Multiple sequence alignment - TraesCS3A01G226600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G226600 chr3A 100.000 3301 0 0 1 3301 423969670 423966370 0.000000e+00 6096.0
1 TraesCS3A01G226600 chr3D 96.800 1875 48 7 1431 3301 305877281 305875415 0.000000e+00 3120.0
2 TraesCS3A01G226600 chr3D 87.321 418 31 17 733 1137 305878043 305877635 3.000000e-125 459.0
3 TraesCS3A01G226600 chr3D 93.562 233 10 2 1155 1383 305877589 305877358 3.150000e-90 342.0
4 TraesCS3A01G226600 chr3D 86.716 271 21 5 399 668 305878313 305878057 1.500000e-73 287.0
5 TraesCS3A01G226600 chr3B 89.412 2229 111 54 392 2550 415922801 415924974 0.000000e+00 2693.0
6 TraesCS3A01G226600 chr3B 97.091 722 19 2 2581 3301 415924971 415925691 0.000000e+00 1216.0
7 TraesCS3A01G226600 chr1A 88.529 401 38 6 1 397 30254074 30253678 2.300000e-131 479.0
8 TraesCS3A01G226600 chr6D 88.802 384 41 1 1 382 435766258 435765875 1.390000e-128 470.0
9 TraesCS3A01G226600 chr6D 82.031 384 65 3 1 382 133962774 133963155 1.140000e-84 324.0
10 TraesCS3A01G226600 chr5A 86.352 403 51 3 1 401 104188290 104187890 1.410000e-118 436.0
11 TraesCS3A01G226600 chr5A 84.833 389 51 7 1 382 655160522 655160909 5.170000e-103 385.0
12 TraesCS3A01G226600 chr5D 88.192 271 28 4 128 396 115927718 115927450 1.480000e-83 320.0
13 TraesCS3A01G226600 chr7D 81.558 385 65 4 1 382 630777876 630777495 2.470000e-81 313.0
14 TraesCS3A01G226600 chr1D 82.245 383 48 8 1 382 372526871 372526508 2.470000e-81 313.0
15 TraesCS3A01G226600 chr1B 80.198 404 65 13 1 398 561768822 561768428 4.170000e-74 289.0
16 TraesCS3A01G226600 chr4D 81.232 357 59 7 48 401 27138592 27138943 6.970000e-72 281.0
17 TraesCS3A01G226600 chr4D 79.221 385 64 6 1 382 65085593 65085222 1.520000e-63 254.0
18 TraesCS3A01G226600 chr4A 78.345 411 56 26 1 401 438230285 438230672 5.510000e-58 235.0
19 TraesCS3A01G226600 chr5B 81.203 133 20 5 270 398 446050009 446049878 5.830000e-18 102.0
20 TraesCS3A01G226600 chr7B 86.250 80 9 2 320 398 601387255 601387177 5.870000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G226600 chr3A 423966370 423969670 3300 True 6096.0 6096 100.00000 1 3301 1 chr3A.!!$R1 3300
1 TraesCS3A01G226600 chr3D 305875415 305878313 2898 True 1052.0 3120 91.09975 399 3301 4 chr3D.!!$R1 2902
2 TraesCS3A01G226600 chr3B 415922801 415925691 2890 False 1954.5 2693 93.25150 392 3301 2 chr3B.!!$F1 2909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 450 0.031857 CTGCTCTGCCGTCCATAGAG 59.968 60.0 0.0 0.0 40.63 2.43 F
878 925 0.108709 CGCTCTTGCTTGCTCTCTCT 60.109 55.0 0.0 0.0 36.97 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1374 1470 0.040646 TCCGTGGCTATCCCGGATAT 59.959 55.000 0.73 0.0 44.59 1.63 R
2522 2679 1.677576 TGTCAGCAGTTTTGAAGCCTG 59.322 47.619 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.961554 CGTGAGGAACAAAATTACTATCAAGC 59.038 38.462 0.00 0.00 0.00 4.01
29 30 7.360861 CGTGAGGAACAAAATTACTATCAAGCA 60.361 37.037 0.00 0.00 0.00 3.91
30 31 7.750903 GTGAGGAACAAAATTACTATCAAGCAC 59.249 37.037 0.00 0.00 0.00 4.40
31 32 7.446931 TGAGGAACAAAATTACTATCAAGCACA 59.553 33.333 0.00 0.00 0.00 4.57
32 33 8.177119 AGGAACAAAATTACTATCAAGCACAA 57.823 30.769 0.00 0.00 0.00 3.33
33 34 8.299570 AGGAACAAAATTACTATCAAGCACAAG 58.700 33.333 0.00 0.00 0.00 3.16
34 35 8.082242 GGAACAAAATTACTATCAAGCACAAGT 58.918 33.333 0.00 0.00 0.00 3.16
35 36 9.463443 GAACAAAATTACTATCAAGCACAAGTT 57.537 29.630 0.00 0.00 0.00 2.66
36 37 9.816354 AACAAAATTACTATCAAGCACAAGTTT 57.184 25.926 0.00 0.00 0.00 2.66
37 38 9.463443 ACAAAATTACTATCAAGCACAAGTTTC 57.537 29.630 0.00 0.00 0.00 2.78
38 39 8.915654 CAAAATTACTATCAAGCACAAGTTTCC 58.084 33.333 0.00 0.00 0.00 3.13
39 40 8.409358 AAATTACTATCAAGCACAAGTTTCCT 57.591 30.769 0.00 0.00 0.00 3.36
40 41 6.801539 TTACTATCAAGCACAAGTTTCCTG 57.198 37.500 0.00 0.00 0.00 3.86
41 42 3.503748 ACTATCAAGCACAAGTTTCCTGC 59.496 43.478 0.00 0.00 0.00 4.85
42 43 2.057137 TCAAGCACAAGTTTCCTGCT 57.943 45.000 0.00 0.00 43.21 4.24
43 44 1.949525 TCAAGCACAAGTTTCCTGCTC 59.050 47.619 0.00 0.00 40.43 4.26
44 45 1.677576 CAAGCACAAGTTTCCTGCTCA 59.322 47.619 0.00 0.00 40.43 4.26
45 46 1.312815 AGCACAAGTTTCCTGCTCAC 58.687 50.000 0.00 0.00 36.50 3.51
46 47 0.312102 GCACAAGTTTCCTGCTCACC 59.688 55.000 0.00 0.00 0.00 4.02
47 48 0.954452 CACAAGTTTCCTGCTCACCC 59.046 55.000 0.00 0.00 0.00 4.61
48 49 0.178990 ACAAGTTTCCTGCTCACCCC 60.179 55.000 0.00 0.00 0.00 4.95
49 50 1.073199 AAGTTTCCTGCTCACCCCG 59.927 57.895 0.00 0.00 0.00 5.73
50 51 1.705997 AAGTTTCCTGCTCACCCCGT 61.706 55.000 0.00 0.00 0.00 5.28
51 52 1.228154 GTTTCCTGCTCACCCCGTT 60.228 57.895 0.00 0.00 0.00 4.44
52 53 1.228124 TTTCCTGCTCACCCCGTTG 60.228 57.895 0.00 0.00 0.00 4.10
53 54 1.701031 TTTCCTGCTCACCCCGTTGA 61.701 55.000 0.00 0.00 0.00 3.18
54 55 2.046892 CCTGCTCACCCCGTTGAG 60.047 66.667 2.37 2.37 45.15 3.02
55 56 2.583441 CCTGCTCACCCCGTTGAGA 61.583 63.158 9.47 0.00 45.19 3.27
56 57 1.599047 CTGCTCACCCCGTTGAGAT 59.401 57.895 9.47 0.00 45.19 2.75
57 58 0.036010 CTGCTCACCCCGTTGAGATT 60.036 55.000 9.47 0.00 45.19 2.40
58 59 0.036388 TGCTCACCCCGTTGAGATTC 60.036 55.000 9.47 0.00 45.19 2.52
59 60 0.250513 GCTCACCCCGTTGAGATTCT 59.749 55.000 9.47 0.00 45.19 2.40
60 61 1.339151 GCTCACCCCGTTGAGATTCTT 60.339 52.381 9.47 0.00 45.19 2.52
61 62 2.876079 GCTCACCCCGTTGAGATTCTTT 60.876 50.000 9.47 0.00 45.19 2.52
62 63 3.412386 CTCACCCCGTTGAGATTCTTTT 58.588 45.455 0.70 0.00 45.19 2.27
63 64 3.408634 TCACCCCGTTGAGATTCTTTTC 58.591 45.455 0.00 0.00 0.00 2.29
64 65 3.146066 CACCCCGTTGAGATTCTTTTCA 58.854 45.455 0.00 0.00 0.00 2.69
65 66 3.568007 CACCCCGTTGAGATTCTTTTCAA 59.432 43.478 0.00 0.00 0.00 2.69
66 67 4.037446 CACCCCGTTGAGATTCTTTTCAAA 59.963 41.667 0.00 0.00 35.29 2.69
67 68 4.832823 ACCCCGTTGAGATTCTTTTCAAAT 59.167 37.500 0.00 0.00 35.29 2.32
68 69 5.163513 CCCCGTTGAGATTCTTTTCAAATG 58.836 41.667 0.00 0.00 35.29 2.32
69 70 5.278957 CCCCGTTGAGATTCTTTTCAAATGT 60.279 40.000 0.00 0.00 35.29 2.71
70 71 5.858581 CCCGTTGAGATTCTTTTCAAATGTC 59.141 40.000 0.00 0.00 35.29 3.06
71 72 6.437928 CCGTTGAGATTCTTTTCAAATGTCA 58.562 36.000 0.00 0.00 35.37 3.58
72 73 7.086376 CCGTTGAGATTCTTTTCAAATGTCAT 58.914 34.615 0.00 0.00 36.60 3.06
73 74 7.272084 CCGTTGAGATTCTTTTCAAATGTCATC 59.728 37.037 0.00 0.00 36.60 2.92
74 75 8.019669 CGTTGAGATTCTTTTCAAATGTCATCT 58.980 33.333 0.00 0.00 36.60 2.90
75 76 9.688592 GTTGAGATTCTTTTCAAATGTCATCTT 57.311 29.630 0.00 0.00 36.60 2.40
83 84 9.567776 TCTTTTCAAATGTCATCTTTACCTACA 57.432 29.630 0.00 0.00 0.00 2.74
84 85 9.831737 CTTTTCAAATGTCATCTTTACCTACAG 57.168 33.333 0.00 0.00 0.00 2.74
85 86 7.921786 TTCAAATGTCATCTTTACCTACAGG 57.078 36.000 0.00 0.00 42.17 4.00
86 87 5.880332 TCAAATGTCATCTTTACCTACAGGC 59.120 40.000 0.00 0.00 39.32 4.85
87 88 5.700402 AATGTCATCTTTACCTACAGGCT 57.300 39.130 0.00 0.00 39.32 4.58
88 89 5.700402 ATGTCATCTTTACCTACAGGCTT 57.300 39.130 0.00 0.00 39.32 4.35
89 90 4.832248 TGTCATCTTTACCTACAGGCTTG 58.168 43.478 0.00 0.00 39.32 4.01
90 91 4.192317 GTCATCTTTACCTACAGGCTTGG 58.808 47.826 0.00 0.00 39.32 3.61
91 92 3.199946 TCATCTTTACCTACAGGCTTGGG 59.800 47.826 0.00 0.00 39.32 4.12
92 93 1.280998 TCTTTACCTACAGGCTTGGGC 59.719 52.381 0.00 0.00 39.32 5.36
93 94 0.035820 TTTACCTACAGGCTTGGGCG 60.036 55.000 0.00 0.00 39.32 6.13
94 95 2.530958 TTACCTACAGGCTTGGGCGC 62.531 60.000 0.00 0.00 39.32 6.53
103 104 4.757355 CTTGGGCGCCATTGGGGA 62.757 66.667 30.85 4.08 40.01 4.81
104 105 4.307502 TTGGGCGCCATTGGGGAA 62.308 61.111 30.85 6.14 40.01 3.97
105 106 4.757355 TGGGCGCCATTGGGGAAG 62.757 66.667 30.85 0.00 40.01 3.46
108 109 3.381136 GCGCCATTGGGGAAGCAA 61.381 61.111 22.88 0.00 40.30 3.91
