Multiple sequence alignment - TraesCS3A01G225800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G225800 chr3A 100.000 5701 0 0 1 5701 423492227 423486527 0.000000e+00 10528.0
1 TraesCS3A01G225800 chr3D 96.558 2063 58 10 2907 4963 305454472 305452417 0.000000e+00 3404.0
2 TraesCS3A01G225800 chr3D 91.439 1320 59 9 305 1598 305457371 305456080 0.000000e+00 1762.0
3 TraesCS3A01G225800 chr3D 94.730 740 34 4 4965 5701 305452363 305451626 0.000000e+00 1146.0
4 TraesCS3A01G225800 chr3D 83.358 673 75 15 1613 2277 305455892 305455249 6.360000e-164 588.0
5 TraesCS3A01G225800 chr3D 94.186 172 6 1 2297 2468 305455180 305455013 5.670000e-65 259.0
6 TraesCS3A01G225800 chr3D 95.139 144 7 0 2600 2743 305454623 305454480 1.600000e-55 228.0
7 TraesCS3A01G225800 chr3D 97.674 43 1 0 1 43 305457438 305457396 2.200000e-09 75.0
8 TraesCS3A01G225800 chr3B 94.556 1892 61 11 3835 5701 416279123 416280997 0.000000e+00 2885.0
9 TraesCS3A01G225800 chr3B 90.388 1623 97 14 1 1595 416274860 416276451 0.000000e+00 2078.0
10 TraesCS3A01G225800 chr3B 97.096 861 20 4 2977 3836 416278186 416279042 0.000000e+00 1447.0
11 TraesCS3A01G225800 chr3B 87.469 407 31 13 1881 2277 416276912 416277308 8.710000e-123 451.0
12 TraesCS3A01G225800 chr3B 96.175 183 7 0 2297 2479 416277377 416277559 3.340000e-77 300.0
13 TraesCS3A01G225800 chr3B 87.245 196 24 1 1613 1808 189709420 189709614 7.430000e-54 222.0
14 TraesCS3A01G225800 chr3B 93.333 60 3 1 2809 2868 581966077 581966019 2.830000e-13 87.9
15 TraesCS3A01G225800 chr3B 91.071 56 4 1 2475 2529 416277919 416277974 2.200000e-09 75.0
16 TraesCS3A01G225800 chr3B 81.000 100 10 2 2809 2908 665451191 665451101 2.850000e-08 71.3
17 TraesCS3A01G225800 chr4D 90.604 149 12 2 3739 3885 246080529 246080381 4.510000e-46 196.0
18 TraesCS3A01G225800 chr4D 90.667 75 7 0 2741 2815 261087188 261087262 3.630000e-17 100.0
19 TraesCS3A01G225800 chr7A 85.405 185 25 2 1613 1797 37188242 37188424 2.100000e-44 191.0
20 TraesCS3A01G225800 chr2A 84.865 185 26 2 1613 1797 70447703 70447885 9.750000e-43 185.0
21 TraesCS3A01G225800 chr2A 93.671 79 4 1 2734 2812 581959974 581960051 3.610000e-22 117.0
22 TraesCS3A01G225800 chr2B 95.833 72 3 0 2741 2812 69342414 69342485 3.610000e-22 117.0
23 TraesCS3A01G225800 chr2B 90.789 76 7 0 2096 2171 792319852 792319777 1.010000e-17 102.0
24 TraesCS3A01G225800 chr5D 90.789 76 6 1 2096 2171 553666130 553666056 3.630000e-17 100.0
25 TraesCS3A01G225800 chr1D 90.789 76 6 1 2096 2171 427728259 427728185 3.630000e-17 100.0
26 TraesCS3A01G225800 chr1D 85.333 75 9 1 2741 2815 95867060 95866988 6.130000e-10 76.8
27 TraesCS3A01G225800 chr5B 89.474 76 8 0 2096 2171 669189733 669189658 4.700000e-16 97.1
28 TraesCS3A01G225800 chr7D 92.424 66 5 0 2741 2806 619881073 619881138 1.690000e-15 95.3
29 TraesCS3A01G225800 chr7B 90.278 72 7 0 2741 2812 716962836 716962907 1.690000e-15 95.3
30 TraesCS3A01G225800 chr7B 89.394 66 7 0 2747 2812 17550211 17550276 3.660000e-12 84.2
31 TraesCS3A01G225800 chr7B 91.525 59 5 0 2813 2871 216938314 216938256 1.320000e-11 82.4
32 TraesCS3A01G225800 chr7B 95.349 43 2 0 2827 2869 312816763 312816721 1.020000e-07 69.4
33 TraesCS3A01G225800 chr7B 90.385 52 4 1 2822 2872 729403064 729403115 3.690000e-07 67.6
34 TraesCS3A01G225800 chr2D 87.179 78 8 1 2740 2815 544882974 544882897 2.830000e-13 87.9
35 TraesCS3A01G225800 chr1B 86.111 72 8 2 2741 2812 156852483 156852552 6.130000e-10 76.8
36 TraesCS3A01G225800 chr1B 93.333 45 2 1 2825 2869 632159457 632159414 1.330000e-06 65.8
37 TraesCS3A01G225800 chr4A 95.556 45 2 0 2825 2869 731405512 731405556 7.920000e-09 73.1
38 TraesCS3A01G225800 chr5A 89.286 56 6 0 2813 2868 559809546 559809601 2.850000e-08 71.3
39 TraesCS3A01G225800 chr4B 94.872 39 2 0 2830 2868 35256799 35256837 1.720000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G225800 chr3A 423486527 423492227 5700 True 10528 10528 100.000000 1 5701 1 chr3A.!!$R1 5700
1 TraesCS3A01G225800 chr3D 305451626 305457438 5812 True 1066 3404 93.297714 1 5701 7 chr3D.!!$R1 5700
2 TraesCS3A01G225800 chr3B 416274860 416280997 6137 False 1206 2885 92.792500 1 5701 6 chr3B.!!$F2 5700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
472 476 0.104672 TCTTGGACCACAGGGAAGGA 60.105 55.0 0.00 0.00 38.05 3.36 F
1855 2090 0.038744 AAGTGGGCATCAAGTCAGGG 59.961 55.0 0.00 0.00 0.00 4.45 F
2436 2739 0.039618 TCCTTGTTGGGCCAATCTCC 59.960 55.0 23.95 10.06 36.20 3.71 F
2535 3202 0.114364 TTTCCCCTTGCCTCCCTTTC 59.886 55.0 0.00 0.00 0.00 2.62 F
2883 3649 0.158928 CGTTCGACTGTTTGAGCGAC 59.841 55.0 12.44 0.00 41.20 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 2157 0.238817 TATGTTTCCCGCGTGCAAAC 59.761 50.000 4.92 11.24 0.00 2.93 R
3081 3848 0.032267 GGGCTAAGATCGTCCCTTCG 59.968 60.000 7.19 0.00 35.87 3.79 R
3934 4787 0.101579 TGCTTCGATACGATTCGCCA 59.898 50.000 5.86 0.00 38.97 5.69 R
4433 5287 4.207955 TCTCATACTGAACGCCTGATACT 58.792 43.478 0.00 0.00 0.00 2.12 R
4829 5691 2.099592 CCACAAACATGACACACTTGCT 59.900 45.455 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 6.147864 ACTGACTAAATTCTGCAAAGCAAA 57.852 33.333 0.00 0.00 38.41 3.68
68 69 3.248266 CAAAGCAAATGAGCTGTTAGGC 58.752 45.455 0.00 0.00 45.89 3.93
84 85 0.990374 AGGCTTGCCTGAGATGACTT 59.010 50.000 13.99 0.00 0.00 3.01
85 86 1.353694 AGGCTTGCCTGAGATGACTTT 59.646 47.619 13.99 0.00 0.00 2.66
130 131 7.226720 CCTTGTTTCTTAGAGCTGTAAACAGAA 59.773 37.037 14.21 2.43 46.59 3.02
182 183 5.252969 TGTGAGCGTTAGTAATTCCGTAT 57.747 39.130 0.00 0.00 0.00 3.06
183 184 6.375945 TGTGAGCGTTAGTAATTCCGTATA 57.624 37.500 0.00 0.00 0.00 1.47
228 229 1.347707 GTCCTCATATTGGGCCGATCA 59.652 52.381 10.27 0.00 0.00 2.92
236 237 1.896220 TTGGGCCGATCAGCATAATC 58.104 50.000 2.82 0.00 0.00 1.75
239 240 1.543208 GGGCCGATCAGCATAATCACA 60.543 52.381 2.82 0.00 0.00 3.58
240 241 2.221169 GGCCGATCAGCATAATCACAA 58.779 47.619 2.82 0.00 0.00 3.33
242 243 3.254166 GGCCGATCAGCATAATCACAATT 59.746 43.478 2.82 0.00 0.00 2.32
249 250 7.908601 CGATCAGCATAATCACAATTGATATGG 59.091 37.037 13.59 4.50 42.00 2.74
258 259 6.448207 TCACAATTGATATGGCGATTTTGA 57.552 33.333 13.59 0.00 30.03 2.69
259 260 6.861144 TCACAATTGATATGGCGATTTTGAA 58.139 32.000 13.59 0.00 29.75 2.69
266 267 7.990541 TGATATGGCGATTTTGAATGAAAAG 57.009 32.000 0.00 0.00 36.97 2.27
267 268 6.979817 TGATATGGCGATTTTGAATGAAAAGG 59.020 34.615 0.00 0.00 36.97 3.11
268 269 4.862902 TGGCGATTTTGAATGAAAAGGA 57.137 36.364 0.00 0.00 36.97 3.36
271 272 5.170748 GGCGATTTTGAATGAAAAGGACAT 58.829 37.500 0.00 0.00 36.97 3.06
280 281 6.690530 TGAATGAAAAGGACATTTTAGCAGG 58.309 36.000 0.00 0.00 41.24 4.85
281 282 5.665916 ATGAAAAGGACATTTTAGCAGGG 57.334 39.130 0.00 0.00 41.24 4.45
282 283 4.479158 TGAAAAGGACATTTTAGCAGGGT 58.521 39.130 0.00 0.00 41.24 4.34
