Multiple sequence alignment - TraesCS3A01G225700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G225700 chr3A 100.000 5778 0 0 1 5778 423480236 423486013 0.000000e+00 10671.0
1 TraesCS3A01G225700 chr3A 93.333 60 4 0 2264 2323 218471178 218471119 7.970000e-14 89.8
2 TraesCS3A01G225700 chr3D 94.021 3295 137 38 2361 5632 305447941 305451198 0.000000e+00 4939.0
3 TraesCS3A01G225700 chr3D 92.967 1109 48 16 1285 2367 305446802 305447906 0.000000e+00 1589.0
4 TraesCS3A01G225700 chr3D 95.585 838 25 6 422 1247 305445964 305446801 0.000000e+00 1332.0
5 TraesCS3A01G225700 chr3B 91.737 3316 160 46 2361 5632 416284667 416281422 0.000000e+00 4501.0
6 TraesCS3A01G225700 chr3B 95.522 1965 64 16 422 2367 416286661 416284702 0.000000e+00 3120.0
7 TraesCS3A01G225700 chr3B 90.323 124 12 0 6 129 416458968 416458845 4.630000e-36 163.0
8 TraesCS3A01G225700 chr3B 88.182 110 12 1 2968 3077 752373320 752373428 4.700000e-26 130.0
9 TraesCS3A01G225700 chr4A 99.329 149 1 0 5630 5778 548781186 548781334 2.650000e-68 270.0
10 TraesCS3A01G225700 chr4A 97.987 149 3 0 5630 5778 80973128 80972980 5.740000e-65 259.0
11 TraesCS3A01G225700 chr4A 93.333 60 4 0 2265 2324 548568944 548569003 7.970000e-14 89.8
12 TraesCS3A01G225700 chr4A 94.737 57 3 0 2271 2327 599354217 599354273 7.970000e-14 89.8
13 TraesCS3A01G225700 chr4A 91.803 61 5 0 2264 2324 626382894 626382834 1.030000e-12 86.1
14 TraesCS3A01G225700 chr6D 98.658 149 2 0 5630 5778 309307322 309307470 1.230000e-66 265.0
15 TraesCS3A01G225700 chr7A 97.403 154 4 0 5625 5778 25310188 25310341 4.440000e-66 263.0
16 TraesCS3A01G225700 chr7A 97.368 152 4 0 5627 5778 125988625 125988474 5.740000e-65 259.0
17 TraesCS3A01G225700 chr7A 95.556 90 4 0 2988 3077 581374338 581374249 1.680000e-30 145.0
18 TraesCS3A01G225700 chr2B 96.250 160 6 0 5619 5778 99317411 99317570 4.440000e-66 263.0
19 TraesCS3A01G225700 chr2B 98.113 53 1 0 2271 2323 198998568 198998620 6.160000e-15 93.5
20 TraesCS3A01G225700 chr1D 97.368 152 4 0 5627 5778 459051261 459051412 5.740000e-65 259.0
21 TraesCS3A01G225700 chr1D 86.294 197 24 2 179 372 453967937 453968133 1.630000e-50 211.0
22 TraesCS3A01G225700 chr5A 94.611 167 5 3 5614 5778 613160777 613160941 7.430000e-64 255.0
23 TraesCS3A01G225700 chr5A 87.310 197 22 3 171 365 504722199 504722394 7.540000e-54 222.0
24 TraesCS3A01G225700 chr5A 88.043 92 11 0 2986 3077 699513175 699513084 6.120000e-20 110.0
25 TraesCS3A01G225700 chr2A 96.753 154 4 1 5625 5778 206138208 206138360 7.430000e-64 255.0
26 TraesCS3A01G225700 chr2A 88.060 201 20 4 174 371 761221854 761222053 9.680000e-58 235.0
27 TraesCS3A01G225700 chr2A 89.247 93 10 0 2986 3078 688628922 688628830 3.660000e-22 117.0
28 TraesCS3A01G225700 chr1B 88.670 203 20 3 174 374 349715602 349715803 1.610000e-60 244.0
29 TraesCS3A01G225700 chr1B 87.379 206 23 3 174 377 665505172 665504968 3.480000e-57 233.0
30 TraesCS3A01G225700 chr1B 85.354 198 25 3 179 372 624504983 624505180 9.820000e-48 202.0
31 TraesCS3A01G225700 chr5D 86.275 204 25 3 172 372 338953658 338953455 9.750000e-53 219.0
32 TraesCS3A01G225700 chr2D 85.024 207 29 2 170 374 556016328 556016122 5.870000e-50 209.0
33 TraesCS3A01G225700 chr1A 84.158 202 26 5 174 371 406619805 406619606 2.130000e-44 191.0
34 TraesCS3A01G225700 chr1A 94.545 55 3 0 2271 2325 359976046 359975992 1.030000e-12 86.1
35 TraesCS3A01G225700 chr4B 90.000 100 10 0 2986 3085 642195558 642195657 4.700000e-26 130.0
36 TraesCS3A01G225700 chr4B 96.491 57 2 0 2271 2327 7028521 7028465 1.710000e-15 95.3
37 TraesCS3A01G225700 chr7B 87.234 94 12 0 2986 3079 685247252 685247159 2.200000e-19 108.0
38 TraesCS3A01G225700 chr7B 83.000 100 15 2 2986 3084 452157761 452157663 7.970000e-14 89.8
39 TraesCS3A01G225700 chr7D 81.818 77 8 5 1843 1916 232929249 232929176 6.250000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G225700 chr3A 423480236 423486013 5777 False 10671.0 10671 100.0000 1 5778 1 chr3A.!!$F1 5777
1 TraesCS3A01G225700 chr3D 305445964 305451198 5234 False 2620.0 4939 94.1910 422 5632 3 chr3D.!!$F1 5210
2 TraesCS3A01G225700 chr3B 416281422 416286661 5239 True 3810.5 4501 93.6295 422 5632 2 chr3B.!!$R2 5210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 372 0.036671 CGTCTAAAAGAACCGGCCCT 60.037 55.000 0.00 0.00 0.00 5.19 F
382 383 0.252375 ACCGGCCCTTAGTTGTAGGA 60.252 55.000 0.00 0.00 34.56 2.94 F
383 384 0.906775 CCGGCCCTTAGTTGTAGGAA 59.093 55.000 0.00 0.00 34.56 3.36 F
1979 1994 0.844661 AACCCAGGTGCTATGGTGGA 60.845 55.000 0.00 0.00 35.96 4.02 F
2017 2032 1.704641 ACTAGATCATACCCTGCGCA 58.295 50.000 10.98 10.98 0.00 6.09 F
2259 2283 1.981256 TGTTGAGACTGGGCCTTTTC 58.019 50.000 4.53 0.00 0.00 2.29 F
2601 2691 2.289002 GTGGTTTTGTGCTGACTGAGAG 59.711 50.000 0.00 0.00 0.00 3.20 F
3160 3261 3.498774 AAGTGATCCACATATCTGCCC 57.501 47.619 0.00 0.00 36.74 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 1567 0.687757 AACAGCGGAGAGGCCTATGA 60.688 55.000 3.53 0.00 0.00 2.15 R
1836 1851 0.732571 AACAGACACAGCCAACAACG 59.267 50.000 0.00 0.00 0.00 4.10 R
2005 2020 1.357690 CAGCAATGCGCAGGGTATG 59.642 57.895 18.32 10.66 46.13 2.39 R
3169 3270 0.317020 GTGGTTTTGCGCAGACTGAC 60.317 55.000 20.64 15.12 0.00 3.51 R
3924 4028 4.833390 ACTCATTTAGTTGGCTAGTGGAC 58.167 43.478 0.00 0.00 33.35 4.02 R
4224 4343 2.494059 ACACCAACTTCGGATTCACAG 58.506 47.619 0.00 0.00 0.00 3.66 R
4286 4406 5.472820 GCTGGCTTTTGAGAGAGCATATAAT 59.527 40.000 0.00 0.00 40.63 1.28 R
4804 4936 2.071778 AAGACACACAAACCAGGCAT 57.928 45.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.197107 GAGTTCAGTTCAGTTCGGTTTG 57.803 45.455 0.00 0.00 0.00 2.93
22 23 3.869065 AGTTCAGTTCAGTTCGGTTTGA 58.131 40.909 0.00 0.00 0.00 2.69
23 24 4.258543 AGTTCAGTTCAGTTCGGTTTGAA 58.741 39.130 0.00 0.00 0.00 2.69
24 25 4.881850 AGTTCAGTTCAGTTCGGTTTGAAT 59.118 37.500 1.00 0.00 39.21 2.57
25 26 6.053005 AGTTCAGTTCAGTTCGGTTTGAATA 58.947 36.000 1.00 0.00 39.21 1.75
26 27 5.917541 TCAGTTCAGTTCGGTTTGAATAC 57.082 39.130 1.00 0.00 39.21 1.89
27 28 5.607477 TCAGTTCAGTTCGGTTTGAATACT 58.393 37.500 1.00 0.00 39.21 2.12
28 29 5.465390 TCAGTTCAGTTCGGTTTGAATACTG 59.535 40.000 0.00 0.00 39.21 2.74
29 30 5.236478 CAGTTCAGTTCGGTTTGAATACTGT 59.764 40.000 0.00 0.00 39.21 3.55
30 31 5.465724 AGTTCAGTTCGGTTTGAATACTGTC 59.534 40.000 0.00 0.00 39.21 3.51
31 32 4.312443 TCAGTTCGGTTTGAATACTGTCC 58.688 43.478 0.00 0.00 39.21 4.02
32 33 4.039973 TCAGTTCGGTTTGAATACTGTCCT 59.960 41.667 0.00 0.00 39.21 3.85
33 34 4.389077 CAGTTCGGTTTGAATACTGTCCTC 59.611 45.833 0.00 0.00 39.21 3.71
34 35 3.226346 TCGGTTTGAATACTGTCCTCG 57.774 47.619 0.00 0.00 0.00 4.63
35 36 2.821378 TCGGTTTGAATACTGTCCTCGA 59.179 45.455 0.00 0.00 0.00 4.04
36 37 3.119602 TCGGTTTGAATACTGTCCTCGAG 60.120 47.826 5.13 5.13 0.00 4.04
37 38 3.119602 CGGTTTGAATACTGTCCTCGAGA 60.120 47.826 15.71 0.00 0.00 4.04
38 39 4.617530 CGGTTTGAATACTGTCCTCGAGAA 60.618 45.833 15.71 0.00 0.00 2.87
39 40 4.865365 GGTTTGAATACTGTCCTCGAGAAG 59.135 45.833 15.71 10.89 0.00 2.85
40 41 3.784701 TGAATACTGTCCTCGAGAAGC 57.215 47.619 15.71 3.92 0.00 3.86
41 42 3.089284 TGAATACTGTCCTCGAGAAGCA 58.911 45.455 15.71 8.58 0.00 3.91
42 43 3.509967 TGAATACTGTCCTCGAGAAGCAA 59.490 43.478 15.71 1.38 0.00 3.91
43 44 4.021456 TGAATACTGTCCTCGAGAAGCAAA 60.021 41.667 15.71 1.64 0.00 3.68
44 45 4.744795 ATACTGTCCTCGAGAAGCAAAT 57.255 40.909 15.71 3.79 0.00 2.32
45 46 2.693069 ACTGTCCTCGAGAAGCAAATG 58.307 47.619 15.71 0.00 0.00 2.32
46 47 2.005451 CTGTCCTCGAGAAGCAAATGG 58.995 52.381 15.71 0.00 0.00 3.16
47 48 1.347707 TGTCCTCGAGAAGCAAATGGT 59.652 47.619 15.71 0.00 0.00 3.55
48 49 1.734465 GTCCTCGAGAAGCAAATGGTG 59.266 52.381 15.71 0.00 0.00 4.17
49 50 1.347707 TCCTCGAGAAGCAAATGGTGT 59.652 47.619 15.71 0.00 0.00 4.16
50 51 2.154462 CCTCGAGAAGCAAATGGTGTT 58.846 47.619 15.71 0.00 0.00 3.32
51 52 2.095567 CCTCGAGAAGCAAATGGTGTTG 60.096 50.000 15.71 0.00 0.00 3.33
52 53 2.549754 CTCGAGAAGCAAATGGTGTTGT 59.450 45.455 6.58 0.00 0.00 3.32
53 54 3.734463 TCGAGAAGCAAATGGTGTTGTA 58.266 40.909 0.00 0.00 0.00 2.41
54 55 3.496884 TCGAGAAGCAAATGGTGTTGTAC 59.503 43.478 0.00 0.00 0.00 2.90
55 56 3.249799 CGAGAAGCAAATGGTGTTGTACA 59.750 43.478 0.00 0.00 0.00 2.90
