGCAAGATCTGAAACGAA 59.204 50.000 0.00 0.00 43.02 3.85
290 291 1.464189 GCCGCAAGATCTGAAACGAAC 60.464 52.381 0.00 0.00 43.02 3.95
291 292 1.201812 CCGCAAGATCTGAAACGAACG 60.202 52.381 0.00 0.00 43.02 3.95
292 293 1.719246 CGCAAGATCTGAAACGAACGA 59.281 47.619 0.00 0.00 43.02 3.85
293 294 2.470781 CGCAAGATCTGAAACGAACGAC 60.471 50.000 0.00 0.00 43.02 4.34
294 295 2.475111 GCAAGATCTGAAACGAACGACA 59.525 45.455 0.00 0.00 0.00 4.35
295 296 3.123621 GCAAGATCTGAAACGAACGACAT 59.876 43.478 0.00 0.00 0.00 3.06
296 297 4.722346 GCAAGATCTGAAACGAACGACATC 60.722 45.833 0.00 0.00 0.00 3.06
297 298 3.512680 AGATCTGAAACGAACGACATCC 58.487 45.455 0.00 0.00 0.00 3.51
298 299 1.693467 TCTGAAACGAACGACATCCG 58.307 50.000 0.14 0.00 45.44 4.18
299 300 1.267533 TCTGAAACGAACGACATCCGA 59.732 47.619 0.14 0.00 41.76 4.55
300 301 1.385743 CTGAAACGAACGACATCCGAC 59.614 52.381 0.14 0.00 41.76 4.79
301 302 0.361184 GAAACGAACGACATCCGACG 59.639 55.000 0.14 0.00 41.76 5.12
302 303 2.949106 ACGAACGACATCCGACGT 59.051 55.556 0.14 0.00 45.28 4.34
303 304 1.000233 AACGAACGACATCCGACGTG 61.000 55.000 0.00 0.00 46.10 4.49
304 305 1.441515 CGAACGACATCCGACGTGT 60.442 57.895 0.00 0.00 42.60 4.49
305 306 1.661948 CGAACGACATCCGACGTGTG 61.662 60.000 0.00 0.00 42.60 3.82
306 307 0.662374 GAACGACATCCGACGTGTGT 60.662 55.000 0.00 2.47 42.60 3.72
307 308 0.937699 AACGACATCCGACGTGTGTG 60.938 55.000 0.00 0.00 42.60 3.82
308 309 2.086426 CGACATCCGACGTGTGTGG 61.086 63.158 0.00 2.96 41.76 4.17
309 310 1.287815 GACATCCGACGTGTGTGGA 59.712 57.895 0.00 0.00 35.96 4.02
310 311 0.108804 GACATCCGACGTGTGTGGAT 60.109 55.000 0.00 0.00 43.19 3.41
311 312 0.108804 ACATCCGACGTGTGTGGATC 60.109 55.000 0.00 0.00 40.49 3.36
312 313 0.173481 CATCCGACGTGTGTGGATCT 59.827 55.000 0.00 0.00 40.49 2.75
313 314 0.173481 ATCCGACGTGTGTGGATCTG 59.827 55.000 0.00 0.00 38.04 2.90
314 315 1.176619 TCCGACGTGTGTGGATCTGT 61.177 55.000 0.00 0.00 0.00 3.41
315 316 0.319555 CCGACGTGTGTGGATCTGTT 60.320 55.000 0.00 0.00 0.00 3.16
316 317 0.784178 CGACGTGTGTGGATCTGTTG 59.216 55.000 0.00 0.00 0.00 3.33
317 318 0.512952 GACGTGTGTGGATCTGTTGC 59.487 55.000 0.00 0.00 0.00 4.17
318 319 0.179059 ACGTGTGTGGATCTGTTGCA 60.179 50.000 0.00 0.00 0.00 4.08
319 320 0.943673 CGTGTGTGGATCTGTTGCAA 59.056 50.000 0.00 0.00 0.00 4.08
320 321 1.333308 CGTGTGTGGATCTGTTGCAAA 59.667 47.619 0.00 0.00 0.00 3.68
321 322 2.223456 CGTGTGTGGATCTGTTGCAAAA 60.223 45.455 0.00 0.00 0.00 2.44
322 323 3.550639 CGTGTGTGGATCTGTTGCAAAAT 60.551 43.478 0.00 0.00 0.00 1.82
323 324 4.370917 GTGTGTGGATCTGTTGCAAAATT 58.629 39.130 0.00 0.00 0.00 1.82
324 325 5.527951 GTGTGTGGATCTGTTGCAAAATTA 58.472 37.500 0.00 0.00 0.00 1.40
325 326 5.402270 GTGTGTGGATCTGTTGCAAAATTAC 59.598 40.000 0.00 0.00 0.00 1.89
326 327 5.301551 TGTGTGGATCTGTTGCAAAATTACT 59.698 36.000 0.00 0.00 0.00 2.24
327 328 5.630680 GTGTGGATCTGTTGCAAAATTACTG 59.369 40.000 0.00 0.00 0.00 2.74
328 329 4.622740 GTGGATCTGTTGCAAAATTACTGC 59.377 41.667 0.00 5.66 40.35 4.40
329 330 4.176271 GGATCTGTTGCAAAATTACTGCC 58.824 43.478 0.00 0.00 39.13 4.85
330 331 3.281341 TCTGTTGCAAAATTACTGCCG 57.719 42.857 0.00 0.00 39.13 5.69
331 332 2.621055 TCTGTTGCAAAATTACTGCCGT 59.379 40.909 0.00 0.00 39.13 5.68
332 333 2.979813 CTGTTGCAAAATTACTGCCGTC 59.020 45.455 0.00 2.46 39.13 4.79
333 334 2.621055 TGTTGCAAAATTACTGCCGTCT 59.379 40.909 0.00 0.00 39.13 4.18
334 335 2.979813 GTTGCAAAATTACTGCCGTCTG 59.020 45.455 0.00 0.00 39.13 3.51
335 336 1.539388 TGCAAAATTACTGCCGTCTGG 59.461 47.619 9.33 0.00 39.13 3.86
336 337 1.539827 GCAAAATTACTGCCGTCTGGT 59.460 47.619 1.77 0.00 37.67 4.00
337 338 2.745281 GCAAAATTACTGCCGTCTGGTA 59.255 45.455 1.77 0.00 37.67 3.25
338 339 3.189702 GCAAAATTACTGCCGTCTGGTAA 59.810 43.478 1.77 0.00 37.67 2.85
339 340 4.320641 GCAAAATTACTGCCGTCTGGTAAA 60.321 41.667 1.77 0.00 37.67 2.01
340 341 5.621329 GCAAAATTACTGCCGTCTGGTAAAT 60.621 40.000 1.77 0.00 37.67 1.40
341 342 6.403855 GCAAAATTACTGCCGTCTGGTAAATA 60.404 38.462 1.77 0.00 37.67 1.40
342 343 6.920569 AAATTACTGCCGTCTGGTAAATAG 57.079 37.500 0.00 0.00 37.67 1.73
343 344 2.311124 ACTGCCGTCTGGTAAATAGC 57.689 50.000 0.00 0.00 37.67 2.97
344 345 1.831736 ACTGCCGTCTGGTAAATAGCT 59.168 47.619 0.00 0.00 37.67 3.32