283 284 4.522789 TGAAAAGGACATTTTAGCAGGGTC 59.477 41.667 0.00 0.00 41.24 4.46
284 285 3.806949 AAGGACATTTTAGCAGGGTCA 57.193 42.857 0.00 0.00 0.00 4.02
285 286 3.806949 AGGACATTTTAGCAGGGTCAA 57.193 42.857 0.00 0.00 0.00 3.18
286 287 4.322057 AGGACATTTTAGCAGGGTCAAT 57.678 40.909 0.00 0.00 0.00 2.57
288 289 5.826643 AGGACATTTTAGCAGGGTCAATAA 58.173 37.500 0.00 0.00 0.00 1.40
290 291 6.723977 AGGACATTTTAGCAGGGTCAATAAAA 59.276 34.615 0.00 0.00 33.15 1.52
291 292 7.234577 AGGACATTTTAGCAGGGTCAATAAAAA 59.765 33.333 0.00 0.00 32.57 1.94
330 332 5.279006 GTCCTATTGACAAGTGAGTCTCACA 60.279 44.000 29.99 12.41 45.31 3.58
342 344 4.569966 GTGAGTCTCACAATATGAAGGCAG 59.430 45.833 25.11 0.00 46.22 4.85
350 352 6.541907 TCACAATATGAAGGCAGCCAATATA 58.458 36.000 15.80 8.98 33.02 0.86
351 353 7.177184 TCACAATATGAAGGCAGCCAATATAT 58.823 34.615 15.80 10.89 33.02 0.86
353 355 8.618677 CACAATATGAAGGCAGCCAATATATAG 58.381 37.037 15.80 9.73 0.00 1.31
357 359 6.042638 TGAAGGCAGCCAATATATAGACTC 57.957 41.667 15.80 0.00 0.00 3.36
360 362 4.469227 AGGCAGCCAATATATAGACTCTGG 59.531 45.833 15.80 0.00 0.00 3.86
366 368 6.330250 AGCCAATATATAGACTCTGGGTTTGT 59.670 38.462 0.00 0.00 30.77 2.83
367 369 6.428159 GCCAATATATAGACTCTGGGTTTGTG 59.572 42.308 1.94 0.00 0.00 3.33
382 384 3.119495 GGTTTGTGCATCACCTTGGTATC 60.119 47.826 0.00 0.00 32.73 2.24
431 435 2.571653 AGCTGCCAAACTGGACATACTA 59.428 45.455 0.00 0.00 40.96 1.82
471 475 0.326264 CTCTTGGACCACAGGGAAGG 59.674 60.000 0.00 0.00 38.05 3.46
472 476 0.104672 TCTTGGACCACAGGGAAGGA 60.105 55.000 0.00 0.00 38.05 3.36
473 477 0.995024 CTTGGACCACAGGGAAGGAT 59.005 55.000 0.00 0.00 38.05 3.24
486 492 8.709308 CCACAGGGAAGGATATATATAAAGGAG 58.291 40.741 0.00 0.00 35.59 3.69
530 558 6.470235 CCACAAAATCTGCTCGTGAATAAATC 59.530 38.462 0.00 0.00 0.00 2.17
549 577 5.741388 AATCGTATGCTTCATTCCTGTTC 57.259 39.130 0.00 0.00 0.00 3.18
766 794 0.322975 CCTGTGCAGCTACAAGACCT 59.677 55.000 0.00 0.00 0.00 3.85
838 868 2.815647 GAGAGGGAGGCGCAAACG 60.816 66.667 10.83 0.00 44.07 3.60
852 882 1.228552 AAACGTGGCAGCCCTGAAT 60.229 52.632 9.64 0.00 0.00 2.57
985 1016 1.001974 CACACAGCTAGCCAACAGGTA 59.998 52.381 12.13 0.00 0.00 3.08
986 1017 1.002087 ACACAGCTAGCCAACAGGTAC 59.998 52.381 12.13 0.00 0.00 3.34
987 1018 1.001974 CACAGCTAGCCAACAGGTACA 59.998 52.381 12.13 0.00 0.00 2.90
1077 1108 1.352017 TGCTCCACCATTGATGTCTGT 59.648 47.619 0.00 0.00 0.00 3.41
1277 1308 3.430374 CCCAATGTACCTGTAAGTCCGAG 60.430 52.174 0.00 0.00 0.00 4.63
1278 1309 3.187700 CAATGTACCTGTAAGTCCGAGC 58.812 50.000 0.00 0.00 0.00 5.03
1279 1310 1.180029 TGTACCTGTAAGTCCGAGCC 58.820 55.000 0.00 0.00 0.00 4.70
1280 1311 0.459078 GTACCTGTAAGTCCGAGCCC 59.541 60.000 0.00 0.00 0.00 5.19
1281 1312 1.033746 TACCTGTAAGTCCGAGCCCG 61.034 60.000 0.00 0.00 0.00 6.13
1282 1313 2.050350 CCTGTAAGTCCGAGCCCGA 61.050 63.158 0.00 0.00 38.22 5.14
1339 1370 3.059352 GACATACAAGTCCACAGCCTT 57.941 47.619 0.00 0.00 32.36 4.35
1365 1396 1.228675 AAGCTGTGGAAAGGGCAGG 60.229 57.895 0.00 0.00 0.00 4.85
1453 1484 1.691219 GGAGCCAAGGGTGATGGAA 59.309 57.895 0.00 0.00 40.56 3.53
1473 1504 6.001460 TGGAATTTCAGACGATACAAAGGTT 58.999 36.000 0.00 0.00 0.00 3.50
1480 1511 4.062991 AGACGATACAAAGGTTGGTCAAC 58.937 43.478 5.35 5.35 40.45 3.18
1503 1534 0.178953 ACTGCCCCTCAAATTGCTGT 60.179 50.000 0.00 0.00 0.00 4.40
1504 1535 0.971386 CTGCCCCTCAAATTGCTGTT 59.029 50.000 0.00 0.00 0.00 3.16
1505 1536 1.345415 CTGCCCCTCAAATTGCTGTTT 59.655 47.619 0.00 0.00 0.00 2.83
1506 1537 1.767681 TGCCCCTCAAATTGCTGTTTT 59.232 42.857 0.00 0.00 0.00 2.43
1507 1538 2.968574 TGCCCCTCAAATTGCTGTTTTA 59.031 40.909 0.00 0.00 0.00 1.52
1508 1539 3.582208 TGCCCCTCAAATTGCTGTTTTAT 59.418 39.130 0.00 0.00 0.00 1.40
1509 1540 4.183865 GCCCCTCAAATTGCTGTTTTATC 58.816 43.478 0.00 0.00 0.00 1.75
1510 1541 4.423732 CCCCTCAAATTGCTGTTTTATCG 58.576 43.478 0.00 0.00 0.00 2.92
1511 1542 4.157656 CCCCTCAAATTGCTGTTTTATCGA 59.842 41.667 0.00 0.00 0.00 3.59
1512 1543 5.335127 CCCTCAAATTGCTGTTTTATCGAG 58.665 41.667 0.00 0.00 0.00 4.04
1513 1544 5.123820 CCCTCAAATTGCTGTTTTATCGAGA 59.876 40.000 0.00 0.00 0.00 4.04
1514 1545 6.253746 CCTCAAATTGCTGTTTTATCGAGAG 58.746 40.000 0.00 0.00 0.00 3.20
1554 1585 0.820891 GCATCATGCATTCCCCGACT 60.821 55.000 4.20 0.00 44.26 4.18
1586 1617 2.481185 CACTGCCAATTCCATTTTGCAC 59.519 45.455 0.00 0.00 0.00 4.57
1590 1621 2.078392 CCAATTCCATTTTGCACTGCC 58.922 47.619 0.00 0.00 0.00 4.85
1595 1626 2.533916 TCCATTTTGCACTGCCCATTA 58.466 42.857 0.00 0.00 0.00 1.90
1598 1629 0.972883 TTTTGCACTGCCCATTACCC 59.027 50.000 0.00 0.00 0.00 3.69
1599 1630 0.178950 TTTGCACTGCCCATTACCCA 60.179 50.000 0.00 0.00 0.00 4.51
1600 1631 0.897863 TTGCACTGCCCATTACCCAC 60.898 55.000 0.00 0.00 0.00 4.61
1601 1632 2.406616 GCACTGCCCATTACCCACG 61.407 63.158 0.00 0.00 0.00 4.94
1602 1633 2.045340 ACTGCCCATTACCCACGC 60.045 61.111 0.00 0.00 0.00 5.34
1603 1634 2.045438 CTGCCCATTACCCACGCA 60.045 61.111 0.00 0.00 0.00 5.24
1604 1635 1.453745 CTGCCCATTACCCACGCAT 60.454 57.895 0.00 0.00 0.00 4.73
1605 1636 1.727511 CTGCCCATTACCCACGCATG 61.728 60.000 0.00 0.00 0.00 4.06
1606 1637 1.453015 GCCCATTACCCACGCATGA 60.453 57.895 0.00 0.00 0.00 3.07
1607 1638 0.823356 GCCCATTACCCACGCATGAT 60.823 55.000 0.00 0.00 0.00 2.45
1608 1639 1.691196 CCCATTACCCACGCATGATT 58.309 50.000 0.00 0.00 0.00 2.57
1610 1641 2.552315 CCCATTACCCACGCATGATTAC 59.448 50.000 0.00 0.00 0.00 1.89
1611 1642 3.476552 CCATTACCCACGCATGATTACT 58.523 45.455 0.00 0.00 0.00 2.24
1626 1830 6.315642 GCATGATTACTGTCCTATGATCCATG 59.684 42.308 0.00 0.00 0.00 3.66
1716 1920 6.968131 TTCTGTAGTCAGTATTTGCATGAC 57.032 37.500 8.97 8.97 42.91 3.06
1728 1932 1.211969 GCATGACTGCCTGTGCTTG 59.788 57.895 0.00 0.00 42.88 4.01
1730 1934 1.975407 ATGACTGCCTGTGCTTGCC 60.975 57.895 0.00 0.00 38.71 4.52
1743 1947 4.636249 TGTGCTTGCCGGAAATTTTATTT 58.364 34.783 5.05 0.00 0.00 1.40
1748 1952 6.077197 GCTTGCCGGAAATTTTATTTGTTTC 58.923 36.000 5.05 0.00 0.00 2.78
1766 1970 7.826260 TTGTTTCTTTTTGGATTGTTCTGTC 57.174 32.000 0.00 0.00 0.00 3.51
1843 2078 1.338020 CTCTTGGTGAACAAAGTGGGC 59.662 52.381 0.00 0.00 38.91 5.36
1844 2079 1.110442 CTTGGTGAACAAAGTGGGCA 58.890 50.000 0.00 0.00 38.91 5.36
1845 2080 1.688197 CTTGGTGAACAAAGTGGGCAT 59.312 47.619 0.00 0.00 38.91 4.40
1846 2081 1.327303 TGGTGAACAAAGTGGGCATC 58.673 50.000 0.00 0.00 0.00 3.91
1847 2082 1.327303 GGTGAACAAAGTGGGCATCA 58.673 50.000 0.00 0.00 0.00 3.07
1848 2083 1.686052 GGTGAACAAAGTGGGCATCAA 59.314 47.619 0.00 0.00 0.00 2.57
1849 2084 2.288395 GGTGAACAAAGTGGGCATCAAG 60.288 50.000 0.00 0.00 0.00 3.02
1850 2085 2.362077 GTGAACAAAGTGGGCATCAAGT 59.638 45.455 0.00 0.00 0.00 3.16
1851 2086 2.622942 TGAACAAAGTGGGCATCAAGTC 59.377 45.455 0.00 0.00 0.00 3.01
1852 2087 2.363306 ACAAAGTGGGCATCAAGTCA 57.637 45.000 0.00 0.00 0.00 3.41