56 57 4.083324 CGAGAAGCAAATGGTGTTGTACAT 60.083 41.667 0.00 0.00 0.00 2.29
57 58 5.125100 AGAAGCAAATGGTGTTGTACATG 57.875 39.130 0.00 0.00 0.00 3.21
58 59 4.826733 AGAAGCAAATGGTGTTGTACATGA 59.173 37.500 0.00 0.00 0.00 3.07
59 60 5.301551 AGAAGCAAATGGTGTTGTACATGAA 59.698 36.000 0.00 0.00 0.00 2.57
60 61 5.726980 AGCAAATGGTGTTGTACATGAAT 57.273 34.783 0.00 0.00 0.00 2.57
61 62 6.100404 AGCAAATGGTGTTGTACATGAATT 57.900 33.333 0.00 0.00 0.00 2.17
62 63 7.225784 AGCAAATGGTGTTGTACATGAATTA 57.774 32.000 0.00 0.00 0.00 1.40
63 64 7.665690 AGCAAATGGTGTTGTACATGAATTAA 58.334 30.769 0.00 0.00 0.00 1.40
64 65 7.598493 AGCAAATGGTGTTGTACATGAATTAAC 59.402 33.333 0.00 0.00 0.00 2.01
65 66 7.598493 GCAAATGGTGTTGTACATGAATTAACT 59.402 33.333 0.00 0.00 0.00 2.24
66 67 9.474920 CAAATGGTGTTGTACATGAATTAACTT 57.525 29.630 0.00 0.00 0.00 2.66
70 71 8.952278 TGGTGTTGTACATGAATTAACTTATCC 58.048 33.333 0.00 3.06 0.00 2.59
71 72 9.174166 GGTGTTGTACATGAATTAACTTATCCT 57.826 33.333 0.00 0.00 0.00 3.24
72 73 9.988350 GTGTTGTACATGAATTAACTTATCCTG 57.012 33.333 0.00 0.00 0.00 3.86
73 74 8.673711 TGTTGTACATGAATTAACTTATCCTGC 58.326 33.333 0.00 0.00 0.00 4.85
74 75 8.893727 GTTGTACATGAATTAACTTATCCTGCT 58.106 33.333 0.00 0.00 0.00 4.24
76 77 9.764363 TGTACATGAATTAACTTATCCTGCTAG 57.236 33.333 0.00 0.00 0.00 3.42
77 78 9.982651 GTACATGAATTAACTTATCCTGCTAGA 57.017 33.333 0.00 0.00 0.00 2.43
98 99 8.190888 CTAGATTTAGCTTTTGTAGTGAGTGG 57.809 38.462 0.00 0.00 0.00 4.00
99 100 6.769512 AGATTTAGCTTTTGTAGTGAGTGGA 58.230 36.000 0.00 0.00 0.00 4.02
100 101 7.398024 AGATTTAGCTTTTGTAGTGAGTGGAT 58.602 34.615 0.00 0.00 0.00 3.41
101 102 7.885399 AGATTTAGCTTTTGTAGTGAGTGGATT 59.115 33.333 0.00 0.00 0.00 3.01
102 103 6.801539 TTAGCTTTTGTAGTGAGTGGATTG 57.198 37.500 0.00 0.00 0.00 2.67
103 104 4.973168 AGCTTTTGTAGTGAGTGGATTGA 58.027 39.130 0.00 0.00 0.00 2.57
104 105 5.564550 AGCTTTTGTAGTGAGTGGATTGAT 58.435 37.500 0.00 0.00 0.00 2.57
105 106 5.413833 AGCTTTTGTAGTGAGTGGATTGATG 59.586 40.000 0.00 0.00 0.00 3.07
106 107 5.412594 GCTTTTGTAGTGAGTGGATTGATGA 59.587 40.000 0.00 0.00 0.00 2.92
107 108 6.094603 GCTTTTGTAGTGAGTGGATTGATGAT 59.905 38.462 0.00 0.00 0.00 2.45
108 109 7.615582 TTTTGTAGTGAGTGGATTGATGATC 57.384 36.000 0.00 0.00 0.00 2.92
121 122 6.382869 GATTGATGATCCTCCGAATGTTTT 57.617 37.500 0.00 0.00 0.00 2.43
122 123 7.496529 GATTGATGATCCTCCGAATGTTTTA 57.503 36.000 0.00 0.00 0.00 1.52
123 124 6.677781 TTGATGATCCTCCGAATGTTTTAC 57.322 37.500 0.00 0.00 0.00 2.01
124 125 5.989477 TGATGATCCTCCGAATGTTTTACT 58.011 37.500 0.00 0.00 0.00 2.24
125 126 6.414732 TGATGATCCTCCGAATGTTTTACTT 58.585 36.000 0.00 0.00 0.00 2.24
126 127 6.884295 TGATGATCCTCCGAATGTTTTACTTT 59.116 34.615 0.00 0.00 0.00 2.66
127 128 6.737254 TGATCCTCCGAATGTTTTACTTTC 57.263 37.500 0.00 0.00 0.00 2.62
128 129 6.472887 TGATCCTCCGAATGTTTTACTTTCT 58.527 36.000 0.00 0.00 32.14 2.52
129 130 6.940298 TGATCCTCCGAATGTTTTACTTTCTT 59.060 34.615 0.00 0.00 32.14 2.52
130 131 7.447238 TGATCCTCCGAATGTTTTACTTTCTTT 59.553 33.333 0.00 0.00 32.14 2.52
131 132 6.966021 TCCTCCGAATGTTTTACTTTCTTTG 58.034 36.000 0.00 0.00 32.14 2.77
132 133 5.629435 CCTCCGAATGTTTTACTTTCTTTGC 59.371 40.000 0.00 0.00 32.14 3.68
133 134 6.385649 TCCGAATGTTTTACTTTCTTTGCT 57.614 33.333 0.00 0.00 32.14 3.91
134 135 6.205784 TCCGAATGTTTTACTTTCTTTGCTG 58.794 36.000 0.00 0.00 32.14 4.41
135 136 5.402270 CCGAATGTTTTACTTTCTTTGCTGG 59.598 40.000 0.00 0.00 32.14 4.85
136 137 6.205784 CGAATGTTTTACTTTCTTTGCTGGA 58.794 36.000 0.00 0.00 32.14 3.86
137 138 6.863126 CGAATGTTTTACTTTCTTTGCTGGAT 59.137 34.615 0.00 0.00 32.14 3.41
138 139 7.148918 CGAATGTTTTACTTTCTTTGCTGGATG 60.149 37.037 0.00 0.00 32.14 3.51
139 140 6.463995 TGTTTTACTTTCTTTGCTGGATGT 57.536 33.333 0.00 0.00 0.00 3.06
140 141 7.575414 TGTTTTACTTTCTTTGCTGGATGTA 57.425 32.000 0.00 0.00 0.00 2.29
141 142 7.648142 TGTTTTACTTTCTTTGCTGGATGTAG 58.352 34.615 0.00 0.00 0.00 2.74
142 143 7.284489 TGTTTTACTTTCTTTGCTGGATGTAGT 59.716 33.333 0.00 0.00 0.00 2.73
143 144 7.817418 TTTACTTTCTTTGCTGGATGTAGTT 57.183 32.000 0.00 0.00 0.00 2.24
144 145 8.911918 TTTACTTTCTTTGCTGGATGTAGTTA 57.088 30.769 0.00 0.00 0.00 2.24
145 146 8.547967 TTACTTTCTTTGCTGGATGTAGTTAG 57.452 34.615 0.00 0.00 0.00 2.34
146 147 5.412904 ACTTTCTTTGCTGGATGTAGTTAGC 59.587 40.000 0.00 0.00 36.72 3.09
147 148 3.521560 TCTTTGCTGGATGTAGTTAGCG 58.478 45.455 0.00 0.00 38.96 4.26
148 149 3.056107 TCTTTGCTGGATGTAGTTAGCGT 60.056 43.478 0.00 0.00 38.96 5.07
149 150 3.328382 TTGCTGGATGTAGTTAGCGTT 57.672 42.857 0.00 0.00 38.96 4.84
150 151 4.459390 TTGCTGGATGTAGTTAGCGTTA 57.541 40.909 0.00 0.00 38.96 3.18
151 152 4.665833 TGCTGGATGTAGTTAGCGTTAT 57.334 40.909 0.00 0.00 38.96 1.89
152 153 4.617959 TGCTGGATGTAGTTAGCGTTATC 58.382 43.478 0.00 0.00 38.96 1.75
153 154 4.098807 TGCTGGATGTAGTTAGCGTTATCA 59.901 41.667 0.00 0.00 38.96 2.15
154 155 4.444720 GCTGGATGTAGTTAGCGTTATCAC 59.555 45.833 0.00 0.00 0.00 3.06
155 156 5.585820 TGGATGTAGTTAGCGTTATCACA 57.414 39.130 0.00 0.00 0.00 3.58
156 157 6.156748 TGGATGTAGTTAGCGTTATCACAT 57.843 37.500 2.14 2.14 0.00 3.21
157 158 5.983118 TGGATGTAGTTAGCGTTATCACATG 59.017 40.000 5.91 0.00 0.00 3.21
158 159 5.107453 GGATGTAGTTAGCGTTATCACATGC 60.107 44.000 0.00 5.42 0.00 4.06
159 160 4.749976 TGTAGTTAGCGTTATCACATGCA 58.250 39.130 0.00 0.00 0.00 3.96
160 161 5.172205 TGTAGTTAGCGTTATCACATGCAA 58.828 37.500 0.00 0.00 0.00 4.08
161 162 5.639931 TGTAGTTAGCGTTATCACATGCAAA 59.360 36.000 0.00 0.00 0.00 3.68
162 163 4.969816 AGTTAGCGTTATCACATGCAAAC 58.030 39.130 0.00 0.00 0.00 2.93
163 164 4.454161 AGTTAGCGTTATCACATGCAAACA 59.546 37.500 0.00 0.00 0.00 2.83
164 165 3.476295 AGCGTTATCACATGCAAACAG 57.524 42.857 0.00 0.00 0.00 3.16
165 166 1.913403 GCGTTATCACATGCAAACAGC 59.087 47.619 0.00 0.00 45.96 4.40
182 183 5.869649 AACAGCAAGTTTTAGGACCAATT 57.130 34.783 0.00 0.00 37.03 2.32
183 184 6.969993 AACAGCAAGTTTTAGGACCAATTA 57.030 33.333 0.00 0.00 37.03 1.40
184 185 7.539034 AACAGCAAGTTTTAGGACCAATTAT 57.461 32.000 0.00 0.00 37.03 1.28
185 186 7.539034 ACAGCAAGTTTTAGGACCAATTATT 57.461 32.000 0.00 0.00 0.00 1.40
186 187 7.962441 ACAGCAAGTTTTAGGACCAATTATTT 58.038 30.769 0.00 0.00 0.00 1.40
187 188 8.428852 ACAGCAAGTTTTAGGACCAATTATTTT 58.571 29.630 0.00 0.00 0.00 1.82
188 189 8.711457 CAGCAAGTTTTAGGACCAATTATTTTG 58.289 33.333 0.00 0.00 0.00 2.44
189 190 7.877612 AGCAAGTTTTAGGACCAATTATTTTGG 59.122 33.333 2.87 2.87 44.91 3.28
190 191 7.360861 GCAAGTTTTAGGACCAATTATTTTGGC 60.361 37.037 4.31 0.00 43.23 4.52
191 192 7.309770 AGTTTTAGGACCAATTATTTTGGCA 57.690 32.000 4.31 0.00 43.23 4.92
192 193 7.386059 AGTTTTAGGACCAATTATTTTGGCAG 58.614 34.615 4.31 0.00 43.23 4.85
193 194 6.926630 TTTAGGACCAATTATTTTGGCAGT 57.073 33.333 4.31 0.00 43.23 4.40
194 195 6.926630 TTAGGACCAATTATTTTGGCAGTT 57.073 33.333 4.31 0.00 43.23 3.16
195 196 5.823861 AGGACCAATTATTTTGGCAGTTT 57.176 34.783 4.31 0.00 43.23 2.66
196 197 6.926630 AGGACCAATTATTTTGGCAGTTTA 57.073 33.333 4.31 0.00 43.23 2.01
197 198 7.309770 AGGACCAATTATTTTGGCAGTTTAA 57.690 32.000 4.31 0.00 43.23 1.52
198 199 7.740805 AGGACCAATTATTTTGGCAGTTTAAA 58.259 30.769 4.31 0.00 43.23 1.52
199 200 8.214364 AGGACCAATTATTTTGGCAGTTTAAAA 58.786 29.630 4.31 0.00 43.23 1.52
200 201 8.841300 GGACCAATTATTTTGGCAGTTTAAAAA 58.159 29.630 4.31 0.00 43.23 1.94
217 218 2.828661 AAAATAAGCCACCTCCTCCC 57.171 50.000 0.00 0.00 0.00 4.30
218 219 0.927029 AAATAAGCCACCTCCTCCCC 59.073 55.000 0.00 0.00 0.00 4.81
219 220 0.253630 AATAAGCCACCTCCTCCCCA 60.254 55.000 0.00 0.00 0.00 4.96
220 221 0.695803 ATAAGCCACCTCCTCCCCAG 60.696 60.000 0.00 0.00 0.00 4.45
223 224 2.612115 CCACCTCCTCCCCAGCTT 60.612 66.667 0.00 0.00 0.00 3.74
224 225 2.234296 CCACCTCCTCCCCAGCTTT 61.234 63.158 0.00 0.00 0.00 3.51
225 226 1.770324 CACCTCCTCCCCAGCTTTT 59.230 57.895 0.00 0.00 0.00 2.27
226 227 0.322906 CACCTCCTCCCCAGCTTTTC 60.323 60.000 0.00 0.00 0.00 2.29
227 228 1.304617 CCTCCTCCCCAGCTTTTCC 59.695 63.158 0.00 0.00 0.00 3.13
228 229 1.210885 CCTCCTCCCCAGCTTTTCCT 61.211 60.000 0.00 0.00 0.00 3.36
229 230 1.584724 CTCCTCCCCAGCTTTTCCTA 58.415 55.000 0.00 0.00 0.00 2.94
230 231 2.131023 CTCCTCCCCAGCTTTTCCTAT 58.869 52.381 0.00 0.00 0.00 2.57
231 232 3.318313 CTCCTCCCCAGCTTTTCCTATA 58.682 50.000 0.00 0.00 0.00 1.31