345 346 2.236395 ACTGCCGTCTGGTAAATAGCTT 59.764 45.455 0.00 0.00 37.67 3.74
346 347 3.270877 CTGCCGTCTGGTAAATAGCTTT 58.729 45.455 0.00 0.00 37.67 3.51
347 348 3.681593 TGCCGTCTGGTAAATAGCTTTT 58.318 40.909 0.00 0.00 37.67 2.27
348 349 3.687698 TGCCGTCTGGTAAATAGCTTTTC 59.312 43.478 0.00 0.00 37.67 2.29
349 350 3.064958 GCCGTCTGGTAAATAGCTTTTCC 59.935 47.826 0.00 0.00 37.67 3.13
350 351 3.308866 CCGTCTGGTAAATAGCTTTTCCG 59.691 47.826 0.00 0.00 35.23 4.30
356 357 9.269453 GTCTGGTAAATAGCTTTTCCGTTATAT 57.731 33.333 0.00 0.00 35.23 0.86
357 358 9.841295 TCTGGTAAATAGCTTTTCCGTTATATT 57.159 29.630 0.00 0.00 35.23 1.28
408 411 6.108015 ACATTGAGTGCAAGTTCATGTTTTT 58.892 32.000 0.00 0.00 37.45 1.94
508 511 5.158494 CGTTTAAATTGACAAAGCCCTACC 58.842 41.667 0.00 0.00 0.00 3.18
533 536 4.272489 TCCATCAGCCCAATCAAAGTAAG 58.728 43.478 0.00 0.00 0.00 2.34
600 783 0.173029 TCGGCGCTTTATTACACCGA 59.827 50.000 7.64 0.00 46.57 4.69
608 791 5.062558 GCGCTTTATTACACCGACTTCTTTA 59.937 40.000 0.00 0.00 0.00 1.85
641 824 5.394224 TTTTTCTTGGAACGGTTCTGTTT 57.606 34.783 19.40 0.00 30.75 2.83
645 828 2.623878 TGGAACGGTTCTGTTTAGCA 57.376 45.000 19.40 5.39 30.75 3.49
795 994 1.002366 CGAACCAGAGCGAATTCAGG 58.998 55.000 6.22 1.71 0.00 3.86
809 1008 0.616395 TTCAGGATCTACACGGGCCA 60.616 55.000 4.39 0.00 0.00 5.36
829 1028 2.334946 CCCACGAGTGTTGGCATGG 61.335 63.158 2.36 0.00 0.00 3.66
830 1029 1.600636 CCACGAGTGTTGGCATGGT 60.601 57.895 2.36 0.00 0.00 3.55
854 1070 2.444140 AGGGCGCCGAATAGGAGT 60.444 61.111 22.54 0.00 45.00 3.85
1038 1259 3.607299 TCCTTCCTCCCGACCCCA 61.607 66.667 0.00 0.00 0.00 4.96
1103 1324 2.226149 CTCGTCCCCTCCCAGGTACT 62.226 65.000 0.00 0.00 43.88 2.73
1154 1375 1.213926 GCTCTGAATTGGGGGAGACAT 59.786 52.381 0.00 0.00 0.00 3.06
1159 1380 3.430453 TGAATTGGGGGAGACATTTGTC 58.570 45.455 2.41 2.41 45.08 3.18
1240 1461 1.522580 GCTGCACCCGGAGATCTTC 60.523 63.158 0.73 0.00 30.74 2.87
1249 1470 1.360911 GGAGATCTTCGAGGACGCC 59.639 63.158 0.00 1.94 39.58 5.68
1507 1728 0.036388 ACGAGACCCGCAAATGATGT 60.036 50.000 0.00 0.00 43.32 3.06
1508 1729 0.374758 CGAGACCCGCAAATGATGTG 59.625 55.000 0.00 0.00 39.33 3.21
1551 1772 1.074752 CTTCCTGCTGCGTTTCTCTC 58.925 55.000 0.00 0.00 0.00 3.20
1553 1774 1.373497 CCTGCTGCGTTTCTCTCGT 60.373 57.895 0.00 0.00 0.00 4.18
1599 1820 0.598065 AGTTTGCGTGGCTTGATTCC 59.402 50.000 0.00 0.00 0.00 3.01
1610 1831 1.065126 GCTTGATTCCCCAGCTGTACT 60.065 52.381 13.81 0.00 0.00 2.73
1704 1931 4.043073 GCAACGACTCTAGCAATACTACC 58.957 47.826 0.00 0.00 0.00 3.18
1728 1955 3.069016 TCCAGTATGTGTCAACGTTGAGT 59.931 43.478 30.38 18.26 37.98 3.41
1796 2023 3.485463 TTTCCTAGACCACCACAAGTG 57.515 47.619 0.00 0.00 46.83 3.16
1797 2024 2.097110 TCCTAGACCACCACAAGTGT 57.903 50.000 0.00 0.00 45.74 3.55
1800 2027 4.164981 TCCTAGACCACCACAAGTGTATT 58.835 43.478 0.00 0.00 45.74 1.89
1802 2029 5.962031 TCCTAGACCACCACAAGTGTATTAT 59.038 40.000 0.00 0.00 45.74 1.28
1803 2030 6.097839 TCCTAGACCACCACAAGTGTATTATC 59.902 42.308 0.00 0.00 45.74 1.75
1804 2031 6.098409 CCTAGACCACCACAAGTGTATTATCT 59.902 42.308 0.00 0.00 45.74 1.98
1806 2033 6.407202 AGACCACCACAAGTGTATTATCTTC 58.593 40.000 0.00 0.00 45.74 2.87
1807 2034 6.013725 AGACCACCACAAGTGTATTATCTTCA 60.014 38.462 0.00 0.00 45.74 3.02
1808 2035 6.721318 ACCACCACAAGTGTATTATCTTCAT 58.279 36.000 0.00 0.00 45.74 2.57
1809 2036 7.857456 ACCACCACAAGTGTATTATCTTCATA 58.143 34.615 0.00 0.00 45.74 2.15
1810 2037 8.325787 ACCACCACAAGTGTATTATCTTCATAA 58.674 33.333 0.00 0.00 45.74 1.90
1811 2038 9.173021 CCACCACAAGTGTATTATCTTCATAAA 57.827 33.333 0.00 0.00 45.74 1.40
1898 2126 8.876275 TTCAATTTTATTATTCATGCCAGAGC 57.124 30.769 0.00 0.00 40.48 4.09
1925 2153 4.568760 TGGGCAAGTTTCGTTTTGAATTTC 59.431 37.500 0.00 0.00 36.22 2.17
1948 2176 3.366052 TTCTGAAATTACCCTGGAGGC 57.634 47.619 0.00 0.00 40.58 4.70
1949 2177 1.564348 TCTGAAATTACCCTGGAGGCC 59.436 52.381 0.00 0.00 40.58 5.19
1950 2178 1.284785 CTGAAATTACCCTGGAGGCCA 59.715 52.381 5.01 0.00 40.58 5.36
1960 2206 2.935348 TGGAGGCCAGAGCATATGT 58.065 52.632 5.01 0.00 42.56 2.29
1979 2225 7.922278 GCATATGTAAATGACACCATGAACATT 59.078 33.333 4.29 0.00 42.17 2.71
2038 2284 6.998968 AATTCCTTCTACTCTGCTTTGATG 57.001 37.500 0.00 0.00 0.00 3.07