1853 2088 2.233271 ACAAAGTGGGCATCAAGTCAG 58.767 47.619 0.00 0.00 0.00 3.51
1854 2089 1.542915 CAAAGTGGGCATCAAGTCAGG 59.457 52.381 0.00 0.00 0.00 3.86
1855 2090 0.038744 AAGTGGGCATCAAGTCAGGG 59.961 55.000 0.00 0.00 0.00 4.45
1856 2091 1.136329 AGTGGGCATCAAGTCAGGGT 61.136 55.000 0.00 0.00 0.00 4.34
1857 2092 0.251341 GTGGGCATCAAGTCAGGGTT 60.251 55.000 0.00 0.00 0.00 4.11
1858 2093 1.004277 GTGGGCATCAAGTCAGGGTTA 59.996 52.381 0.00 0.00 0.00 2.85
1859 2094 1.707989 TGGGCATCAAGTCAGGGTTAA 59.292 47.619 0.00 0.00 0.00 2.01
1860 2095 2.092323 GGGCATCAAGTCAGGGTTAAC 58.908 52.381 0.00 0.00 0.00 2.01
1861 2096 2.554344 GGGCATCAAGTCAGGGTTAACA 60.554 50.000 8.10 0.00 0.00 2.41
1862 2097 3.153919 GGCATCAAGTCAGGGTTAACAA 58.846 45.455 8.10 0.00 0.00 2.83
1863 2098 3.572255 GGCATCAAGTCAGGGTTAACAAA 59.428 43.478 8.10 0.00 0.00 2.83
1864 2099 4.038642 GGCATCAAGTCAGGGTTAACAAAA 59.961 41.667 8.10 0.00 0.00 2.44
1865 2100 5.452636 GGCATCAAGTCAGGGTTAACAAAAA 60.453 40.000 8.10 0.00 0.00 1.94
1932 2168 4.621526 TTCAAAATATTGTTTGCACGCG 57.378 36.364 3.53 3.53 38.20 6.01
1933 2169 2.983136 TCAAAATATTGTTTGCACGCGG 59.017 40.909 12.47 0.00 38.20 6.46
1962 2198 3.799281 TCGATGGCAAAAATTGGGATC 57.201 42.857 0.00 0.00 0.00 3.36
1963 2199 2.098934 TCGATGGCAAAAATTGGGATCG 59.901 45.455 0.00 0.00 34.07 3.69
2079 2326 7.547227 AGGCATACTTGAAATCCAAAATACAC 58.453 34.615 0.00 0.00 33.76 2.90
2085 2332 6.549364 ACTTGAAATCCAAAATACACACCAGA 59.451 34.615 0.00 0.00 33.76 3.86
2089 2336 8.428063 TGAAATCCAAAATACACACCAGAAAAT 58.572 29.630 0.00 0.00 0.00 1.82
2135 2382 3.710724 TGGAAATTGGGAGATGCATTGA 58.289 40.909 0.00 0.00 0.00 2.57
2149 2396 7.173735 GGAGATGCATTGAAAGTTTCCAAAAAT 59.826 33.333 13.01 3.45 0.00 1.82
2158 2405 9.442047 TTGAAAGTTTCCAAAAATTAAGCTTCA 57.558 25.926 13.01 0.00 0.00 3.02
2168 2415 8.404765 CCAAAAATTAAGCTTCAACCAACATTT 58.595 29.630 0.00 0.00 0.00 2.32
2184 2431 6.325286 ACCAACATTTAACAGTGTATTTGGGT 59.675 34.615 15.92 4.12 31.25 4.51
2228 2475 4.286549 TCCTCATTTTCTGGGTACGGTTTA 59.713 41.667 0.00 0.00 0.00 2.01
2233 2480 4.914177 TTTCTGGGTACGGTTTAGGATT 57.086 40.909 0.00 0.00 0.00 3.01
2238 2485 4.325972 TGGGTACGGTTTAGGATTGTTTC 58.674 43.478 0.00 0.00 0.00 2.78
2239 2486 4.202440 TGGGTACGGTTTAGGATTGTTTCA 60.202 41.667 0.00 0.00 0.00 2.69
2240 2487 4.154737 GGGTACGGTTTAGGATTGTTTCAC 59.845 45.833 0.00 0.00 0.00 3.18
2242 2489 5.121298 GGTACGGTTTAGGATTGTTTCACTC 59.879 44.000 0.00 0.00 0.00 3.51
2318 2621 8.277018 GCTTAGTCTAGTCTTTTGAGAACAAAC 58.723 37.037 0.00 0.00 44.22 2.93
2397 2700 1.133407 CTGGGAGCGTCTACAGTTCTC 59.867 57.143 0.00 0.00 0.00 2.87
2436 2739 0.039618 TCCTTGTTGGGCCAATCTCC 59.960 55.000 23.95 10.06 36.20 3.71
2510 3177 4.022589 CCTAATGCCAAATATGCACCTGAG 60.023 45.833 0.00 0.00 42.38 3.35
2523 3190 1.074566 CACCTGAGAAAGCTTTCCCCT 59.925 52.381 30.83 16.24 37.92 4.79
2525 3192 2.165998 CCTGAGAAAGCTTTCCCCTTG 58.834 52.381 30.83 17.97 37.92 3.61
2526 3193 1.543358 CTGAGAAAGCTTTCCCCTTGC 59.457 52.381 30.83 16.01 37.92 4.01
2527 3194 0.891373 GAGAAAGCTTTCCCCTTGCC 59.109 55.000 30.83 8.67 37.92 4.52
2528 3195 0.484655 AGAAAGCTTTCCCCTTGCCT 59.515 50.000 30.83 11.01 37.92 4.75
2529 3196 0.891373 GAAAGCTTTCCCCTTGCCTC 59.109 55.000 25.80 0.00 0.00 4.70
2530 3197 0.542938 AAAGCTTTCCCCTTGCCTCC 60.543 55.000 5.69 0.00 0.00 4.30
2531 3198 2.363018 GCTTTCCCCTTGCCTCCC 60.363 66.667 0.00 0.00 0.00 4.30
2532 3199 2.923910 GCTTTCCCCTTGCCTCCCT 61.924 63.158 0.00 0.00 0.00 4.20
2533 3200 1.776969 CTTTCCCCTTGCCTCCCTT 59.223 57.895 0.00 0.00 0.00 3.95
2534 3201 0.115152 CTTTCCCCTTGCCTCCCTTT 59.885 55.000 0.00 0.00 0.00 3.11
2535 3202 0.114364 TTTCCCCTTGCCTCCCTTTC 59.886 55.000 0.00 0.00 0.00 2.62
2536 3203 0.776080 TTCCCCTTGCCTCCCTTTCT 60.776 55.000 0.00 0.00 0.00 2.52
2537 3204 0.776080 TCCCCTTGCCTCCCTTTCTT 60.776 55.000 0.00 0.00 0.00 2.52
2538 3205 0.323816 CCCCTTGCCTCCCTTTCTTC 60.324 60.000 0.00 0.00 0.00 2.87
2539 3206 0.701147 CCCTTGCCTCCCTTTCTTCT 59.299 55.000 0.00 0.00 0.00 2.85
2540 3207 1.916181 CCCTTGCCTCCCTTTCTTCTA 59.084 52.381 0.00 0.00 0.00 2.10
2541 3208 2.092699 CCCTTGCCTCCCTTTCTTCTAG 60.093 54.545 0.00 0.00 0.00 2.43
2542 3209 2.840651 CCTTGCCTCCCTTTCTTCTAGA 59.159 50.000 0.00 0.00 0.00 2.43
2543 3210 3.457749 CCTTGCCTCCCTTTCTTCTAGAT 59.542 47.826 0.00 0.00 0.00 1.98
2544 3211 4.080072 CCTTGCCTCCCTTTCTTCTAGATT 60.080 45.833 0.00 0.00 0.00 2.40
2545 3212 4.762289 TGCCTCCCTTTCTTCTAGATTC 57.238 45.455 0.00 0.00 0.00 2.52
2546 3213 4.366267 TGCCTCCCTTTCTTCTAGATTCT 58.634 43.478 0.00 0.00 0.00 2.40
2547 3214 5.529289 TGCCTCCCTTTCTTCTAGATTCTA 58.471 41.667 0.00 0.00 0.00 2.10
2548 3215 6.146760 TGCCTCCCTTTCTTCTAGATTCTAT 58.853 40.000 0.00 0.00 0.00 1.98
2549 3216 7.306013 TGCCTCCCTTTCTTCTAGATTCTATA 58.694 38.462 0.00 0.00 0.00 1.31
2550 3217 7.233757 TGCCTCCCTTTCTTCTAGATTCTATAC 59.766 40.741 0.00 0.00 0.00 1.47
2551 3218 7.453439 GCCTCCCTTTCTTCTAGATTCTATACT 59.547 40.741 0.00 0.00 0.00 2.12
2589 3256 7.225784 ACAAATATGTACCTGCATTGAACAA 57.774 32.000 0.00 0.00 38.24 2.83
2593 3260 3.282885 TGTACCTGCATTGAACAACACA 58.717 40.909 0.00 0.00 0.00 3.72
2611 3377 7.376615 ACAACACAACTCCTATGTACTCTTAC 58.623 38.462 0.00 0.00 0.00 2.34
2653 3419 7.776933 TCTCTTGATGTTATGAGCATGTAAC 57.223 36.000 0.00 0.00 0.00 2.50
2678 3444 9.797642 ACAGATTCCAATGCTACATTTGATATA 57.202 29.630 0.00 0.00 0.00 0.86
2730 3496 8.696175 GTTTAAGACCGTAAAACATTTCCAATG 58.304 33.333 0.00 0.00 34.12 2.82
2732 3498 3.920446 ACCGTAAAACATTTCCAATGCC 58.080 40.909 0.00 0.00 0.00 4.40
2743 3509 5.422970 ACATTTCCAATGCCACATTGATACT 59.577 36.000 19.24 1.95 0.00 2.12
2744 3510 5.999205 TTTCCAATGCCACATTGATACTT 57.001 34.783 19.24 0.00 0.00 2.24
2746 3512 3.953612 TCCAATGCCACATTGATACTTCC 59.046 43.478 19.24 0.00 0.00 3.46
2748 3514 4.037208 CCAATGCCACATTGATACTTCCTC 59.963 45.833 19.24 0.00 0.00 3.71
2749 3515 4.785346 ATGCCACATTGATACTTCCTCT 57.215 40.909 0.00 0.00 0.00 3.69
2750 3516 3.877559 TGCCACATTGATACTTCCTCTG 58.122 45.455 0.00 0.00 0.00 3.35
2751 3517 3.264193 TGCCACATTGATACTTCCTCTGT 59.736 43.478 0.00 0.00 0.00 3.41
2752 3518 4.263462 TGCCACATTGATACTTCCTCTGTT 60.263 41.667 0.00 0.00 0.00 3.16
2753 3519 4.333926 GCCACATTGATACTTCCTCTGTTC 59.666 45.833 0.00 0.00 0.00 3.18
2754 3520 5.491070 CCACATTGATACTTCCTCTGTTCA 58.509 41.667 0.00 0.00 0.00 3.18
2755 3521 5.352569 CCACATTGATACTTCCTCTGTTCAC 59.647 44.000 0.00 0.00 0.00 3.18
2756 3522 5.934043 CACATTGATACTTCCTCTGTTCACA 59.066 40.000 0.00 0.00 0.00 3.58
2757 3523 6.427853 CACATTGATACTTCCTCTGTTCACAA 59.572 38.462 0.00 0.00 0.00 3.33
2758 3524 6.998074 ACATTGATACTTCCTCTGTTCACAAA 59.002 34.615 0.00 0.00 0.00 2.83
2759 3525 7.667219 ACATTGATACTTCCTCTGTTCACAAAT 59.333 33.333 0.00 0.00 0.00 2.32
2760 3526 9.166173 CATTGATACTTCCTCTGTTCACAAATA 57.834 33.333 0.00 0.00 0.00 1.40