109 110 2.724273 GCGCCATTGGGGAAGCAAT 61.724 57.895 22.88 0.00 40.30 3.56
110 111 1.142314 CGCCATTGGGGAAGCAATG 59.858 57.895 14.33 0.00 40.01 2.82
111 112 1.606885 CGCCATTGGGGAAGCAATGT 61.607 55.000 14.33 0.00 40.01 2.71
112 113 0.108041 GCCATTGGGGAAGCAATGTG 60.108 55.000 4.53 0.00 40.01 3.21
113 114 1.559368 CCATTGGGGAAGCAATGTGA 58.441 50.000 0.00 0.00 40.01 3.58
114 115 1.205417 CCATTGGGGAAGCAATGTGAC 59.795 52.381 0.00 0.00 40.01 3.67
115 116 1.894466 CATTGGGGAAGCAATGTGACA 59.106 47.619 0.00 0.00 34.94 3.58
116 117 2.079170 TTGGGGAAGCAATGTGACAA 57.921 45.000 0.00 0.00 0.00 3.18
117 118 1.619654 TGGGGAAGCAATGTGACAAG 58.380 50.000 0.00 0.00 0.00 3.16
118 119 0.890683 GGGGAAGCAATGTGACAAGG 59.109 55.000 0.00 0.00 0.00 3.61
119 120 1.547675 GGGGAAGCAATGTGACAAGGA 60.548 52.381 0.00 0.00 0.00 3.36
120 121 2.450476 GGGAAGCAATGTGACAAGGAT 58.550 47.619 0.00 0.00 0.00 3.24
121 122 2.424956 GGGAAGCAATGTGACAAGGATC 59.575 50.000 0.00 0.00 0.00 3.36
122 123 2.096496 GGAAGCAATGTGACAAGGATCG 59.904 50.000 0.00 0.00 0.00 3.69
123 124 1.089920 AGCAATGTGACAAGGATCGC 58.910 50.000 0.00 0.00 0.00 4.58
124 125 0.804364 GCAATGTGACAAGGATCGCA 59.196 50.000 0.00 0.00 42.98 5.10
126 127 2.793585 GCAATGTGACAAGGATCGCATG 60.794 50.000 2.78 0.00 46.60 4.06
127 128 2.679336 CAATGTGACAAGGATCGCATGA 59.321 45.455 0.00 0.00 46.60 3.07
128 129 2.696989 TGTGACAAGGATCGCATGAT 57.303 45.000 0.00 0.00 34.21 2.45
129 130 3.136763 ATGTGACAAGGATCGCATGATC 58.863 45.455 0.00 0.00 45.78 2.92
136 137 3.755697 GATCGCATGATCGAGACGA 57.244 52.632 0.00 0.00 41.51 4.20
138 139 1.910175 GATCGCATGATCGAGACGATG 59.090 52.381 14.77 1.60 47.00 3.84
139 140 0.040067 TCGCATGATCGAGACGATGG 60.040 55.000 11.26 2.81 47.00 3.51
140 141 0.040067 CGCATGATCGAGACGATGGA 60.040 55.000 11.26 0.00 47.00 3.41
141 142 1.695813 GCATGATCGAGACGATGGAG 58.304 55.000 11.26 2.52 47.00 3.86
142 143 1.695813 CATGATCGAGACGATGGAGC 58.304 55.000 11.26 0.00 47.00 4.70
143 144 1.000938 CATGATCGAGACGATGGAGCA 60.001 52.381 11.26 3.95 47.00 4.26
144 145 0.665298 TGATCGAGACGATGGAGCAG 59.335 55.000 11.26 0.00 47.00 4.24
145 146 0.039617 GATCGAGACGATGGAGCAGG 60.040 60.000 11.26 0.00 47.00 4.85
146 147 0.753479 ATCGAGACGATGGAGCAGGT 60.753 55.000 5.86 0.00 45.24 4.00
147 148 1.064946 CGAGACGATGGAGCAGGTC 59.935 63.158 0.00 0.00 0.00 3.85
155 156 2.046507 GGAGCAGGTCCAGCTGTG 60.047 66.667 14.41 5.26 46.10 3.66
156 157 2.745492 GAGCAGGTCCAGCTGTGC 60.745 66.667 14.41 16.92 43.58 4.57
157 158 3.541950 GAGCAGGTCCAGCTGTGCA 62.542 63.158 23.99 1.81 43.58 4.57
158 159 2.360852 GCAGGTCCAGCTGTGCAT 60.361 61.111 19.05 4.36 35.91 3.96
159 160 2.697761 GCAGGTCCAGCTGTGCATG 61.698 63.158 19.05 15.90 35.91 4.06
160 161 1.002990 CAGGTCCAGCTGTGCATGA 60.003 57.895 13.81 0.00 0.00 3.07
161 162 1.002868 AGGTCCAGCTGTGCATGAC 60.003 57.895 13.81 11.91 32.98 3.06
162 163 2.393768 GGTCCAGCTGTGCATGACG 61.394 63.158 13.81 0.00 34.00 4.35
163 164 1.374631 GTCCAGCTGTGCATGACGA 60.375 57.895 13.81 0.00 0.00 4.20
164 165 1.079612 TCCAGCTGTGCATGACGAG 60.080 57.895 13.81 0.00 0.00 4.18
165 166 1.079612 CCAGCTGTGCATGACGAGA 60.080 57.895 13.81 0.00 0.00 4.04
166 167 1.082679 CCAGCTGTGCATGACGAGAG 61.083 60.000 13.81 0.00 0.00 3.20
167 168 1.447489 AGCTGTGCATGACGAGAGC 60.447 57.895 0.00 0.00 0.00 4.09
168 169 1.739196 GCTGTGCATGACGAGAGCA 60.739 57.895 0.00 0.00 35.63 4.26
169 170 1.293963 GCTGTGCATGACGAGAGCAA 61.294 55.000 0.00 0.00 40.35 3.91
170 171 0.720027 CTGTGCATGACGAGAGCAAG 59.280 55.000 0.00 0.00 40.35 4.01
171 172 0.318120 TGTGCATGACGAGAGCAAGA 59.682 50.000 0.00 0.00 40.35 3.02
172 173 0.718343 GTGCATGACGAGAGCAAGAC 59.282 55.000 0.00 0.00 40.35 3.01
173 174 0.605083 TGCATGACGAGAGCAAGACT 59.395 50.000 0.00 0.00 34.97 3.24
174 175 1.001293 TGCATGACGAGAGCAAGACTT 59.999 47.619 0.00 0.00 34.97 3.01
175 176 1.658095 GCATGACGAGAGCAAGACTTC 59.342 52.381 0.00 0.00 0.00 3.01
176 177 2.928301 GCATGACGAGAGCAAGACTTCA 60.928 50.000 0.00 0.00 0.00 3.02
177 178 3.320626 CATGACGAGAGCAAGACTTCAA 58.679 45.455 0.00 0.00 0.00 2.69
178 179 3.018598 TGACGAGAGCAAGACTTCAAG 57.981 47.619 0.00 0.00 0.00 3.02
179 180 2.623416 TGACGAGAGCAAGACTTCAAGA 59.377 45.455 0.00 0.00 0.00 3.02
180 181 3.068165 TGACGAGAGCAAGACTTCAAGAA 59.932 43.478 0.00 0.00 0.00 2.52
181 182 3.385577 ACGAGAGCAAGACTTCAAGAAC 58.614 45.455 0.00 0.00 0.00 3.01
182 183 3.181475 ACGAGAGCAAGACTTCAAGAACA 60.181 43.478 0.00 0.00 0.00 3.18
183 184 3.804325 CGAGAGCAAGACTTCAAGAACAA 59.196 43.478 0.00 0.00 0.00 2.83
184 185 4.318404 CGAGAGCAAGACTTCAAGAACAAC 60.318 45.833 0.00 0.00 0.00 3.32
185 186 4.517285 AGAGCAAGACTTCAAGAACAACA 58.483 39.130 0.00 0.00 0.00 3.33
186 187 4.943705 AGAGCAAGACTTCAAGAACAACAA 59.056 37.500 0.00 0.00 0.00 2.83
187 188 5.065731 AGAGCAAGACTTCAAGAACAACAAG 59.934 40.000 0.00 0.00 0.00 3.16
188 189 3.793492 GCAAGACTTCAAGAACAACAAGC 59.207 43.478 0.00 0.00 0.00 4.01
189 190 4.439289 GCAAGACTTCAAGAACAACAAGCT 60.439 41.667 0.00 0.00 0.00 3.74
190 191 5.644644 CAAGACTTCAAGAACAACAAGCTT 58.355 37.500 0.00 0.00 0.00 3.74
191 192 5.240713 AGACTTCAAGAACAACAAGCTTG 57.759 39.130 24.84 24.84 40.16 4.01
192 193 4.943705 AGACTTCAAGAACAACAAGCTTGA 59.056 37.500 32.50 3.94 44.33 3.02
193 194 5.065731 AGACTTCAAGAACAACAAGCTTGAG 59.934 40.000 32.50 24.09 45.90 3.02
194 195 3.698029 TCAAGAACAACAAGCTTGAGC 57.302 42.857 32.50 15.25 42.03 4.26
195 196 2.358898 TCAAGAACAACAAGCTTGAGCC 59.641 45.455 32.50 17.51 42.03 4.70
196 197 2.355010 AGAACAACAAGCTTGAGCCT 57.645 45.000 32.50 19.13 43.38 4.58
197 198 2.659428 AGAACAACAAGCTTGAGCCTT 58.341 42.857 32.50 13.60 43.38 4.35
198 199 3.026694 AGAACAACAAGCTTGAGCCTTT 58.973 40.909 32.50 13.22 43.38 3.11
199 200 3.448660 AGAACAACAAGCTTGAGCCTTTT 59.551 39.130 32.50 12.47 43.38 2.27
200 201 3.169355 ACAACAAGCTTGAGCCTTTTG 57.831 42.857 32.50 24.35 43.38 2.44
201 202 1.862827 CAACAAGCTTGAGCCTTTTGC 59.137 47.619 32.50 0.00 43.38 3.68
215 216 5.509605 GCCTTTTGCGTTTAGTTTATTGG 57.490 39.130 0.00 0.00 0.00 3.16
216 217 4.986034 GCCTTTTGCGTTTAGTTTATTGGT 59.014 37.500 0.00 0.00 0.00 3.67
217 218 5.107645 GCCTTTTGCGTTTAGTTTATTGGTG 60.108 40.000 0.00 0.00 0.00 4.17
218 219 5.980715 CCTTTTGCGTTTAGTTTATTGGTGT 59.019 36.000 0.00 0.00 0.00 4.16
219 220 6.143278 CCTTTTGCGTTTAGTTTATTGGTGTC 59.857 38.462 0.00 0.00 0.00 3.67
220 221 4.392619 TGCGTTTAGTTTATTGGTGTCG 57.607 40.909 0.00 0.00 0.00 4.35
221 222 3.158268 GCGTTTAGTTTATTGGTGTCGC 58.842 45.455 0.00 0.00 0.00 5.19
222 223 3.400995 CGTTTAGTTTATTGGTGTCGCG 58.599 45.455 0.00 0.00 0.00 5.87
223 224 3.121611 CGTTTAGTTTATTGGTGTCGCGA 59.878 43.478 3.71 3.71 0.00 5.87
224 225 4.376210 CGTTTAGTTTATTGGTGTCGCGAA 60.376 41.667 12.06 0.00 0.00 4.70
225 226 4.650545 TTAGTTTATTGGTGTCGCGAAC 57.349 40.909 12.06 11.64 0.00 3.95
226 227 1.802365 AGTTTATTGGTGTCGCGAACC 59.198 47.619 24.51 24.51 38.26 3.62
227 228 1.802365 GTTTATTGGTGTCGCGAACCT 59.198 47.619 28.33 18.11 38.60 3.50
228 229 2.172851 TTATTGGTGTCGCGAACCTT 57.827 45.000 28.33 21.36 38.60 3.50
229 230 1.434555 TATTGGTGTCGCGAACCTTG 58.565 50.000 28.33 0.00 38.60 3.61
230 231 0.534203 ATTGGTGTCGCGAACCTTGT 60.534 50.000 28.33 17.45 38.60 3.16
231 232 0.745128 TTGGTGTCGCGAACCTTGTT 60.745 50.000 28.33 0.00 38.60 2.83
232 233 0.104487 TGGTGTCGCGAACCTTGTTA 59.896 50.000 28.33 14.00 38.60 2.41
233 234 1.270412 TGGTGTCGCGAACCTTGTTAT 60.270 47.619 28.33 0.00 38.60 1.89
234 235 1.127951 GGTGTCGCGAACCTTGTTATG 59.872 52.381 24.19 0.00 34.66 1.90
235 236 2.063266 GTGTCGCGAACCTTGTTATGA 58.937 47.619 12.06 0.00 0.00 2.15
236 237 2.477375 GTGTCGCGAACCTTGTTATGAA 59.523 45.455 12.06 0.00 0.00 2.57
237 238 3.059461 GTGTCGCGAACCTTGTTATGAAA 60.059 43.478 12.06 0.00 0.00 2.69