2078 2324 3.259064 CGTGGGATGTACTTAACAGGTG 58.741 50.000 0.00 0.00 42.70 4.00
2085 2331 5.007724 GGATGTACTTAACAGGTGCATTAGC 59.992 44.000 0.00 0.00 42.70 3.09
2109 2355 7.732593 AGCCTAGACTTTAGATCACCTAATCAT 59.267 37.037 0.00 0.00 37.22 2.45
2119 2365 7.798596 AGATCACCTAATCATGATGAACAAC 57.201 36.000 9.46 0.00 35.67 3.32
2133 2379 5.817296 TGATGAACAACGAGATGGAATAAGG 59.183 40.000 0.00 0.00 0.00 2.69
2151 2397 3.721087 AGGTCTTACCACCAATGAAGG 57.279 47.619 0.00 0.00 41.95 3.46
2179 2425 1.204941 GGTGTAGGCGATGTGAAGTCT 59.795 52.381 0.00 0.00 0.00 3.24
2181 2427 1.132453 TGTAGGCGATGTGAAGTCTCG 59.868 52.381 0.00 0.00 35.57 4.04
2214 2460 0.176680 CAGGCTCGGTGTAGATGCTT 59.823 55.000 0.00 0.00 0.00 3.91
2215 2461 0.176680 AGGCTCGGTGTAGATGCTTG 59.823 55.000 0.00 0.00 0.00 4.01
2245 2491 3.161450 GCATCCCTCCGGGTGCTA 61.161 66.667 7.15 0.00 44.74 3.49
2278 2524 1.365633 GCATCGGAGCAGAGGTAGG 59.634 63.158 0.00 0.00 0.00 3.18
2290 2536 3.028130 CAGAGGTAGGAGAAGGTCTTCC 58.972 54.545 7.06 0.00 40.33 3.46
2292 2538 4.079672 CAGAGGTAGGAGAAGGTCTTCCTA 60.080 50.000 7.06 1.44 44.35 2.94
2293 2539 4.735020 AGAGGTAGGAGAAGGTCTTCCTAT 59.265 45.833 7.06 0.00 44.35 2.57
2294 2540 5.069518 AGGTAGGAGAAGGTCTTCCTATC 57.930 47.826 7.06 3.48 44.35 2.08
2295 2541 4.482772 AGGTAGGAGAAGGTCTTCCTATCA 59.517 45.833 12.06 0.00 44.35 2.15
2296 2542 4.585581 GGTAGGAGAAGGTCTTCCTATCAC 59.414 50.000 7.06 0.00 44.35 3.06
2297 2543 4.338795 AGGAGAAGGTCTTCCTATCACA 57.661 45.455 7.06 0.00 44.35 3.58
2298 2544 4.027437 AGGAGAAGGTCTTCCTATCACAC 58.973 47.826 7.06 0.00 44.35 3.82
2299 2545 3.769844 GGAGAAGGTCTTCCTATCACACA 59.230 47.826 7.06 0.00 44.35 3.72
2300 2546 4.223032 GGAGAAGGTCTTCCTATCACACAA 59.777 45.833 7.06 0.00 44.35 3.33
2329 2575 5.291905 CCTAGATCGGATTAGGGTTTTGT 57.708 43.478 13.83 0.00 34.13 2.83
2355 2601 1.019805 GGAGGGCAAAGTAGACGCAC 61.020 60.000 0.00 0.00 0.00 5.34
2363 2609 1.767289 AAGTAGACGCACGTGAACAG 58.233 50.000 22.23 9.42 0.00 3.16
2379 2625 1.080501 CAGGTCAGATCGTGCGTGT 60.081 57.895 0.00 0.00 0.00 4.49
2380 2626 1.073216 CAGGTCAGATCGTGCGTGTC 61.073 60.000 0.00 0.00 0.00 3.67
2381 2627 1.080772 GGTCAGATCGTGCGTGTCA 60.081 57.895 0.00 0.00 0.00 3.58
2384 2630 0.243636 TCAGATCGTGCGTGTCATGT 59.756 50.000 0.00 0.00 33.44 3.21
2408 2654 1.523758 CCCCTCTTTATATGTGGCGC 58.476 55.000 0.00 0.00 0.00 6.53
2410 2656 2.301870 CCCCTCTTTATATGTGGCGCTA 59.698 50.000 7.64 0.00 0.00 4.26
2420 2666 1.006805 GTGGCGCTAGCGATCAGAT 60.007 57.895 39.52 0.00 46.35 2.90
2454 2716 2.773487 CCGATCAGGGTGTGTTTGTTA 58.227 47.619 0.00 0.00 35.97 2.41
2474 2736 0.668401 GTGTCAAGGGGGTACGAACG 60.668 60.000 0.00 0.00 0.00 3.95
2482 2744 0.600782 GGGGTACGAACGTTGCTTCA 60.601 55.000 5.00 0.00 0.00 3.02
2492 2754 2.851195 ACGTTGCTTCATGACCTTCTT 58.149 42.857 0.00 0.00 0.00 2.52
2500 2762 4.396478 GCTTCATGACCTTCTTCCCTTAAC 59.604 45.833 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.770828 CGATTTCAGGTTGACTTTTTAAGTAGA 58.229 33.333 0.00 0.00 43.03 2.59
13 14 7.534239 GCGATTTCAGGTTGACTTTTTAAGTAG 59.466 37.037 0.00 0.00 43.03 2.57
14 15 7.012515 TGCGATTTCAGGTTGACTTTTTAAGTA 59.987 33.333 0.00 0.00 43.03 2.24
15 16 6.183360 TGCGATTTCAGGTTGACTTTTTAAGT 60.183 34.615 0.00 0.00 46.38 2.24
16 17 6.142320 GTGCGATTTCAGGTTGACTTTTTAAG 59.858 38.462 0.00 0.00 0.00 1.85
17 18 5.974751 GTGCGATTTCAGGTTGACTTTTTAA 59.025 36.000 0.00 0.00 0.00 1.52
18 19 5.298276 AGTGCGATTTCAGGTTGACTTTTTA 59.702 36.000 0.00 0.00 0.00 1.52
19 20 4.097892 AGTGCGATTTCAGGTTGACTTTTT 59.902 37.500 0.00 0.00 0.00 1.94
20 21 3.632145 AGTGCGATTTCAGGTTGACTTTT 59.368 39.130 0.00 0.00 0.00 2.27
21 22 3.214328 AGTGCGATTTCAGGTTGACTTT 58.786 40.909 0.00 0.00 0.00 2.66
22 23 2.851195 AGTGCGATTTCAGGTTGACTT 58.149 42.857 0.00 0.00 0.00 3.01
23 24 2.550830 AGTGCGATTTCAGGTTGACT 57.449 45.000 0.00 0.00 0.00 3.41
24 25 4.742438 TTTAGTGCGATTTCAGGTTGAC 57.258 40.909 0.00 0.00 0.00 3.18
25 26 4.023536 GGTTTTAGTGCGATTTCAGGTTGA 60.024 41.667 0.00 0.00 0.00 3.18
26 27 4.023193 AGGTTTTAGTGCGATTTCAGGTTG 60.023 41.667 0.00 0.00 0.00 3.77
27 28 4.142038 AGGTTTTAGTGCGATTTCAGGTT 58.858 39.130 0.00 0.00 0.00 3.50
28 29 3.751518 AGGTTTTAGTGCGATTTCAGGT 58.248 40.909 0.00 0.00 0.00 4.00
29 30 4.379499 GGAAGGTTTTAGTGCGATTTCAGG 60.379 45.833 0.00 0.00 0.00 3.86