2761 3527 9.911788 ATTGATACTTCCTCTGTTCACAAATAT 57.088 29.630 0.00 0.00 0.00 1.28
2767 3533 9.388506 ACTTCCTCTGTTCACAAATATAAGATG 57.611 33.333 0.00 0.00 0.00 2.90
2768 3534 9.388506 CTTCCTCTGTTCACAAATATAAGATGT 57.611 33.333 0.00 0.00 0.00 3.06
2769 3535 9.739276 TTCCTCTGTTCACAAATATAAGATGTT 57.261 29.630 0.00 0.00 0.00 2.71
2770 3536 9.739276 TCCTCTGTTCACAAATATAAGATGTTT 57.261 29.630 0.00 0.00 0.00 2.83
2787 3553 8.553459 AAGATGTTTTAGAGTGACCATACAAG 57.447 34.615 0.00 0.00 0.00 3.16
2788 3554 7.680730 AGATGTTTTAGAGTGACCATACAAGT 58.319 34.615 0.00 0.00 0.00 3.16
2789 3555 7.819900 AGATGTTTTAGAGTGACCATACAAGTC 59.180 37.037 0.00 0.00 34.72 3.01
2790 3556 7.062749 TGTTTTAGAGTGACCATACAAGTCT 57.937 36.000 0.00 0.00 35.21 3.24
2791 3557 7.152645 TGTTTTAGAGTGACCATACAAGTCTC 58.847 38.462 0.00 0.00 35.21 3.36
2792 3558 7.015292 TGTTTTAGAGTGACCATACAAGTCTCT 59.985 37.037 0.00 0.00 39.95 3.10
2793 3559 8.521176 GTTTTAGAGTGACCATACAAGTCTCTA 58.479 37.037 0.00 0.00 38.00 2.43
2794 3560 8.645814 TTTAGAGTGACCATACAAGTCTCTAA 57.354 34.615 0.00 0.00 38.00 2.10
2795 3561 8.645814 TTAGAGTGACCATACAAGTCTCTAAA 57.354 34.615 0.00 0.00 38.89 1.85
2796 3562 7.540474 AGAGTGACCATACAAGTCTCTAAAA 57.460 36.000 0.00 0.00 38.00 1.52
2797 3563 7.379750 AGAGTGACCATACAAGTCTCTAAAAC 58.620 38.462 0.00 0.00 38.00 2.43
2798 3564 6.157211 AGTGACCATACAAGTCTCTAAAACG 58.843 40.000 0.00 0.00 36.57 3.60
2799 3565 5.924825 GTGACCATACAAGTCTCTAAAACGT 59.075 40.000 0.00 0.00 35.21 3.99
2800 3566 6.089150 GTGACCATACAAGTCTCTAAAACGTC 59.911 42.308 0.00 0.00 35.21 4.34
2801 3567 6.015688 TGACCATACAAGTCTCTAAAACGTCT 60.016 38.462 0.00 0.00 35.21 4.18
2802 3568 6.756221 ACCATACAAGTCTCTAAAACGTCTT 58.244 36.000 0.00 0.00 0.00 3.01
2803 3569 7.889469 ACCATACAAGTCTCTAAAACGTCTTA 58.111 34.615 0.00 0.00 0.00 2.10
2804 3570 8.529476 ACCATACAAGTCTCTAAAACGTCTTAT 58.471 33.333 0.00 0.00 0.00 1.73
2833 3599 9.733556 TTATGTACTTGTCACTTAAATGGATGT 57.266 29.630 0.00 0.00 0.00 3.06
2835 3601 9.905713 ATGTACTTGTCACTTAAATGGATGTAT 57.094 29.630 0.00 0.00 0.00 2.29
2836 3602 9.378551 TGTACTTGTCACTTAAATGGATGTATC 57.621 33.333 0.00 0.00 0.00 2.24
2837 3603 9.601217 GTACTTGTCACTTAAATGGATGTATCT 57.399 33.333 0.00 0.00 0.00 1.98
2838 3604 8.498054 ACTTGTCACTTAAATGGATGTATCTG 57.502 34.615 0.00 0.00 0.00 2.90
2839 3605 7.554118 ACTTGTCACTTAAATGGATGTATCTGG 59.446 37.037 0.00 0.00 0.00 3.86
2840 3606 5.822519 TGTCACTTAAATGGATGTATCTGGC 59.177 40.000 0.00 0.00 0.00 4.85
2841 3607 5.822519 GTCACTTAAATGGATGTATCTGGCA 59.177 40.000 0.00 0.00 0.00 4.92
2842 3608 5.822519 TCACTTAAATGGATGTATCTGGCAC 59.177 40.000 0.00 0.00 0.00 5.01
2843 3609 5.824624 CACTTAAATGGATGTATCTGGCACT 59.175 40.000 0.00 0.00 0.00 4.40
2844 3610 6.992123 CACTTAAATGGATGTATCTGGCACTA 59.008 38.462 0.00 0.00 0.00 2.74
2845 3611 7.498900 CACTTAAATGGATGTATCTGGCACTAA 59.501 37.037 0.00 0.00 0.00 2.24
2846 3612 8.052748 ACTTAAATGGATGTATCTGGCACTAAA 58.947 33.333 0.00 0.00 0.00 1.85
2847 3613 8.815565 TTAAATGGATGTATCTGGCACTAAAA 57.184 30.769 0.00 0.00 0.00 1.52
2848 3614 7.902920 AAATGGATGTATCTGGCACTAAAAT 57.097 32.000 0.00 0.00 0.00 1.82
2849 3615 8.995027 AAATGGATGTATCTGGCACTAAAATA 57.005 30.769 0.00 0.00 0.00 1.40
2850 3616 7.986085 ATGGATGTATCTGGCACTAAAATAC 57.014 36.000 0.00 0.00 0.00 1.89
2851 3617 6.894682 TGGATGTATCTGGCACTAAAATACA 58.105 36.000 0.00 0.00 37.26 2.29
2852 3618 7.517320 TGGATGTATCTGGCACTAAAATACAT 58.483 34.615 6.12 6.12 42.96 2.29
2854 3620 8.839310 GATGTATCTGGCACTAAAATACATCT 57.161 34.615 19.24 0.00 46.74 2.90
2855 3621 9.929180 GATGTATCTGGCACTAAAATACATCTA 57.071 33.333 19.24 0.00 46.74 1.98
2856 3622 9.935241 ATGTATCTGGCACTAAAATACATCTAG 57.065 33.333 0.00 0.00 38.51 2.43
2857 3623 9.143155 TGTATCTGGCACTAAAATACATCTAGA 57.857 33.333 0.00 0.00 30.13 2.43
2861 3627 9.143155 TCTGGCACTAAAATACATCTAGATACA 57.857 33.333 4.54 0.00 0.00 2.29
2862 3628 9.935241 CTGGCACTAAAATACATCTAGATACAT 57.065 33.333 4.54 0.00 0.00 2.29
2863 3629 9.929180 TGGCACTAAAATACATCTAGATACATC 57.071 33.333 4.54 0.00 0.00 3.06
2864 3630 9.372369 GGCACTAAAATACATCTAGATACATCC 57.628 37.037 4.54 0.00 0.00 3.51
2865 3631 9.077674 GCACTAAAATACATCTAGATACATCCG 57.922 37.037 4.54 0.00 0.00 4.18
2869 3635 8.744008 AAAATACATCTAGATACATCCGTTCG 57.256 34.615 4.54 0.00 0.00 3.95
2870 3636 7.683437 AATACATCTAGATACATCCGTTCGA 57.317 36.000 4.54 0.00 0.00 3.71
2871 3637 5.359716 ACATCTAGATACATCCGTTCGAC 57.640 43.478 4.54 0.00 0.00 4.20
2872 3638 5.064558 ACATCTAGATACATCCGTTCGACT 58.935 41.667 4.54 0.00 0.00 4.18
2873 3639 5.049336 ACATCTAGATACATCCGTTCGACTG 60.049 44.000 4.54 0.00 0.00 3.51
2874 3640 4.449131 TCTAGATACATCCGTTCGACTGT 58.551 43.478 0.00 0.01 0.00 3.55
2875 3641 4.880120 TCTAGATACATCCGTTCGACTGTT 59.120 41.667 0.00 0.00 0.00 3.16
2876 3642 4.451629 AGATACATCCGTTCGACTGTTT 57.548 40.909 0.00 0.00 0.00 2.83
2877 3643 4.174009 AGATACATCCGTTCGACTGTTTG 58.826 43.478 0.00 0.00 0.00 2.93
2878 3644 2.519377 ACATCCGTTCGACTGTTTGA 57.481 45.000 0.00 0.00 0.00 2.69
2879 3645 2.404215 ACATCCGTTCGACTGTTTGAG 58.596 47.619 0.00 0.00 0.00 3.02
2880 3646 1.126846 CATCCGTTCGACTGTTTGAGC 59.873 52.381 0.00 0.00 0.00 4.26
2881 3647 0.937699 TCCGTTCGACTGTTTGAGCG 60.938 55.000 11.33 11.33 39.06 5.03
2882 3648 0.937699 CCGTTCGACTGTTTGAGCGA 60.938 55.000 17.15 3.65 41.20 4.93
2883 3649 0.158928 CGTTCGACTGTTTGAGCGAC 59.841 55.000 12.44 0.00 41.20 5.19
2884 3650 1.205657 GTTCGACTGTTTGAGCGACA 58.794 50.000 0.00 0.00 32.35 4.35
2885 3651 1.591158 GTTCGACTGTTTGAGCGACAA 59.409 47.619 0.00 0.00 36.65 3.18
2886 3652 1.487482 TCGACTGTTTGAGCGACAAG 58.513 50.000 0.00 0.00 39.77 3.16
2887 3653 1.202371 TCGACTGTTTGAGCGACAAGT 60.202 47.619 0.00 0.00 39.77 3.16
2888 3654 2.033675 TCGACTGTTTGAGCGACAAGTA 59.966 45.455 0.00 0.00 39.77 2.24
2889 3655 2.792674 CGACTGTTTGAGCGACAAGTAA 59.207 45.455 0.00 0.00 39.77 2.24
2890 3656 3.428870 CGACTGTTTGAGCGACAAGTAAT 59.571 43.478 0.00 0.00 39.77 1.89
2891 3657 4.619760 CGACTGTTTGAGCGACAAGTAATA 59.380 41.667 0.00 0.00 39.77 0.98
2892 3658 5.118050 CGACTGTTTGAGCGACAAGTAATAA 59.882 40.000 0.00 0.00 39.77 1.40
2893 3659 6.467723 ACTGTTTGAGCGACAAGTAATAAG 57.532 37.500 0.00 0.00 39.77 1.73
2894 3660 5.408604 ACTGTTTGAGCGACAAGTAATAAGG 59.591 40.000 0.00 0.00 39.77 2.69
2895 3661 5.543714 TGTTTGAGCGACAAGTAATAAGGA 58.456 37.500 0.00 0.00 39.77 3.36
2896 3662 6.170506 TGTTTGAGCGACAAGTAATAAGGAT 58.829 36.000 0.00 0.00 39.77 3.24
2897 3663 6.653320 TGTTTGAGCGACAAGTAATAAGGATT 59.347 34.615 0.00 0.00 39.77 3.01
2898 3664 6.662414 TTGAGCGACAAGTAATAAGGATTG 57.338 37.500 0.00 0.00 34.20 2.67
2899 3665 5.116180 TGAGCGACAAGTAATAAGGATTGG 58.884 41.667 0.00 0.00 0.00 3.16
2900 3666 5.105106 TGAGCGACAAGTAATAAGGATTGGA 60.105 40.000 0.00 0.00 0.00 3.53
2901 3667 5.360591 AGCGACAAGTAATAAGGATTGGAG 58.639 41.667 0.00 0.00 0.00 3.86