238 239 3.749088 TGTCGCGAACCTTGTTATGAAAT 59.251 39.130 12.06 0.00 0.00 2.17
239 240 4.930405 TGTCGCGAACCTTGTTATGAAATA 59.070 37.500 12.06 0.00 0.00 1.40
240 241 5.583061 TGTCGCGAACCTTGTTATGAAATAT 59.417 36.000 12.06 0.00 0.00 1.28
241 242 6.127403 GTCGCGAACCTTGTTATGAAATATC 58.873 40.000 12.06 0.00 0.00 1.63
242 243 5.813157 TCGCGAACCTTGTTATGAAATATCA 59.187 36.000 6.20 0.00 40.57 2.15
243 244 6.314152 TCGCGAACCTTGTTATGAAATATCAA 59.686 34.615 6.20 0.00 39.49 2.57
244 245 6.410914 CGCGAACCTTGTTATGAAATATCAAC 59.589 38.462 0.00 0.00 39.49 3.18
245 246 6.410914 GCGAACCTTGTTATGAAATATCAACG 59.589 38.462 0.00 0.00 39.49 4.10
246 247 6.410914 CGAACCTTGTTATGAAATATCAACGC 59.589 38.462 0.00 0.00 39.49 4.84
247 248 5.806286 ACCTTGTTATGAAATATCAACGCG 58.194 37.500 3.53 3.53 39.49 6.01
248 249 5.353123 ACCTTGTTATGAAATATCAACGCGT 59.647 36.000 5.58 5.58 39.49 6.01
249 250 5.676744 CCTTGTTATGAAATATCAACGCGTG 59.323 40.000 14.98 7.52 39.49 5.34
250 251 5.788055 TGTTATGAAATATCAACGCGTGT 57.212 34.783 14.98 4.69 39.49 4.49
251 252 6.171932 TGTTATGAAATATCAACGCGTGTT 57.828 33.333 14.98 8.91 39.49 3.32
252 253 6.604012 TGTTATGAAATATCAACGCGTGTTT 58.396 32.000 14.98 9.45 39.49 2.83
253 254 6.521477 TGTTATGAAATATCAACGCGTGTTTG 59.479 34.615 14.98 8.02 39.49 2.93
254 255 4.733972 TGAAATATCAACGCGTGTTTGA 57.266 36.364 14.98 14.35 35.72 2.69
255 256 5.096954 TGAAATATCAACGCGTGTTTGAA 57.903 34.783 14.98 4.73 35.72 2.69
256 257 4.907010 TGAAATATCAACGCGTGTTTGAAC 59.093 37.500 14.98 2.20 35.72 3.18
257 258 4.742438 AATATCAACGCGTGTTTGAACT 57.258 36.364 14.98 1.28 35.72 3.01
258 259 2.383298 ATCAACGCGTGTTTGAACTG 57.617 45.000 14.98 4.42 35.72 3.16
259 260 1.080298 TCAACGCGTGTTTGAACTGT 58.920 45.000 14.98 0.00 35.72 3.55
260 261 1.465387 TCAACGCGTGTTTGAACTGTT 59.535 42.857 14.98 0.00 35.72 3.16
261 262 2.671888 TCAACGCGTGTTTGAACTGTTA 59.328 40.909 14.98 0.00 35.72 2.41
262 263 3.026349 CAACGCGTGTTTGAACTGTTAG 58.974 45.455 14.98 0.00 35.72 2.34
263 264 1.004292 ACGCGTGTTTGAACTGTTAGC 60.004 47.619 12.93 0.00 0.00 3.09
264 265 1.659211 CGCGTGTTTGAACTGTTAGCC 60.659 52.381 0.00 0.00 0.00 3.93
265 266 1.602377 GCGTGTTTGAACTGTTAGCCT 59.398 47.619 0.00 0.00 0.00 4.58
266 267 2.032924 GCGTGTTTGAACTGTTAGCCTT 59.967 45.455 0.00 0.00 0.00 4.35
267 268 3.249080 GCGTGTTTGAACTGTTAGCCTTA 59.751 43.478 0.00 0.00 0.00 2.69
268 269 4.083484 GCGTGTTTGAACTGTTAGCCTTAT 60.083 41.667 0.00 0.00 0.00 1.73
269 270 5.618561 CGTGTTTGAACTGTTAGCCTTATC 58.381 41.667 0.00 0.00 0.00 1.75
270 271 5.408604 CGTGTTTGAACTGTTAGCCTTATCT 59.591 40.000 0.00 0.00 0.00 1.98
271 272 6.073222 CGTGTTTGAACTGTTAGCCTTATCTT 60.073 38.462 0.00 0.00 0.00 2.40
272 273 7.519970 CGTGTTTGAACTGTTAGCCTTATCTTT 60.520 37.037 0.00 0.00 0.00 2.52
273 274 8.780249 GTGTTTGAACTGTTAGCCTTATCTTTA 58.220 33.333 0.00 0.00 0.00 1.85
274 275 8.780249 TGTTTGAACTGTTAGCCTTATCTTTAC 58.220 33.333 0.00 0.00 0.00 2.01
275 276 7.916914 TTGAACTGTTAGCCTTATCTTTACC 57.083 36.000 0.00 0.00 0.00 2.85
276 277 6.103997 TGAACTGTTAGCCTTATCTTTACCG 58.896 40.000 0.00 0.00 0.00 4.02
277 278 5.927281 ACTGTTAGCCTTATCTTTACCGA 57.073 39.130 0.00 0.00 0.00 4.69
278 279 5.903810 ACTGTTAGCCTTATCTTTACCGAG 58.096 41.667 0.00 0.00 0.00 4.63
279 280 5.655532 ACTGTTAGCCTTATCTTTACCGAGA 59.344 40.000 0.00 0.00 0.00 4.04
280 281 5.899299 TGTTAGCCTTATCTTTACCGAGAC 58.101 41.667 0.00 0.00 0.00 3.36
281 282 3.712091 AGCCTTATCTTTACCGAGACG 57.288 47.619 0.00 0.00 0.00 4.18
282 283 3.022406 AGCCTTATCTTTACCGAGACGT 58.978 45.455 0.00 0.00 0.00 4.34
283 284 3.066481 AGCCTTATCTTTACCGAGACGTC 59.934 47.826 7.70 7.70 0.00 4.34
284 285 3.615614 CCTTATCTTTACCGAGACGTCG 58.384 50.000 10.46 0.00 46.39 5.12
293 294 2.202544 GAGACGTCGAGCCTGCTG 60.203 66.667 10.46 0.00 0.00 4.41
294 295 2.673341 AGACGTCGAGCCTGCTGA 60.673 61.111 10.46 0.00 0.00 4.26
295 296 2.201436 GAGACGTCGAGCCTGCTGAA 62.201 60.000 10.46 0.00 0.00 3.02
296 297 2.049063 ACGTCGAGCCTGCTGAAC 60.049 61.111 0.00 0.00 0.00 3.18
297 298 2.259818 CGTCGAGCCTGCTGAACT 59.740 61.111 0.00 0.00 0.00 3.01
298 299 2.091112 CGTCGAGCCTGCTGAACTG 61.091 63.158 0.00 0.00 0.00 3.16
299 300 1.005630 GTCGAGCCTGCTGAACTGT 60.006 57.895 0.00 0.00 0.00 3.55
300 301 0.601311 GTCGAGCCTGCTGAACTGTT 60.601 55.000 0.00 0.00 0.00 3.16
301 302 0.601046 TCGAGCCTGCTGAACTGTTG 60.601 55.000 0.00 0.00 0.00 3.33
302 303 0.882042 CGAGCCTGCTGAACTGTTGT 60.882 55.000 0.00 0.00 0.00 3.32
303 304 0.871057 GAGCCTGCTGAACTGTTGTC 59.129 55.000 0.00 0.00 0.00 3.18
304 305 0.471617 AGCCTGCTGAACTGTTGTCT 59.528 50.000 0.00 0.00 0.00 3.41
305 306 0.590195 GCCTGCTGAACTGTTGTCTG 59.410 55.000 0.00 0.00 0.00 3.51
306 307 1.959042 CCTGCTGAACTGTTGTCTGT 58.041 50.000 0.00 0.00 0.00 3.41
307 308 1.600957 CCTGCTGAACTGTTGTCTGTG 59.399 52.381 0.00 0.00 0.00 3.66
308 309 2.554142 CTGCTGAACTGTTGTCTGTGA 58.446 47.619 0.00 0.00 0.00 3.58
309 310 3.136763 CTGCTGAACTGTTGTCTGTGAT 58.863 45.455 0.00 0.00 0.00 3.06
310 311 3.544684 TGCTGAACTGTTGTCTGTGATT 58.455 40.909 0.00 0.00 0.00 2.57
311 312 3.947196 TGCTGAACTGTTGTCTGTGATTT 59.053 39.130 0.00 0.00 0.00 2.17
312 313 4.201940 TGCTGAACTGTTGTCTGTGATTTG 60.202 41.667 0.00 0.00 0.00 2.32
313 314 4.201950 GCTGAACTGTTGTCTGTGATTTGT 60.202 41.667 0.00 0.00 0.00 2.83
314 315 5.007626 GCTGAACTGTTGTCTGTGATTTGTA 59.992 40.000 0.00 0.00 0.00 2.41
315 316 6.458206 GCTGAACTGTTGTCTGTGATTTGTAA 60.458 38.462 0.00 0.00 0.00 2.41
316 317 7.384439 TGAACTGTTGTCTGTGATTTGTAAA 57.616 32.000 0.00 0.00 0.00 2.01
317 318 7.247728 TGAACTGTTGTCTGTGATTTGTAAAC 58.752 34.615 0.00 0.00 0.00 2.01
318 319 6.131544 ACTGTTGTCTGTGATTTGTAAACC 57.868 37.500 0.00 0.00 0.00 3.27
319 320 5.885912 ACTGTTGTCTGTGATTTGTAAACCT 59.114 36.000 0.00 0.00 0.00 3.50
320 321 7.051623 ACTGTTGTCTGTGATTTGTAAACCTA 58.948 34.615 0.00 0.00 0.00 3.08
321 322 7.554835 ACTGTTGTCTGTGATTTGTAAACCTAA 59.445 33.333 0.00 0.00 0.00 2.69
322 323 8.282455 TGTTGTCTGTGATTTGTAAACCTAAA 57.718 30.769 0.00 0.00 0.00 1.85
323 324 8.740906 TGTTGTCTGTGATTTGTAAACCTAAAA 58.259 29.630 0.00 0.00 0.00 1.52
324 325 9.016623 GTTGTCTGTGATTTGTAAACCTAAAAC 57.983 33.333 0.00 0.00 0.00 2.43
325 326 8.514330 TGTCTGTGATTTGTAAACCTAAAACT 57.486 30.769 0.00 0.00 0.00 2.66
326 327 8.962679 TGTCTGTGATTTGTAAACCTAAAACTT 58.037 29.630 0.00 0.00 0.00 2.66
336 337 9.685828 TTGTAAACCTAAAACTTATGTGAATGC 57.314 29.630 0.00 0.00 0.00 3.56
337 338 9.073475 TGTAAACCTAAAACTTATGTGAATGCT 57.927 29.630 0.00 0.00 0.00 3.79
338 339 9.341899 GTAAACCTAAAACTTATGTGAATGCTG 57.658 33.333 0.00 0.00 0.00 4.41
339 340 5.954335 ACCTAAAACTTATGTGAATGCTGC 58.046 37.500 0.00 0.00 0.00 5.25
340 341 5.105756 ACCTAAAACTTATGTGAATGCTGCC 60.106 40.000 0.00 0.00 0.00 4.85
341 342 5.126061 CCTAAAACTTATGTGAATGCTGCCT 59.874 40.000 0.00 0.00 0.00 4.75
342 343 5.473066 AAAACTTATGTGAATGCTGCCTT 57.527 34.783 0.00 0.00 0.00 4.35
343 344 4.445452 AACTTATGTGAATGCTGCCTTG 57.555 40.909 0.00 0.00 0.00 3.61
344 345 3.424703 ACTTATGTGAATGCTGCCTTGT 58.575 40.909 0.00 0.00 0.00 3.16
345 346 3.192001 ACTTATGTGAATGCTGCCTTGTG 59.808 43.478 0.00 0.00 0.00 3.33
346 347 0.892755 ATGTGAATGCTGCCTTGTGG 59.107 50.000 0.00 0.00 0.00 4.17
365 366 8.652463 CCTTGTGGCTTTATTAATTTAAAACCG 58.348 33.333 0.00 0.00 32.38 4.44
366 367 8.535690 TTGTGGCTTTATTAATTTAAAACCGG 57.464 30.769 0.00 0.00 32.38 5.28
367 368 7.893658 TGTGGCTTTATTAATTTAAAACCGGA 58.106 30.769 9.46 0.00 32.38 5.14
368 369 7.813627 TGTGGCTTTATTAATTTAAAACCGGAC 59.186 33.333 9.46 0.00 32.38 4.79
369 370 7.008538 GTGGCTTTATTAATTTAAAACCGGACG 59.991 37.037 9.46 0.00 32.38 4.79
370 371 6.020440 GGCTTTATTAATTTAAAACCGGACGC 60.020 38.462 9.46 0.00 0.00 5.19