30 31 4.455877 AGGAAGGTTTTAGTGCGATTTCAG 59.544 41.667 0.00 0.00 0.00 3.02
31 32 4.394729 AGGAAGGTTTTAGTGCGATTTCA 58.605 39.130 0.00 0.00 0.00 2.69
32 33 5.873164 TCTAGGAAGGTTTTAGTGCGATTTC 59.127 40.000 0.00 0.00 0.00 2.17
33 34 5.801380 TCTAGGAAGGTTTTAGTGCGATTT 58.199 37.500 0.00 0.00 0.00 2.17
34 35 5.416271 TCTAGGAAGGTTTTAGTGCGATT 57.584 39.130 0.00 0.00 0.00 3.34
35 36 5.416271 TTCTAGGAAGGTTTTAGTGCGAT 57.584 39.130 0.00 0.00 0.00 4.58
36 37 4.877378 TTCTAGGAAGGTTTTAGTGCGA 57.123 40.909 0.00 0.00 0.00 5.10
37 38 4.201822 GCATTCTAGGAAGGTTTTAGTGCG 60.202 45.833 0.00 0.00 0.00 5.34
38 39 4.944317 AGCATTCTAGGAAGGTTTTAGTGC 59.056 41.667 0.00 0.00 0.00 4.40
39 40 6.173339 TGAGCATTCTAGGAAGGTTTTAGTG 58.827 40.000 0.00 0.00 0.00 2.74
40 41 6.374417 TGAGCATTCTAGGAAGGTTTTAGT 57.626 37.500 0.00 0.00 0.00 2.24
41 42 6.261826 CCATGAGCATTCTAGGAAGGTTTTAG 59.738 42.308 0.00 0.00 0.00 1.85
42 43 6.122277 CCATGAGCATTCTAGGAAGGTTTTA 58.878 40.000 0.00 0.00 0.00 1.52
43 44 4.952335 CCATGAGCATTCTAGGAAGGTTTT 59.048 41.667 0.00 0.00 0.00 2.43
44 45 4.530875 CCATGAGCATTCTAGGAAGGTTT 58.469 43.478 0.00 0.00 0.00 3.27
45 46 3.117738 CCCATGAGCATTCTAGGAAGGTT 60.118 47.826 0.00 0.00 0.00 3.50
46 47 2.441001 CCCATGAGCATTCTAGGAAGGT 59.559 50.000 0.00 0.00 0.00 3.50
47 48 2.707791 TCCCATGAGCATTCTAGGAAGG 59.292 50.000 0.00 0.00 0.00 3.46
48 49 4.041321 TGATCCCATGAGCATTCTAGGAAG 59.959 45.833 0.00 0.00 30.48 3.46
49 50 3.975982 TGATCCCATGAGCATTCTAGGAA 59.024 43.478 0.00 0.00 30.48 3.36
50 51 3.590714 TGATCCCATGAGCATTCTAGGA 58.409 45.455 0.00 0.00 30.48 2.94
51 52 4.571369 ATGATCCCATGAGCATTCTAGG 57.429 45.455 0.00 0.00 44.97 3.02
67 68 2.158449 GCGTGATTTCCGGATCATGATC 59.842 50.000 25.01 24.90 42.86 2.92
68 69 2.146342 GCGTGATTTCCGGATCATGAT 58.854 47.619 25.01 8.25 42.86 2.45
69 70 1.581934 GCGTGATTTCCGGATCATGA 58.418 50.000 25.01 0.00 42.86 3.07
70 71 0.588252 GGCGTGATTTCCGGATCATG 59.412 55.000 18.98 18.98 43.01 3.07
71 72 0.180171 TGGCGTGATTTCCGGATCAT 59.820 50.000 4.15 0.00 38.25 2.45
72 73 0.742990 GTGGCGTGATTTCCGGATCA 60.743 55.000 4.15 3.79 33.81 2.92
73 74 1.436983 GGTGGCGTGATTTCCGGATC 61.437 60.000 4.15 0.29 0.00 3.36
74 75 1.451387 GGTGGCGTGATTTCCGGAT 60.451 57.895 4.15 0.00 0.00 4.18
75 76 1.259142 TAGGTGGCGTGATTTCCGGA 61.259 55.000 0.00 0.00 0.00 5.14
76 77 0.179056 ATAGGTGGCGTGATTTCCGG 60.179 55.000 0.00 0.00 0.00 5.14
77 78 1.663695 AATAGGTGGCGTGATTTCCG 58.336 50.000 0.00 0.00 0.00 4.30
78 79 2.357952 GGAAATAGGTGGCGTGATTTCC 59.642 50.000 13.68 13.68 46.00 3.13
79 80 3.279434 AGGAAATAGGTGGCGTGATTTC 58.721 45.455 0.00 0.00 37.50 2.17
80 81 3.366052 AGGAAATAGGTGGCGTGATTT 57.634 42.857 0.00 0.00 0.00 2.17
81 82 3.366052 AAGGAAATAGGTGGCGTGATT 57.634 42.857 0.00 0.00 0.00 2.57
82 83 3.279434 GAAAGGAAATAGGTGGCGTGAT 58.721 45.455 0.00 0.00 0.00 3.06
83 84 2.617021 GGAAAGGAAATAGGTGGCGTGA 60.617 50.000 0.00 0.00 0.00 4.35
84 85 1.743394 GGAAAGGAAATAGGTGGCGTG 59.257 52.381 0.00 0.00 0.00 5.34
85 86 1.633945 AGGAAAGGAAATAGGTGGCGT 59.366 47.619 0.00 0.00 0.00 5.68
86 87 2.420058 AGGAAAGGAAATAGGTGGCG 57.580 50.000 0.00 0.00 0.00 5.69
87 88 4.505324 AGTAGGAAAGGAAATAGGTGGC 57.495 45.455 0.00 0.00 0.00 5.01
106 107 8.880750 GGCTCGATTTTAGAGTGTTTTATTAGT 58.119 33.333 0.00 0.00 37.99 2.24
107 108 8.336080 GGGCTCGATTTTAGAGTGTTTTATTAG 58.664 37.037 0.00 0.00 37.99 1.73
108 109 7.281549 GGGGCTCGATTTTAGAGTGTTTTATTA 59.718 37.037 0.00 0.00 37.99 0.98
109 110 6.095021 GGGGCTCGATTTTAGAGTGTTTTATT 59.905 38.462 0.00 0.00 37.99 1.40
110 111 5.589050 GGGGCTCGATTTTAGAGTGTTTTAT 59.411 40.000 0.00 0.00 37.99 1.40
111 112 4.939439 GGGGCTCGATTTTAGAGTGTTTTA 59.061 41.667 0.00 0.00 37.99 1.52
112 113 3.756963 GGGGCTCGATTTTAGAGTGTTTT 59.243 43.478 0.00 0.00 37.99 2.43
113 114 3.244770 TGGGGCTCGATTTTAGAGTGTTT 60.245 43.478 0.00 0.00 37.99 2.83
114 115 2.304761 TGGGGCTCGATTTTAGAGTGTT 59.695 45.455 0.00 0.00 37.99 3.32
115 116 1.906574 TGGGGCTCGATTTTAGAGTGT 59.093 47.619 0.00 0.00 37.99 3.55
116 117 2.691409 TGGGGCTCGATTTTAGAGTG 57.309 50.000 0.00 0.00 37.99 3.51
117 118 3.713826 TTTGGGGCTCGATTTTAGAGT 57.286 42.857 0.00 0.00 37.99 3.24
118 119 5.582689 ATTTTTGGGGCTCGATTTTAGAG 57.417 39.130 0.00 0.00 38.68 2.43