2902 3668 4.511826 GCGACAAGTAATAAGGATTGGAGG 59.488 45.833 0.00 0.00 0.00 4.30
2903 3669 5.057149 CGACAAGTAATAAGGATTGGAGGG 58.943 45.833 0.00 0.00 0.00 4.30
2904 3670 5.163343 CGACAAGTAATAAGGATTGGAGGGA 60.163 44.000 0.00 0.00 0.00 4.20
2905 3671 6.253946 ACAAGTAATAAGGATTGGAGGGAG 57.746 41.667 0.00 0.00 0.00 4.30
2942 3708 2.286559 CGTCTAAGATCACGCCGCG 61.287 63.158 12.14 12.14 0.00 6.46
2958 3724 2.193536 GCGGCAGGTTTCAAGTGGT 61.194 57.895 0.00 0.00 0.00 4.16
2959 3725 1.654220 CGGCAGGTTTCAAGTGGTG 59.346 57.895 0.00 0.00 0.00 4.17
2964 3730 1.888512 CAGGTTTCAAGTGGTGGGATG 59.111 52.381 0.00 0.00 0.00 3.51
2975 3741 5.982890 AGTGGTGGGATGTTTGAAAATAG 57.017 39.130 0.00 0.00 0.00 1.73
3037 3804 2.892852 TCCAATCTGGCAAAGGTGAAAG 59.107 45.455 0.00 0.00 37.47 2.62
3062 3829 6.818233 ACAAAAACATAACGGGGTTAAATGT 58.182 32.000 0.00 0.00 31.56 2.71
3076 3843 6.348132 GGGGTTAAATGTTGTGCTAATTTTGC 60.348 38.462 0.00 0.00 0.00 3.68
3079 3846 4.996062 AATGTTGTGCTAATTTTGCAGC 57.004 36.364 5.76 0.00 41.41 5.25
3081 3848 3.641648 TGTTGTGCTAATTTTGCAGCTC 58.358 40.909 5.76 0.51 41.41 4.09
3087 3854 2.478539 GCTAATTTTGCAGCTCGAAGGG 60.479 50.000 0.00 0.00 34.86 3.95
3165 3932 5.772521 CTTGAATTCACCAAACTAAGTGGG 58.227 41.667 7.89 0.00 40.75 4.61
3254 4021 1.132453 TGACGATGAGGATGACGACAC 59.868 52.381 0.00 0.00 0.00 3.67
3255 4022 1.132453 GACGATGAGGATGACGACACA 59.868 52.381 0.00 0.00 0.00 3.72
3271 4038 1.549170 ACACAGTAAGACCCGACCATC 59.451 52.381 0.00 0.00 0.00 3.51
3275 4042 3.288964 CAGTAAGACCCGACCATCTAGT 58.711 50.000 0.00 0.00 0.00 2.57
3276 4043 4.080129 ACAGTAAGACCCGACCATCTAGTA 60.080 45.833 0.00 0.00 0.00 1.82
3277 4044 5.071370 CAGTAAGACCCGACCATCTAGTAT 58.929 45.833 0.00 0.00 0.00 2.12
3306 4073 6.974965 AGATCACTCAATTCAAAAGTTGGTC 58.025 36.000 0.00 0.00 0.00 4.02
3346 4113 5.931441 GGATACATTCCAGCAGTACAATC 57.069 43.478 0.00 0.00 44.74 2.67
3357 4124 3.008375 AGCAGTACAATCAGGAGCTTGAA 59.992 43.478 0.00 0.00 0.00 2.69
4433 5287 1.913778 ATCAAACATCAGCAGTGGCA 58.086 45.000 0.00 0.00 44.61 4.92
4739 5593 5.829924 CCTCATCCATTAGTTGGTGCTTATT 59.170 40.000 0.00 0.00 46.52 1.40
4856 5718 4.338118 AGTGTGTCATGTTTGTGGTAAAGG 59.662 41.667 0.00 0.00 0.00 3.11
4892 5754 3.499338 TCATATAAAATGGGCAGGCAGG 58.501 45.455 0.00 0.00 0.00 4.85
5001 5926 2.035832 ACTTTTGCACATTGCTACACCC 59.964 45.455 0.00 0.00 45.31 4.61
5031 5956 6.588719 TTAATAAAAACAGTGCCAGCATCT 57.411 33.333 0.00 0.00 0.00 2.90
5095 6020 8.861033 ATGACAATGTTGAATGTACAATATGC 57.139 30.769 0.00 0.00 33.30 3.14
5325 6252 7.880105 TGCAACATACACATTCTGTATTCAAA 58.120 30.769 0.00 0.00 42.57 2.69
5360 6287 1.052287 GCGCGAAAAGGAAATGTGTG 58.948 50.000 12.10 0.00 0.00 3.82
5362 6289 2.043411 CGCGAAAAGGAAATGTGTGTG 58.957 47.619 0.00 0.00 0.00 3.82
5367 6294 5.163903 GCGAAAAGGAAATGTGTGTGTTTTT 60.164 36.000 0.00 0.00 0.00 1.94
5368 6295 6.035112 GCGAAAAGGAAATGTGTGTGTTTTTA 59.965 34.615 0.00 0.00 0.00 1.52
5370 6297 7.486551 CGAAAAGGAAATGTGTGTGTTTTTAGA 59.513 33.333 0.00 0.00 0.00 2.10
5396 6326 4.894784 AGCTAGAAAGATTTTGACGGACA 58.105 39.130 0.00 0.00 0.00 4.02
5469 6400 8.296713 GGTGTAAAAATAGAATGAGTGAAAGCA 58.703 33.333 0.00 0.00 0.00 3.91
5578 6509 4.524714 AGGGAGTAGGTTATCATGATCACG 59.475 45.833 12.53 0.00 0.00 4.35
5617 6548 7.155328 ACCATCTTTCTAGCATTATAACTCGG 58.845 38.462 0.00 0.00 0.00 4.63
5685 6616 7.222999 GCTATAATGGAAGATACGTAGATTGGC 59.777 40.741 0.08 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 0.622665 AGGCAAGCCTAACAGCTCAT 59.377 50.000 12.82 0.00 46.14 2.90
97 98 4.019771 AGCTCTAAGAAACAAGGAGGGAAG 60.020 45.833 0.00 0.00 0.00 3.46
105 106 7.715265 TCTGTTTACAGCTCTAAGAAACAAG 57.285 36.000 5.00 5.11 43.46 3.16
145 146 1.326852 CTCACATGCATCTCGCTGAAC 59.673 52.381 0.00 0.00 43.06 3.18
159 160 4.119442 ACGGAATTACTAACGCTCACAT 57.881 40.909 0.00 0.00 0.00 3.21
205 206 1.051812 CGGCCCAATATGAGGACTCT 58.948 55.000 0.00 0.00 0.00 3.24
228 229 5.706833 TCGCCATATCAATTGTGATTATGCT 59.293 36.000 5.13 0.00 42.03 3.79
236 237 7.435784 TCATTCAAAATCGCCATATCAATTGTG 59.564 33.333 5.13 0.00 0.00 3.33
239 240 8.945481 TTTCATTCAAAATCGCCATATCAATT 57.055 26.923 0.00 0.00 0.00 2.32
240 241 8.945481 TTTTCATTCAAAATCGCCATATCAAT 57.055 26.923 0.00 0.00 0.00 2.57
242 243 6.979817 CCTTTTCATTCAAAATCGCCATATCA 59.020 34.615 0.00 0.00 33.34 2.15
249 250 6.710692 AATGTCCTTTTCATTCAAAATCGC 57.289 33.333 0.00 0.00 33.34 4.58
258 259 5.543790 ACCCTGCTAAAATGTCCTTTTCATT 59.456 36.000 0.00 0.00 38.09 2.57
259 260 5.086621 ACCCTGCTAAAATGTCCTTTTCAT 58.913 37.500 0.00 0.00 38.09 2.57
266 267 6.524101 TTTATTGACCCTGCTAAAATGTCC 57.476 37.500 0.00 0.00 0.00 4.02
290 291 7.775561 GTCAATAGGACATTAGGACATCCTTTT 59.224 37.037 5.58 0.00 44.58 2.27
291 292 7.283329 GTCAATAGGACATTAGGACATCCTTT 58.717 38.462 5.58 0.00 44.58 3.11
292 293 6.831976 GTCAATAGGACATTAGGACATCCTT 58.168 40.000 5.58 0.00 44.58 3.36
293 294 6.426646 GTCAATAGGACATTAGGACATCCT 57.573 41.667 5.59 5.59 46.71 3.24
321 323 3.559242 GCTGCCTTCATATTGTGAGACTC 59.441 47.826 0.00 0.00 38.29 3.36
322 324 3.539604 GCTGCCTTCATATTGTGAGACT 58.460 45.455 0.00 0.00 38.29 3.24
326 328 2.804986 TGGCTGCCTTCATATTGTGA 57.195 45.000 21.03 0.00 34.25 3.58
330 332 8.776119 AGTCTATATATTGGCTGCCTTCATATT 58.224 33.333 21.03 11.14 0.00 1.28
338 340 4.383552 CCCAGAGTCTATATATTGGCTGCC 60.384 50.000 12.87 12.87 0.00 4.85
339 341 4.223923 ACCCAGAGTCTATATATTGGCTGC 59.776 45.833 6.00 0.00 0.00 5.25
342 344 6.428159 CACAAACCCAGAGTCTATATATTGGC 59.572 42.308 0.00 0.00 0.00 4.52
350 352 3.264193 TGATGCACAAACCCAGAGTCTAT 59.736 43.478 0.00 0.00 0.00 1.98
351 353 2.637382 TGATGCACAAACCCAGAGTCTA 59.363 45.455 0.00 0.00 0.00 2.59
353 355 1.537202 GTGATGCACAAACCCAGAGTC 59.463 52.381 0.00 0.00 34.08 3.36
357 359 1.000060 CAAGGTGATGCACAAACCCAG 60.000 52.381 9.98 1.27 35.86 4.45
360 362 1.039856 ACCAAGGTGATGCACAAACC 58.960 50.000 6.23 6.23 35.86 3.27
366 368 1.490490 GGAGGATACCAAGGTGATGCA 59.510 52.381 1.07 0.00 37.17 3.96
367 369 1.490490 TGGAGGATACCAAGGTGATGC 59.510 52.381 1.07 0.00 36.96 3.91
402 405 2.165030 CCAGTTTGGCAGCTAATCCAAG 59.835 50.000 12.25 4.30 42.62 3.61
431 435 0.389817 TCACGTGCAATTAGAGCGCT 60.390 50.000 11.27 11.27 40.20 5.92
471 475 6.803642 ACGGCCGTTCTCCTTTATATATATC 58.196 40.000 28.70 0.00 0.00 1.63
472 476 6.786967 ACGGCCGTTCTCCTTTATATATAT 57.213 37.500 28.70 0.00 0.00 0.86
473 477 6.594788 AACGGCCGTTCTCCTTTATATATA 57.405 37.500 36.96 0.00 32.09 0.86
486 492 0.595567 GGGAAACAAAACGGCCGTTC 60.596 55.000 41.09 27.83 37.35 3.95
530 558 3.270027 TGGAACAGGAATGAAGCATACG 58.730 45.455 0.00 0.00 0.00 3.06
549 577 4.994852 TCTTCTTTGACACCGATTTACTGG 59.005 41.667 0.00 0.00 0.00 4.00
584 612 8.526667 TCTCTGCTATAATCACATCTATACCC 57.473 38.462 0.00 0.00 0.00 3.69
622 650 8.028652 TGGTGAACCACATCTATTATGACATA 57.971 34.615 0.00 0.00 42.01 2.29