371 372 6.748658 GCTTTATTAATTTAAAACCGGACGCT 59.251 34.615 9.46 0.00 0.00 5.07
372 373 7.274033 GCTTTATTAATTTAAAACCGGACGCTT 59.726 33.333 9.46 0.00 0.00 4.68
373 374 8.672214 TTTATTAATTTAAAACCGGACGCTTC 57.328 30.769 9.46 0.00 0.00 3.86
374 375 2.886587 ATTTAAAACCGGACGCTTCG 57.113 45.000 9.46 0.00 0.00 3.79
375 376 1.580815 TTTAAAACCGGACGCTTCGT 58.419 45.000 9.46 0.00 45.10 3.85
376 377 0.860533 TTAAAACCGGACGCTTCGTG 59.139 50.000 9.46 0.00 41.37 4.35
377 378 1.559149 TAAAACCGGACGCTTCGTGC 61.559 55.000 9.46 0.00 44.31 5.34
388 389 2.875080 GCTTCGTGCGTCTACATTTT 57.125 45.000 0.00 0.00 0.00 1.82
389 390 3.984018 GCTTCGTGCGTCTACATTTTA 57.016 42.857 0.00 0.00 0.00 1.52
390 391 4.316375 GCTTCGTGCGTCTACATTTTAA 57.684 40.909 0.00 0.00 0.00 1.52
394 395 5.654317 TCGTGCGTCTACATTTTAAACAA 57.346 34.783 0.00 0.00 0.00 2.83
417 418 5.488645 AAAAAGCCTTGCTGATTGTTTTG 57.511 34.783 0.00 0.00 39.62 2.44
418 419 4.405116 AAAGCCTTGCTGATTGTTTTGA 57.595 36.364 0.00 0.00 39.62 2.69
420 421 3.721035 AGCCTTGCTGATTGTTTTGAAC 58.279 40.909 0.00 0.00 37.57 3.18
421 422 2.802247 GCCTTGCTGATTGTTTTGAACC 59.198 45.455 0.00 0.00 0.00 3.62
422 423 3.740764 GCCTTGCTGATTGTTTTGAACCA 60.741 43.478 0.00 0.00 0.00 3.67
423 424 3.803778 CCTTGCTGATTGTTTTGAACCAC 59.196 43.478 0.00 0.00 0.00 4.16
448 450 0.031857 CTGCTCTGCCGTCCATAGAG 59.968 60.000 0.00 0.00 40.63 2.43
464 466 2.979401 AGAGATATGTAGCTGTCGCG 57.021 50.000 0.00 0.00 42.32 5.87
478 480 4.657824 CGCGGTGTTCAGACCCGT 62.658 66.667 0.00 0.00 39.94 5.28
481 483 0.804933 GCGGTGTTCAGACCCGTATC 60.805 60.000 0.00 0.00 39.94 2.24
576 594 4.923710 CGCGTCGCCCATCATCGA 62.924 66.667 12.44 0.00 0.00 3.59
577 595 2.356313 GCGTCGCCCATCATCGAT 60.356 61.111 5.75 0.00 37.06 3.59
578 596 2.375766 GCGTCGCCCATCATCGATC 61.376 63.158 5.75 0.00 37.06 3.69
579 597 2.082943 CGTCGCCCATCATCGATCG 61.083 63.158 9.36 9.36 37.06 3.69
643 665 1.333081 GCGCAACAACCAGCAAAATTG 60.333 47.619 0.30 0.00 0.00 2.32
696 718 1.017387 GCTAGAAAATGCGGGGTGAG 58.983 55.000 0.00 0.00 0.00 3.51
697 719 1.017387 CTAGAAAATGCGGGGTGAGC 58.983 55.000 0.00 0.00 0.00 4.26
698 720 0.742990 TAGAAAATGCGGGGTGAGCG 60.743 55.000 0.00 0.00 37.44 5.03
700 722 3.860930 AAAATGCGGGGTGAGCGGT 62.861 57.895 0.00 0.00 37.44 5.68
701 723 4.778143 AATGCGGGGTGAGCGGTC 62.778 66.667 7.89 7.89 37.44 4.79
728 750 2.352805 CCACTTGCACCCCTCCTC 59.647 66.667 0.00 0.00 0.00 3.71
729 751 2.352805 CACTTGCACCCCTCCTCC 59.647 66.667 0.00 0.00 0.00 4.30
730 752 2.121963 ACTTGCACCCCTCCTCCA 60.122 61.111 0.00 0.00 0.00 3.86
731 753 1.542375 ACTTGCACCCCTCCTCCAT 60.542 57.895 0.00 0.00 0.00 3.41
789 811 1.820581 TGCGATGCACCTACCTACC 59.179 57.895 0.00 0.00 31.71 3.18
790 812 0.686441 TGCGATGCACCTACCTACCT 60.686 55.000 0.00 0.00 31.71 3.08
791 813 0.464452 GCGATGCACCTACCTACCTT 59.536 55.000 0.00 0.00 0.00 3.50
792 814 1.684983 GCGATGCACCTACCTACCTTA 59.315 52.381 0.00 0.00 0.00 2.69
793 815 2.545322 GCGATGCACCTACCTACCTTAC 60.545 54.545 0.00 0.00 0.00 2.34
794 816 2.957006 CGATGCACCTACCTACCTTACT 59.043 50.000 0.00 0.00 0.00 2.24
795 817 3.243434 CGATGCACCTACCTACCTTACTG 60.243 52.174 0.00 0.00 0.00 2.74
796 818 2.463752 TGCACCTACCTACCTTACTGG 58.536 52.381 0.00 0.00 42.93 4.00
825 854 2.168936 CCTATTAGGTACCAACGGCACA 59.831 50.000 15.94 0.00 0.00 4.57
826 855 2.103537 ATTAGGTACCAACGGCACAC 57.896 50.000 15.94 0.00 0.00 3.82
876 923 1.741032 GCGCTCTTGCTTGCTCTCT 60.741 57.895 0.00 0.00 36.97 3.10
877 924 1.694955 GCGCTCTTGCTTGCTCTCTC 61.695 60.000 0.00 0.00 36.97 3.20
878 925 0.108709 CGCTCTTGCTTGCTCTCTCT 60.109 55.000 0.00 0.00 36.97 3.10
879 926 1.643880 GCTCTTGCTTGCTCTCTCTC 58.356 55.000 0.00 0.00 36.03 3.20
880 927 1.205417 GCTCTTGCTTGCTCTCTCTCT 59.795 52.381 0.00 0.00 36.03 3.10
881 928 2.736400 GCTCTTGCTTGCTCTCTCTCTC 60.736 54.545 0.00 0.00 36.03 3.20
882 929 2.756760 CTCTTGCTTGCTCTCTCTCTCT 59.243 50.000 0.00 0.00 0.00 3.10
883 930 2.754552 TCTTGCTTGCTCTCTCTCTCTC 59.245 50.000 0.00 0.00 0.00 3.20
884 931 2.512692 TGCTTGCTCTCTCTCTCTCT 57.487 50.000 0.00 0.00 0.00 3.10
885 932 2.368439 TGCTTGCTCTCTCTCTCTCTC 58.632 52.381 0.00 0.00 0.00 3.20
886 933 2.025981 TGCTTGCTCTCTCTCTCTCTCT 60.026 50.000 0.00 0.00 0.00 3.10
887 934 2.615912 GCTTGCTCTCTCTCTCTCTCTC 59.384 54.545 0.00 0.00 0.00 3.20
888 935 3.683847 GCTTGCTCTCTCTCTCTCTCTCT 60.684 52.174 0.00 0.00 0.00 3.10
889 936 3.827008 TGCTCTCTCTCTCTCTCTCTC 57.173 52.381 0.00 0.00 0.00 3.20
944 991 2.698763 GCAGCAGCAAGAGGAAGGC 61.699 63.158 0.00 0.00 41.58 4.35
945 992 1.002379 CAGCAGCAAGAGGAAGGCT 60.002 57.895 0.00 0.00 38.70 4.58
996 1055 4.884744 CGATAGAGAGAGACAAAGGGAGAA 59.115 45.833 0.00 0.00 39.76 2.87
1155 1247 1.137675 TCTCGACGTGGTAGCTAGCTA 59.862 52.381 20.67 20.67 0.00 3.32
1156 1248 1.527736 CTCGACGTGGTAGCTAGCTAG 59.472 57.143 24.78 16.84 0.00 3.42
1170 1262 0.462759 AGCTAGCTTGACCGCATTCC 60.463 55.000 12.68 0.00 0.00 3.01
1172 1264 1.293924 CTAGCTTGACCGCATTCCTG 58.706 55.000 0.00 0.00 0.00 3.86
1382 1478 5.357257 CCGAGGTAAATATCAATATCCGGG 58.643 45.833 0.00 0.00 0.00 5.73
1400 1535 2.767505 GGGATAGCCACGGAAATACTG 58.232 52.381 0.00 0.00 35.15 2.74
1412 1547 2.795470 GGAAATACTGCTGCTAGTACGC 59.205 50.000 12.07 0.00 36.09 4.42
1495 1633 1.324740 GCATCATGAGGGCCTGCAAA 61.325 55.000 12.95 2.47 33.13 3.68
1649 1787 0.900182 ATGGGTGAGACGACAGCAGA 60.900 55.000 0.00 0.00 39.61 4.26
1650 1788 1.214062 GGGTGAGACGACAGCAGAG 59.786 63.158 0.00 0.00 39.61 3.35
1651 1789 1.244697 GGGTGAGACGACAGCAGAGA 61.245 60.000 0.00 0.00 39.61 3.10
1652 1790 0.170116 GGTGAGACGACAGCAGAGAG 59.830 60.000 0.00 0.00 38.05 3.20
1737 1893 3.254060 CAGATGTACTTCGTGTCCAAGG 58.746 50.000 3.32 0.00 0.00 3.61
1955 2111 2.031919 TGCGACGCCATGACCTTT 59.968 55.556 18.69 0.00 0.00 3.11
2058 2214 1.611474 GGACAGGTTCCCCGAGTACC 61.611 65.000 0.00 0.00 38.70 3.34
2076 2232 2.877691 GCATCCCGCACAAGTTCC 59.122 61.111 0.00 0.00 41.79 3.62
2078 2234 2.046314 ATCCCGCACAAGTTCCCG 60.046 61.111 0.00 0.00 0.00 5.14
2119 2275 0.835941 CCCATCCACTTCTCCTCCAG 59.164 60.000 0.00 0.00 0.00 3.86
2213 2369 0.990818 GGGAGAAGGGCCTCATTCCT 60.991 60.000 22.63 10.27 34.54 3.36
2310 2466 2.806745 GCCGAGACATAATAAGCCAGCA 60.807 50.000 0.00 0.00 0.00 4.41
2311 2467 2.802816 CCGAGACATAATAAGCCAGCAC 59.197 50.000 0.00 0.00 0.00 4.40
2312 2468 3.493350 CCGAGACATAATAAGCCAGCACT 60.493 47.826 0.00 0.00 0.00 4.40
2371 2527 4.625800 GGCAGAGCCCTGTAACTG 57.374 61.111 0.00 0.00 44.06 3.16
2522 2679 2.096819 TGAAGTGTCGCAGTTTTGAACC 59.903 45.455 2.24 0.00 0.00 3.62
2538 2699 1.683385 GAACCAGGCTTCAAAACTGCT 59.317 47.619 0.00 0.00 0.00 4.24
2556 2717 9.461312 AAAACTGCTGACACTTATTATTATGGA 57.539 29.630 0.00 0.00 0.00 3.41
2559 2720 7.600375 ACTGCTGACACTTATTATTATGGATCG 59.400 37.037 0.00 0.00 0.00 3.69
2565 2726 7.386851 ACACTTATTATTATGGATCGGAGGTG 58.613 38.462 0.00 0.00 0.00 4.00
2673 2834 9.699410 TTAATCTGGTAGAATGATGGTCAAAAT 57.301 29.630 0.00 0.00 0.00 1.82
2703 2864 5.765182 CCCCAGAACCACATATTTACATCTC 59.235 44.000 0.00 0.00 0.00 2.75
2705 2866 6.708054 CCCAGAACCACATATTTACATCTCTC 59.292 42.308 0.00 0.00 0.00 3.20
2777 2938 6.006449 TCTCCCAGGAAAAGAAAAGAATGAG 58.994 40.000 0.00 0.00 0.00 2.90
3051 3212 7.015292 ACCTTCTCACAGATGTACTTTTGTCTA 59.985 37.037 2.33 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.592607 TGATAGTAATTTTGTTCCTCACGGTC 59.407 38.462 0.00 0.00 0.00 4.79
1 2 6.469410 TGATAGTAATTTTGTTCCTCACGGT 58.531 36.000 0.00 0.00 0.00 4.83
2 3 6.978343 TGATAGTAATTTTGTTCCTCACGG 57.022 37.500 0.00 0.00 0.00 4.94
3 4 6.961554 GCTTGATAGTAATTTTGTTCCTCACG 59.038 38.462 0.00 0.00 0.00 4.35
4 5 7.750903 GTGCTTGATAGTAATTTTGTTCCTCAC 59.249 37.037 0.00 0.00 0.00 3.51