119 120 6.184789 AGTATTTTTGGGGCTCGATTTTAGA 58.815 36.000 0.00 0.00 0.00 2.10
120 121 6.451064 AGTATTTTTGGGGCTCGATTTTAG 57.549 37.500 0.00 0.00 0.00 1.85
121 122 6.844097 AAGTATTTTTGGGGCTCGATTTTA 57.156 33.333 0.00 0.00 0.00 1.52
122 123 5.738619 AAGTATTTTTGGGGCTCGATTTT 57.261 34.783 0.00 0.00 0.00 1.82
123 124 5.480422 AGAAAGTATTTTTGGGGCTCGATTT 59.520 36.000 0.00 0.00 39.27 2.17
124 125 5.016831 AGAAAGTATTTTTGGGGCTCGATT 58.983 37.500 0.00 0.00 39.27 3.34
125 126 4.600062 AGAAAGTATTTTTGGGGCTCGAT 58.400 39.130 0.00 0.00 39.27 3.59
126 127 4.028993 AGAAAGTATTTTTGGGGCTCGA 57.971 40.909 0.00 0.00 39.27 4.04
127 128 5.890424 TTAGAAAGTATTTTTGGGGCTCG 57.110 39.130 0.00 0.00 39.27 5.03
129 130 9.938280 GTAATTTTAGAAAGTATTTTTGGGGCT 57.062 29.630 0.00 0.00 39.27 5.19
130 131 9.938280 AGTAATTTTAGAAAGTATTTTTGGGGC 57.062 29.630 0.00 0.00 39.27 5.80
135 136 9.135843 GCGGCAGTAATTTTAGAAAGTATTTTT 57.864 29.630 0.00 0.00 39.27 1.94
136 137 8.301002 TGCGGCAGTAATTTTAGAAAGTATTTT 58.699 29.630 0.00 0.00 39.27 1.82
137 138 7.822658 TGCGGCAGTAATTTTAGAAAGTATTT 58.177 30.769 0.00 0.00 43.98 1.40
138 139 7.385778 TGCGGCAGTAATTTTAGAAAGTATT 57.614 32.000 0.00 0.00 0.00 1.89
139 140 6.995511 TGCGGCAGTAATTTTAGAAAGTAT 57.004 33.333 0.00 0.00 0.00 2.12
140 141 6.804770 TTGCGGCAGTAATTTTAGAAAGTA 57.195 33.333 1.67 0.00 0.00 2.24
141 142 5.699097 TTGCGGCAGTAATTTTAGAAAGT 57.301 34.783 1.67 0.00 0.00 2.66
142 143 8.181573 TCTTATTGCGGCAGTAATTTTAGAAAG 58.818 33.333 16.74 5.66 34.54 2.62
143 144 8.046294 TCTTATTGCGGCAGTAATTTTAGAAA 57.954 30.769 16.74 0.00 34.54 2.52
144 145 7.618502 TCTTATTGCGGCAGTAATTTTAGAA 57.381 32.000 16.74 0.00 34.54 2.10
145 146 7.041372 GGATCTTATTGCGGCAGTAATTTTAGA 60.041 37.037 16.74 11.20 34.54 2.10
146 147 7.078228 GGATCTTATTGCGGCAGTAATTTTAG 58.922 38.462 16.74 6.60 34.54 1.85
147 148 6.293190 CGGATCTTATTGCGGCAGTAATTTTA 60.293 38.462 16.74 5.59 34.54 1.52
148 149 5.505654 CGGATCTTATTGCGGCAGTAATTTT 60.506 40.000 16.74 6.45 34.54 1.82
149 150 4.024048 CGGATCTTATTGCGGCAGTAATTT 60.024 41.667 16.74 8.59 34.54 1.82
150 151 3.498397 CGGATCTTATTGCGGCAGTAATT 59.502 43.478 16.74 8.90 34.54 1.40
151 152 3.067106 CGGATCTTATTGCGGCAGTAAT 58.933 45.455 16.74 5.44 36.63 1.89
152 153 2.101750 TCGGATCTTATTGCGGCAGTAA 59.898 45.455 15.75 15.75 0.00 2.24
153 154 1.684450 TCGGATCTTATTGCGGCAGTA 59.316 47.619 1.67 1.09 0.00 2.74
154 155 0.464036 TCGGATCTTATTGCGGCAGT 59.536 50.000 1.67 2.30 0.00 4.40
155 156 0.861837 GTCGGATCTTATTGCGGCAG 59.138 55.000 1.67 0.00 34.98 4.85
156 157 0.176910 TGTCGGATCTTATTGCGGCA 59.823 50.000 0.00 0.00 42.83 5.69
157 158 1.295792 TTGTCGGATCTTATTGCGGC 58.704 50.000 0.00 0.00 35.47 6.53
158 159 5.179368 ACATAATTGTCGGATCTTATTGCGG 59.821 40.000 0.00 0.00 0.00 5.69
159 160 6.228273 ACATAATTGTCGGATCTTATTGCG 57.772 37.500 0.00 0.00 0.00 4.85
173 174 4.323336 GCGCGATTTGTTTGACATAATTGT 59.677 37.500 12.10 0.00 39.32 2.71
174 175 4.259371 GGCGCGATTTGTTTGACATAATTG 60.259 41.667 12.10 0.00 0.00 2.32
175 176 3.857093 GGCGCGATTTGTTTGACATAATT 59.143 39.130 12.10 0.00 0.00 1.40
176 177 3.119673 TGGCGCGATTTGTTTGACATAAT 60.120 39.130 12.10 0.00 0.00 1.28
177 178 2.226674 TGGCGCGATTTGTTTGACATAA 59.773 40.909 12.10 0.00 0.00 1.90
178 179 1.807142 TGGCGCGATTTGTTTGACATA 59.193 42.857 12.10 0.00 0.00 2.29
179 180 0.595588 TGGCGCGATTTGTTTGACAT 59.404 45.000 12.10 0.00 0.00 3.06
180 181 0.040514 CTGGCGCGATTTGTTTGACA 60.041 50.000 12.10 0.00 0.00 3.58
181 182 0.237235 TCTGGCGCGATTTGTTTGAC 59.763 50.000 12.10 0.00 0.00 3.18
182 183 0.516877 CTCTGGCGCGATTTGTTTGA 59.483 50.000 12.10 0.00 0.00 2.69
183 184 0.516877 TCTCTGGCGCGATTTGTTTG 59.483 50.000 12.10 0.00 0.00 2.93
184 185 1.398390 GATCTCTGGCGCGATTTGTTT 59.602 47.619 12.10 0.00 0.00 2.83
185 186 1.009829 GATCTCTGGCGCGATTTGTT 58.990 50.000 12.10 0.00 0.00 2.83
186 187 1.148157 CGATCTCTGGCGCGATTTGT 61.148 55.000 12.10 0.00 0.00 2.83
187 188 1.148157 ACGATCTCTGGCGCGATTTG 61.148 55.000 12.10 0.00 0.00 2.32
188 189 1.141881 ACGATCTCTGGCGCGATTT 59.858 52.632 12.10 0.00 0.00 2.17
189 190 1.589993 CACGATCTCTGGCGCGATT 60.590 57.895 12.10 0.00 0.00 3.34
190 191 1.800283 ATCACGATCTCTGGCGCGAT 61.800 55.000 12.10 0.00 0.00 4.58
191 192 2.393989 GATCACGATCTCTGGCGCGA 62.394 60.000 12.10 0.00 35.04 5.87