232 233 3.716872 CTCCTCCCCAGCTTTTCCTATAA 59.283 47.826 0.00 0.00 0.00 0.98
233 234 3.716872 TCCTCCCCAGCTTTTCCTATAAG 59.283 47.826 0.00 0.00 0.00 1.73
234 235 3.481453 CTCCCCAGCTTTTCCTATAAGC 58.519 50.000 0.00 0.00 46.47 3.09
243 244 5.863965 GCTTTTCCTATAAGCCATCTCTCT 58.136 41.667 0.00 0.00 41.62 3.10
244 245 6.295249 GCTTTTCCTATAAGCCATCTCTCTT 58.705 40.000 0.00 0.00 41.62 2.85
245 246 7.445945 GCTTTTCCTATAAGCCATCTCTCTTA 58.554 38.462 0.00 0.00 41.62 2.10
246 247 8.100164 GCTTTTCCTATAAGCCATCTCTCTTAT 58.900 37.037 0.00 0.00 41.62 1.73
249 250 8.727100 TTCCTATAAGCCATCTCTCTTATTCA 57.273 34.615 0.00 0.00 36.95 2.57
250 251 8.907829 TCCTATAAGCCATCTCTCTTATTCAT 57.092 34.615 0.00 0.00 36.95 2.57
251 252 9.331466 TCCTATAAGCCATCTCTCTTATTCATT 57.669 33.333 0.00 0.00 36.95 2.57
252 253 9.381033 CCTATAAGCCATCTCTCTTATTCATTG 57.619 37.037 0.00 0.00 36.95 2.82
253 254 9.381033 CTATAAGCCATCTCTCTTATTCATTGG 57.619 37.037 0.00 0.00 36.95 3.16
254 255 4.983053 AGCCATCTCTCTTATTCATTGGG 58.017 43.478 0.00 0.00 0.00 4.12
255 256 4.662179 AGCCATCTCTCTTATTCATTGGGA 59.338 41.667 0.00 0.00 0.00 4.37
256 257 4.759183 GCCATCTCTCTTATTCATTGGGAC 59.241 45.833 0.00 0.00 0.00 4.46
257 258 5.455899 GCCATCTCTCTTATTCATTGGGACT 60.456 44.000 0.00 0.00 0.00 3.85
258 259 6.599445 CCATCTCTCTTATTCATTGGGACTT 58.401 40.000 0.00 0.00 0.00 3.01
259 260 6.709846 CCATCTCTCTTATTCATTGGGACTTC 59.290 42.308 0.00 0.00 0.00 3.01
260 261 7.419981 CCATCTCTCTTATTCATTGGGACTTCT 60.420 40.741 0.00 0.00 0.00 2.85
261 262 8.646004 CATCTCTCTTATTCATTGGGACTTCTA 58.354 37.037 0.00 0.00 0.00 2.10
262 263 8.609617 TCTCTCTTATTCATTGGGACTTCTAA 57.390 34.615 0.00 0.00 0.00 2.10
263 264 9.046846 TCTCTCTTATTCATTGGGACTTCTAAA 57.953 33.333 0.00 0.00 0.00 1.85
264 265 9.103861 CTCTCTTATTCATTGGGACTTCTAAAC 57.896 37.037 0.00 0.00 0.00 2.01
265 266 8.826765 TCTCTTATTCATTGGGACTTCTAAACT 58.173 33.333 0.00 0.00 0.00 2.66
268 269 9.892130 CTTATTCATTGGGACTTCTAAACTAGT 57.108 33.333 0.00 0.00 0.00 2.57
272 273 9.667107 TTCATTGGGACTTCTAAACTAGTTATG 57.333 33.333 8.92 5.05 0.00 1.90
273 274 8.265055 TCATTGGGACTTCTAAACTAGTTATGG 58.735 37.037 8.92 2.52 0.00 2.74
274 275 7.801893 TTGGGACTTCTAAACTAGTTATGGA 57.198 36.000 8.92 4.90 0.00 3.41
275 276 7.801893 TGGGACTTCTAAACTAGTTATGGAA 57.198 36.000 8.92 11.90 0.00 3.53
276 277 8.388656 TGGGACTTCTAAACTAGTTATGGAAT 57.611 34.615 8.92 0.00 0.00 3.01
277 278 9.496710 TGGGACTTCTAAACTAGTTATGGAATA 57.503 33.333 8.92 0.00 0.00 1.75
307 308 9.546428 AATTTAGAAGTCTCAACAAATTTTGGG 57.454 29.630 13.42 5.57 34.12 4.12
308 309 7.889873 TTAGAAGTCTCAACAAATTTTGGGA 57.110 32.000 13.42 9.21 33.36 4.37
309 310 6.983906 AGAAGTCTCAACAAATTTTGGGAT 57.016 33.333 13.42 0.00 38.27 3.85
310 311 6.752168 AGAAGTCTCAACAAATTTTGGGATG 58.248 36.000 13.42 9.13 38.27 3.51
311 312 5.473066 AGTCTCAACAAATTTTGGGATGG 57.527 39.130 13.42 1.44 38.27 3.51
312 313 3.996363 GTCTCAACAAATTTTGGGATGGC 59.004 43.478 13.42 0.00 38.27 4.40
313 314 3.903090 TCTCAACAAATTTTGGGATGGCT 59.097 39.130 13.42 0.00 30.64 4.75
314 315 4.347583 TCTCAACAAATTTTGGGATGGCTT 59.652 37.500 13.42 0.00 30.64 4.35
315 316 5.541868 TCTCAACAAATTTTGGGATGGCTTA 59.458 36.000 13.42 0.00 30.64 3.09
316 317 6.213195 TCTCAACAAATTTTGGGATGGCTTAT 59.787 34.615 13.42 0.00 30.64 1.73
317 318 6.777782 TCAACAAATTTTGGGATGGCTTATT 58.222 32.000 13.42 0.00 34.12 1.40
318 319 7.230027 TCAACAAATTTTGGGATGGCTTATTT 58.770 30.769 13.42 0.00 34.12 1.40
319 320 7.723172 TCAACAAATTTTGGGATGGCTTATTTT 59.277 29.630 13.42 0.00 34.12 1.82
320 321 8.358895 CAACAAATTTTGGGATGGCTTATTTTT 58.641 29.630 13.42 0.00 34.12 1.94
338 339 3.923017 TTTTAAGCTGGAAGAAGCAGC 57.077 42.857 0.00 0.00 46.08 5.25
345 346 4.446994 GCTGGAAGAAGCAGCTTATTTT 57.553 40.909 16.06 7.50 43.01 1.82
346 347 4.814147 GCTGGAAGAAGCAGCTTATTTTT 58.186 39.130 16.06 5.11 43.01 1.94
366 367 4.996062 TTTAAGCCGTCTAAAAGAACCG 57.004 40.909 0.00 0.00 0.00 4.44
367 368 1.804601 AAGCCGTCTAAAAGAACCGG 58.195 50.000 0.00 0.00 37.06 5.28
369 370 2.463592 CCGTCTAAAAGAACCGGCC 58.536 57.895 0.00 0.00 29.16 6.13
370 371 1.022982 CCGTCTAAAAGAACCGGCCC 61.023 60.000 0.00 0.00 29.16 5.80
371 372 0.036671 CGTCTAAAAGAACCGGCCCT 60.037 55.000 0.00 0.00 0.00 5.19
372 373 1.609841 CGTCTAAAAGAACCGGCCCTT 60.610 52.381 0.00 1.42 0.00 3.95
373 374 2.354003 CGTCTAAAAGAACCGGCCCTTA 60.354 50.000 0.00 0.00 0.00 2.69
374 375 3.268330 GTCTAAAAGAACCGGCCCTTAG 58.732 50.000 0.00 2.18 0.00 2.18
375 376 2.908351 TCTAAAAGAACCGGCCCTTAGT 59.092 45.455 0.00 0.00 0.00 2.24
376 377 2.670019 AAAAGAACCGGCCCTTAGTT 57.330 45.000 0.00 0.00 0.00 2.24
377 378 1.905637 AAAGAACCGGCCCTTAGTTG 58.094 50.000 0.00 0.00 0.00 3.16
378 379 0.769247 AAGAACCGGCCCTTAGTTGT 59.231 50.000 0.00 0.00 0.00 3.32
379 380 1.648116 AGAACCGGCCCTTAGTTGTA 58.352 50.000 0.00 0.00 0.00 2.41
380 381 1.553704 AGAACCGGCCCTTAGTTGTAG 59.446 52.381 0.00 0.00 0.00 2.74
381 382 0.616891 AACCGGCCCTTAGTTGTAGG 59.383 55.000 0.00 0.00 0.00 3.18
382 383 0.252375 ACCGGCCCTTAGTTGTAGGA 60.252 55.000 0.00 0.00 34.56 2.94
383 384 0.906775 CCGGCCCTTAGTTGTAGGAA 59.093 55.000 0.00 0.00 34.56 3.36
384 385 1.279846 CCGGCCCTTAGTTGTAGGAAA 59.720 52.381 0.00 0.00 34.56 3.13
385 386 2.290450 CCGGCCCTTAGTTGTAGGAAAA 60.290 50.000 0.00 0.00 34.56 2.29
386 387 3.414269 CGGCCCTTAGTTGTAGGAAAAA 58.586 45.455 0.00 0.00 34.56 1.94
489 491 4.309254 GATCACGTCGACCTTTTTCTTC 57.691 45.455 10.58 0.00 0.00 2.87
646 656 1.664321 GCCTTCGCGTCCTTCTCCTA 61.664 60.000 5.77 0.00 0.00 2.94
927 937 1.899814 CTCAAGGTAGTGCAGTACCCA 59.100 52.381 36.58 23.95 43.29 4.51
1036 1047 4.818005 TGTACAAGTGAGTCTGACGTAGAA 59.182 41.667 1.52 0.00 37.12 2.10
1039 1050 3.143211 AGTGAGTCTGACGTAGAACCT 57.857 47.619 1.52 0.00 37.12 3.50
1043 1054 3.252701 TGAGTCTGACGTAGAACCTTGTC 59.747 47.826 1.52 0.00 37.12 3.18
1090 1102 3.057315 CACCGGAGCTGTTTGATGAAATT 60.057 43.478 9.46 0.00 0.00 1.82
1264 1278 5.104485 GGTTAGGGACCTTGACACTATCAAT 60.104 44.000 0.00 0.00 46.37 2.57
1353 1367 6.158598 TCTTGTCAAATTAGCAAATTGAGGC 58.841 36.000 0.00 0.00 35.46 4.70
1517 1532 3.879892 GGACCTGAAATGCCTTAGTCATC 59.120 47.826 0.00 0.00 0.00 2.92
1538 1553 2.093306 TCTAGTGGGTGCAAACATCG 57.907 50.000 0.00 0.00 0.00 3.84
1550 1565 5.030295 GTGCAAACATCGAATCATAACCTG 58.970 41.667 0.00 0.00 0.00 4.00
1551 1566 4.037690 GCAAACATCGAATCATAACCTGC 58.962 43.478 0.00 0.00 0.00 4.85
1552 1567 4.201950 GCAAACATCGAATCATAACCTGCT 60.202 41.667 0.00 0.00 0.00 4.24
1740 1755 2.475487 AGTTTACAAGTTCTCGAAGCGC 59.525 45.455 0.00 0.00 0.00 5.92
1924 1939 4.906618 AGGACATACGGTTGAGTCAATTT 58.093 39.130 9.18 0.00 32.79 1.82
1952 1967 7.684062 ATTTTCGAGACAACTTTTCAACATG 57.316 32.000 0.00 0.00 0.00 3.21
1979 1994 0.844661 AACCCAGGTGCTATGGTGGA 60.845 55.000 0.00 0.00 35.96 4.02
2017 2032 1.704641 ACTAGATCATACCCTGCGCA 58.295 50.000 10.98 10.98 0.00 6.09
2253 2270 5.506317 GCATATTTGTATGTTGAGACTGGGC 60.506 44.000 0.00 0.00 0.00 5.36
2259 2283 1.981256 TGTTGAGACTGGGCCTTTTC 58.019 50.000 4.53 0.00 0.00 2.29
2581 2671 2.856760 TATCCCTGGCTCTCTCAAGT 57.143 50.000 0.00 0.00 0.00 3.16
2601 2691 2.289002 GTGGTTTTGTGCTGACTGAGAG 59.711 50.000 0.00 0.00 0.00 3.20
2605 2695 3.827008 TTTGTGCTGACTGAGAGAACT 57.173 42.857 0.00 0.00 0.00 3.01
2780 2877 9.003658 GTCAATCAGAAAAACCAGATTCTCTTA 57.996 33.333 0.00 0.00 33.73 2.10
3006 3107 4.632153 ACCTCCGATCCGAATTAATTGAG 58.368 43.478 5.17 4.18 0.00 3.02
3018 3119 6.146837 CCGAATTAATTGAGACAGCCTCTATG 59.853 42.308 5.17 0.00 42.44 2.23
3050 3151 6.488006 CCATTTTACATTGTATAGAGGCTGCT 59.512 38.462 0.00 0.00 0.00 4.24
3160 3261 3.498774 AAGTGATCCACATATCTGCCC 57.501 47.619 0.00 0.00 36.74 5.36
3167 3268 3.586429 TCCACATATCTGCCCTATGTCA 58.414 45.455 1.23 0.00 37.64 3.58
3169 3270 4.019950 TCCACATATCTGCCCTATGTCATG 60.020 45.833 0.00 0.00 37.64 3.07
3262 3363 5.712152 AACTTCTGCAATTTCAGGGTTAG 57.288 39.130 5.23 1.70 34.91 2.34
3270 3371 4.280929 GCAATTTCAGGGTTAGAAGGTTGT 59.719 41.667 0.00 0.00 31.14 3.32
3351 3452 5.404946 CATCTGAAATTAAACCTGCACCAG 58.595 41.667 0.00 0.00 0.00 4.00
3641 3742 9.442047 CTAATATCCACCTTTGTTGATCCTATC 57.558 37.037 0.00 0.00 30.19 2.08
3644 3745 6.823286 TCCACCTTTGTTGATCCTATCATA 57.177 37.500 0.00 0.00 39.39 2.15