5 6 7.446931 TGTGCTTGATAGTAATTTTGTTCCTCA 59.553 33.333 0.00 0.00 0.00 3.86
6 7 7.816640 TGTGCTTGATAGTAATTTTGTTCCTC 58.183 34.615 0.00 0.00 0.00 3.71
7 8 7.759489 TGTGCTTGATAGTAATTTTGTTCCT 57.241 32.000 0.00 0.00 0.00 3.36
8 9 8.082242 ACTTGTGCTTGATAGTAATTTTGTTCC 58.918 33.333 0.00 0.00 0.00 3.62
9 10 9.463443 AACTTGTGCTTGATAGTAATTTTGTTC 57.537 29.630 0.00 0.00 0.00 3.18
10 11 9.816354 AAACTTGTGCTTGATAGTAATTTTGTT 57.184 25.926 0.00 0.00 0.00 2.83
11 12 9.463443 GAAACTTGTGCTTGATAGTAATTTTGT 57.537 29.630 0.00 0.00 0.00 2.83
12 13 8.915654 GGAAACTTGTGCTTGATAGTAATTTTG 58.084 33.333 0.00 0.00 0.00 2.44
13 14 8.860088 AGGAAACTTGTGCTTGATAGTAATTTT 58.140 29.630 0.00 0.00 37.44 1.82
14 15 8.299570 CAGGAAACTTGTGCTTGATAGTAATTT 58.700 33.333 0.00 0.00 40.21 1.82
15 16 7.575720 GCAGGAAACTTGTGCTTGATAGTAATT 60.576 37.037 0.00 0.00 40.21 1.40
16 17 6.127897 GCAGGAAACTTGTGCTTGATAGTAAT 60.128 38.462 0.00 0.00 40.21 1.89
17 18 5.181245 GCAGGAAACTTGTGCTTGATAGTAA 59.819 40.000 0.00 0.00 40.21 2.24
18 19 4.695455 GCAGGAAACTTGTGCTTGATAGTA 59.305 41.667 0.00 0.00 40.21 1.82
19 20 3.503748 GCAGGAAACTTGTGCTTGATAGT 59.496 43.478 0.00 0.00 40.21 2.12
20 21 3.755378 AGCAGGAAACTTGTGCTTGATAG 59.245 43.478 0.00 0.00 45.31 2.08
21 22 3.754965 AGCAGGAAACTTGTGCTTGATA 58.245 40.909 0.00 0.00 45.31 2.15
22 23 2.590821 AGCAGGAAACTTGTGCTTGAT 58.409 42.857 0.00 0.00 45.31 2.57
23 24 2.057137 AGCAGGAAACTTGTGCTTGA 57.943 45.000 0.00 0.00 45.31 3.02
27 28 0.312102 GGTGAGCAGGAAACTTGTGC 59.688 55.000 0.00 0.00 40.21 4.57
28 29 0.954452 GGGTGAGCAGGAAACTTGTG 59.046 55.000 0.00 0.00 40.21 3.33
29 30 0.178990 GGGGTGAGCAGGAAACTTGT 60.179 55.000 0.00 0.00 40.21 3.16
30 31 1.237285 CGGGGTGAGCAGGAAACTTG 61.237 60.000 0.00 0.00 40.21 3.16
31 32 1.073199 CGGGGTGAGCAGGAAACTT 59.927 57.895 0.00 0.00 40.21 2.66
32 33 1.705997 AACGGGGTGAGCAGGAAACT 61.706 55.000 0.00 0.00 46.44 2.66
33 34 1.228154 AACGGGGTGAGCAGGAAAC 60.228 57.895 0.00 0.00 0.00 2.78
34 35 1.228124 CAACGGGGTGAGCAGGAAA 60.228 57.895 0.00 0.00 0.00 3.13
35 36 2.111999 CTCAACGGGGTGAGCAGGAA 62.112 60.000 0.03 0.00 38.74 3.36
36 37 2.525629 TCAACGGGGTGAGCAGGA 60.526 61.111 0.00 0.00 0.00 3.86
37 38 1.903877 ATCTCAACGGGGTGAGCAGG 61.904 60.000 8.86 0.00 44.01 4.85
38 39 0.036010 AATCTCAACGGGGTGAGCAG 60.036 55.000 8.86 0.00 44.01 4.24
39 40 0.036388 GAATCTCAACGGGGTGAGCA 60.036 55.000 8.86 0.00 44.01 4.26
40 41 0.250513 AGAATCTCAACGGGGTGAGC 59.749 55.000 8.86 0.00 44.01 4.26
41 42 2.770164 AAGAATCTCAACGGGGTGAG 57.230 50.000 7.41 7.41 45.44 3.51
42 43 3.181449 TGAAAAGAATCTCAACGGGGTGA 60.181 43.478 0.00 0.00 0.00 4.02
43 44 3.146066 TGAAAAGAATCTCAACGGGGTG 58.854 45.455 0.00 0.00 0.00 4.61
44 45 3.502123 TGAAAAGAATCTCAACGGGGT 57.498 42.857 0.00 0.00 0.00 4.95
45 46 4.846779 TTTGAAAAGAATCTCAACGGGG 57.153 40.909 0.00 0.00 31.41 5.73
46 47 5.772521 ACATTTGAAAAGAATCTCAACGGG 58.227 37.500 0.00 0.00 31.41 5.28
47 48 6.437928 TGACATTTGAAAAGAATCTCAACGG 58.562 36.000 0.00 0.00 31.41 4.44
48 49 8.019669 AGATGACATTTGAAAAGAATCTCAACG 58.980 33.333 0.00 0.00 31.41 4.10
49 50 9.688592 AAGATGACATTTGAAAAGAATCTCAAC 57.311 29.630 0.00 0.00 31.41 3.18
57 58 9.567776 TGTAGGTAAAGATGACATTTGAAAAGA 57.432 29.630 0.00 0.00 0.00 2.52
58 59 9.831737 CTGTAGGTAAAGATGACATTTGAAAAG 57.168 33.333 0.00 0.00 0.00 2.27
59 60 8.792633 CCTGTAGGTAAAGATGACATTTGAAAA 58.207 33.333 0.00 0.00 0.00 2.29
60 61 7.094377 GCCTGTAGGTAAAGATGACATTTGAAA 60.094 37.037 0.00 0.00 37.57 2.69
61 62 6.374333 GCCTGTAGGTAAAGATGACATTTGAA 59.626 38.462 0.00 0.00 37.57 2.69
62 63 5.880332 GCCTGTAGGTAAAGATGACATTTGA 59.120 40.000 0.00 0.00 37.57 2.69
63 64 5.882557 AGCCTGTAGGTAAAGATGACATTTG 59.117 40.000 0.00 0.00 37.57 2.32
64 65 6.067217 AGCCTGTAGGTAAAGATGACATTT 57.933 37.500 0.00 0.00 37.57 2.32
65 66 5.700402 AGCCTGTAGGTAAAGATGACATT 57.300 39.130 0.00 0.00 37.57 2.71
66 67 5.431765 CAAGCCTGTAGGTAAAGATGACAT 58.568 41.667 0.00 0.00 37.57 3.06
67 68 4.323485 CCAAGCCTGTAGGTAAAGATGACA 60.323 45.833 0.00 0.00 37.57 3.58
68 69 4.192317 CCAAGCCTGTAGGTAAAGATGAC 58.808 47.826 0.00 0.00 37.57 3.06
69 70 3.199946 CCCAAGCCTGTAGGTAAAGATGA 59.800 47.826 0.00 0.00 37.57 2.92
70 71 3.545703 CCCAAGCCTGTAGGTAAAGATG 58.454 50.000 0.00 0.00 37.57 2.90
71 72 2.092375 GCCCAAGCCTGTAGGTAAAGAT 60.092 50.000 0.00 0.00 37.57 2.40
72 73 1.280998 GCCCAAGCCTGTAGGTAAAGA 59.719 52.381 0.00 0.00 37.57 2.52
73 74 1.751437 GCCCAAGCCTGTAGGTAAAG 58.249 55.000 0.00 0.00 37.57 1.85
74 75 0.035820 CGCCCAAGCCTGTAGGTAAA 60.036 55.000 0.00 0.00 37.57 2.01
75 76 1.600107 CGCCCAAGCCTGTAGGTAA 59.400 57.895 0.00 0.00 37.57 2.85
76 77 3.026431 GCGCCCAAGCCTGTAGGTA 62.026 63.158 0.00 0.00 37.57 3.08
77 78 4.410400 GCGCCCAAGCCTGTAGGT 62.410 66.667 0.00 0.00 37.57 3.08
86 87 4.757355 TCCCCAATGGCGCCCAAG 62.757 66.667 26.77 13.27 36.95 3.61
87 88 4.307502 TTCCCCAATGGCGCCCAA 62.308 61.111 26.77 6.41 36.95 4.12
88 89 4.757355 CTTCCCCAATGGCGCCCA 62.757 66.667 26.77 12.96 38.19 5.36
91 92 2.724273 ATTGCTTCCCCAATGGCGC 61.724 57.895 0.00 0.00 34.32 6.53
92 93 1.142314 CATTGCTTCCCCAATGGCG 59.858 57.895 0.00 0.00 45.15 5.69
96 97 2.307496 TGTCACATTGCTTCCCCAAT 57.693 45.000 0.00 0.00 35.90 3.16
97 98 1.962807 CTTGTCACATTGCTTCCCCAA 59.037 47.619 0.00 0.00 0.00 4.12
98 99 1.619654 CTTGTCACATTGCTTCCCCA 58.380 50.000 0.00 0.00 0.00 4.96
99 100 0.890683 CCTTGTCACATTGCTTCCCC 59.109 55.000 0.00 0.00 0.00 4.81
100 101 1.909700 TCCTTGTCACATTGCTTCCC 58.090 50.000 0.00 0.00 0.00 3.97
101 102 2.096496 CGATCCTTGTCACATTGCTTCC 59.904 50.000 0.00 0.00 0.00 3.46
102 103 2.476854 GCGATCCTTGTCACATTGCTTC 60.477 50.000 0.00 0.00 0.00 3.86
103 104 1.470098 GCGATCCTTGTCACATTGCTT 59.530 47.619 0.00 0.00 0.00 3.91
104 105 1.089920 GCGATCCTTGTCACATTGCT 58.910 50.000 0.00 0.00 0.00 3.91
105 106 0.804364 TGCGATCCTTGTCACATTGC 59.196 50.000 0.00 0.00 0.00 3.56
106 107 2.679336 TCATGCGATCCTTGTCACATTG 59.321 45.455 0.00 0.00 0.00 2.82
107 108 2.989909 TCATGCGATCCTTGTCACATT 58.010 42.857 0.00 0.00 0.00 2.71
108 109 2.696989 TCATGCGATCCTTGTCACAT 57.303 45.000 0.00 0.00 0.00 3.21
109 110 2.554142 GATCATGCGATCCTTGTCACA 58.446 47.619 0.00 0.00 42.03 3.58
110 111 1.524355 CGATCATGCGATCCTTGTCAC 59.476 52.381 0.00 0.00 44.55 3.67
111 112 1.408702 TCGATCATGCGATCCTTGTCA 59.591 47.619 0.00 0.00 44.55 3.58
112 113 2.057316 CTCGATCATGCGATCCTTGTC 58.943 52.381 0.00 0.00 44.55 3.18
113 114 1.683385 TCTCGATCATGCGATCCTTGT 59.317 47.619 0.00 0.00 44.55 3.16
114 115 2.057316 GTCTCGATCATGCGATCCTTG 58.943 52.381 0.00 0.00 44.55 3.61
115 116 1.335415 CGTCTCGATCATGCGATCCTT 60.335 52.381 0.00 0.00 44.55 3.36
116 117 0.239613 CGTCTCGATCATGCGATCCT 59.760 55.000 0.00 0.00 44.55 3.24
117 118 0.238553 TCGTCTCGATCATGCGATCC 59.761 55.000 0.00 0.00 44.55 3.36
118 119 1.910175 CATCGTCTCGATCATGCGATC 59.090 52.381 1.58 0.00 45.19 3.69
119 120 1.402062 CCATCGTCTCGATCATGCGAT 60.402 52.381 1.58 0.00 45.19 4.58
120 121 0.040067 CCATCGTCTCGATCATGCGA 60.040 55.000 1.58 0.00 45.19 5.10
121 122 0.040067 TCCATCGTCTCGATCATGCG 60.040 55.000 1.58 0.00 45.19 4.73
122 123 1.695813 CTCCATCGTCTCGATCATGC 58.304 55.000 1.58 0.00 45.19 4.06
123 124 1.000938 TGCTCCATCGTCTCGATCATG 60.001 52.381 1.58 0.00 45.19 3.07
124 125 1.269174 CTGCTCCATCGTCTCGATCAT 59.731 52.381 1.58 0.00 45.19 2.45
125 126 0.665298 CTGCTCCATCGTCTCGATCA 59.335 55.000 1.58 0.00 45.19 2.92
126 127 0.039617 CCTGCTCCATCGTCTCGATC 60.040 60.000 1.58 0.00 45.19 3.69
128 129 1.377366 GACCTGCTCCATCGTCTCGA 61.377 60.000 0.00 0.00 41.13 4.04
129 130 1.064946 GACCTGCTCCATCGTCTCG 59.935 63.158 0.00 0.00 0.00 4.04
130 131 1.323271 TGGACCTGCTCCATCGTCTC 61.323 60.000 0.00 0.00 44.99 3.36