192 193 2.013483 GATCACGATCTCTGGCGCG 61.013 63.158 0.00 0.00 35.04 6.86
193 194 2.013483 CGATCACGATCTCTGGCGC 61.013 63.158 0.00 0.00 42.66 6.53
194 195 1.649267 TCGATCACGATCTCTGGCG 59.351 57.895 5.55 0.00 43.81 5.69
203 204 2.855963 GGCGTATTTTTCTCGATCACGA 59.144 45.455 0.00 0.00 46.56 4.35
204 205 2.034001 GGGCGTATTTTTCTCGATCACG 60.034 50.000 0.00 0.00 41.26 4.35
205 206 2.034001 CGGGCGTATTTTTCTCGATCAC 60.034 50.000 0.00 0.00 0.00 3.06
206 207 2.198406 CGGGCGTATTTTTCTCGATCA 58.802 47.619 0.00 0.00 0.00 2.92
207 208 1.070776 GCGGGCGTATTTTTCTCGATC 60.071 52.381 0.00 0.00 0.00 3.69
208 209 0.935196 GCGGGCGTATTTTTCTCGAT 59.065 50.000 0.00 0.00 0.00 3.59
209 210 0.390078 TGCGGGCGTATTTTTCTCGA 60.390 50.000 0.00 0.00 0.00 4.04
210 211 0.247537 GTGCGGGCGTATTTTTCTCG 60.248 55.000 0.00 0.00 0.00 4.04
211 212 0.247537 CGTGCGGGCGTATTTTTCTC 60.248 55.000 0.00 0.00 0.00 2.87
212 213 0.671163 TCGTGCGGGCGTATTTTTCT 60.671 50.000 0.00 0.00 0.00 2.52
213 214 0.375803 ATCGTGCGGGCGTATTTTTC 59.624 50.000 0.00 0.00 0.00 2.29
214 215 0.375803 GATCGTGCGGGCGTATTTTT 59.624 50.000 0.00 0.00 0.00 1.94
215 216 0.741574 TGATCGTGCGGGCGTATTTT 60.742 50.000 0.00 0.00 0.00 1.82
216 217 0.741574 TTGATCGTGCGGGCGTATTT 60.742 50.000 0.00 0.00 0.00 1.40
217 218 0.531974 ATTGATCGTGCGGGCGTATT 60.532 50.000 0.00 0.00 0.00 1.89
218 219 0.944311 GATTGATCGTGCGGGCGTAT 60.944 55.000 0.00 0.00 0.00 3.06
219 220 1.590525 GATTGATCGTGCGGGCGTA 60.591 57.895 0.00 0.00 0.00 4.42
220 221 2.890474 GATTGATCGTGCGGGCGT 60.890 61.111 0.00 0.00 0.00 5.68
221 222 3.640000 GGATTGATCGTGCGGGCG 61.640 66.667 0.00 0.00 0.00 6.13
222 223 3.640000 CGGATTGATCGTGCGGGC 61.640 66.667 4.29 0.00 0.00 6.13
223 224 2.967076 CCGGATTGATCGTGCGGG 60.967 66.667 18.89 6.79 0.00 6.13
224 225 2.202878 ACCGGATTGATCGTGCGG 60.203 61.111 23.04 23.04 35.94 5.69
225 226 2.237751 GGACCGGATTGATCGTGCG 61.238 63.158 9.46 5.10 0.00 5.34
226 227 0.742990 TTGGACCGGATTGATCGTGC 60.743 55.000 9.46 0.00 0.00 5.34
227 228 1.732941 TTTGGACCGGATTGATCGTG 58.267 50.000 9.46 0.00 0.00 4.35
228 229 2.483014 TTTTGGACCGGATTGATCGT 57.517 45.000 9.46 0.00 0.00 3.73
250 251 3.726291 CCGTGATTTCAGGGTGTTTTT 57.274 42.857 10.45 0.00 44.48 1.94
258 259 2.257286 CTTGCGGCCGTGATTTCAGG 62.257 60.000 28.70 11.51 0.00 3.86
259 260 1.135315 CTTGCGGCCGTGATTTCAG 59.865 57.895 28.70 8.36 0.00 3.02
260 261 0.676466 ATCTTGCGGCCGTGATTTCA 60.676 50.000 28.70 12.30 0.00 2.69
261 262 0.028110 GATCTTGCGGCCGTGATTTC 59.972 55.000 28.70 14.81 0.00 2.17
262 263 0.392998 AGATCTTGCGGCCGTGATTT 60.393 50.000 28.70 18.80 0.00 2.17
263 264 1.091771 CAGATCTTGCGGCCGTGATT 61.092 55.000 28.70 14.42 0.00 2.57
264 265 1.522355 CAGATCTTGCGGCCGTGAT 60.522 57.895 28.70 25.34 0.00 3.06
265 266 2.125552 CAGATCTTGCGGCCGTGA 60.126 61.111 28.70 21.89 0.00 4.35
266 267 1.298157 TTTCAGATCTTGCGGCCGTG 61.298 55.000 28.70 15.36 0.00 4.94
267 268 1.003839 TTTCAGATCTTGCGGCCGT 60.004 52.632 28.70 5.80 0.00 5.68
268 269 1.425428 GTTTCAGATCTTGCGGCCG 59.575 57.895 24.05 24.05 0.00 6.13
269 270 1.019278 TCGTTTCAGATCTTGCGGCC 61.019 55.000 0.00 0.00 0.00 6.13
270 271 0.796312 TTCGTTTCAGATCTTGCGGC 59.204 50.000 0.00 0.00 0.00 6.53
271 272 1.201812 CGTTCGTTTCAGATCTTGCGG 60.202 52.381 0.00 0.00 0.00 5.69
272 273 1.719246 TCGTTCGTTTCAGATCTTGCG 59.281 47.619 0.00 0.00 0.00 4.85
273 274 2.475111 TGTCGTTCGTTTCAGATCTTGC 59.525 45.455 0.00 0.00 0.00 4.01
274 275 4.201628 GGATGTCGTTCGTTTCAGATCTTG 60.202 45.833 0.00 0.00 0.00 3.02
275 276 3.927142 GGATGTCGTTCGTTTCAGATCTT 59.073 43.478 0.00 0.00 0.00 2.40
276 277 3.512680 GGATGTCGTTCGTTTCAGATCT 58.487 45.455 0.00 0.00 0.00 2.75
277 278 2.279136 CGGATGTCGTTCGTTTCAGATC 59.721 50.000 0.00 0.00 0.00 2.75
278 279 2.094906 TCGGATGTCGTTCGTTTCAGAT 60.095 45.455 0.00 0.00 40.32 2.90
279 280 1.267533 TCGGATGTCGTTCGTTTCAGA 59.732 47.619 0.00 0.00 40.32 3.27
280 281 1.385743 GTCGGATGTCGTTCGTTTCAG 59.614 52.381 0.00 0.00 40.32 3.02
281 282 1.411394 GTCGGATGTCGTTCGTTTCA 58.589 50.000 0.00 0.00 40.32 2.69
282 283 0.361184 CGTCGGATGTCGTTCGTTTC 59.639 55.000 0.00 0.00 40.32 2.78
283 284 0.318107 ACGTCGGATGTCGTTCGTTT 60.318 50.000 0.00 0.00 42.91 3.60
284 285 1.000233 CACGTCGGATGTCGTTCGTT 61.000 55.000 0.00 0.00 43.28 3.85