3645 3746 6.830912 TCCACCTTTGTTGATCCTATCATAG 58.169 40.000 0.00 0.00 39.39 2.23
3646 3747 6.386927 TCCACCTTTGTTGATCCTATCATAGT 59.613 38.462 0.00 0.00 39.39 2.12
3647 3748 7.567250 TCCACCTTTGTTGATCCTATCATAGTA 59.433 37.037 0.00 0.00 39.39 1.82
3648 3749 7.657761 CCACCTTTGTTGATCCTATCATAGTAC 59.342 40.741 0.00 0.00 39.39 2.73
3649 3750 8.424918 CACCTTTGTTGATCCTATCATAGTACT 58.575 37.037 0.00 0.00 39.39 2.73
3863 3967 9.112725 CATGAGTTTGATCATTTACAGGTATGA 57.887 33.333 0.00 0.00 37.84 2.15
3933 4037 8.911247 ATTTTTGAATTAAATCGTCCACTAGC 57.089 30.769 0.00 0.00 0.00 3.42
3934 4038 6.431198 TTTGAATTAAATCGTCCACTAGCC 57.569 37.500 0.00 0.00 0.00 3.93
3935 4039 5.092554 TGAATTAAATCGTCCACTAGCCA 57.907 39.130 0.00 0.00 0.00 4.75
3936 4040 5.492895 TGAATTAAATCGTCCACTAGCCAA 58.507 37.500 0.00 0.00 0.00 4.52
3937 4041 5.353123 TGAATTAAATCGTCCACTAGCCAAC 59.647 40.000 0.00 0.00 0.00 3.77
3938 4042 4.546829 TTAAATCGTCCACTAGCCAACT 57.453 40.909 0.00 0.00 0.00 3.16
3939 4043 5.664294 TTAAATCGTCCACTAGCCAACTA 57.336 39.130 0.00 0.00 0.00 2.24
3940 4044 4.546829 AAATCGTCCACTAGCCAACTAA 57.453 40.909 0.00 0.00 0.00 2.24
3941 4045 4.546829 AATCGTCCACTAGCCAACTAAA 57.453 40.909 0.00 0.00 0.00 1.85
3942 4046 4.755266 ATCGTCCACTAGCCAACTAAAT 57.245 40.909 0.00 0.00 0.00 1.40
3943 4047 3.857052 TCGTCCACTAGCCAACTAAATG 58.143 45.455 0.00 0.00 0.00 2.32
3944 4048 3.512329 TCGTCCACTAGCCAACTAAATGA 59.488 43.478 0.00 0.00 0.00 2.57
3945 4049 3.865745 CGTCCACTAGCCAACTAAATGAG 59.134 47.826 0.00 0.00 0.00 2.90
3946 4050 4.620803 CGTCCACTAGCCAACTAAATGAGT 60.621 45.833 0.00 0.00 41.56 3.41
3948 4052 5.351740 GTCCACTAGCCAACTAAATGAGTTC 59.648 44.000 0.00 0.00 45.81 3.01
3949 4053 5.012664 TCCACTAGCCAACTAAATGAGTTCA 59.987 40.000 0.00 0.00 45.81 3.18
3950 4054 5.882557 CCACTAGCCAACTAAATGAGTTCAT 59.117 40.000 0.00 0.00 45.81 2.57
3951 4055 6.375455 CCACTAGCCAACTAAATGAGTTCATT 59.625 38.462 1.58 1.58 45.81 2.57
4068 4187 4.847512 TGGGTCTAAGGACACCTCAATTTA 59.152 41.667 0.00 0.00 44.74 1.40
4070 4189 5.280317 GGGTCTAAGGACACCTCAATTTACA 60.280 44.000 0.00 0.00 43.77 2.41
4119 4238 5.869344 TGAACACATTCAGCACTATAGTCAC 59.131 40.000 1.26 0.00 40.01 3.67
4120 4239 5.405935 ACACATTCAGCACTATAGTCACA 57.594 39.130 1.26 0.00 0.00 3.58
4224 4343 3.926616 TGAGCAGCTGAAGGTTAGTAAC 58.073 45.455 20.43 4.32 0.00 2.50
4239 4358 5.930569 GGTTAGTAACTGTGAATCCGAAGTT 59.069 40.000 12.65 0.00 36.80 2.66
4410 4530 5.277731 GGAGAGCATAGAAGCACTAATTTGC 60.278 44.000 0.00 0.00 43.34 3.68
4544 4667 4.974399 TGACTTTGGGTTTTTGGTTTGTT 58.026 34.783 0.00 0.00 0.00 2.83
4568 4691 9.301153 GTTAAGGTTTGGTATATTTGCTGAATG 57.699 33.333 0.00 0.00 0.00 2.67
4612 4736 1.136113 CATGTGCGCGTGTGTTTATGA 60.136 47.619 8.43 0.00 0.00 2.15
4651 4775 6.140110 TCTCATTTTGTAACTTTGCTTACGC 58.860 36.000 0.00 0.00 30.33 4.42
4684 4808 8.558973 AACTTTCTCATTTCCAATAGAGTCTG 57.441 34.615 1.86 0.00 0.00 3.51
4729 4853 0.315251 GACAAGCAAGCCCTGAAACC 59.685 55.000 0.00 0.00 0.00 3.27
4780 4912 8.955061 ATGTCGTTAGTTTTTCAAGATGATTG 57.045 30.769 0.00 0.00 0.00 2.67
4804 4936 5.405571 GCGTCAGTCTTCTTCATCTTAAACA 59.594 40.000 0.00 0.00 0.00 2.83
4807 4939 7.239972 GTCAGTCTTCTTCATCTTAAACATGC 58.760 38.462 0.00 0.00 0.00 4.06
4810 4942 6.373774 AGTCTTCTTCATCTTAAACATGCCTG 59.626 38.462 0.00 0.00 0.00 4.85
4814 4946 5.774690 TCTTCATCTTAAACATGCCTGGTTT 59.225 36.000 0.00 0.28 41.11 3.27
4830 4962 3.779759 TGGTTTGTGTGTCTTTTCATGC 58.220 40.909 0.00 0.00 0.00 4.06
5195 5332 1.334869 GCAAAGATTACATCCTGGCCG 59.665 52.381 0.00 0.00 0.00 6.13
5287 5424 3.802866 TGGATAATGCGCAGTGATGTTA 58.197 40.909 22.31 11.05 0.00 2.41
5384 5528 1.843421 GGCTGTATGGCCCCATGTA 59.157 57.895 10.02 0.00 45.92 2.29
5407 5552 8.986847 TGTATTTTGCCATTATGTTTGTTTCTG 58.013 29.630 0.00 0.00 0.00 3.02
5427 5572 9.098355 GTTTCTGGCATAGCGATATTTATATCA 57.902 33.333 9.68 0.00 39.23 2.15
5479 5624 0.609662 GGTGGCAAATCTGGTGCAAT 59.390 50.000 0.00 0.00 44.07 3.56
5533 5680 9.409312 CACAAGCTGTTTGATCAACATAAATAA 57.591 29.630 7.89 0.00 44.72 1.40
5605 5754 6.489603 TCAATAAGAATGGTGGTTGTGGTAT 58.510 36.000 0.00 0.00 0.00 2.73
5635 5784 8.506168 TCATGTTTATCAATTGACTTACTCCC 57.494 34.615 11.07 0.00 0.00 4.30
5636 5785 8.328758 TCATGTTTATCAATTGACTTACTCCCT 58.671 33.333 11.07 0.00 0.00 4.20
5637 5786 8.616076 CATGTTTATCAATTGACTTACTCCCTC 58.384 37.037 11.07 0.00 0.00 4.30
5638 5787 7.110155 TGTTTATCAATTGACTTACTCCCTCC 58.890 38.462 11.07 0.00 0.00 4.30
5639 5788 7.037586 TGTTTATCAATTGACTTACTCCCTCCT 60.038 37.037 11.07 0.00 0.00 3.69
5640 5789 7.510675 TTATCAATTGACTTACTCCCTCCTT 57.489 36.000 11.07 0.00 0.00 3.36
5641 5790 5.422214 TCAATTGACTTACTCCCTCCTTC 57.578 43.478 3.38 0.00 0.00 3.46
5642 5791 4.225267 TCAATTGACTTACTCCCTCCTTCC 59.775 45.833 3.38 0.00 0.00 3.46
5643 5792 3.269592 TTGACTTACTCCCTCCTTCCA 57.730 47.619 0.00 0.00 0.00 3.53
5644 5793 3.491766 TGACTTACTCCCTCCTTCCAT 57.508 47.619 0.00 0.00 0.00 3.41
5645 5794 3.375699 TGACTTACTCCCTCCTTCCATC 58.624 50.000 0.00 0.00 0.00 3.51
5646 5795 3.012959 TGACTTACTCCCTCCTTCCATCT 59.987 47.826 0.00 0.00 0.00 2.90
5647 5796 4.232122 TGACTTACTCCCTCCTTCCATCTA 59.768 45.833 0.00 0.00 0.00 1.98
5648 5797 5.103043 TGACTTACTCCCTCCTTCCATCTAT 60.103 44.000 0.00 0.00 0.00 1.98
5649 5798 6.104243 TGACTTACTCCCTCCTTCCATCTATA 59.896 42.308 0.00 0.00 0.00 1.31
5650 5799 7.122311 ACTTACTCCCTCCTTCCATCTATAT 57.878 40.000 0.00 0.00 0.00 0.86
5651 5800 8.245929 ACTTACTCCCTCCTTCCATCTATATA 57.754 38.462 0.00 0.00 0.00 0.86
5652 5801 8.340757 ACTTACTCCCTCCTTCCATCTATATAG 58.659 40.741 3.10 3.10 0.00 1.31
5653 5802 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
5654 5803 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
5655 5804 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
5656 5805 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
5657 5806 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
5658 5807 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
5659 5808 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
5660 5809 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
5661 5810 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
5662 5811 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
5663 5812 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
5664 5813 4.345257 CCATCTATATAGGGCCTAATGCGT 59.655 45.833 18.91 2.76 42.61 5.24
5665 5814 5.163301 CCATCTATATAGGGCCTAATGCGTT 60.163 44.000 18.91 1.94 42.61 4.84
5666 5815 6.349300 CATCTATATAGGGCCTAATGCGTTT 58.651 40.000 18.91 1.12 42.61 3.60
5667 5816 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
5668 5817 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
5669 5818 5.959618 ATATAGGGCCTAATGCGTTTTTC 57.040 39.130 18.91 0.00 42.61 2.29
5670 5819 0.808755 AGGGCCTAATGCGTTTTTCG 59.191 50.000 2.82 0.00 42.61 3.46
5671 5820 0.806241 GGGCCTAATGCGTTTTTCGA 59.194 50.000 0.84 0.00 42.61 3.71
5672 5821 1.202143 GGGCCTAATGCGTTTTTCGAG 60.202 52.381 0.84 0.00 42.61 4.04
5673 5822 1.202143 GGCCTAATGCGTTTTTCGAGG 60.202 52.381 0.00 0.00 42.61 4.63
5674 5823 1.794076 GCCTAATGCGTTTTTCGAGGC 60.794 52.381 12.47 12.47 44.30 4.70
5675 5824 1.737793 CCTAATGCGTTTTTCGAGGCT 59.262 47.619 0.00 0.00 42.86 4.58
5676 5825 2.933906 CCTAATGCGTTTTTCGAGGCTA 59.066 45.455 0.00 0.00 42.86 3.93
5677 5826 3.372822 CCTAATGCGTTTTTCGAGGCTAA 59.627 43.478 0.00 0.00 42.86 3.09
5678 5827 2.894307 ATGCGTTTTTCGAGGCTAAC 57.106 45.000 0.00 0.00 42.86 2.34
5679 5828 1.873698 TGCGTTTTTCGAGGCTAACT 58.126 45.000 0.00 0.00 42.86 2.24
5680 5829 2.215196 TGCGTTTTTCGAGGCTAACTT 58.785 42.857 0.00 0.00 42.86 2.66
5681 5830 2.614983 TGCGTTTTTCGAGGCTAACTTT 59.385 40.909 0.00 0.00 42.86 2.66
5682 5831 2.971261 GCGTTTTTCGAGGCTAACTTTG 59.029 45.455 0.00 0.00 42.86 2.77
5683 5832 3.303526 GCGTTTTTCGAGGCTAACTTTGA 60.304 43.478 0.00 0.00 42.86 2.69
5684 5833 4.209112 CGTTTTTCGAGGCTAACTTTGAC 58.791 43.478 0.00 0.00 42.86 3.18
5685 5834 4.534168 GTTTTTCGAGGCTAACTTTGACC 58.466 43.478 0.00 0.00 0.00 4.02
5686 5835 3.478857 TTTCGAGGCTAACTTTGACCA 57.521 42.857 0.00 0.00 0.00 4.02
5687 5836 3.478857 TTCGAGGCTAACTTTGACCAA 57.521 42.857 0.00 0.00 0.00 3.67
5688 5837 3.478857 TCGAGGCTAACTTTGACCAAA 57.521 42.857 0.00 0.00 0.00 3.28