766 794 0.030504 CCAACTCACGTGCATGCAAA 59.969 50.000 24.58 7.55 0.00 3.68
838 868 0.322816 TTCAGATTCAGGGCTGCCAC 60.323 55.000 22.05 10.03 32.27 5.01
843 873 1.353694 ACAAGCTTCAGATTCAGGGCT 59.646 47.619 0.00 0.00 0.00 5.19
852 882 8.507249 GCTTCTCTTTAAATAACAAGCTTCAGA 58.493 33.333 0.00 0.00 33.50 3.27
985 1016 2.880890 GCTTCATCCTTGTGTCTGTTGT 59.119 45.455 0.00 0.00 0.00 3.32
986 1017 3.144506 AGCTTCATCCTTGTGTCTGTTG 58.855 45.455 0.00 0.00 0.00 3.33
987 1018 3.181451 TGAGCTTCATCCTTGTGTCTGTT 60.181 43.478 0.00 0.00 0.00 3.16
1077 1108 2.989253 TTGCCTCTCCTCGCGTCA 60.989 61.111 5.77 0.00 0.00 4.35
1324 1355 1.701847 AGATGAAGGCTGTGGACTTGT 59.298 47.619 0.00 0.00 41.58 3.16
1407 1438 2.280321 ACGTTAAACACCGCGCCT 60.280 55.556 0.00 0.00 0.00 5.52
1453 1484 5.313712 ACCAACCTTTGTATCGTCTGAAAT 58.686 37.500 0.00 0.00 0.00 2.17
1473 1504 1.074775 GGGGCAGTGATGTTGACCA 59.925 57.895 0.00 0.00 46.10 4.02
1480 1511 1.134907 GCAATTTGAGGGGCAGTGATG 60.135 52.381 0.00 0.00 0.00 3.07
1503 1534 8.475331 AGTTAGCGAATTTTCTCTCGATAAAA 57.525 30.769 4.04 0.00 44.55 1.52
1504 1535 8.380644 CAAGTTAGCGAATTTTCTCTCGATAAA 58.619 33.333 4.04 0.00 44.55 1.40
1505 1536 7.544566 ACAAGTTAGCGAATTTTCTCTCGATAA 59.455 33.333 0.00 0.00 41.90 1.75
1506 1537 7.009265 CACAAGTTAGCGAATTTTCTCTCGATA 59.991 37.037 0.00 0.00 37.23 2.92
1507 1538 5.869888 ACAAGTTAGCGAATTTTCTCTCGAT 59.130 36.000 0.00 0.00 37.23 3.59
1508 1539 5.118664 CACAAGTTAGCGAATTTTCTCTCGA 59.881 40.000 0.00 0.00 37.23 4.04
1509 1540 5.107453 ACACAAGTTAGCGAATTTTCTCTCG 60.107 40.000 0.00 0.00 38.11 4.04
1510 1541 6.229561 ACACAAGTTAGCGAATTTTCTCTC 57.770 37.500 0.00 0.00 0.00 3.20
1511 1542 6.128526 GCTACACAAGTTAGCGAATTTTCTCT 60.129 38.462 0.00 0.00 0.00 3.10
1512 1543 6.016111 GCTACACAAGTTAGCGAATTTTCTC 58.984 40.000 0.00 0.00 0.00 2.87
1513 1544 5.468746 TGCTACACAAGTTAGCGAATTTTCT 59.531 36.000 0.00 0.00 39.53 2.52
1514 1545 5.685841 TGCTACACAAGTTAGCGAATTTTC 58.314 37.500 0.00 0.00 39.53 2.29
1515 1546 5.682943 TGCTACACAAGTTAGCGAATTTT 57.317 34.783 0.00 0.00 39.53 1.82
1516 1547 5.411361 TGATGCTACACAAGTTAGCGAATTT 59.589 36.000 0.00 0.00 39.53 1.82
1517 1548 4.935205 TGATGCTACACAAGTTAGCGAATT 59.065 37.500 0.00 0.00 39.53 2.17
1518 1549 4.503910 TGATGCTACACAAGTTAGCGAAT 58.496 39.130 0.00 0.00 39.53 3.34
1554 1585 4.460382 GGAATTGGCAGTGAGAATTTCTGA 59.540 41.667 3.03 0.00 0.00 3.27
1586 1617 1.453745 ATGCGTGGGTAATGGGCAG 60.454 57.895 0.00 0.00 37.01 4.85
1590 1621 3.250762 CAGTAATCATGCGTGGGTAATGG 59.749 47.826 5.98 0.00 0.00 3.16
1595 1626 1.406887 GGACAGTAATCATGCGTGGGT 60.407 52.381 5.98 0.00 0.00 4.51
1598 1629 4.620982 TCATAGGACAGTAATCATGCGTG 58.379 43.478 0.00 0.00 0.00 5.34
1599 1630 4.937201 TCATAGGACAGTAATCATGCGT 57.063 40.909 0.00 0.00 0.00 5.24
1600 1631 4.867047 GGATCATAGGACAGTAATCATGCG 59.133 45.833 0.00 0.00 0.00 4.73
1601 1632 5.798132 TGGATCATAGGACAGTAATCATGC 58.202 41.667 0.00 0.00 0.00 4.06
1602 1633 7.618137 TCATGGATCATAGGACAGTAATCATG 58.382 38.462 0.00 0.00 0.00 3.07
1603 1634 7.803487 TCATGGATCATAGGACAGTAATCAT 57.197 36.000 0.00 0.00 0.00 2.45
1604 1635 7.455638 TGATCATGGATCATAGGACAGTAATCA 59.544 37.037 4.86 0.00 43.11 2.57
1605 1636 7.845037 TGATCATGGATCATAGGACAGTAATC 58.155 38.462 4.86 0.00 43.11 1.75
1606 1637 7.803487 TGATCATGGATCATAGGACAGTAAT 57.197 36.000 4.86 0.00 43.11 1.89
1626 1830 5.681337 TCATGTGAGAGTAGTCGATGATC 57.319 43.478 0.00 0.00 0.00 2.92
1639 1843 3.008266 TCTGCACTGGAAATCATGTGAGA 59.992 43.478 8.52 6.32 32.72 3.27
1688 1892 6.999950 TGCAAATACTGACTACAGAAAGGTA 58.000 36.000 0.00 0.00 46.03 3.08
1728 1932 8.952979 CAAAAAGAAACAAATAAAATTTCCGGC 58.047 29.630 0.00 0.00 33.64 6.13
1743 1947 6.154363 AGGACAGAACAATCCAAAAAGAAACA 59.846 34.615 0.00 0.00 37.47 2.83
1748 1952 5.979517 GTGAAGGACAGAACAATCCAAAAAG 59.020 40.000 0.00 0.00 37.47 2.27
1766 1970 2.849942 TGAAGTGTGGACATGTGAAGG 58.150 47.619 1.15 0.00 0.00 3.46
1801 2005 2.514803 ACGTGATTCCTCAAAAAGGGG 58.485 47.619 0.00 0.00 46.23 4.79
1863 2098 8.893727 CGAACCCTGAATATATTCTTCAGTTTT 58.106 33.333 22.77 10.69 45.26 2.43
1864 2099 7.012421 GCGAACCCTGAATATATTCTTCAGTTT 59.988 37.037 22.77 10.97 45.26 2.66
1865 2100 6.483640 GCGAACCCTGAATATATTCTTCAGTT 59.516 38.462 22.77 19.19 45.26 3.16
1866 2101 5.992217 GCGAACCCTGAATATATTCTTCAGT 59.008 40.000 22.77 13.50 45.26 3.41
1867 2102 5.991606 TGCGAACCCTGAATATATTCTTCAG 59.008 40.000 22.77 14.95 45.94 3.02
1868 2103 5.924356 TGCGAACCCTGAATATATTCTTCA 58.076 37.500 22.77 6.99 37.67 3.02
1869 2104 6.706270 TCTTGCGAACCCTGAATATATTCTTC 59.294 38.462 22.77 16.92 37.67 2.87
1870 2105 6.591935 TCTTGCGAACCCTGAATATATTCTT 58.408 36.000 22.77 11.15 37.67 2.52
1871 2106 6.174720 TCTTGCGAACCCTGAATATATTCT 57.825 37.500 22.77 5.58 37.67 2.40
1872 2107 6.861065 TTCTTGCGAACCCTGAATATATTC 57.139 37.500 17.09 17.09 37.31 1.75
1873 2108 7.639113 TTTTCTTGCGAACCCTGAATATATT 57.361 32.000 0.00 0.00 0.00 1.28
1874 2109 7.122055 TGTTTTTCTTGCGAACCCTGAATATAT 59.878 33.333 0.00 0.00 0.00 0.86
1875 2110 6.431543 TGTTTTTCTTGCGAACCCTGAATATA 59.568 34.615 0.00 0.00 0.00 0.86
1876 2111 5.242838 TGTTTTTCTTGCGAACCCTGAATAT 59.757 36.000 0.00 0.00 0.00 1.28
1877 2112 4.580995 TGTTTTTCTTGCGAACCCTGAATA 59.419 37.500 0.00 0.00 0.00 1.75
1878 2113 3.383185 TGTTTTTCTTGCGAACCCTGAAT 59.617 39.130 0.00 0.00 0.00 2.57
1879 2114 2.755655 TGTTTTTCTTGCGAACCCTGAA 59.244 40.909 0.00 0.00 0.00 3.02
1913 2148 2.091899 CCCGCGTGCAAACAATATTTTG 59.908 45.455 4.92 0.00 39.15 2.44
1918 2153 0.952280 TTTCCCGCGTGCAAACAATA 59.048 45.000 4.92 0.00 0.00 1.90
1919 2154 0.596341 GTTTCCCGCGTGCAAACAAT 60.596 50.000 15.84 0.00 31.51 2.71
1921 2156 1.729470 ATGTTTCCCGCGTGCAAACA 61.729 50.000 22.10 22.10 42.60 2.83
1922 2157 0.238817 TATGTTTCCCGCGTGCAAAC 59.761 50.000 4.92 11.24 0.00 2.93
1932 2168 4.647424 TTTTGCCATCGATATGTTTCCC 57.353 40.909 0.00 0.00 0.00 3.97
1933 2169 6.018832 CCAATTTTTGCCATCGATATGTTTCC 60.019 38.462 0.00 0.00 0.00 3.13
2033 2272 8.579850 TGCCTCTACATAAAACATTTCAATCT 57.420 30.769 0.00 0.00 0.00 2.40
2036 2275 9.461312 AGTATGCCTCTACATAAAACATTTCAA 57.539 29.630 0.00 0.00 34.41 2.69
2037 2276 9.461312 AAGTATGCCTCTACATAAAACATTTCA 57.539 29.630 0.00 0.00 34.41 2.69
2079 2326 7.661027 ACCACCATTGATTTTTATTTTCTGGTG 59.339 33.333 10.20 10.20 46.71 4.17
2092 2339 7.915930 TCCATGAATTTAACCACCATTGATTT 58.084 30.769 0.00 0.00 0.00 2.17
2094 2341 7.493499 TTCCATGAATTTAACCACCATTGAT 57.507 32.000 0.00 0.00 0.00 2.57
2103 2350 7.181569 TCTCCCAATTTCCATGAATTTAACC 57.818 36.000 0.00 0.00 0.00 2.85
2110 2357 3.710724 TGCATCTCCCAATTTCCATGAA 58.289 40.909 0.00 0.00 0.00 2.57
2135 2382 8.673711 GGTTGAAGCTTAATTTTTGGAAACTTT 58.326 29.630 0.00 0.00 0.00 2.66
2149 2396 7.704472 CACTGTTAAATGTTGGTTGAAGCTTAA 59.296 33.333 0.00 0.00 0.00 1.85
2158 2405 7.147637 ACCCAAATACACTGTTAAATGTTGGTT 60.148 33.333 0.00 0.00 0.00 3.67