285 286 1.441515 CACGTCGGATGTCGTTCGT 60.442 57.895 0.00 0.00 44.70 3.85
286 287 1.441515 ACACGTCGGATGTCGTTCG 60.442 57.895 0.00 0.00 37.77 3.95
287 288 0.662374 ACACACGTCGGATGTCGTTC 60.662 55.000 0.00 0.00 37.77 3.95
288 289 0.937699 CACACACGTCGGATGTCGTT 60.938 55.000 0.00 0.00 37.77 3.85
289 290 1.371267 CACACACGTCGGATGTCGT 60.371 57.895 0.00 0.00 40.43 4.34
290 291 2.086426 CCACACACGTCGGATGTCG 61.086 63.158 0.00 0.00 40.90 4.35
291 292 0.108804 ATCCACACACGTCGGATGTC 60.109 55.000 0.00 0.00 38.14 3.06
292 293 0.108804 GATCCACACACGTCGGATGT 60.109 55.000 9.43 0.00 39.68 3.06
293 294 0.173481 AGATCCACACACGTCGGATG 59.827 55.000 9.43 0.00 39.68 3.51
294 295 0.173481 CAGATCCACACACGTCGGAT 59.827 55.000 5.29 5.29 42.31 4.18
295 296 1.176619 ACAGATCCACACACGTCGGA 61.177 55.000 0.00 0.00 0.00 4.55
296 297 0.319555 AACAGATCCACACACGTCGG 60.320 55.000 0.00 0.00 0.00 4.79
297 298 0.784178 CAACAGATCCACACACGTCG 59.216 55.000 0.00 0.00 0.00 5.12
298 299 0.512952 GCAACAGATCCACACACGTC 59.487 55.000 0.00 0.00 0.00 4.34
299 300 0.179059 TGCAACAGATCCACACACGT 60.179 50.000 0.00 0.00 0.00 4.49
300 301 0.943673 TTGCAACAGATCCACACACG 59.056 50.000 0.00 0.00 0.00 4.49
301 302 3.435105 TTTTGCAACAGATCCACACAC 57.565 42.857 0.00 0.00 0.00 3.82
302 303 4.669206 AATTTTGCAACAGATCCACACA 57.331 36.364 0.00 0.00 0.00 3.72
303 304 5.630680 CAGTAATTTTGCAACAGATCCACAC 59.369 40.000 0.00 0.00 0.00 3.82
304 305 5.771469 CAGTAATTTTGCAACAGATCCACA 58.229 37.500 0.00 0.00 0.00 4.17
305 306 4.622740 GCAGTAATTTTGCAACAGATCCAC 59.377 41.667 0.00 0.00 41.17 4.02
306 307 4.321899 GGCAGTAATTTTGCAACAGATCCA 60.322 41.667 0.00 0.00 43.28 3.41
307 308 4.176271 GGCAGTAATTTTGCAACAGATCC 58.824 43.478 0.00 0.00 43.28 3.36
308 309 3.853671 CGGCAGTAATTTTGCAACAGATC 59.146 43.478 0.00 0.00 43.28 2.75
309 310 3.255642 ACGGCAGTAATTTTGCAACAGAT 59.744 39.130 0.00 0.00 43.28 2.90
310 311 2.621055 ACGGCAGTAATTTTGCAACAGA 59.379 40.909 0.00 0.00 43.28 3.41
311 312 2.979813 GACGGCAGTAATTTTGCAACAG 59.020 45.455 0.00 6.89 43.28 3.16
312 313 2.621055 AGACGGCAGTAATTTTGCAACA 59.379 40.909 0.00 0.00 43.28 3.33
313 314 2.979813 CAGACGGCAGTAATTTTGCAAC 59.020 45.455 0.00 0.00 43.28 4.17
314 315 2.030363 CCAGACGGCAGTAATTTTGCAA 60.030 45.455 14.26 0.00 43.28 4.08
315 316 1.539388 CCAGACGGCAGTAATTTTGCA 59.461 47.619 14.26 0.00 43.28 4.08
316 317 1.539827 ACCAGACGGCAGTAATTTTGC 59.460 47.619 0.00 6.17 40.80 3.68
317 318 5.365403 TTTACCAGACGGCAGTAATTTTG 57.635 39.130 4.91 0.00 34.57 2.44
318 319 6.183360 GCTATTTACCAGACGGCAGTAATTTT 60.183 38.462 4.91 0.00 34.57 1.82
319 320 5.296035 GCTATTTACCAGACGGCAGTAATTT 59.704 40.000 4.91 0.24 34.57 1.82
320 321 4.814771 GCTATTTACCAGACGGCAGTAATT 59.185 41.667 4.91 4.76 34.57 1.40
321 322 4.101119 AGCTATTTACCAGACGGCAGTAAT 59.899 41.667 4.91 0.03 34.57 1.89
322 323 3.449737 AGCTATTTACCAGACGGCAGTAA 59.550 43.478 0.00 0.00 34.57 2.24
323 324 3.028850 AGCTATTTACCAGACGGCAGTA 58.971 45.455 0.00 0.00 34.57 2.74
324 325 1.831736 AGCTATTTACCAGACGGCAGT 59.168 47.619 0.00 0.00 34.57 4.40
325 326 2.604046 AGCTATTTACCAGACGGCAG 57.396 50.000 0.00 0.00 34.57 4.85
326 327 3.343941 AAAGCTATTTACCAGACGGCA 57.656 42.857 0.00 0.00 34.57 5.69
327 328 3.064958 GGAAAAGCTATTTACCAGACGGC 59.935 47.826 0.00 0.00 34.57 5.68
328 329 3.308866 CGGAAAAGCTATTTACCAGACGG 59.691 47.826 0.00 0.00 38.77 4.79
329 330 3.930848 ACGGAAAAGCTATTTACCAGACG 59.069 43.478 0.00 0.00 0.00 4.18
330 331 5.874895 AACGGAAAAGCTATTTACCAGAC 57.125 39.130 0.00 0.00 0.00 3.51
331 332 9.841295 AATATAACGGAAAAGCTATTTACCAGA 57.159 29.630 0.00 0.00 0.00 3.86
381 383 4.216257 ACATGAACTTGCACTCAATGTACC 59.784 41.667 0.00 0.00 0.00 3.34
385 387 6.592798 AAAAACATGAACTTGCACTCAATG 57.407 33.333 0.00 0.00 0.00 2.82
408 411 7.721402 ACATGAACTTGCAGTTACCATTTAAA 58.279 30.769 0.00 0.00 38.80 1.52
418 421 5.590530 TTTTGGTACATGAACTTGCAGTT 57.409 34.783 0.00 1.82 38.97 3.16
421 424 5.911752 ACATTTTTGGTACATGAACTTGCA 58.088 33.333 0.00 0.00 39.30 4.08
508 511 3.449737 ACTTTGATTGGGCTGATGGATTG 59.550 43.478 0.00 0.00 0.00 2.67
623 806 3.135994 GCTAAACAGAACCGTTCCAAGA 58.864 45.455 7.68 0.00 0.00 3.02
775 965 1.673033 CCTGAATTCGCTCTGGTTCGT 60.673 52.381 0.04 0.00 31.52 3.85