5689 5838 4.015872 TCGAGGCTAACTTTGACCAAAT 57.984 40.909 0.00 0.00 0.00 2.32
5690 5839 5.155278 TCGAGGCTAACTTTGACCAAATA 57.845 39.130 0.00 0.00 0.00 1.40
5691 5840 5.741011 TCGAGGCTAACTTTGACCAAATAT 58.259 37.500 0.00 0.00 0.00 1.28
5692 5841 6.177610 TCGAGGCTAACTTTGACCAAATATT 58.822 36.000 0.00 0.00 0.00 1.28
5693 5842 7.332557 TCGAGGCTAACTTTGACCAAATATTA 58.667 34.615 0.00 0.00 0.00 0.98
5694 5843 7.494625 TCGAGGCTAACTTTGACCAAATATTAG 59.505 37.037 15.32 15.32 34.88 1.73
5695 5844 7.494625 CGAGGCTAACTTTGACCAAATATTAGA 59.505 37.037 19.82 0.15 34.31 2.10
5696 5845 8.738645 AGGCTAACTTTGACCAAATATTAGAG 57.261 34.615 19.82 7.39 34.31 2.43
5697 5846 7.283354 AGGCTAACTTTGACCAAATATTAGAGC 59.717 37.037 19.82 13.12 34.31 4.09
5698 5847 7.067008 GGCTAACTTTGACCAAATATTAGAGCA 59.933 37.037 19.82 0.00 34.31 4.26
5699 5848 8.458843 GCTAACTTTGACCAAATATTAGAGCAA 58.541 33.333 19.82 0.00 34.31 3.91
5718 5867 8.859236 AGAGCAATAATATATGACATGCAACT 57.141 30.769 10.78 7.52 34.89 3.16
5719 5868 9.293404 AGAGCAATAATATATGACATGCAACTT 57.707 29.630 10.78 0.00 34.89 2.66
5727 5876 9.955208 AATATATGACATGCAACTTACACAATG 57.045 29.630 0.00 0.00 0.00 2.82
5728 5877 3.899734 TGACATGCAACTTACACAATGC 58.100 40.909 0.00 0.00 39.22 3.56
5732 5881 3.077229 TGCAACTTACACAATGCACAC 57.923 42.857 0.00 0.00 43.32 3.82
5733 5882 2.223688 TGCAACTTACACAATGCACACC 60.224 45.455 0.00 0.00 43.32 4.16
5734 5883 2.649516 CAACTTACACAATGCACACCG 58.350 47.619 0.00 0.00 0.00 4.94
5735 5884 1.961793 ACTTACACAATGCACACCGT 58.038 45.000 0.00 0.00 0.00 4.83
5736 5885 2.294074 ACTTACACAATGCACACCGTT 58.706 42.857 0.00 0.00 0.00 4.44
5737 5886 3.468770 ACTTACACAATGCACACCGTTA 58.531 40.909 0.00 0.00 0.00 3.18
5738 5887 3.878103 ACTTACACAATGCACACCGTTAA 59.122 39.130 0.00 0.00 0.00 2.01
5739 5888 4.335874 ACTTACACAATGCACACCGTTAAA 59.664 37.500 0.00 0.00 0.00 1.52
5740 5889 5.009210 ACTTACACAATGCACACCGTTAAAT 59.991 36.000 0.00 0.00 0.00 1.40
5741 5890 4.314740 ACACAATGCACACCGTTAAATT 57.685 36.364 0.00 0.00 0.00 1.82
5742 5891 4.295051 ACACAATGCACACCGTTAAATTC 58.705 39.130 0.00 0.00 0.00 2.17
5743 5892 4.202060 ACACAATGCACACCGTTAAATTCA 60.202 37.500 0.00 0.00 0.00 2.57
5744 5893 4.922692 CACAATGCACACCGTTAAATTCAT 59.077 37.500 0.00 0.00 0.00 2.57
5745 5894 4.922692 ACAATGCACACCGTTAAATTCATG 59.077 37.500 0.00 0.00 0.00 3.07
5746 5895 4.782019 ATGCACACCGTTAAATTCATGT 57.218 36.364 0.00 0.00 0.00 3.21
5747 5896 3.894920 TGCACACCGTTAAATTCATGTG 58.105 40.909 0.00 0.00 40.29 3.21
5748 5897 3.316588 TGCACACCGTTAAATTCATGTGT 59.683 39.130 0.00 0.00 39.65 3.72
5752 5901 6.137794 ACACCGTTAAATTCATGTGTGAAA 57.862 33.333 0.00 0.00 46.67 2.69
5753 5902 6.205784 ACACCGTTAAATTCATGTGTGAAAG 58.794 36.000 0.00 0.00 46.67 2.62
5754 5903 5.629020 CACCGTTAAATTCATGTGTGAAAGG 59.371 40.000 0.00 0.00 46.67 3.11
5755 5904 5.533154 ACCGTTAAATTCATGTGTGAAAGGA 59.467 36.000 0.00 0.00 46.67 3.36
5756 5905 6.086222 CCGTTAAATTCATGTGTGAAAGGAG 58.914 40.000 0.00 0.00 46.67 3.69
5757 5906 6.293955 CCGTTAAATTCATGTGTGAAAGGAGT 60.294 38.462 0.00 0.00 46.67 3.85
5758 5907 7.138736 CGTTAAATTCATGTGTGAAAGGAGTT 58.861 34.615 0.00 0.00 46.67 3.01
5759 5908 7.647715 CGTTAAATTCATGTGTGAAAGGAGTTT 59.352 33.333 0.00 0.00 46.67 2.66
5760 5909 9.313118 GTTAAATTCATGTGTGAAAGGAGTTTT 57.687 29.630 0.00 0.00 46.67 2.43
5761 5910 9.528018 TTAAATTCATGTGTGAAAGGAGTTTTC 57.472 29.630 0.00 0.00 46.67 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.869065 TCAAACCGAACTGAACTGAACT 58.131 40.909 0.00 0.00 0.00 3.01
2 3 4.609691 TTCAAACCGAACTGAACTGAAC 57.390 40.909 0.00 0.00 0.00 3.18
3 4 6.018262 CAGTATTCAAACCGAACTGAACTGAA 60.018 38.462 0.00 0.00 36.50 3.02
4 5 5.465390 CAGTATTCAAACCGAACTGAACTGA 59.535 40.000 0.00 0.00 36.50 3.41
5 6 5.236478 ACAGTATTCAAACCGAACTGAACTG 59.764 40.000 7.70 0.00 38.34 3.16
7 8 5.333875 GGACAGTATTCAAACCGAACTGAAC 60.334 44.000 7.70 2.18 36.12 3.18
8 9 4.753107 GGACAGTATTCAAACCGAACTGAA 59.247 41.667 7.70 0.00 36.12 3.02
9 10 4.039973 AGGACAGTATTCAAACCGAACTGA 59.960 41.667 7.70 0.00 36.12 3.41
10 11 4.315803 AGGACAGTATTCAAACCGAACTG 58.684 43.478 0.00 0.00 36.12 3.16
11 12 4.566987 GAGGACAGTATTCAAACCGAACT 58.433 43.478 0.00 0.00 36.12 3.01
12 13 3.367025 CGAGGACAGTATTCAAACCGAAC 59.633 47.826 0.00 0.00 36.12 3.95
13 14 3.256383 TCGAGGACAGTATTCAAACCGAA 59.744 43.478 0.00 0.00 38.22 4.30
14 15 2.821378 TCGAGGACAGTATTCAAACCGA 59.179 45.455 0.00 0.00 0.00 4.69
15 16 3.119602 TCTCGAGGACAGTATTCAAACCG 60.120 47.826 13.56 0.00 0.00 4.44
16 17 4.451629 TCTCGAGGACAGTATTCAAACC 57.548 45.455 13.56 0.00 0.00 3.27
17 18 4.327627 GCTTCTCGAGGACAGTATTCAAAC 59.672 45.833 13.56 0.00 0.00 2.93
18 19 4.021456 TGCTTCTCGAGGACAGTATTCAAA 60.021 41.667 13.56 0.00 0.00 2.69
19 20 3.509967 TGCTTCTCGAGGACAGTATTCAA 59.490 43.478 13.56 0.00 0.00 2.69
20 21 3.089284 TGCTTCTCGAGGACAGTATTCA 58.911 45.455 13.56 0.00 0.00 2.57
21 22 3.784701 TGCTTCTCGAGGACAGTATTC 57.215 47.619 13.56 0.00 0.00 1.75
22 23 4.537135 TTTGCTTCTCGAGGACAGTATT 57.463 40.909 13.56 0.00 0.00 1.89
23 24 4.437239 CATTTGCTTCTCGAGGACAGTAT 58.563 43.478 13.56 3.92 0.00 2.12
24 25 3.368427 CCATTTGCTTCTCGAGGACAGTA 60.368 47.826 13.56 3.31 0.00 2.74
25 26 2.613977 CCATTTGCTTCTCGAGGACAGT 60.614 50.000 13.56 0.00 0.00 3.55
26 27 2.005451 CCATTTGCTTCTCGAGGACAG 58.995 52.381 13.56 7.66 0.00 3.51
27 28 1.347707 ACCATTTGCTTCTCGAGGACA 59.652 47.619 13.56 5.72 0.00 4.02
28 29 1.734465 CACCATTTGCTTCTCGAGGAC 59.266 52.381 13.56 2.89 0.00 3.85
29 30 1.347707 ACACCATTTGCTTCTCGAGGA 59.652 47.619 13.56 1.83 0.00 3.71
30 31 1.813513 ACACCATTTGCTTCTCGAGG 58.186 50.000 13.56 0.00 0.00 4.63
31 32 2.549754 ACAACACCATTTGCTTCTCGAG 59.450 45.455 5.93 5.93 0.00 4.04
32 33 2.571212 ACAACACCATTTGCTTCTCGA 58.429 42.857 0.00 0.00 0.00 4.04
33 34 3.249799 TGTACAACACCATTTGCTTCTCG 59.750 43.478 0.00 0.00 0.00 4.04
34 35 4.829064 TGTACAACACCATTTGCTTCTC 57.171 40.909 0.00 0.00 0.00 2.87
35 36 4.826733 TCATGTACAACACCATTTGCTTCT 59.173 37.500 0.00 0.00 0.00 2.85
36 37 5.119931 TCATGTACAACACCATTTGCTTC 57.880 39.130 0.00 0.00 0.00 3.86
37 38 5.528043 TTCATGTACAACACCATTTGCTT 57.472 34.783 0.00 0.00 0.00 3.91
38 39 5.726980 ATTCATGTACAACACCATTTGCT 57.273 34.783 0.00 0.00 0.00 3.91
39 40 7.598493 AGTTAATTCATGTACAACACCATTTGC 59.402 33.333 0.00 0.00 0.00 3.68
40 41 9.474920 AAGTTAATTCATGTACAACACCATTTG 57.525 29.630 0.00 0.00 0.00 2.32
44 45 8.952278 GGATAAGTTAATTCATGTACAACACCA 58.048 33.333 0.00 0.00 0.00 4.17
45 46 9.174166 AGGATAAGTTAATTCATGTACAACACC 57.826 33.333 0.00 0.00 0.00 4.16
46 47 9.988350 CAGGATAAGTTAATTCATGTACAACAC 57.012 33.333 0.00 0.00 0.00 3.32
47 48 8.673711 GCAGGATAAGTTAATTCATGTACAACA 58.326 33.333 0.00 0.00 0.00 3.33
48 49 8.893727 AGCAGGATAAGTTAATTCATGTACAAC 58.106 33.333 0.00 0.00 0.00 3.32
50 51 9.764363 CTAGCAGGATAAGTTAATTCATGTACA 57.236 33.333 0.00 0.00 0.00 2.90
51 52 9.982651 TCTAGCAGGATAAGTTAATTCATGTAC 57.017 33.333 0.00 0.00 0.00 2.90
73 74 8.035394 TCCACTCACTACAAAAGCTAAATCTAG 58.965 37.037 0.00 0.00 0.00 2.43
74 75 7.903145 TCCACTCACTACAAAAGCTAAATCTA 58.097 34.615 0.00 0.00 0.00 1.98
75 76 6.769512 TCCACTCACTACAAAAGCTAAATCT 58.230 36.000 0.00 0.00 0.00 2.40
76 77 7.617041 ATCCACTCACTACAAAAGCTAAATC 57.383 36.000 0.00 0.00 0.00 2.17
77 78 7.665559 TCAATCCACTCACTACAAAAGCTAAAT 59.334 33.333 0.00 0.00 0.00 1.40
78 79 6.995686 TCAATCCACTCACTACAAAAGCTAAA 59.004 34.615 0.00 0.00 0.00 1.85
79 80 6.530120 TCAATCCACTCACTACAAAAGCTAA 58.470 36.000 0.00 0.00 0.00 3.09
80 81 6.109156 TCAATCCACTCACTACAAAAGCTA 57.891 37.500 0.00 0.00 0.00 3.32
81 82 4.973168 TCAATCCACTCACTACAAAAGCT 58.027 39.130 0.00 0.00 0.00 3.74
82 83 5.412594 TCATCAATCCACTCACTACAAAAGC 59.587 40.000 0.00 0.00 0.00 3.51
83 84 7.621428 ATCATCAATCCACTCACTACAAAAG 57.379 36.000 0.00 0.00 0.00 2.27
84 85 7.615582 GATCATCAATCCACTCACTACAAAA 57.384 36.000 0.00 0.00 0.00 2.44
98 99 6.382869 AAAACATTCGGAGGATCATCAATC 57.617 37.500 9.94 0.00 36.25 2.67
99 100 7.056635 AGTAAAACATTCGGAGGATCATCAAT 58.943 34.615 9.94 0.00 36.25 2.57
100 101 6.414732 AGTAAAACATTCGGAGGATCATCAA 58.585 36.000 9.94 0.00 36.25 2.57
101 102 5.989477 AGTAAAACATTCGGAGGATCATCA 58.011 37.500 9.94 0.00 36.25 3.07
102 103 6.927294 AAGTAAAACATTCGGAGGATCATC 57.073 37.500 0.00 0.00 36.25 2.92