2168 2415 8.294954 TGAAAAGAAACCCAAATACACTGTTA 57.705 30.769 0.00 0.00 0.00 2.41
2228 2475 3.485463 TTGTCGGAGTGAAACAATCCT 57.515 42.857 14.54 0.00 45.13 3.24
2233 2480 2.712709 TGGTTTTGTCGGAGTGAAACA 58.287 42.857 10.84 0.00 41.43 2.83
2238 2485 2.356135 CCCTATGGTTTTGTCGGAGTG 58.644 52.381 0.00 0.00 0.00 3.51
2239 2486 1.280998 CCCCTATGGTTTTGTCGGAGT 59.719 52.381 0.00 0.00 0.00 3.85
2240 2487 2.017113 GCCCCTATGGTTTTGTCGGAG 61.017 57.143 0.00 0.00 36.04 4.63
2242 2489 0.322997 TGCCCCTATGGTTTTGTCGG 60.323 55.000 0.00 0.00 36.04 4.79
2277 2525 9.729281 ACTAGACTAAGCTAATCATAGTACTCC 57.271 37.037 0.00 0.00 30.11 3.85
2318 2621 7.263100 TGCATGCACACTAATTTATTAGAGG 57.737 36.000 18.46 9.36 41.72 3.69
2385 2688 4.634883 TCTGATGGTACGAGAACTGTAGAC 59.365 45.833 0.00 0.00 0.00 2.59
2436 2739 1.909700 TGCAGTAAGGCCCAGAAAAG 58.090 50.000 0.00 0.00 0.00 2.27
2502 3169 0.884514 GGGAAAGCTTTCTCAGGTGC 59.115 55.000 32.28 17.24 37.60 5.01
2503 3170 1.074566 AGGGGAAAGCTTTCTCAGGTG 59.925 52.381 34.09 0.00 39.44 4.00
2510 3177 0.891373 GAGGCAAGGGGAAAGCTTTC 59.109 55.000 27.68 27.68 36.46 2.62
2523 3190 4.785376 AGAATCTAGAAGAAAGGGAGGCAA 59.215 41.667 0.00 0.00 0.00 4.52
2525 3192 6.680148 ATAGAATCTAGAAGAAAGGGAGGC 57.320 41.667 0.00 0.00 0.00 4.70
2526 3193 8.950007 AGTATAGAATCTAGAAGAAAGGGAGG 57.050 38.462 0.00 0.00 0.00 4.30
2557 3224 9.627123 AATGCAGGTACATATTTGTATGTTAGT 57.373 29.630 6.41 0.00 40.35 2.24
2558 3225 9.882996 CAATGCAGGTACATATTTGTATGTTAG 57.117 33.333 6.41 0.00 40.35 2.34
2559 3226 9.620259 TCAATGCAGGTACATATTTGTATGTTA 57.380 29.630 6.41 0.00 40.35 2.41
2560 3227 8.518430 TCAATGCAGGTACATATTTGTATGTT 57.482 30.769 6.41 0.00 40.35 2.71
2561 3228 8.405531 GTTCAATGCAGGTACATATTTGTATGT 58.594 33.333 6.36 6.36 40.35 2.29
2562 3229 8.404765 TGTTCAATGCAGGTACATATTTGTATG 58.595 33.333 0.00 0.00 40.35 2.39
2563 3230 8.518430 TGTTCAATGCAGGTACATATTTGTAT 57.482 30.769 0.00 0.00 40.35 2.29
2564 3231 7.929941 TGTTCAATGCAGGTACATATTTGTA 57.070 32.000 0.00 0.00 37.28 2.41
2565 3232 6.832520 TGTTCAATGCAGGTACATATTTGT 57.167 33.333 0.00 0.00 39.98 2.83
2566 3233 7.062138 GTGTTGTTCAATGCAGGTACATATTTG 59.938 37.037 0.00 0.00 0.00 2.32
2567 3234 7.090173 GTGTTGTTCAATGCAGGTACATATTT 58.910 34.615 0.00 0.00 0.00 1.40
2568 3235 6.208402 TGTGTTGTTCAATGCAGGTACATATT 59.792 34.615 0.00 0.00 0.00 1.28
2569 3236 5.709631 TGTGTTGTTCAATGCAGGTACATAT 59.290 36.000 0.00 0.00 0.00 1.78
2570 3237 5.066593 TGTGTTGTTCAATGCAGGTACATA 58.933 37.500 0.00 0.00 0.00 2.29
2571 3238 3.888323 TGTGTTGTTCAATGCAGGTACAT 59.112 39.130 0.00 0.00 0.00 2.29
2572 3239 3.282885 TGTGTTGTTCAATGCAGGTACA 58.717 40.909 0.00 0.00 0.00 2.90
2573 3240 3.980646 TGTGTTGTTCAATGCAGGTAC 57.019 42.857 0.00 0.00 0.00 3.34
2589 3256 7.719871 ATGTAAGAGTACATAGGAGTTGTGT 57.280 36.000 0.00 0.00 46.91 3.72
2611 3377 6.489022 TCAAGAGATCATTTTCCCTGCATATG 59.511 38.462 0.00 0.00 0.00 1.78
2691 3457 6.492254 ACGGTCTTAAACATGAAAACACTTC 58.508 36.000 0.00 0.00 0.00 3.01
2730 3496 3.878778 ACAGAGGAAGTATCAATGTGGC 58.121 45.455 0.00 0.00 0.00 5.01
2732 3498 5.934043 TGTGAACAGAGGAAGTATCAATGTG 59.066 40.000 0.00 0.00 0.00 3.21
2743 3509 9.739276 AACATCTTATATTTGTGAACAGAGGAA 57.261 29.630 0.00 0.00 0.00 3.36
2744 3510 9.739276 AAACATCTTATATTTGTGAACAGAGGA 57.261 29.630 0.00 0.00 0.00 3.71
2761 3527 9.653287 CTTGTATGGTCACTCTAAAACATCTTA 57.347 33.333 0.00 0.00 0.00 2.10
2762 3528 8.157476 ACTTGTATGGTCACTCTAAAACATCTT 58.843 33.333 0.00 0.00 0.00 2.40
2763 3529 7.680730 ACTTGTATGGTCACTCTAAAACATCT 58.319 34.615 0.00 0.00 0.00 2.90
2764 3530 7.819900 AGACTTGTATGGTCACTCTAAAACATC 59.180 37.037 0.00 0.00 36.29 3.06
2765 3531 7.680730 AGACTTGTATGGTCACTCTAAAACAT 58.319 34.615 0.00 0.00 36.29 2.71
2766 3532 7.015292 AGAGACTTGTATGGTCACTCTAAAACA 59.985 37.037 0.00 0.00 36.29 2.83
2767 3533 7.379750 AGAGACTTGTATGGTCACTCTAAAAC 58.620 38.462 0.00 0.00 36.29 2.43
2768 3534 7.540474 AGAGACTTGTATGGTCACTCTAAAA 57.460 36.000 0.00 0.00 36.29 1.52
2769 3535 8.645814 TTAGAGACTTGTATGGTCACTCTAAA 57.354 34.615 0.00 0.00 36.40 1.85
2770 3536 8.645814 TTTAGAGACTTGTATGGTCACTCTAA 57.354 34.615 0.00 0.00 36.40 2.10
2771 3537 8.521176 GTTTTAGAGACTTGTATGGTCACTCTA 58.479 37.037 0.00 0.00 36.40 2.43
2772 3538 7.379750 GTTTTAGAGACTTGTATGGTCACTCT 58.620 38.462 0.00 0.00 36.40 3.24
2773 3539 6.308282 CGTTTTAGAGACTTGTATGGTCACTC 59.692 42.308 0.00 0.00 36.40 3.51
2774 3540 6.157211 CGTTTTAGAGACTTGTATGGTCACT 58.843 40.000 0.00 0.00 38.03 3.41
2775 3541 5.924825 ACGTTTTAGAGACTTGTATGGTCAC 59.075 40.000 0.00 0.00 36.29 3.67
2776 3542 6.015688 AGACGTTTTAGAGACTTGTATGGTCA 60.016 38.462 0.00 0.00 36.29 4.02
2777 3543 6.388278 AGACGTTTTAGAGACTTGTATGGTC 58.612 40.000 0.00 0.00 0.00 4.02
2778 3544 6.342338 AGACGTTTTAGAGACTTGTATGGT 57.658 37.500 0.00 0.00 0.00 3.55
2779 3545 8.928270 ATAAGACGTTTTAGAGACTTGTATGG 57.072 34.615 4.75 0.00 0.00 2.74
2807 3573 9.733556 ACATCCATTTAAGTGACAAGTACATAA 57.266 29.630 0.00 0.00 0.00 1.90
2809 3575 9.905713 ATACATCCATTTAAGTGACAAGTACAT 57.094 29.630 0.00 0.00 0.00 2.29
2810 3576 9.378551 GATACATCCATTTAAGTGACAAGTACA 57.621 33.333 0.00 0.00 0.00 2.90
2811 3577 9.601217 AGATACATCCATTTAAGTGACAAGTAC 57.399 33.333 0.00 0.00 0.00 2.73
2812 3578 9.599866 CAGATACATCCATTTAAGTGACAAGTA 57.400 33.333 0.00 0.00 0.00 2.24
2813 3579 7.554118 CCAGATACATCCATTTAAGTGACAAGT 59.446 37.037 0.00 0.00 0.00 3.16
2814 3580 7.467811 GCCAGATACATCCATTTAAGTGACAAG 60.468 40.741 0.00 0.00 0.00 3.16
2815 3581 6.318648 GCCAGATACATCCATTTAAGTGACAA 59.681 38.462 0.00 0.00 0.00 3.18
2816 3582 5.822519 GCCAGATACATCCATTTAAGTGACA 59.177 40.000 0.00 0.00 0.00 3.58
2817 3583 5.822519 TGCCAGATACATCCATTTAAGTGAC 59.177 40.000 0.00 0.00 0.00 3.67
2818 3584 5.822519 GTGCCAGATACATCCATTTAAGTGA 59.177 40.000 0.00 0.00 0.00 3.41
2819 3585 5.824624 AGTGCCAGATACATCCATTTAAGTG 59.175 40.000 0.00 0.00 0.00 3.16
2820 3586 6.006275 AGTGCCAGATACATCCATTTAAGT 57.994 37.500 0.00 0.00 0.00 2.24
2821 3587 8.450578 TTTAGTGCCAGATACATCCATTTAAG 57.549 34.615 0.00 0.00 0.00 1.85
2822 3588 8.815565 TTTTAGTGCCAGATACATCCATTTAA 57.184 30.769 0.00 0.00 0.00 1.52
2823 3589 8.995027 ATTTTAGTGCCAGATACATCCATTTA 57.005 30.769 0.00 0.00 0.00 1.40
2824 3590 7.902920 ATTTTAGTGCCAGATACATCCATTT 57.097 32.000 0.00 0.00 0.00 2.32
2825 3591 7.998383 TGTATTTTAGTGCCAGATACATCCATT 59.002 33.333 0.00 0.00 30.60 3.16
2826 3592 7.517320 TGTATTTTAGTGCCAGATACATCCAT 58.483 34.615 0.00 0.00 30.60 3.41
2827 3593 6.894682 TGTATTTTAGTGCCAGATACATCCA 58.105 36.000 0.00 0.00 30.60 3.41
2828 3594 7.986085 ATGTATTTTAGTGCCAGATACATCC 57.014 36.000 0.00 0.00 38.75 3.51
2830 3596 9.935241 CTAGATGTATTTTAGTGCCAGATACAT 57.065 33.333 6.93 6.93 43.08 2.29
2831 3597 9.143155 TCTAGATGTATTTTAGTGCCAGATACA 57.857 33.333 0.00 0.00 37.53 2.29