777 967 2.386661 TCCTGAATTCGCTCTGGTTC 57.613 50.000 0.04 0.00 36.20 3.62
795 994 2.109181 GGCTGGCCCGTGTAGATC 59.891 66.667 0.00 0.00 0.00 2.75
816 1015 2.964978 GCCACCATGCCAACACTC 59.035 61.111 0.00 0.00 0.00 3.51
854 1070 2.200092 GGGGGTTTGCTGTGGGAA 59.800 61.111 0.00 0.00 0.00 3.97
1103 1324 8.208224 TGAAGTTTAAGTATGGAAGTGAGTTCA 58.792 33.333 2.06 0.00 36.82 3.18
1113 1334 7.987458 CAGAGCCTTATGAAGTTTAAGTATGGA 59.013 37.037 0.00 0.00 0.00 3.41
1154 1375 4.791411 GCGCACAAGTTAAGGATTGACAAA 60.791 41.667 0.30 0.00 37.00 2.83
1159 1380 2.226437 ACAGCGCACAAGTTAAGGATTG 59.774 45.455 11.47 0.00 0.00 2.67
1240 1461 1.445582 GTACACCTTGGCGTCCTCG 60.446 63.158 0.00 0.00 40.37 4.63
1249 1470 0.586319 CACCGTTGCAGTACACCTTG 59.414 55.000 0.00 0.00 0.00 3.61
1551 1772 2.746269 TGAGTTCGGGAGTTAACAACG 58.254 47.619 8.61 9.09 36.23 4.10
1553 1774 6.128117 GCATAATTGAGTTCGGGAGTTAACAA 60.128 38.462 8.61 0.00 0.00 2.83
1610 1831 3.304592 CCAAATCAATCAACGTGCAGACA 60.305 43.478 0.00 0.00 0.00 3.41
1704 1931 4.055360 TCAACGTTGACACATACTGGAAG 58.945 43.478 26.53 0.00 33.59 3.46
1728 1955 6.567687 TTTTAGAGCACCGATTTCATGAAA 57.432 33.333 22.52 22.52 34.46 2.69
1810 2037 7.040478 TGTGTATTCTAGCTGTGAGCAATTTTT 60.040 33.333 0.00 0.00 45.56 1.94
1811 2038 6.430925 TGTGTATTCTAGCTGTGAGCAATTTT 59.569 34.615 0.00 0.00 45.56 1.82
1812 2039 5.939883 TGTGTATTCTAGCTGTGAGCAATTT 59.060 36.000 0.00 0.00 45.56 1.82
1813 2040 5.491070 TGTGTATTCTAGCTGTGAGCAATT 58.509 37.500 0.00 0.00 45.56 2.32
1814 2041 5.089970 TGTGTATTCTAGCTGTGAGCAAT 57.910 39.130 0.00 0.00 45.56 3.56
1894 2122 2.292267 CGAAACTTGCCCATATGCTCT 58.708 47.619 0.00 0.00 0.00 4.09
1898 2126 4.804108 TCAAAACGAAACTTGCCCATATG 58.196 39.130 0.00 0.00 0.00 1.78
1907 2135 7.978975 TCAGAATGGAAATTCAAAACGAAACTT 59.021 29.630 0.00 0.00 34.81 2.66
1925 2153 4.210331 CCTCCAGGGTAATTTCAGAATGG 58.790 47.826 0.00 0.00 36.16 3.16
1948 2176 5.125356 TGGTGTCATTTACATATGCTCTGG 58.875 41.667 1.58 0.00 41.10 3.86
1949 2177 6.484308 TCATGGTGTCATTTACATATGCTCTG 59.516 38.462 1.58 0.00 41.10 3.35
1950 2178 6.594744 TCATGGTGTCATTTACATATGCTCT 58.405 36.000 1.58 0.00 41.10 4.09
1953 2181 6.794374 TGTTCATGGTGTCATTTACATATGC 58.206 36.000 1.58 0.00 41.10 3.14
1954 2182 9.240159 CAATGTTCATGGTGTCATTTACATATG 57.760 33.333 0.00 0.00 41.10 1.78
1979 2225 3.647636 TCAAATTTTGACCCCTCAACCA 58.352 40.909 7.74 0.00 36.06 3.67
2078 2324 5.929415 GGTGATCTAAAGTCTAGGCTAATGC 59.071 44.000 0.00 0.00 38.76 3.56
2085 2331 9.083422 TCATGATTAGGTGATCTAAAGTCTAGG 57.917 37.037 0.00 0.00 40.89 3.02
2109 2355 5.817296 CCTTATTCCATCTCGTTGTTCATCA 59.183 40.000 0.00 0.00 0.00 3.07
2119 2365 5.290386 GTGGTAAGACCTTATTCCATCTCG 58.710 45.833 0.00 0.00 39.58 4.04
2133 2379 3.010420 GCTCCTTCATTGGTGGTAAGAC 58.990 50.000 0.00 0.00 0.00 3.01
2151 2397 0.179045 ATCGCCTACACCAATGGCTC 60.179 55.000 0.00 0.00 44.09 4.70
2220 2466 2.844839 GGAGGGATGCCGCTACCT 60.845 66.667 6.99 1.45 35.55 3.08
2278 2524 5.172205 GTTGTGTGATAGGAAGACCTTCTC 58.828 45.833 9.35 1.21 45.36 2.87
2290 2536 0.537188 AGGGGAGCGTTGTGTGATAG 59.463 55.000 0.00 0.00 0.00 2.08
2291 2537 1.754803 CTAGGGGAGCGTTGTGTGATA 59.245 52.381 0.00 0.00 0.00 2.15
2292 2538 0.537188 CTAGGGGAGCGTTGTGTGAT 59.463 55.000 0.00 0.00 0.00 3.06
2293 2539 0.541063 TCTAGGGGAGCGTTGTGTGA 60.541 55.000 0.00 0.00 0.00 3.58
2294 2540 0.537188 ATCTAGGGGAGCGTTGTGTG 59.463 55.000 0.00 0.00 0.00 3.82
2295 2541 0.824759 GATCTAGGGGAGCGTTGTGT 59.175 55.000 0.00 0.00 0.00 3.72
2296 2542 3.669354 GATCTAGGGGAGCGTTGTG 57.331 57.895 0.00 0.00 0.00 3.33
2329 2575 4.382685 CGTCTACTTTGCCCTCCTAAATCA 60.383 45.833 0.00 0.00 0.00 2.57
2355 2601 1.340658 CACGATCTGACCTGTTCACG 58.659 55.000 0.00 0.00 0.00 4.35
2363 2609 0.458543 ATGACACGCACGATCTGACC 60.459 55.000 0.00 0.00 0.00 4.02
2408 2654 4.038042 TGGTTTAGGTCATCTGATCGCTAG 59.962 45.833 0.00 0.00 0.00 3.42
2410 2656 2.766263 TGGTTTAGGTCATCTGATCGCT 59.234 45.455 0.00 0.00 0.00 4.93
2420 2666 0.906775 GATCGGGGTGGTTTAGGTCA 59.093 55.000 0.00 0.00 0.00 4.02
2446 2708 2.242708 ACCCCCTTGACACTAACAAACA 59.757 45.455 0.00 0.00 0.00 2.83
2454 2716 0.683412 GTTCGTACCCCCTTGACACT 59.317 55.000 0.00 0.00 0.00 3.55
2474 2736 2.489722 GGGAAGAAGGTCATGAAGCAAC 59.510 50.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.