131 132 1.305297 TGGACCTGCTCCATCGTCT 60.305 57.895 0.00 0.00 44.99 4.18
132 133 3.298958 TGGACCTGCTCCATCGTC 58.701 61.111 0.00 0.00 44.99 4.20
138 139 2.046507 CACAGCTGGACCTGCTCC 60.047 66.667 21.99 0.00 36.55 4.70
139 140 2.745492 GCACAGCTGGACCTGCTC 60.745 66.667 21.99 8.64 36.55 4.26
140 141 2.903635 ATGCACAGCTGGACCTGCT 61.904 57.895 22.84 19.43 39.15 4.24
141 142 2.360852 ATGCACAGCTGGACCTGC 60.361 61.111 19.93 18.59 36.29 4.85
142 143 1.002990 TCATGCACAGCTGGACCTG 60.003 57.895 19.93 12.31 38.78 4.00
143 144 1.002868 GTCATGCACAGCTGGACCT 60.003 57.895 19.93 0.00 0.00 3.85
144 145 2.393768 CGTCATGCACAGCTGGACC 61.394 63.158 19.93 6.12 32.06 4.46
145 146 1.357258 CTCGTCATGCACAGCTGGAC 61.357 60.000 19.93 13.77 0.00 4.02
146 147 1.079612 CTCGTCATGCACAGCTGGA 60.080 57.895 19.93 1.59 0.00 3.86
147 148 1.079612 TCTCGTCATGCACAGCTGG 60.080 57.895 19.93 8.27 0.00 4.85
148 149 1.694018 GCTCTCGTCATGCACAGCTG 61.694 60.000 13.48 13.48 0.00 4.24
149 150 1.447489 GCTCTCGTCATGCACAGCT 60.447 57.895 0.00 0.00 0.00 4.24
150 151 1.293963 TTGCTCTCGTCATGCACAGC 61.294 55.000 0.00 0.00 36.37 4.40
151 152 0.720027 CTTGCTCTCGTCATGCACAG 59.280 55.000 0.00 0.00 36.37 3.66
152 153 0.318120 TCTTGCTCTCGTCATGCACA 59.682 50.000 0.00 0.00 36.37 4.57
153 154 0.718343 GTCTTGCTCTCGTCATGCAC 59.282 55.000 0.00 0.00 36.37 4.57
154 155 0.605083 AGTCTTGCTCTCGTCATGCA 59.395 50.000 0.00 0.00 34.69 3.96
155 156 1.658095 GAAGTCTTGCTCTCGTCATGC 59.342 52.381 0.00 0.00 0.00 4.06
156 157 2.951726 TGAAGTCTTGCTCTCGTCATG 58.048 47.619 0.00 0.00 0.00 3.07
157 158 3.256879 TCTTGAAGTCTTGCTCTCGTCAT 59.743 43.478 0.00 0.00 0.00 3.06
158 159 2.623416 TCTTGAAGTCTTGCTCTCGTCA 59.377 45.455 0.00 0.00 0.00 4.35
159 160 3.290308 TCTTGAAGTCTTGCTCTCGTC 57.710 47.619 0.00 0.00 0.00 4.20
160 161 3.181475 TGTTCTTGAAGTCTTGCTCTCGT 60.181 43.478 0.00 0.00 0.00 4.18
161 162 3.384668 TGTTCTTGAAGTCTTGCTCTCG 58.615 45.455 0.00 0.00 0.00 4.04
162 163 4.572389 TGTTGTTCTTGAAGTCTTGCTCTC 59.428 41.667 0.00 0.00 0.00 3.20
163 164 4.517285 TGTTGTTCTTGAAGTCTTGCTCT 58.483 39.130 0.00 0.00 0.00 4.09
164 165 4.882671 TGTTGTTCTTGAAGTCTTGCTC 57.117 40.909 0.00 0.00 0.00 4.26
165 166 4.439289 GCTTGTTGTTCTTGAAGTCTTGCT 60.439 41.667 0.00 0.00 0.00 3.91
166 167 3.793492 GCTTGTTGTTCTTGAAGTCTTGC 59.207 43.478 0.00 0.00 0.00 4.01
167 168 5.240713 AGCTTGTTGTTCTTGAAGTCTTG 57.759 39.130 0.00 0.00 0.00 3.02
168 169 5.415701 TCAAGCTTGTTGTTCTTGAAGTCTT 59.584 36.000 25.19 0.00 42.00 3.01
169 170 4.943705 TCAAGCTTGTTGTTCTTGAAGTCT 59.056 37.500 25.19 0.00 42.00 3.24
170 171 5.235305 TCAAGCTTGTTGTTCTTGAAGTC 57.765 39.130 25.19 0.00 42.00 3.01
171 172 4.439289 GCTCAAGCTTGTTGTTCTTGAAGT 60.439 41.667 25.19 0.00 43.60 3.01
172 173 4.040376 GCTCAAGCTTGTTGTTCTTGAAG 58.960 43.478 25.19 12.39 43.60 3.02
173 174 3.181487 GGCTCAAGCTTGTTGTTCTTGAA 60.181 43.478 25.19 1.75 43.60 2.69
174 175 2.358898 GGCTCAAGCTTGTTGTTCTTGA 59.641 45.455 25.19 2.51 42.51 3.02
175 176 2.360165 AGGCTCAAGCTTGTTGTTCTTG 59.640 45.455 25.19 8.26 41.70 3.02
176 177 2.659428 AGGCTCAAGCTTGTTGTTCTT 58.341 42.857 25.19 5.81 41.70 2.52
177 178 2.355010 AGGCTCAAGCTTGTTGTTCT 57.645 45.000 25.19 16.29 41.70 3.01
178 179 3.443099 AAAGGCTCAAGCTTGTTGTTC 57.557 42.857 25.19 14.72 41.70 3.18
179 180 3.524541 CAAAAGGCTCAAGCTTGTTGTT 58.475 40.909 25.19 12.21 39.60 2.83
180 181 2.739609 GCAAAAGGCTCAAGCTTGTTGT 60.740 45.455 25.19 5.40 44.36 3.32
181 182 1.862827 GCAAAAGGCTCAAGCTTGTTG 59.137 47.619 25.19 20.34 45.03 3.33
182 183 1.536709 CGCAAAAGGCTCAAGCTTGTT 60.537 47.619 25.19 10.12 41.67 2.83
183 184 0.031178 CGCAAAAGGCTCAAGCTTGT 59.969 50.000 25.19 3.76 41.67 3.16
184 185 0.031178 ACGCAAAAGGCTCAAGCTTG 59.969 50.000 20.81 20.81 41.67 4.01
185 186 0.746659 AACGCAAAAGGCTCAAGCTT 59.253 45.000 0.00 0.00 41.67 3.74
186 187 0.746659 AAACGCAAAAGGCTCAAGCT 59.253 45.000 1.46 0.00 41.67 3.74
187 188 2.287608 ACTAAACGCAAAAGGCTCAAGC 60.288 45.455 0.00 0.00 41.67 4.01
188 189 3.626028 ACTAAACGCAAAAGGCTCAAG 57.374 42.857 0.00 0.00 41.67 3.02
189 190 4.379339 AAACTAAACGCAAAAGGCTCAA 57.621 36.364 0.00 0.00 41.67 3.02
190 191 5.699097 ATAAACTAAACGCAAAAGGCTCA 57.301 34.783 0.00 0.00 41.67 4.26
191 192 5.344933 CCAATAAACTAAACGCAAAAGGCTC 59.655 40.000 0.00 0.00 41.67 4.70
192 193 5.221362 ACCAATAAACTAAACGCAAAAGGCT 60.221 36.000 0.00 0.00 41.67 4.58
193 194 4.986034 ACCAATAAACTAAACGCAAAAGGC 59.014 37.500 0.00 0.00 39.90 4.35
194 195 5.980715 ACACCAATAAACTAAACGCAAAAGG 59.019 36.000 0.00 0.00 0.00 3.11
195 196 6.129561 CGACACCAATAAACTAAACGCAAAAG 60.130 38.462 0.00 0.00 0.00 2.27
196 197 5.681982 CGACACCAATAAACTAAACGCAAAA 59.318 36.000 0.00 0.00 0.00 2.44
197 198 5.206299 CGACACCAATAAACTAAACGCAAA 58.794 37.500 0.00 0.00 0.00 3.68
198 199 4.774586 CGACACCAATAAACTAAACGCAA 58.225 39.130 0.00 0.00 0.00 4.85
199 200 3.364167 GCGACACCAATAAACTAAACGCA 60.364 43.478 0.00 0.00 41.50 5.24
200 201 3.158268 GCGACACCAATAAACTAAACGC 58.842 45.455 0.00 0.00 36.06 4.84
201 202 3.121611 TCGCGACACCAATAAACTAAACG 59.878 43.478 3.71 0.00 0.00 3.60
202 203 4.650545 TCGCGACACCAATAAACTAAAC 57.349 40.909 3.71 0.00 0.00 2.01
203 204 4.083908 GGTTCGCGACACCAATAAACTAAA 60.084 41.667 25.60 0.00 34.04 1.85
204 205 3.432933 GGTTCGCGACACCAATAAACTAA 59.567 43.478 25.60 0.07 34.04 2.24
205 206 2.995258 GGTTCGCGACACCAATAAACTA 59.005 45.455 25.60 0.48 34.04 2.24
206 207 1.802365 GGTTCGCGACACCAATAAACT 59.198 47.619 25.60 0.00 34.04 2.66
207 208 1.802365 AGGTTCGCGACACCAATAAAC 59.198 47.619 29.35 15.51 36.67 2.01
208 209 2.172851 AGGTTCGCGACACCAATAAA 57.827 45.000 29.35 5.40 36.67 1.40
209 210 1.801771 CAAGGTTCGCGACACCAATAA 59.198 47.619 29.35 6.07 36.67 1.40
210 211 1.270412 ACAAGGTTCGCGACACCAATA 60.270 47.619 29.35 6.75 36.67 1.90
211 212 0.534203 ACAAGGTTCGCGACACCAAT 60.534 50.000 29.35 20.06 36.67 3.16
212 213 0.745128 AACAAGGTTCGCGACACCAA 60.745 50.000 29.35 8.11 36.67 3.67
213 214 0.104487 TAACAAGGTTCGCGACACCA 59.896 50.000 29.35 14.46 36.67 4.17
214 215 1.127951 CATAACAAGGTTCGCGACACC 59.872 52.381 24.12 24.12 34.06 4.16
215 216 2.063266 TCATAACAAGGTTCGCGACAC 58.937 47.619 9.15 10.65 0.00 3.67
216 217 2.442212 TCATAACAAGGTTCGCGACA 57.558 45.000 9.15 0.00 0.00 4.35
217 218 3.799137 TTTCATAACAAGGTTCGCGAC 57.201 42.857 9.15 3.93 0.00 5.19
218 219 5.813157 TGATATTTCATAACAAGGTTCGCGA 59.187 36.000 3.71 3.71 0.00 5.87
219 220 6.043327 TGATATTTCATAACAAGGTTCGCG 57.957 37.500 0.00 0.00 0.00 5.87
220 221 6.410914 CGTTGATATTTCATAACAAGGTTCGC 59.589 38.462 0.00 0.00 32.36 4.70
221 222 6.410914 GCGTTGATATTTCATAACAAGGTTCG 59.589 38.462 0.00 0.00 36.44 3.95
222 223 6.410914 CGCGTTGATATTTCATAACAAGGTTC 59.589 38.462 0.00 0.00 36.44 3.62
223 224 6.128117 ACGCGTTGATATTTCATAACAAGGTT 60.128 34.615 5.58 0.00 36.44 3.50
224 225 5.353123 ACGCGTTGATATTTCATAACAAGGT 59.647 36.000 5.58 0.00 36.44 3.50
225 226 5.676744 CACGCGTTGATATTTCATAACAAGG 59.323 40.000 10.22 0.00 36.84 3.61
226 227 6.247903 ACACGCGTTGATATTTCATAACAAG 58.752 36.000 10.22 0.00 29.75 3.16
227 228 6.171932 ACACGCGTTGATATTTCATAACAA 57.828 33.333 10.22 0.00 0.00 2.83
228 229 5.788055 ACACGCGTTGATATTTCATAACA 57.212 34.783 10.22 0.00 0.00 2.41
229 230 6.739100 TCAAACACGCGTTGATATTTCATAAC 59.261 34.615 10.22 0.00 34.86 1.89
230 231 6.832804 TCAAACACGCGTTGATATTTCATAA 58.167 32.000 10.22 0.00 34.86 1.90
231 232 6.410243 TCAAACACGCGTTGATATTTCATA 57.590 33.333 10.22 0.00 34.86 2.15
232 233 5.289917 TCAAACACGCGTTGATATTTCAT 57.710 34.783 10.22 0.00 34.86 2.57
233 234 4.733972 TCAAACACGCGTTGATATTTCA 57.266 36.364 10.22 0.00 34.86 2.69
234 235 5.058008 CAGTTCAAACACGCGTTGATATTTC 59.942 40.000 10.22 0.00 34.86 2.17
235 236 4.909305 CAGTTCAAACACGCGTTGATATTT 59.091 37.500 10.22 2.51 34.86 1.40