2835 3601 9.143155 TGTATCTAGATGTATTTTAGTGCCAGA 57.857 33.333 15.79 0.00 0.00 3.86
2836 3602 9.935241 ATGTATCTAGATGTATTTTAGTGCCAG 57.065 33.333 15.79 0.00 0.00 4.85
2837 3603 9.929180 GATGTATCTAGATGTATTTTAGTGCCA 57.071 33.333 15.79 0.00 0.00 4.92
2838 3604 9.372369 GGATGTATCTAGATGTATTTTAGTGCC 57.628 37.037 15.79 2.25 0.00 5.01
2839 3605 9.077674 CGGATGTATCTAGATGTATTTTAGTGC 57.922 37.037 15.79 0.00 0.00 4.40
2843 3609 9.836076 CGAACGGATGTATCTAGATGTATTTTA 57.164 33.333 15.79 0.00 0.00 1.52
2844 3610 8.573885 TCGAACGGATGTATCTAGATGTATTTT 58.426 33.333 15.79 4.88 0.00 1.82
2845 3611 8.021973 GTCGAACGGATGTATCTAGATGTATTT 58.978 37.037 15.79 1.74 0.00 1.40
2846 3612 7.390996 AGTCGAACGGATGTATCTAGATGTATT 59.609 37.037 15.79 0.43 0.00 1.89
2847 3613 6.879993 AGTCGAACGGATGTATCTAGATGTAT 59.120 38.462 15.79 9.11 0.00 2.29
2848 3614 6.147328 CAGTCGAACGGATGTATCTAGATGTA 59.853 42.308 15.79 4.44 0.00 2.29
2849 3615 5.049336 CAGTCGAACGGATGTATCTAGATGT 60.049 44.000 15.79 0.32 0.00 3.06
2850 3616 5.049336 ACAGTCGAACGGATGTATCTAGATG 60.049 44.000 15.79 0.00 0.00 2.90
2851 3617 5.064558 ACAGTCGAACGGATGTATCTAGAT 58.935 41.667 10.73 10.73 0.00 1.98
2852 3618 4.449131 ACAGTCGAACGGATGTATCTAGA 58.551 43.478 0.00 0.00 0.00 2.43
2853 3619 4.815040 ACAGTCGAACGGATGTATCTAG 57.185 45.455 0.00 0.00 0.00 2.43
2854 3620 5.124297 TCAAACAGTCGAACGGATGTATCTA 59.876 40.000 0.00 0.00 0.00 1.98
2855 3621 4.082408 TCAAACAGTCGAACGGATGTATCT 60.082 41.667 0.00 0.00 0.00 1.98
2856 3622 4.171005 TCAAACAGTCGAACGGATGTATC 58.829 43.478 0.00 0.00 0.00 2.24
2857 3623 4.174009 CTCAAACAGTCGAACGGATGTAT 58.826 43.478 0.00 0.00 0.00 2.29
2858 3624 3.571571 CTCAAACAGTCGAACGGATGTA 58.428 45.455 0.00 0.00 0.00 2.29
2859 3625 2.404215 CTCAAACAGTCGAACGGATGT 58.596 47.619 0.00 0.00 0.00 3.06
2860 3626 1.126846 GCTCAAACAGTCGAACGGATG 59.873 52.381 0.00 0.00 0.00 3.51
2861 3627 1.429463 GCTCAAACAGTCGAACGGAT 58.571 50.000 0.00 0.00 0.00 4.18
2862 3628 0.937699 CGCTCAAACAGTCGAACGGA 60.938 55.000 0.00 0.00 0.00 4.69
2863 3629 0.937699 TCGCTCAAACAGTCGAACGG 60.938 55.000 0.00 0.00 30.73 4.44
2864 3630 0.158928 GTCGCTCAAACAGTCGAACG 59.841 55.000 0.00 0.00 34.05 3.95
2865 3631 1.205657 TGTCGCTCAAACAGTCGAAC 58.794 50.000 0.00 0.00 34.05 3.95
2866 3632 1.858458 CTTGTCGCTCAAACAGTCGAA 59.142 47.619 0.00 0.00 35.48 3.71
2867 3633 1.202371 ACTTGTCGCTCAAACAGTCGA 60.202 47.619 0.00 0.00 35.48 4.20
2868 3634 1.209128 ACTTGTCGCTCAAACAGTCG 58.791 50.000 0.00 0.00 35.48 4.18
2869 3635 4.992381 ATTACTTGTCGCTCAAACAGTC 57.008 40.909 0.00 0.00 35.48 3.51
2870 3636 5.408604 CCTTATTACTTGTCGCTCAAACAGT 59.591 40.000 0.00 0.00 35.48 3.55
2871 3637 5.637810 TCCTTATTACTTGTCGCTCAAACAG 59.362 40.000 0.00 0.00 35.48 3.16
2872 3638 5.543714 TCCTTATTACTTGTCGCTCAAACA 58.456 37.500 0.00 0.00 35.48 2.83
2873 3639 6.663944 ATCCTTATTACTTGTCGCTCAAAC 57.336 37.500 0.00 0.00 35.48 2.93
2874 3640 6.093495 CCAATCCTTATTACTTGTCGCTCAAA 59.907 38.462 0.00 0.00 35.48 2.69
2875 3641 5.584649 CCAATCCTTATTACTTGTCGCTCAA 59.415 40.000 0.00 0.00 34.61 3.02
2876 3642 5.105106 TCCAATCCTTATTACTTGTCGCTCA 60.105 40.000 0.00 0.00 0.00 4.26
2877 3643 5.357257 TCCAATCCTTATTACTTGTCGCTC 58.643 41.667 0.00 0.00 0.00 5.03
2878 3644 5.353394 TCCAATCCTTATTACTTGTCGCT 57.647 39.130 0.00 0.00 0.00 4.93
2879 3645 4.511826 CCTCCAATCCTTATTACTTGTCGC 59.488 45.833 0.00 0.00 0.00 5.19
2880 3646 5.057149 CCCTCCAATCCTTATTACTTGTCG 58.943 45.833 0.00 0.00 0.00 4.35
2881 3647 6.126739 ACTCCCTCCAATCCTTATTACTTGTC 60.127 42.308 0.00 0.00 0.00 3.18
2882 3648 5.731678 ACTCCCTCCAATCCTTATTACTTGT 59.268 40.000 0.00 0.00 0.00 3.16
2883 3649 6.253946 ACTCCCTCCAATCCTTATTACTTG 57.746 41.667 0.00 0.00 0.00 3.16
2884 3650 8.582891 ATTACTCCCTCCAATCCTTATTACTT 57.417 34.615 0.00 0.00 0.00 2.24
2885 3651 8.582891 AATTACTCCCTCCAATCCTTATTACT 57.417 34.615 0.00 0.00 0.00 2.24
2917 3683 4.608951 GGCGTGATCTTAGACGTAGAAAT 58.391 43.478 5.37 0.00 37.89 2.17
2924 3690 2.286559 CGCGGCGTGATCTTAGACG 61.287 63.158 16.70 6.54 38.63 4.18
2942 3708 1.463553 CCCACCACTTGAAACCTGCC 61.464 60.000 0.00 0.00 0.00 4.85
2951 3717 4.399004 TTTTCAAACATCCCACCACTTG 57.601 40.909 0.00 0.00 0.00 3.16
2958 3724 9.487790 GTTTCATTTCTATTTTCAAACATCCCA 57.512 29.630 0.00 0.00 0.00 4.37
2959 3725 8.647226 CGTTTCATTTCTATTTTCAAACATCCC 58.353 33.333 0.00 0.00 0.00 3.85
3037 3804 6.924612 ACATTTAACCCCGTTATGTTTTTGTC 59.075 34.615 0.00 0.00 0.00 3.18
3062 3829 2.551887 TCGAGCTGCAAAATTAGCACAA 59.448 40.909 1.02 0.00 42.29 3.33
3076 3843 4.719997 GATCGTCCCTTCGAGCTG 57.280 61.111 0.00 0.00 43.00 4.24
3079 3846 1.001158 GGCTAAGATCGTCCCTTCGAG 60.001 57.143 0.00 0.00 43.00 4.04
3081 3848 0.032267 GGGCTAAGATCGTCCCTTCG 59.968 60.000 7.19 0.00 35.87 3.79
3087 3854 2.396590 TTGTTGGGGCTAAGATCGTC 57.603 50.000 0.00 0.00 0.00 4.20
3165 3932 3.193267 TGCCACTGCCTTGAATTGATAAC 59.807 43.478 0.00 0.00 36.33 1.89
3254 4021 3.288964 ACTAGATGGTCGGGTCTTACTG 58.711 50.000 0.00 0.00 0.00 2.74
3255 4022 3.666345 ACTAGATGGTCGGGTCTTACT 57.334 47.619 0.00 0.00 0.00 2.24
3283 4050 6.974965 AGACCAACTTTTGAATTGAGTGATC 58.025 36.000 0.00 0.00 0.00 2.92
3331 4098 2.355108 GCTCCTGATTGTACTGCTGGAA 60.355 50.000 0.00 0.00 30.72 3.53
3346 4113 1.101331 GGCATCCTTTCAAGCTCCTG 58.899 55.000 0.00 0.00 0.00 3.86
3357 4124 1.541379 GTTTAACCCGTGGCATCCTT 58.459 50.000 0.00 0.00 0.00 3.36
3398 4165 6.378848 TGGTATACAGTACTGAATGTGCACTA 59.621 38.462 29.30 8.10 33.54 2.74
3934 4787 0.101579 TGCTTCGATACGATTCGCCA 59.898 50.000 5.86 0.00 38.97 5.69
4433 5287 4.207955 TCTCATACTGAACGCCTGATACT 58.792 43.478 0.00 0.00 0.00 2.12
4739 5593 2.687370 CATCACAACGACCACTCATGA 58.313 47.619 0.00 0.00 0.00 3.07
4828 5690 3.110358 CACAAACATGACACACTTGCTG 58.890 45.455 0.00 0.00 0.00 4.41
4829 5691 2.099592 CCACAAACATGACACACTTGCT 59.900 45.455 0.00 0.00 0.00 3.91
4892 5754 6.609237 TTTCAGCTCACACATATAATCTGC 57.391 37.500 0.00 0.00 0.00 4.26
5001 5926 9.503427 GCTGGCACTGTTTTTATTAAATAGTAG 57.497 33.333 0.00 0.00 0.00 2.57
5026 5951 4.503741 TTTGCTTCACCTTTACAGATGC 57.496 40.909 0.00 0.00 34.25 3.91
5031 5956 6.038382 TCGTTAACATTTGCTTCACCTTTACA 59.962 34.615 6.39 0.00 0.00 2.41
5247 6174 7.066284 AGCTGGATGTATTGTACTTGTTCATTC 59.934 37.037 0.00 0.00 0.00 2.67
5325 6252 1.915614 GCGCTGCACTGCTACATGTT 61.916 55.000 2.30 0.00 0.00 2.71
5367 6294 9.314321 CCGTCAAAATCTTTCTAGCTAAATCTA 57.686 33.333 0.00 0.00 0.00 1.98
5368 6295 8.041323 TCCGTCAAAATCTTTCTAGCTAAATCT 58.959 33.333 0.00 0.00 0.00 2.40
5370 6297 7.606456 TGTCCGTCAAAATCTTTCTAGCTAAAT 59.394 33.333 0.00 0.00 0.00 1.40
5469 6400 9.739276 TCTCTGTCATGTTCTAATGGTTAATTT 57.261 29.630 0.00 0.00 0.00 1.82
5578 6509 9.455847 CTAGAAAGATGGTAAAAATGCTTATGC 57.544 33.333 0.00 0.00 40.20 3.14
5617 6548 5.921004 ATTCAAAGATAGCTGATTCTCGC 57.079 39.130 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.