103 104 7.112779 AGAAAGTAAAACATTCGGAGGATCAT 58.887 34.615 0.00 0.00 36.25 2.45
104 105 6.472887 AGAAAGTAAAACATTCGGAGGATCA 58.527 36.000 0.00 0.00 36.25 2.92
105 106 6.986904 AGAAAGTAAAACATTCGGAGGATC 57.013 37.500 0.00 0.00 31.72 3.36
106 107 7.593825 CAAAGAAAGTAAAACATTCGGAGGAT 58.406 34.615 0.00 0.00 31.72 3.24
107 108 6.514376 GCAAAGAAAGTAAAACATTCGGAGGA 60.514 38.462 0.00 0.00 31.72 3.71
108 109 5.629435 GCAAAGAAAGTAAAACATTCGGAGG 59.371 40.000 0.00 0.00 31.72 4.30
109 110 6.360681 CAGCAAAGAAAGTAAAACATTCGGAG 59.639 38.462 0.00 0.00 31.72 4.63
110 111 6.205784 CAGCAAAGAAAGTAAAACATTCGGA 58.794 36.000 0.00 0.00 31.72 4.55
111 112 5.402270 CCAGCAAAGAAAGTAAAACATTCGG 59.598 40.000 0.00 0.00 31.72 4.30
112 113 6.205784 TCCAGCAAAGAAAGTAAAACATTCG 58.794 36.000 0.00 0.00 31.72 3.34
113 114 7.653311 ACATCCAGCAAAGAAAGTAAAACATTC 59.347 33.333 0.00 0.00 0.00 2.67
114 115 7.500141 ACATCCAGCAAAGAAAGTAAAACATT 58.500 30.769 0.00 0.00 0.00 2.71
115 116 7.054491 ACATCCAGCAAAGAAAGTAAAACAT 57.946 32.000 0.00 0.00 0.00 2.71
116 117 6.463995 ACATCCAGCAAAGAAAGTAAAACA 57.536 33.333 0.00 0.00 0.00 2.83
117 118 7.649057 ACTACATCCAGCAAAGAAAGTAAAAC 58.351 34.615 0.00 0.00 0.00 2.43
118 119 7.817418 ACTACATCCAGCAAAGAAAGTAAAA 57.183 32.000 0.00 0.00 0.00 1.52
119 120 7.817418 AACTACATCCAGCAAAGAAAGTAAA 57.183 32.000 0.00 0.00 0.00 2.01
120 121 7.119262 GCTAACTACATCCAGCAAAGAAAGTAA 59.881 37.037 0.00 0.00 34.13 2.24
121 122 6.594159 GCTAACTACATCCAGCAAAGAAAGTA 59.406 38.462 0.00 0.00 34.13 2.24
122 123 5.412904 GCTAACTACATCCAGCAAAGAAAGT 59.587 40.000 0.00 0.00 34.13 2.66
123 124 5.446473 CGCTAACTACATCCAGCAAAGAAAG 60.446 44.000 0.00 0.00 33.55 2.62
124 125 4.391830 CGCTAACTACATCCAGCAAAGAAA 59.608 41.667 0.00 0.00 33.55 2.52
125 126 3.932710 CGCTAACTACATCCAGCAAAGAA 59.067 43.478 0.00 0.00 33.55 2.52
126 127 3.056107 ACGCTAACTACATCCAGCAAAGA 60.056 43.478 0.00 0.00 33.55 2.52
127 128 3.262420 ACGCTAACTACATCCAGCAAAG 58.738 45.455 0.00 0.00 33.55 2.77
128 129 3.328382 ACGCTAACTACATCCAGCAAA 57.672 42.857 0.00 0.00 33.55 3.68
129 130 3.328382 AACGCTAACTACATCCAGCAA 57.672 42.857 0.00 0.00 33.55 3.91
130 131 4.098807 TGATAACGCTAACTACATCCAGCA 59.901 41.667 0.00 0.00 33.55 4.41
131 132 4.444720 GTGATAACGCTAACTACATCCAGC 59.555 45.833 0.00 0.00 0.00 4.85
132 133 5.588240 TGTGATAACGCTAACTACATCCAG 58.412 41.667 0.00 0.00 0.00 3.86
133 134 5.585820 TGTGATAACGCTAACTACATCCA 57.414 39.130 0.00 0.00 0.00 3.41
134 135 5.107453 GCATGTGATAACGCTAACTACATCC 60.107 44.000 0.00 0.00 0.00 3.51
135 136 5.462068 TGCATGTGATAACGCTAACTACATC 59.538 40.000 0.00 0.00 0.00 3.06
136 137 5.356426 TGCATGTGATAACGCTAACTACAT 58.644 37.500 0.00 0.00 0.00 2.29
137 138 4.749976 TGCATGTGATAACGCTAACTACA 58.250 39.130 0.00 0.00 0.00 2.74
138 139 5.712217 TTGCATGTGATAACGCTAACTAC 57.288 39.130 0.00 0.00 0.00 2.73
139 140 5.639931 TGTTTGCATGTGATAACGCTAACTA 59.360 36.000 0.00 0.00 39.66 2.24
140 141 4.454161 TGTTTGCATGTGATAACGCTAACT 59.546 37.500 0.00 0.00 39.66 2.24
141 142 4.717991 TGTTTGCATGTGATAACGCTAAC 58.282 39.130 0.00 0.00 39.48 2.34
142 143 4.671508 GCTGTTTGCATGTGATAACGCTAA 60.672 41.667 0.00 0.00 42.31 3.09
143 144 3.181511 GCTGTTTGCATGTGATAACGCTA 60.182 43.478 0.00 0.00 42.31 4.26
144 145 2.414559 GCTGTTTGCATGTGATAACGCT 60.415 45.455 0.00 0.00 42.31 5.07
145 146 1.913403 GCTGTTTGCATGTGATAACGC 59.087 47.619 0.00 0.00 42.31 4.84
160 161 5.869649 AATTGGTCCTAAAACTTGCTGTT 57.130 34.783 0.00 0.00 41.29 3.16
161 162 7.539034 AATAATTGGTCCTAAAACTTGCTGT 57.461 32.000 0.00 0.00 0.00 4.40
162 163 8.711457 CAAAATAATTGGTCCTAAAACTTGCTG 58.289 33.333 0.00 0.00 0.00 4.41
163 164 7.877612 CCAAAATAATTGGTCCTAAAACTTGCT 59.122 33.333 0.00 0.00 34.92 3.91
164 165 7.360861 GCCAAAATAATTGGTCCTAAAACTTGC 60.361 37.037 8.84 0.00 41.53 4.01
165 166 7.659390 TGCCAAAATAATTGGTCCTAAAACTTG 59.341 33.333 8.84 0.00 41.53 3.16
166 167 7.740805 TGCCAAAATAATTGGTCCTAAAACTT 58.259 30.769 8.84 0.00 41.53 2.66
167 168 7.016170 ACTGCCAAAATAATTGGTCCTAAAACT 59.984 33.333 8.84 0.00 41.53 2.66
168 169 7.158697 ACTGCCAAAATAATTGGTCCTAAAAC 58.841 34.615 8.84 0.00 41.53 2.43
169 170 7.309770 ACTGCCAAAATAATTGGTCCTAAAA 57.690 32.000 8.84 0.00 41.53 1.52
170 171 6.926630 ACTGCCAAAATAATTGGTCCTAAA 57.073 33.333 8.84 0.00 41.53 1.85
171 172 6.926630 AACTGCCAAAATAATTGGTCCTAA 57.073 33.333 8.84 0.00 41.53 2.69
172 173 6.926630 AAACTGCCAAAATAATTGGTCCTA 57.073 33.333 8.84 0.00 41.53 2.94
173 174 5.823861 AAACTGCCAAAATAATTGGTCCT 57.176 34.783 8.84 0.00 41.53 3.85
174 175 7.971183 TTTAAACTGCCAAAATAATTGGTCC 57.029 32.000 8.84 0.00 41.53 4.46
197 198 2.292257 GGGGAGGAGGTGGCTTATTTTT 60.292 50.000 0.00 0.00 0.00 1.94
198 199 1.288037 GGGGAGGAGGTGGCTTATTTT 59.712 52.381 0.00 0.00 0.00 1.82
199 200 0.927029 GGGGAGGAGGTGGCTTATTT 59.073 55.000 0.00 0.00 0.00 1.40
200 201 0.253630 TGGGGAGGAGGTGGCTTATT 60.254 55.000 0.00 0.00 0.00 1.40
201 202 0.695803 CTGGGGAGGAGGTGGCTTAT 60.696 60.000 0.00 0.00 0.00 1.73
202 203 1.306997 CTGGGGAGGAGGTGGCTTA 60.307 63.158 0.00 0.00 0.00 3.09
203 204 2.612115 CTGGGGAGGAGGTGGCTT 60.612 66.667 0.00 0.00 0.00 4.35
206 207 1.793820 AAAAGCTGGGGAGGAGGTGG 61.794 60.000 0.00 0.00 0.00 4.61
207 208 0.322906 GAAAAGCTGGGGAGGAGGTG 60.323 60.000 0.00 0.00 0.00 4.00
208 209 1.501654 GGAAAAGCTGGGGAGGAGGT 61.502 60.000 0.00 0.00 0.00 3.85
209 210 1.210885 AGGAAAAGCTGGGGAGGAGG 61.211 60.000 0.00 0.00 0.00 4.30
210 211 1.584724 TAGGAAAAGCTGGGGAGGAG 58.415 55.000 0.00 0.00 0.00 3.69
211 212 2.286935 ATAGGAAAAGCTGGGGAGGA 57.713 50.000 0.00 0.00 0.00 3.71
212 213 3.748989 GCTTATAGGAAAAGCTGGGGAGG 60.749 52.174 0.00 0.00 44.75 4.30
213 214 3.481453 GCTTATAGGAAAAGCTGGGGAG 58.519 50.000 0.00 0.00 44.75 4.30
214 215 2.174854 GGCTTATAGGAAAAGCTGGGGA 59.825 50.000 7.65 0.00 46.81 4.81
215 216 2.091885 TGGCTTATAGGAAAAGCTGGGG 60.092 50.000 7.65 0.00 46.81 4.96
216 217 3.297134 TGGCTTATAGGAAAAGCTGGG 57.703 47.619 7.65 0.00 46.81 4.45
217 218 4.723309 AGATGGCTTATAGGAAAAGCTGG 58.277 43.478 7.65 0.00 46.81 4.85
218 219 5.619220 AGAGATGGCTTATAGGAAAAGCTG 58.381 41.667 7.65 0.00 46.81 4.24
219 220 5.606329 AGAGAGATGGCTTATAGGAAAAGCT 59.394 40.000 7.65 0.00 46.81 3.74
220 221 5.863965 AGAGAGATGGCTTATAGGAAAAGC 58.136 41.667 0.00 0.00 46.90 3.51
223 224 9.159254 TGAATAAGAGAGATGGCTTATAGGAAA 57.841 33.333 0.00 0.00 36.56 3.13
224 225 8.727100 TGAATAAGAGAGATGGCTTATAGGAA 57.273 34.615 0.00 0.00 36.56 3.36
225 226 8.907829 ATGAATAAGAGAGATGGCTTATAGGA 57.092 34.615 0.00 0.00 36.56 2.94
226 227 9.381033 CAATGAATAAGAGAGATGGCTTATAGG 57.619 37.037 0.00 0.00 36.56 2.57
227 228 9.381033 CCAATGAATAAGAGAGATGGCTTATAG 57.619 37.037 0.00 0.00 36.56 1.31
228 229 8.324306 CCCAATGAATAAGAGAGATGGCTTATA 58.676 37.037 0.00 0.00 36.56 0.98
229 230 7.017950 TCCCAATGAATAAGAGAGATGGCTTAT 59.982 37.037 0.00 0.00 38.57 1.73
230 231 6.329986 TCCCAATGAATAAGAGAGATGGCTTA 59.670 38.462 0.00 0.00 0.00 3.09
231 232 5.133322 TCCCAATGAATAAGAGAGATGGCTT 59.867 40.000 0.00 0.00 0.00 4.35
232 233 4.662179 TCCCAATGAATAAGAGAGATGGCT 59.338 41.667 0.00 0.00 0.00 4.75
233 234 4.759183 GTCCCAATGAATAAGAGAGATGGC 59.241 45.833 0.00 0.00 0.00 4.40
234 235 6.185114 AGTCCCAATGAATAAGAGAGATGG 57.815 41.667 0.00 0.00 0.00 3.51
235 236 7.507829 AGAAGTCCCAATGAATAAGAGAGATG 58.492 38.462 0.00 0.00 0.00 2.90
236 237 7.688918 AGAAGTCCCAATGAATAAGAGAGAT 57.311 36.000 0.00 0.00 0.00 2.75
237 238 8.609617 TTAGAAGTCCCAATGAATAAGAGAGA 57.390 34.615 0.00 0.00 0.00 3.10
238 239 9.103861 GTTTAGAAGTCCCAATGAATAAGAGAG 57.896 37.037 0.00 0.00 0.00 3.20
239 240 8.826765 AGTTTAGAAGTCCCAATGAATAAGAGA 58.173 33.333 0.00 0.00 0.00 3.10
242 243 9.892130 ACTAGTTTAGAAGTCCCAATGAATAAG 57.108 33.333 0.00 0.00 0.00 1.73
246 247 9.667107 CATAACTAGTTTAGAAGTCCCAATGAA 57.333 33.333 14.49 0.00 0.00 2.57
247 248 8.265055 CCATAACTAGTTTAGAAGTCCCAATGA 58.735 37.037 14.49 0.00 0.00 2.57
248 249 8.265055 TCCATAACTAGTTTAGAAGTCCCAATG 58.735 37.037 14.49 6.53 0.00 2.82
249 250 8.388656 TCCATAACTAGTTTAGAAGTCCCAAT 57.611 34.615 14.49 0.00 0.00 3.16
250 251 7.801893 TCCATAACTAGTTTAGAAGTCCCAA 57.198 36.000 14.49 0.00 0.00 4.12
251 252 7.801893 TTCCATAACTAGTTTAGAAGTCCCA 57.198 36.000 14.49 0.00 0.00 4.37