236 237 4.024387 ACAGTTCAAACACGCGTTGATATT 60.024 37.500 10.22 0.00 34.86 1.28
237 238 3.496884 ACAGTTCAAACACGCGTTGATAT 59.503 39.130 10.22 0.00 34.86 1.63
238 239 2.867368 ACAGTTCAAACACGCGTTGATA 59.133 40.909 10.22 0.00 34.86 2.15
239 240 1.668751 ACAGTTCAAACACGCGTTGAT 59.331 42.857 10.22 0.00 34.86 2.57
240 241 1.080298 ACAGTTCAAACACGCGTTGA 58.920 45.000 10.22 8.87 34.86 3.18
241 242 1.889891 AACAGTTCAAACACGCGTTG 58.110 45.000 10.22 5.93 34.86 4.10
242 243 2.538132 GCTAACAGTTCAAACACGCGTT 60.538 45.455 10.22 0.00 36.73 4.84
243 244 1.004292 GCTAACAGTTCAAACACGCGT 60.004 47.619 5.58 5.58 0.00 6.01
244 245 1.658968 GCTAACAGTTCAAACACGCG 58.341 50.000 3.53 3.53 0.00 6.01
245 246 1.602377 AGGCTAACAGTTCAAACACGC 59.398 47.619 0.00 0.00 0.00 5.34
246 247 3.963383 AAGGCTAACAGTTCAAACACG 57.037 42.857 0.00 0.00 0.00 4.49
247 248 6.803154 AGATAAGGCTAACAGTTCAAACAC 57.197 37.500 0.00 0.00 0.00 3.32
248 249 7.817418 AAAGATAAGGCTAACAGTTCAAACA 57.183 32.000 0.00 0.00 0.00 2.83
249 250 8.235226 GGTAAAGATAAGGCTAACAGTTCAAAC 58.765 37.037 0.00 0.00 0.00 2.93
250 251 7.118680 CGGTAAAGATAAGGCTAACAGTTCAAA 59.881 37.037 0.00 0.00 0.00 2.69
251 252 6.592607 CGGTAAAGATAAGGCTAACAGTTCAA 59.407 38.462 0.00 0.00 0.00 2.69
252 253 6.071221 TCGGTAAAGATAAGGCTAACAGTTCA 60.071 38.462 0.00 0.00 0.00 3.18
253 254 6.335777 TCGGTAAAGATAAGGCTAACAGTTC 58.664 40.000 0.00 0.00 0.00 3.01
254 255 6.154021 TCTCGGTAAAGATAAGGCTAACAGTT 59.846 38.462 0.00 0.00 0.00 3.16
255 256 5.655532 TCTCGGTAAAGATAAGGCTAACAGT 59.344 40.000 0.00 0.00 0.00 3.55
256 257 5.978322 GTCTCGGTAAAGATAAGGCTAACAG 59.022 44.000 0.00 0.00 0.00 3.16
257 258 5.449588 CGTCTCGGTAAAGATAAGGCTAACA 60.450 44.000 0.00 0.00 0.00 2.41
258 259 4.974888 CGTCTCGGTAAAGATAAGGCTAAC 59.025 45.833 0.00 0.00 0.00 2.34
259 260 4.641989 ACGTCTCGGTAAAGATAAGGCTAA 59.358 41.667 0.00 0.00 0.00 3.09
260 261 4.202441 ACGTCTCGGTAAAGATAAGGCTA 58.798 43.478 0.00 0.00 0.00 3.93
261 262 3.022406 ACGTCTCGGTAAAGATAAGGCT 58.978 45.455 0.00 0.00 0.00 4.58
262 263 3.370276 GACGTCTCGGTAAAGATAAGGC 58.630 50.000 8.70 0.00 0.00 4.35
263 264 3.310774 TCGACGTCTCGGTAAAGATAAGG 59.689 47.826 14.70 0.00 40.58 2.69
264 265 4.516359 CTCGACGTCTCGGTAAAGATAAG 58.484 47.826 14.70 0.00 40.58 1.73
265 266 3.242543 GCTCGACGTCTCGGTAAAGATAA 60.243 47.826 14.70 0.00 40.58 1.75
266 267 2.286294 GCTCGACGTCTCGGTAAAGATA 59.714 50.000 14.70 0.00 40.58 1.98
267 268 1.063764 GCTCGACGTCTCGGTAAAGAT 59.936 52.381 14.70 0.00 40.58 2.40
268 269 0.445436 GCTCGACGTCTCGGTAAAGA 59.555 55.000 14.70 0.00 40.58 2.52
269 270 0.522915 GGCTCGACGTCTCGGTAAAG 60.523 60.000 14.70 0.00 40.58 1.85
270 271 0.957395 AGGCTCGACGTCTCGGTAAA 60.957 55.000 14.70 0.00 40.58 2.01
271 272 1.376424 AGGCTCGACGTCTCGGTAA 60.376 57.895 14.70 0.00 40.58 2.85
272 273 2.104859 CAGGCTCGACGTCTCGGTA 61.105 63.158 14.70 0.00 40.58 4.02
273 274 3.432588 CAGGCTCGACGTCTCGGT 61.433 66.667 14.70 0.00 40.58 4.69
274 275 4.838486 GCAGGCTCGACGTCTCGG 62.838 72.222 14.70 4.55 40.58 4.63
275 276 3.805307 AGCAGGCTCGACGTCTCG 61.805 66.667 14.70 1.54 41.65 4.04
276 277 2.201436 TTCAGCAGGCTCGACGTCTC 62.201 60.000 14.70 2.42 0.00 3.36
277 278 2.268802 TTCAGCAGGCTCGACGTCT 61.269 57.895 14.70 0.00 0.00 4.18
278 279 2.089349 GTTCAGCAGGCTCGACGTC 61.089 63.158 5.18 5.18 0.00 4.34
279 280 2.049063 GTTCAGCAGGCTCGACGT 60.049 61.111 0.00 0.00 0.00 4.34
280 281 2.091112 CAGTTCAGCAGGCTCGACG 61.091 63.158 0.00 0.00 0.00 5.12
281 282 0.601311 AACAGTTCAGCAGGCTCGAC 60.601 55.000 0.00 0.00 0.00 4.20
282 283 0.601046 CAACAGTTCAGCAGGCTCGA 60.601 55.000 0.00 0.00 0.00 4.04
283 284 0.882042 ACAACAGTTCAGCAGGCTCG 60.882 55.000 0.00 0.00 0.00 5.03
284 285 0.871057 GACAACAGTTCAGCAGGCTC 59.129 55.000 0.00 0.00 0.00 4.70
285 286 0.471617 AGACAACAGTTCAGCAGGCT 59.528 50.000 0.00 0.00 0.00 4.58
286 287 0.590195 CAGACAACAGTTCAGCAGGC 59.410 55.000 0.00 0.00 0.00 4.85
287 288 1.600957 CACAGACAACAGTTCAGCAGG 59.399 52.381 0.00 0.00 0.00 4.85
288 289 2.554142 TCACAGACAACAGTTCAGCAG 58.446 47.619 0.00 0.00 0.00 4.24
289 290 2.689553 TCACAGACAACAGTTCAGCA 57.310 45.000 0.00 0.00 0.00 4.41
290 291 4.201950 ACAAATCACAGACAACAGTTCAGC 60.202 41.667 0.00 0.00 0.00 4.26
291 292 5.490139 ACAAATCACAGACAACAGTTCAG 57.510 39.130 0.00 0.00 0.00 3.02
292 293 6.993786 TTACAAATCACAGACAACAGTTCA 57.006 33.333 0.00 0.00 0.00 3.18
293 294 6.691388 GGTTTACAAATCACAGACAACAGTTC 59.309 38.462 0.00 0.00 0.00 3.01
294 295 6.377146 AGGTTTACAAATCACAGACAACAGTT 59.623 34.615 0.00 0.00 0.00 3.16
295 296 5.885912 AGGTTTACAAATCACAGACAACAGT 59.114 36.000 0.00 0.00 0.00 3.55
296 297 6.377327 AGGTTTACAAATCACAGACAACAG 57.623 37.500 0.00 0.00 0.00 3.16
297 298 7.867305 TTAGGTTTACAAATCACAGACAACA 57.133 32.000 0.00 0.00 0.00 3.33
298 299 9.016623 GTTTTAGGTTTACAAATCACAGACAAC 57.983 33.333 0.00 0.00 0.00 3.32
299 300 8.962679 AGTTTTAGGTTTACAAATCACAGACAA 58.037 29.630 0.00 0.00 0.00 3.18
300 301 8.514330 AGTTTTAGGTTTACAAATCACAGACA 57.486 30.769 0.00 0.00 0.00 3.41
310 311 9.685828 GCATTCACATAAGTTTTAGGTTTACAA 57.314 29.630 0.00 0.00 0.00 2.41
311 312 9.073475 AGCATTCACATAAGTTTTAGGTTTACA 57.927 29.630 0.00 0.00 0.00 2.41
312 313 9.341899 CAGCATTCACATAAGTTTTAGGTTTAC 57.658 33.333 0.00 0.00 0.00 2.01
313 314 8.026607 GCAGCATTCACATAAGTTTTAGGTTTA 58.973 33.333 0.00 0.00 0.00 2.01
314 315 6.868339 GCAGCATTCACATAAGTTTTAGGTTT 59.132 34.615 0.00 0.00 0.00 3.27
315 316 6.389906 GCAGCATTCACATAAGTTTTAGGTT 58.610 36.000 0.00 0.00 0.00 3.50
316 317 5.105756 GGCAGCATTCACATAAGTTTTAGGT 60.106 40.000 0.00 0.00 0.00 3.08
317 318 5.126061 AGGCAGCATTCACATAAGTTTTAGG 59.874 40.000 0.00 0.00 0.00 2.69
318 319 6.199937 AGGCAGCATTCACATAAGTTTTAG 57.800 37.500 0.00 0.00 0.00 1.85
319 320 6.015519 ACAAGGCAGCATTCACATAAGTTTTA 60.016 34.615 0.00 0.00 0.00 1.52
320 321 5.221501 ACAAGGCAGCATTCACATAAGTTTT 60.222 36.000 0.00 0.00 0.00 2.43
321 322 4.281688 ACAAGGCAGCATTCACATAAGTTT 59.718 37.500 0.00 0.00 0.00 2.66
322 323 3.828451 ACAAGGCAGCATTCACATAAGTT 59.172 39.130 0.00 0.00 0.00 2.66
323 324 3.192001 CACAAGGCAGCATTCACATAAGT 59.808 43.478 0.00 0.00 0.00 2.24
324 325 3.428452 CCACAAGGCAGCATTCACATAAG 60.428 47.826 0.00 0.00 0.00 1.73
325 326 2.492881 CCACAAGGCAGCATTCACATAA 59.507 45.455 0.00 0.00 0.00 1.90
326 327 2.093890 CCACAAGGCAGCATTCACATA 58.906 47.619 0.00 0.00 0.00 2.29
327 328 0.892755 CCACAAGGCAGCATTCACAT 59.107 50.000 0.00 0.00 0.00 3.21
328 329 2.343506 CCACAAGGCAGCATTCACA 58.656 52.632 0.00 0.00 0.00 3.58
339 340 8.652463 CGGTTTTAAATTAATAAAGCCACAAGG 58.348 33.333 13.73 0.00 42.80 3.61
340 341 8.652463 CCGGTTTTAAATTAATAAAGCCACAAG 58.348 33.333 13.73 2.06 42.80 3.16
341 342 8.365647 TCCGGTTTTAAATTAATAAAGCCACAA 58.634 29.630 13.73 0.74 42.80 3.33
342 343 7.813627 GTCCGGTTTTAAATTAATAAAGCCACA 59.186 33.333 13.73 1.27 42.80 4.17
343 344 7.008538 CGTCCGGTTTTAAATTAATAAAGCCAC 59.991 37.037 13.73 6.98 42.80 5.01
344 345 7.028361 CGTCCGGTTTTAAATTAATAAAGCCA 58.972 34.615 13.73 0.00 42.80 4.75
345 346 6.020440 GCGTCCGGTTTTAAATTAATAAAGCC 60.020 38.462 0.00 6.54 40.64 4.35
346 347 6.748658 AGCGTCCGGTTTTAAATTAATAAAGC 59.251 34.615 0.00 0.00 0.00 3.51
347 348 8.677871 AAGCGTCCGGTTTTAAATTAATAAAG 57.322 30.769 0.00 0.00 31.14 1.85
348 349 7.481169 CGAAGCGTCCGGTTTTAAATTAATAAA 59.519 33.333 0.00 0.00 35.84 1.40
349 350 6.960431 CGAAGCGTCCGGTTTTAAATTAATAA 59.040 34.615 0.00 0.00 35.84 1.40
350 351 6.091986 ACGAAGCGTCCGGTTTTAAATTAATA 59.908 34.615 0.00 0.00 33.69 0.98
351 352 5.106594 ACGAAGCGTCCGGTTTTAAATTAAT 60.107 36.000 0.00 0.00 33.69 1.40
352 353 4.213059 ACGAAGCGTCCGGTTTTAAATTAA 59.787 37.500 0.00 0.00 33.69 1.40