281 282 9.546428 CCCAAAATTTGTTGAGACTTCTAAATT 57.454 29.630 4.92 0.00 31.31 1.82
282 283 8.923270 TCCCAAAATTTGTTGAGACTTCTAAAT 58.077 29.630 4.92 0.00 0.00 1.40
283 284 8.299990 TCCCAAAATTTGTTGAGACTTCTAAA 57.700 30.769 4.92 0.00 0.00 1.85
284 285 7.889873 TCCCAAAATTTGTTGAGACTTCTAA 57.110 32.000 4.92 0.00 0.00 2.10
285 286 7.039784 CCATCCCAAAATTTGTTGAGACTTCTA 60.040 37.037 4.92 0.00 0.00 2.10
286 287 6.239402 CCATCCCAAAATTTGTTGAGACTTCT 60.239 38.462 4.92 0.00 0.00 2.85
287 288 5.928264 CCATCCCAAAATTTGTTGAGACTTC 59.072 40.000 4.92 0.00 0.00 3.01
288 289 5.742838 GCCATCCCAAAATTTGTTGAGACTT 60.743 40.000 4.92 0.00 0.00 3.01
289 290 4.262592 GCCATCCCAAAATTTGTTGAGACT 60.263 41.667 4.92 0.00 0.00 3.24
290 291 3.996363 GCCATCCCAAAATTTGTTGAGAC 59.004 43.478 4.92 0.00 0.00 3.36
291 292 3.903090 AGCCATCCCAAAATTTGTTGAGA 59.097 39.130 4.92 0.00 0.00 3.27
292 293 4.276058 AGCCATCCCAAAATTTGTTGAG 57.724 40.909 4.92 0.00 0.00 3.02
293 294 4.703379 AAGCCATCCCAAAATTTGTTGA 57.297 36.364 4.92 1.69 0.00 3.18
294 295 7.451501 AAATAAGCCATCCCAAAATTTGTTG 57.548 32.000 4.92 0.13 0.00 3.33
295 296 8.476064 AAAAATAAGCCATCCCAAAATTTGTT 57.524 26.923 4.92 0.00 0.00 2.83
343 344 5.277925 CCGGTTCTTTTAGACGGCTTAAAAA 60.278 40.000 0.00 0.00 37.93 1.94
344 345 4.213906 CCGGTTCTTTTAGACGGCTTAAAA 59.786 41.667 0.00 0.42 37.93 1.52
345 346 3.747529 CCGGTTCTTTTAGACGGCTTAAA 59.252 43.478 0.00 0.00 37.93 1.52
346 347 3.328505 CCGGTTCTTTTAGACGGCTTAA 58.671 45.455 0.00 0.00 37.93 1.85
347 348 2.963432 CCGGTTCTTTTAGACGGCTTA 58.037 47.619 0.00 0.00 37.93 3.09
348 349 1.804601 CCGGTTCTTTTAGACGGCTT 58.195 50.000 0.00 0.00 37.93 4.35
349 350 3.527434 CCGGTTCTTTTAGACGGCT 57.473 52.632 0.00 0.00 37.93 5.52
351 352 1.022982 GGGCCGGTTCTTTTAGACGG 61.023 60.000 1.90 0.00 46.78 4.79
352 353 0.036671 AGGGCCGGTTCTTTTAGACG 60.037 55.000 1.90 0.00 0.00 4.18
353 354 2.195741 AAGGGCCGGTTCTTTTAGAC 57.804 50.000 1.90 0.00 0.00 2.59
354 355 2.908351 ACTAAGGGCCGGTTCTTTTAGA 59.092 45.455 14.75 0.00 0.00 2.10
355 356 3.345508 ACTAAGGGCCGGTTCTTTTAG 57.654 47.619 14.75 12.11 0.00 1.85
356 357 3.181441 ACAACTAAGGGCCGGTTCTTTTA 60.181 43.478 14.75 2.38 0.00 1.52
357 358 2.235891 CAACTAAGGGCCGGTTCTTTT 58.764 47.619 14.75 4.10 0.00 2.27
358 359 1.144298 ACAACTAAGGGCCGGTTCTTT 59.856 47.619 14.75 7.86 0.00 2.52
359 360 0.769247 ACAACTAAGGGCCGGTTCTT 59.231 50.000 1.90 9.94 0.00 2.52
360 361 1.553704 CTACAACTAAGGGCCGGTTCT 59.446 52.381 1.90 0.00 0.00 3.01
361 362 1.406477 CCTACAACTAAGGGCCGGTTC 60.406 57.143 1.90 0.00 0.00 3.62
362 363 0.616891 CCTACAACTAAGGGCCGGTT 59.383 55.000 1.90 2.07 0.00 4.44
363 364 0.252375 TCCTACAACTAAGGGCCGGT 60.252 55.000 1.90 0.00 34.66 5.28
364 365 0.906775 TTCCTACAACTAAGGGCCGG 59.093 55.000 0.00 0.00 34.66 6.13
365 366 2.773993 TTTCCTACAACTAAGGGCCG 57.226 50.000 0.00 0.00 34.66 6.13
408 409 9.695526 CTGAAAATATGACCACATTCTCAAAAA 57.304 29.630 0.00 0.00 37.87 1.94
409 410 9.076781 TCTGAAAATATGACCACATTCTCAAAA 57.923 29.630 0.00 0.00 37.87 2.44
410 411 8.634335 TCTGAAAATATGACCACATTCTCAAA 57.366 30.769 0.00 0.00 37.87 2.69
411 412 8.812513 ATCTGAAAATATGACCACATTCTCAA 57.187 30.769 0.00 0.00 37.87 3.02
455 456 1.065928 GTGATCGGACGGCTGTAGG 59.934 63.158 0.00 0.00 0.00 3.18
489 491 0.930310 ACGTGATCGGATTGCATTCG 59.070 50.000 2.69 0.52 41.85 3.34
555 565 2.286523 CCTGTCCCTTCTCGTGGCT 61.287 63.158 0.00 0.00 0.00 4.75
646 656 4.220163 TAGCGAGGAGGGGGCGAT 62.220 66.667 0.00 0.00 0.00 4.58
902 912 3.188786 GCACTACCTTGAGCGGCG 61.189 66.667 0.51 0.51 0.00 6.46
1005 1015 4.560427 CAGACTCACTTGTACATGACATCG 59.440 45.833 15.13 0.00 38.07 3.84
1036 1047 2.177016 AGCAAGGTAAAAGGGACAAGGT 59.823 45.455 0.00 0.00 0.00 3.50
1039 1050 3.486383 CAGAGCAAGGTAAAAGGGACAA 58.514 45.455 0.00 0.00 0.00 3.18
1043 1054 1.815003 CAGCAGAGCAAGGTAAAAGGG 59.185 52.381 0.00 0.00 0.00 3.95
1090 1102 1.965930 GCACGGCAACCTCATGTGA 60.966 57.895 0.00 0.00 32.39 3.58
1137 1151 2.295909 GCCAGTGGTGCTCAAATTAACA 59.704 45.455 11.74 0.00 0.00 2.41
1264 1278 4.098501 ACATGTGCATCTCTTGTCTATCGA 59.901 41.667 0.00 0.00 0.00 3.59
1353 1367 7.487509 CAGATAGCCTCATGAGTATAAATGACG 59.512 40.741 21.11 3.19 0.00 4.35
1385 1399 2.393271 CTGACCATTCCAGGACTCAC 57.607 55.000 0.00 0.00 0.00 3.51
1517 1532 2.416547 CGATGTTTGCACCCACTAGAAG 59.583 50.000 0.00 0.00 0.00 2.85
1538 1553 4.006319 GGCCTATGAGCAGGTTATGATTC 58.994 47.826 0.00 0.00 38.05 2.52
1550 1565 2.206536 AGCGGAGAGGCCTATGAGC 61.207 63.158 3.53 10.35 0.00 4.26
1551 1566 1.112315 ACAGCGGAGAGGCCTATGAG 61.112 60.000 3.53 0.00 0.00 2.90
1552 1567 0.687757 AACAGCGGAGAGGCCTATGA 60.688 55.000 3.53 0.00 0.00 2.15
1677 1692 1.152271 TCCTCTCCTTCCCCTTTCACT 59.848 52.381 0.00 0.00 0.00 3.41
1740 1755 5.174395 CACCCTTCTTCATAGACTGACAAG 58.826 45.833 0.00 0.00 32.17 3.16
1836 1851 0.732571 AACAGACACAGCCAACAACG 59.267 50.000 0.00 0.00 0.00 4.10
1933 1948 3.725740 GCACATGTTGAAAAGTTGTCTCG 59.274 43.478 0.00 0.00 0.00 4.04
1938 1953 5.527511 TTTGTGCACATGTTGAAAAGTTG 57.472 34.783 22.39 0.00 0.00 3.16
2005 2020 1.357690 CAGCAATGCGCAGGGTATG 59.642 57.895 18.32 10.66 46.13 2.39
2017 2032 7.820386 TGTATTTCAATTGATTCTTGCAGCAAT 59.180 29.630 8.67 4.63 32.75 3.56
2552 2642 5.129650 AGAGAGCCAGGGATAAAGTAAACTC 59.870 44.000 0.00 0.00 0.00 3.01
2564 2654 0.906756 CCACTTGAGAGAGCCAGGGA 60.907 60.000 0.00 0.00 0.00 4.20
2581 2671 2.170397 TCTCTCAGTCAGCACAAAACCA 59.830 45.455 0.00 0.00 0.00 3.67
2601 2691 1.063174 GCAAGATGATGGCACGAGTTC 59.937 52.381 0.00 0.00 0.00 3.01
2605 2695 4.223800 GGCAAGATGATGGCACGA 57.776 55.556 0.00 0.00 44.66 4.35
2718 2814 5.769662 TGTGAATTGCTTGGAAGTTAGACAT 59.230 36.000 0.00 0.00 0.00 3.06
2719 2815 5.129634 TGTGAATTGCTTGGAAGTTAGACA 58.870 37.500 0.00 0.00 0.00 3.41
2720 2816 5.689383 TGTGAATTGCTTGGAAGTTAGAC 57.311 39.130 0.00 0.00 0.00 2.59
2721 2817 6.707440 TTTGTGAATTGCTTGGAAGTTAGA 57.293 33.333 0.00 0.00 0.00 2.10
2722 2818 8.299570 ACTATTTGTGAATTGCTTGGAAGTTAG 58.700 33.333 0.00 0.00 0.00 2.34
2978 3079 3.662247 ATTCGGATCGGAGGTTGTATC 57.338 47.619 2.99 0.00 0.00 2.24
2983 3084 5.031066 TCAATTAATTCGGATCGGAGGTT 57.969 39.130 0.00 5.83 0.00 3.50
2984 3085 4.344102 TCTCAATTAATTCGGATCGGAGGT 59.656 41.667 0.00 0.00 0.00 3.85
3006 3107 2.216898 GGACATTGCATAGAGGCTGTC 58.783 52.381 0.00 1.25 37.90 3.51
3050 3151 4.101898 TCCCTCCGATCCGAATTAATTGAA 59.898 41.667 5.17 0.00 0.00 2.69
3160 3261 1.857217 GCGCAGACTGACATGACATAG 59.143 52.381 6.65 0.00 0.00 2.23
3167 3268 0.593128 GGTTTTGCGCAGACTGACAT 59.407 50.000 20.64 0.00 0.00 3.06
3169 3270 0.317020 GTGGTTTTGCGCAGACTGAC 60.317 55.000 20.64 15.12 0.00 3.51
3351 3452 9.787532 TGCAAACTGAAATTATATTTAGAGTGC 57.212 29.630 0.00 0.00 33.85 4.40
3380 3481 6.013842 GCAGGTCATACTTGCTTTAAAGTT 57.986 37.500 16.38 2.23 46.18 2.66
3429 3530 4.869861 AGCAATTTGGACTTGTGAAAACAC 59.130 37.500 0.00 0.00 0.00 3.32
3462 3563 7.726033 AACTCTAAATCTCATGTACTCAGGT 57.274 36.000 0.00 0.00 0.00 4.00
3598 3699 8.719596 TGGATATTAGTTGCATTCCCTAACTTA 58.280 33.333 0.00 0.00 36.22 2.24
3924 4028 4.833390 ACTCATTTAGTTGGCTAGTGGAC 58.167 43.478 0.00 0.00 33.35 4.02
3941 4045 8.321353 TGAACTCATACCTGTAAATGAACTCAT 58.679 33.333 0.00 0.00 38.41 2.90
3942 4046 7.676004 TGAACTCATACCTGTAAATGAACTCA 58.324 34.615 0.00 0.00 31.97 3.41
3943 4047 8.723942 ATGAACTCATACCTGTAAATGAACTC 57.276 34.615 0.00 0.00 34.26 3.01
3944 4048 9.520515 AAATGAACTCATACCTGTAAATGAACT 57.479 29.630 0.00 0.00 35.10 3.01
3950 4054 9.952030 TCACATAAATGAACTCATACCTGTAAA 57.048 29.630 0.00 0.00 35.10 2.01
3951 4055 9.952030 TTCACATAAATGAACTCATACCTGTAA 57.048 29.630 0.00 0.00 35.10 2.41
3953 4057 8.896744 CATTCACATAAATGAACTCATACCTGT 58.103 33.333 0.00 0.00 41.29 4.00
3954 4058 9.112725 TCATTCACATAAATGAACTCATACCTG 57.887 33.333 0.00 0.00 41.47 4.00
3955 4059 9.113838 GTCATTCACATAAATGAACTCATACCT 57.886 33.333 1.17 0.00 44.83 3.08
3956 4060 8.892723 TGTCATTCACATAAATGAACTCATACC 58.107 33.333 1.17 0.00 44.83 2.73
4068 4187 7.231317 CACACCAATATAAGCCCTTCATTATGT 59.769 37.037 0.00 0.00 0.00 2.29
4070 4189 7.231317 CACACACCAATATAAGCCCTTCATTAT 59.769 37.037 0.00 0.00 0.00 1.28
4119 4238 3.063510 AGTTGATGGTGAGTGGTCATG 57.936 47.619 0.00 0.00 34.36 3.07
4120 4239 3.181440 ACAAGTTGATGGTGAGTGGTCAT 60.181 43.478 10.54 0.00 34.36 3.06
4224 4343 2.494059 ACACCAACTTCGGATTCACAG 58.506 47.619 0.00 0.00 0.00 3.66
4277 4397 9.565090 TTTGAGAGAGCATATAATAAGCACAAT 57.435 29.630 0.00 0.00 0.00 2.71
4284 4404 7.173907 GCTGGCTTTTGAGAGAGCATATAATAA 59.826 37.037 0.00 0.00 40.63 1.40
4285 4405 6.652481 GCTGGCTTTTGAGAGAGCATATAATA 59.348 38.462 0.00 0.00 40.63 0.98
4286 4406 5.472820 GCTGGCTTTTGAGAGAGCATATAAT 59.527 40.000 0.00 0.00 40.63 1.28
4463 4586 6.126409 TCCAACCAAGAAAGACTAACACATT 58.874 36.000 0.00 0.00 0.00 2.71
4544 4667 8.682710 GTCATTCAGCAAATATACCAAACCTTA 58.317 33.333 0.00 0.00 0.00 2.69
4568 4691 7.428020 TGCTTCAAGAAATATTATGCCATGTC 58.572 34.615 0.00 0.00 0.00 3.06
4612 4736 7.771183 ACAAAATGAGATACGGCATAACAAAT 58.229 30.769 0.00 0.00 0.00 2.32
4651 4775 5.479306 TGGAAATGAGAAAGTTCGACTAGG 58.521 41.667 0.00 0.00 33.59 3.02
4684 4808 5.644636 TGTTATTTCCACGTATTTGTCCTCC 59.355 40.000 0.00 0.00 0.00 4.30
4729 4853 6.540189 CCTTTGTCCCTCTGTAGTTTGATATG 59.460 42.308 0.00 0.00 0.00 1.78
4780 4912 5.405571 TGTTTAAGATGAAGAAGACTGACGC 59.594 40.000 0.00 0.00 0.00 5.19
4804 4936 2.071778 AAGACACACAAACCAGGCAT 57.928 45.000 0.00 0.00 0.00 4.40
4807 4939 4.362279 CATGAAAAGACACACAAACCAGG 58.638 43.478 0.00 0.00 0.00 4.45
4810 4942 4.044426 GAGCATGAAAAGACACACAAACC 58.956 43.478 0.00 0.00 0.00 3.27
4814 4946 7.361201 GCTTAATAGAGCATGAAAAGACACACA 60.361 37.037 0.00 0.00 42.25 3.72
5195 5332 7.801783 GCTCAGTTATTTGGTTGTTACAACTAC 59.198 37.037 24.67 11.88 34.58 2.73
5384 5528 7.437793 CCAGAAACAAACATAATGGCAAAAT 57.562 32.000 0.00 0.00 0.00 1.82
5427 5572 9.247861 AGATTAGGATTTCTTAGTGCATTGTTT 57.752 29.630 0.00 0.00 0.00 2.83
5533 5680 3.769300 GCAACACTTTCCCCAATAATCCT 59.231 43.478 0.00 0.00 0.00 3.24
5632 5781 4.327010 GCCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 44.48 4.20
5633 5782 3.970640 GCCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 3.52 44.52 4.30
5634 5783 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
5635 5784 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
5636 5785 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
5637 5786 6.465035 GCATTAGGCCCTATATAGATGGAAGG 60.465 46.154 11.53 3.94 36.11 3.46
5638 5787 6.529220 GCATTAGGCCCTATATAGATGGAAG 58.471 44.000 11.53 0.00 36.11 3.46
5639 5788 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
5640 5789 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
5641 5790 4.345257 ACGCATTAGGCCCTATATAGATGG 59.655 45.833 11.53 6.04 40.31 3.51
5642 5791 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
5643 5792 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
5644 5793 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
5645 5794 6.183360 CGAAAAACGCATTAGGCCCTATATAG 60.183 42.308 0.00 2.46 40.31 1.31
5646 5795 5.640357 CGAAAAACGCATTAGGCCCTATATA 59.360 40.000 0.00 0.00 40.31 0.86
5647 5796 4.454504 CGAAAAACGCATTAGGCCCTATAT 59.545 41.667 0.00 0.00 40.31 0.86
5648 5797 3.810941 CGAAAAACGCATTAGGCCCTATA 59.189 43.478 0.00 0.00 40.31 1.31
5649 5798 2.616842 CGAAAAACGCATTAGGCCCTAT 59.383 45.455 0.00 0.00 40.31 2.57
5650 5799 2.011222 CGAAAAACGCATTAGGCCCTA 58.989 47.619 0.00 0.00 40.31 3.53
5651 5800 0.808755 CGAAAAACGCATTAGGCCCT 59.191 50.000 0.00 0.00 40.31 5.19
5652 5801 0.806241 TCGAAAAACGCATTAGGCCC 59.194 50.000 0.00 0.00 42.26 5.80
5653 5802 1.202143 CCTCGAAAAACGCATTAGGCC 60.202 52.381 0.00 0.00 42.26 5.19
5654 5803 1.794076 GCCTCGAAAAACGCATTAGGC 60.794 52.381 0.00 0.00 45.73 3.93
5655 5804 1.737793 AGCCTCGAAAAACGCATTAGG 59.262 47.619 0.00 0.00 42.26 2.69
5656 5805 4.092968 AGTTAGCCTCGAAAAACGCATTAG 59.907 41.667 0.00 0.00 42.26 1.73
5657 5806 3.998341 AGTTAGCCTCGAAAAACGCATTA 59.002 39.130 0.00 0.00 42.26 1.90
5658 5807 2.812011 AGTTAGCCTCGAAAAACGCATT 59.188 40.909 0.00 0.00 42.26 3.56
5659 5808 2.423577 AGTTAGCCTCGAAAAACGCAT 58.576 42.857 0.00 0.00 42.26 4.73
5660 5809 1.873698 AGTTAGCCTCGAAAAACGCA 58.126 45.000 0.00 0.00 42.26 5.24
5661 5810 2.963498 AAGTTAGCCTCGAAAAACGC 57.037 45.000 0.00 0.00 42.26 4.84
5662 5811 4.209112 GTCAAAGTTAGCCTCGAAAAACG 58.791 43.478 0.00 0.00 44.09 3.60
5663 5812 4.035909 TGGTCAAAGTTAGCCTCGAAAAAC 59.964 41.667 0.00 0.00 0.00 2.43
5664 5813 4.200874 TGGTCAAAGTTAGCCTCGAAAAA 58.799 39.130 0.00 0.00 0.00 1.94
5665 5814 3.811083 TGGTCAAAGTTAGCCTCGAAAA 58.189 40.909 0.00 0.00 0.00 2.29
5666 5815 3.478857 TGGTCAAAGTTAGCCTCGAAA 57.521 42.857 0.00 0.00 0.00 3.46
5667 5816 3.478857 TTGGTCAAAGTTAGCCTCGAA 57.521 42.857 0.00 0.00 0.00 3.71
5668 5817 3.478857 TTTGGTCAAAGTTAGCCTCGA 57.521 42.857 0.00 0.00 0.00 4.04
5669 5818 6.436843 AATATTTGGTCAAAGTTAGCCTCG 57.563 37.500 2.55 0.00 33.32 4.63
5670 5819 8.732746 TCTAATATTTGGTCAAAGTTAGCCTC 57.267 34.615 17.32 0.00 35.14 4.70
5671 5820 7.283354 GCTCTAATATTTGGTCAAAGTTAGCCT 59.717 37.037 17.32 0.41 35.14 4.58
5672 5821 7.067008 TGCTCTAATATTTGGTCAAAGTTAGCC 59.933 37.037 17.32 13.62 35.14 3.93
5673 5822 7.985476 TGCTCTAATATTTGGTCAAAGTTAGC 58.015 34.615 17.32 13.47 35.14 3.09
5692 5841 9.948964 AGTTGCATGTCATATATTATTGCTCTA 57.051 29.630 0.00 0.00 0.00 2.43
5693 5842 8.859236 AGTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
5701 5850 9.955208 CATTGTGTAAGTTGCATGTCATATATT 57.045 29.630 0.00 0.00 0.00 1.28
5702 5851 8.077991 GCATTGTGTAAGTTGCATGTCATATAT 58.922 33.333 0.00 0.00 35.22 0.86
5703 5852 7.066766 TGCATTGTGTAAGTTGCATGTCATATA 59.933 33.333 0.00 0.00 39.98 0.86
5704 5853 6.127675 TGCATTGTGTAAGTTGCATGTCATAT 60.128 34.615 0.00 0.00 39.98 1.78
5705 5854 5.182760 TGCATTGTGTAAGTTGCATGTCATA 59.817 36.000 0.00 0.00 39.98 2.15
5706 5855 4.022155 TGCATTGTGTAAGTTGCATGTCAT 60.022 37.500 0.00 0.00 39.98 3.06
5707 5856 3.317430 TGCATTGTGTAAGTTGCATGTCA 59.683 39.130 0.00 0.00 39.98 3.58
5708 5857 3.670055 GTGCATTGTGTAAGTTGCATGTC 59.330 43.478 0.00 0.00 45.80 3.06
5709 5858 3.067883 TGTGCATTGTGTAAGTTGCATGT 59.932 39.130 0.00 0.00 45.80 3.21
5710 5859 3.426191 GTGTGCATTGTGTAAGTTGCATG 59.574 43.478 0.00 0.00 45.80 4.06
5711 5860 3.552684 GGTGTGCATTGTGTAAGTTGCAT 60.553 43.478 0.00 0.00 45.80 3.96
5712 5861 2.223688 GGTGTGCATTGTGTAAGTTGCA 60.224 45.455 0.00 0.00 42.41 4.08
5713 5862 2.393764 GGTGTGCATTGTGTAAGTTGC 58.606 47.619 0.00 0.00 35.67 4.17
5714 5863 2.032799 ACGGTGTGCATTGTGTAAGTTG 59.967 45.455 0.00 0.00 0.00 3.16
5715 5864 2.294074 ACGGTGTGCATTGTGTAAGTT 58.706 42.857 0.00 0.00 0.00 2.66
5716 5865 1.961793 ACGGTGTGCATTGTGTAAGT 58.038 45.000 0.00 0.00 0.00 2.24
5717 5866 4.475763 TTAACGGTGTGCATTGTGTAAG 57.524 40.909 0.00 0.00 0.00 2.34
5718 5867 4.895224 TTTAACGGTGTGCATTGTGTAA 57.105 36.364 0.00 0.00 0.00 2.41
5719 5868 5.008712 TGAATTTAACGGTGTGCATTGTGTA 59.991 36.000 0.00 0.00 0.00 2.90
5720 5869 4.202060 TGAATTTAACGGTGTGCATTGTGT 60.202 37.500 0.00 0.00 0.00 3.72
5721 5870 4.294232 TGAATTTAACGGTGTGCATTGTG 58.706 39.130 0.00 0.00 0.00 3.33
5722 5871 4.576216 TGAATTTAACGGTGTGCATTGT 57.424 36.364 0.00 0.00 0.00 2.71
5723 5872 4.922692 ACATGAATTTAACGGTGTGCATTG 59.077 37.500 0.00 0.00 0.00 2.82
5724 5873 4.922692 CACATGAATTTAACGGTGTGCATT 59.077 37.500 0.00 0.00 31.83 3.56
5725 5874 4.022416 ACACATGAATTTAACGGTGTGCAT 60.022 37.500 0.00 0.00 40.27 3.96
5726 5875 3.316588 ACACATGAATTTAACGGTGTGCA 59.683 39.130 0.00 0.00 40.27 4.57
5727 5876 3.668191 CACACATGAATTTAACGGTGTGC 59.332 43.478 15.23 0.00 46.19 4.57
5729 5878 5.759506 TTCACACATGAATTTAACGGTGT 57.240 34.783 0.00 0.00 40.01 4.16
5730 5879 5.629020 CCTTTCACACATGAATTTAACGGTG 59.371 40.000 0.00 0.00 44.36 4.94
5731 5880 5.533154 TCCTTTCACACATGAATTTAACGGT 59.467 36.000 0.00 0.00 44.36 4.83
5732 5881 6.007936 TCCTTTCACACATGAATTTAACGG 57.992 37.500 0.00 0.00 44.36 4.44
5733 5882 6.668323 ACTCCTTTCACACATGAATTTAACG 58.332 36.000 0.00 0.00 44.36 3.18
5734 5883 8.871686 AAACTCCTTTCACACATGAATTTAAC 57.128 30.769 0.00 0.00 44.36 2.01
5735 5884 9.528018 GAAAACTCCTTTCACACATGAATTTAA 57.472 29.630 0.00 0.00 44.36 1.52
5736 5885 8.690884 TGAAAACTCCTTTCACACATGAATTTA 58.309 29.630 0.00 0.00 46.80 1.40
5737 5886 7.555087 TGAAAACTCCTTTCACACATGAATTT 58.445 30.769 0.00 0.00 46.80 1.82
5738 5887 7.111247 TGAAAACTCCTTTCACACATGAATT 57.889 32.000 0.00 0.00 46.80 2.17
5739 5888 6.713762 TGAAAACTCCTTTCACACATGAAT 57.286 33.333 0.00 0.00 46.80 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.