353 354 3.745458 ACGAAGCGTCCGGTTTTAAATTA 59.255 39.130 0.00 0.00 33.69 1.40
354 355 2.549329 ACGAAGCGTCCGGTTTTAAATT 59.451 40.909 0.00 0.00 33.69 1.82
355 356 2.096119 CACGAAGCGTCCGGTTTTAAAT 60.096 45.455 0.00 0.00 38.32 1.40
356 357 1.261089 CACGAAGCGTCCGGTTTTAAA 59.739 47.619 0.00 0.00 38.32 1.52
357 358 0.860533 CACGAAGCGTCCGGTTTTAA 59.139 50.000 0.00 0.00 38.32 1.52
358 359 1.559149 GCACGAAGCGTCCGGTTTTA 61.559 55.000 0.00 0.00 38.32 1.52
359 360 2.888998 GCACGAAGCGTCCGGTTTT 61.889 57.895 0.00 0.00 38.32 2.43
360 361 3.343421 GCACGAAGCGTCCGGTTT 61.343 61.111 0.00 0.00 38.32 3.27
369 370 2.875080 AAAATGTAGACGCACGAAGC 57.125 45.000 0.00 0.00 40.87 3.86
370 371 5.672051 TGTTTAAAATGTAGACGCACGAAG 58.328 37.500 0.00 0.00 0.00 3.79
371 372 5.654317 TGTTTAAAATGTAGACGCACGAA 57.346 34.783 0.00 0.00 0.00 3.85
372 373 5.654317 TTGTTTAAAATGTAGACGCACGA 57.346 34.783 0.00 0.00 0.00 4.35
373 374 6.719915 TTTTGTTTAAAATGTAGACGCACG 57.280 33.333 0.00 0.00 31.13 5.34
413 414 2.018544 CAGACGCCGTGGTTCAAAA 58.981 52.632 0.00 0.00 0.00 2.44
416 417 3.858868 GAGCAGACGCCGTGGTTCA 62.859 63.158 0.00 0.00 39.83 3.18
417 418 3.112709 GAGCAGACGCCGTGGTTC 61.113 66.667 0.00 0.00 39.83 3.62
418 419 3.616721 AGAGCAGACGCCGTGGTT 61.617 61.111 0.00 0.00 39.83 3.67
437 439 4.702612 ACAGCTACATATCTCTATGGACGG 59.297 45.833 0.00 0.00 39.29 4.79
442 444 4.338596 CGCGACAGCTACATATCTCTATG 58.661 47.826 0.00 0.00 42.32 2.23
448 450 1.269102 ACACCGCGACAGCTACATATC 60.269 52.381 8.23 0.00 42.32 1.63
464 466 2.099427 GAGAGATACGGGTCTGAACACC 59.901 54.545 0.00 0.00 35.42 4.16
511 528 0.879765 CAGCCAAGCAGTTCCTTCTG 59.120 55.000 0.00 0.00 38.35 3.02
512 529 0.767375 TCAGCCAAGCAGTTCCTTCT 59.233 50.000 0.00 0.00 0.00 2.85
513 530 1.268079 GTTCAGCCAAGCAGTTCCTTC 59.732 52.381 0.00 0.00 0.00 3.46
514 531 1.322442 GTTCAGCCAAGCAGTTCCTT 58.678 50.000 0.00 0.00 0.00 3.36
515 532 0.886490 CGTTCAGCCAAGCAGTTCCT 60.886 55.000 0.00 0.00 0.00 3.36
516 533 1.576421 CGTTCAGCCAAGCAGTTCC 59.424 57.895 0.00 0.00 0.00 3.62
517 534 0.884704 TCCGTTCAGCCAAGCAGTTC 60.885 55.000 0.00 0.00 0.00 3.01
518 535 0.465460 TTCCGTTCAGCCAAGCAGTT 60.465 50.000 0.00 0.00 0.00 3.16
519 536 0.886490 CTTCCGTTCAGCCAAGCAGT 60.886 55.000 0.00 0.00 0.00 4.40
520 537 0.886490 ACTTCCGTTCAGCCAAGCAG 60.886 55.000 0.00 0.00 0.00 4.24
521 538 0.884704 GACTTCCGTTCAGCCAAGCA 60.885 55.000 0.00 0.00 0.00 3.91
522 539 0.884704 TGACTTCCGTTCAGCCAAGC 60.885 55.000 0.00 0.00 0.00 4.01
576 594 2.047274 CACCGGACACAAGGCGAT 60.047 61.111 9.46 0.00 0.00 4.58
577 595 4.308458 CCACCGGACACAAGGCGA 62.308 66.667 9.46 0.00 0.00 5.54
579 597 4.643387 AGCCACCGGACACAAGGC 62.643 66.667 9.46 11.47 45.54 4.35
669 691 2.351726 CCGCATTTTCTAGCACAGGTAC 59.648 50.000 0.00 0.00 0.00 3.34
670 692 2.627945 CCGCATTTTCTAGCACAGGTA 58.372 47.619 0.00 0.00 0.00 3.08
671 693 1.453155 CCGCATTTTCTAGCACAGGT 58.547 50.000 0.00 0.00 0.00 4.00
672 694 0.734889 CCCGCATTTTCTAGCACAGG 59.265 55.000 0.00 0.00 0.00 4.00
673 695 0.734889 CCCCGCATTTTCTAGCACAG 59.265 55.000 0.00 0.00 0.00 3.66
677 699 1.017387 CTCACCCCGCATTTTCTAGC 58.983 55.000 0.00 0.00 0.00 3.42
682 704 3.061848 CCGCTCACCCCGCATTTT 61.062 61.111 0.00 0.00 0.00 1.82
700 722 3.691342 CAAGTGGGACGGCTCGGA 61.691 66.667 0.00 0.00 0.00 4.55
702 724 4.680237 TGCAAGTGGGACGGCTCG 62.680 66.667 0.00 0.00 0.00 5.03
723 745 1.303309 GCCGATGAACAATGGAGGAG 58.697 55.000 0.00 0.00 0.00 3.69
728 750 0.248215 GAAGCGCCGATGAACAATGG 60.248 55.000 2.29 0.00 0.00 3.16
729 751 0.447406 TGAAGCGCCGATGAACAATG 59.553 50.000 2.29 0.00 0.00 2.82
730 752 1.164411 TTGAAGCGCCGATGAACAAT 58.836 45.000 2.29 0.00 0.00 2.71
731 753 0.947960 TTTGAAGCGCCGATGAACAA 59.052 45.000 2.29 0.00 0.00 2.83
774 796 3.069729 CCAGTAAGGTAGGTAGGTGCATC 59.930 52.174 0.00 0.00 0.00 3.91
795 817 7.154656 CGTTGGTACCTAATAGGGTATTTACC 58.845 42.308 14.36 12.59 42.84 2.85
796 818 7.154656 CCGTTGGTACCTAATAGGGTATTTAC 58.845 42.308 14.36 3.63 42.84 2.01
797 819 6.239572 GCCGTTGGTACCTAATAGGGTATTTA 60.240 42.308 14.36 0.00 42.84 1.40
798 820 5.455183 GCCGTTGGTACCTAATAGGGTATTT 60.455 44.000 14.36 0.00 42.84 1.40
804 826 2.168936 TGTGCCGTTGGTACCTAATAGG 59.831 50.000 14.36 4.46 42.49 2.57
888 935 9.472361 GCTTCGTTTGGTTGACTATATATAAGA 57.528 33.333 0.00 0.00 0.00 2.10
889 936 9.256477 TGCTTCGTTTGGTTGACTATATATAAG 57.744 33.333 0.00 0.00 0.00 1.73
944 991 6.261826 TCCTTCTTGAGCTTTCTTTCAAAGAG 59.738 38.462 0.00 0.00 39.03 2.85
945 992 6.122277 TCCTTCTTGAGCTTTCTTTCAAAGA 58.878 36.000 0.00 0.00 33.30 2.52
984 1043 3.058224 CGTCCATTGTTTCTCCCTTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
985 1044 2.884639 CGTCCATTGTTTCTCCCTTTGT 59.115 45.455 0.00 0.00 0.00 2.83
986 1045 2.228822 CCGTCCATTGTTTCTCCCTTTG 59.771 50.000 0.00 0.00 0.00 2.77
987 1046 2.514803 CCGTCCATTGTTTCTCCCTTT 58.485 47.619 0.00 0.00 0.00 3.11
996 1055 1.247567 CTTTGCTCCCGTCCATTGTT 58.752 50.000 0.00 0.00 0.00 2.83
1128 1192 2.619147 CTACCACGTCGAGAGAGAGAA 58.381 52.381 0.00 0.00 43.49 2.87
1155 1247 0.254178 ATCAGGAATGCGGTCAAGCT 59.746 50.000 0.00 0.00 38.13 3.74
1156 1248 1.098050 AATCAGGAATGCGGTCAAGC 58.902 50.000 0.00 0.00 37.71 4.01
1157 1249 2.489329 ACAAATCAGGAATGCGGTCAAG 59.511 45.455 0.00 0.00 0.00 3.02
1158 1250 2.513753 ACAAATCAGGAATGCGGTCAA 58.486 42.857 0.00 0.00 0.00 3.18
1189 1285 1.865865 TCTTCTCAACGTTGGCTGAC 58.134 50.000 27.02 0.00 0.00 3.51
1277 1373 2.720758 CGTCGTCGAAGCTGCCTTG 61.721 63.158 0.00 0.00 39.71 3.61
1372 1468 1.405526 CCGTGGCTATCCCGGATATTG 60.406 57.143 0.73 0.00 44.09 1.90
1374 1470 0.040646 TCCGTGGCTATCCCGGATAT 59.959 55.000 0.73 0.00 44.59 1.63
1375 1471 0.178955 TTCCGTGGCTATCCCGGATA 60.179 55.000 0.73 6.95 46.83 2.59
1376 1472 1.052124 TTTCCGTGGCTATCCCGGAT 61.052 55.000 0.73 4.99 46.83 4.18
1377 1473 1.052124 ATTTCCGTGGCTATCCCGGA 61.052 55.000 0.73 10.12 46.36 5.14
1379 1475 1.343465 AGTATTTCCGTGGCTATCCCG 59.657 52.381 0.00 0.00 35.87 5.14
1382 1478 2.802816 CAGCAGTATTTCCGTGGCTATC 59.197 50.000 0.00 0.00 0.00 2.08
1412 1547 5.675575 GCATTCACCTCAGCTTTTGATACTG 60.676 44.000 0.00 0.00 34.68 2.74
1420 1558 2.555757 GTTCTGCATTCACCTCAGCTTT 59.444 45.455 0.00 0.00 0.00 3.51
1423 1561 0.445436 CGTTCTGCATTCACCTCAGC 59.555 55.000 0.00 0.00 0.00 4.26
1495 1633 3.241530 TTCACGGTGCCAGCCTCT 61.242 61.111 2.51 0.00 0.00 3.69
1650 1788 1.480545 GAGGTGGAGAAGAGAAGCCTC 59.519 57.143 0.00 0.00 39.72 4.70
1651 1789 1.078656 AGAGGTGGAGAAGAGAAGCCT 59.921 52.381 0.00 0.00 0.00 4.58
1652 1790 1.567357 AGAGGTGGAGAAGAGAAGCC 58.433 55.000 0.00 0.00 0.00 4.35
1665 1803 2.481952 GCTGCTTCAACAAGTAGAGGTG 59.518 50.000 4.24 0.00 43.26 4.00
1666 1804 2.104792 TGCTGCTTCAACAAGTAGAGGT 59.895 45.455 0.00 0.00 43.26 3.85
1823 1979 4.845580 ATGCCGGCGCTGAGGAAG 62.846 66.667 23.90 0.57 35.36 3.46
1877 2033 3.072468 TAGTGGGCCTCGTTCCCG 61.072 66.667 4.53 0.00 46.92 5.14
2029 2185 2.907897 GAACCTGTCCCGGAGCATCG 62.908 65.000 0.73 0.00 34.37 3.84
2119 2275 2.182030 CGTGGTCGAGGAGCTTCC 59.818 66.667 0.00 0.00 39.71 3.46
2371 2527 4.780021 ACTCATAGTCCATGATATCCCACC 59.220 45.833 0.00 0.00 42.82 4.61
2522 2679 1.677576 TGTCAGCAGTTTTGAAGCCTG 59.322 47.619 0.00 0.00 0.00 4.85
2538 2699 7.234782 ACCTCCGATCCATAATAATAAGTGTCA 59.765 37.037 0.00 0.00 0.00 3.58
2556 2717 3.788937 CGTAAATGTTACCACCTCCGAT 58.211 45.455 0.00 0.00 0.00 4.18
2559 2720 2.011947 GGCGTAAATGTTACCACCTCC 58.988 52.381 0.00 0.00 0.00 4.30
2565 2726 5.392272 CCCAAGTAAAGGCGTAAATGTTACC 60.392 44.000 0.00 0.00 0.00 2.85
2703 2864 8.939201 ATAGCCATATCATCAATCGTTTAGAG 57.061 34.615 0.00 0.00 0.00 2.43
3051 3212 3.304829 ACAACAAAGGGGTGCTACAATT 58.695 40.909 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.