Multiple sequence alignment - TraesCS3A01G225100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G225100 chr3A 100.000 4968 0 0 1 4968 421723510 421718543 0.000000e+00 9175.0
1 TraesCS3A01G225100 chr3A 79.064 769 145 13 2661 3421 15075182 15075942 9.540000e-142 514.0
2 TraesCS3A01G225100 chr3A 88.333 240 25 3 4331 4567 12564683 12564444 8.140000e-73 285.0
3 TraesCS3A01G225100 chr3A 88.333 240 25 3 4331 4567 703773220 703772981 8.140000e-73 285.0
4 TraesCS3A01G225100 chr3A 87.967 241 23 6 4331 4567 709929716 709929954 3.790000e-71 279.0
5 TraesCS3A01G225100 chr3A 86.381 257 29 5 4331 4583 648881492 648881238 4.900000e-70 276.0
6 TraesCS3A01G225100 chr3A 78.182 275 52 7 3551 3821 140805852 140805582 8.550000e-38 169.0
7 TraesCS3A01G225100 chr3B 91.869 3419 156 56 884 4253 410776739 410773394 0.000000e+00 4662.0
8 TraesCS3A01G225100 chr3B 79.869 765 137 16 2668 3422 183083336 183084093 1.220000e-150 544.0
9 TraesCS3A01G225100 chr3B 78.484 409 59 24 4582 4968 410747004 410746603 1.790000e-59 241.0
10 TraesCS3A01G225100 chr3B 78.824 255 50 4 3551 3803 183084175 183084427 8.550000e-38 169.0
11 TraesCS3A01G225100 chr3D 94.260 2648 82 28 898 3512 310681272 310683882 0.000000e+00 3984.0
12 TraesCS3A01G225100 chr3D 97.019 738 22 0 3516 4253 310683999 310684736 0.000000e+00 1242.0
13 TraesCS3A01G225100 chr3D 79.794 777 140 16 2668 3434 129025165 129025934 2.610000e-152 549.0
14 TraesCS3A01G225100 chr3D 79.328 774 146 11 2667 3433 6023136 6022370 9.470000e-147 531.0
15 TraesCS3A01G225100 chr3D 79.216 255 49 4 3551 3803 129026029 129026281 1.840000e-39 174.0
16 TraesCS3A01G225100 chr3D 94.505 91 4 1 4687 4776 310684783 310684873 6.710000e-29 139.0
17 TraesCS3A01G225100 chr5A 94.044 873 50 2 1 871 693387439 693388311 0.000000e+00 1323.0
18 TraesCS3A01G225100 chr5A 91.183 896 62 5 3 882 613548518 613549412 0.000000e+00 1201.0
19 TraesCS3A01G225100 chr5A 88.158 76 8 1 4242 4316 485531634 485531709 6.850000e-14 89.8
20 TraesCS3A01G225100 chr7A 92.784 873 60 3 1 871 456193752 456192881 0.000000e+00 1260.0
21 TraesCS3A01G225100 chr7A 88.750 240 23 4 4331 4567 713107862 713107624 1.750000e-74 291.0
22 TraesCS3A01G225100 chr1A 91.648 886 59 3 1 871 461751332 461752217 0.000000e+00 1212.0
23 TraesCS3A01G225100 chr1A 90.755 887 65 4 1 871 148616059 148616944 0.000000e+00 1168.0
24 TraesCS3A01G225100 chr1A 78.003 791 151 19 2655 3432 154700606 154701386 4.500000e-130 475.0
25 TraesCS3A01G225100 chr1A 87.045 247 27 5 4331 4573 321527453 321527698 1.760000e-69 274.0
26 TraesCS3A01G225100 chr1A 87.097 248 22 9 4342 4582 491146316 491146072 6.340000e-69 272.0
27 TraesCS3A01G225100 chr1A 94.521 146 8 0 1 146 586754358 586754213 5.000000e-55 226.0
28 TraesCS3A01G225100 chr4A 91.186 885 64 3 1 871 611989847 611988963 0.000000e+00 1190.0
29 TraesCS3A01G225100 chr4A 95.000 60 3 0 4252 4311 667844322 667844381 1.470000e-15 95.3
30 TraesCS3A01G225100 chr6A 90.868 887 65 4 1 871 605679079 605679965 0.000000e+00 1175.0
31 TraesCS3A01G225100 chr6A 90.406 886 70 3 1 871 605785089 605785974 0.000000e+00 1151.0
32 TraesCS3A01G225100 chr6A 90.899 868 62 5 1 853 13120581 13119716 0.000000e+00 1149.0
33 TraesCS3A01G225100 chr6A 90.909 869 60 7 1 853 13181282 13180417 0.000000e+00 1149.0
34 TraesCS3A01G225100 chr2D 93.166 717 47 2 157 871 610412954 610412238 0.000000e+00 1051.0
35 TraesCS3A01G225100 chr2D 74.074 783 158 39 2680 3437 506792298 506791536 3.790000e-71 279.0
36 TraesCS3A01G225100 chr5D 93.017 716 48 2 157 871 421088200 421087486 0.000000e+00 1044.0
37 TraesCS3A01G225100 chr5D 93.836 146 9 0 1 146 421088396 421088251 2.330000e-53 220.0
38 TraesCS3A01G225100 chr1B 88.649 740 84 0 2706 3445 622367012 622366273 0.000000e+00 902.0
39 TraesCS3A01G225100 chr1B 82.434 723 76 28 3545 4241 622365635 622364938 7.170000e-163 584.0
40 TraesCS3A01G225100 chr1B 79.268 738 133 14 2661 3388 670957314 670958041 9.600000e-137 497.0
41 TraesCS3A01G225100 chr1B 79.526 718 127 18 2670 3377 670917422 670918129 1.240000e-135 494.0
42 TraesCS3A01G225100 chr1B 90.000 70 5 1 4244 4311 14952497 14952566 6.850000e-14 89.8
43 TraesCS3A01G225100 chr1B 90.000 70 5 1 4244 4311 14994261 14994330 6.850000e-14 89.8
44 TraesCS3A01G225100 chr1D 79.424 729 130 15 2670 3388 482516763 482516045 9.600000e-137 497.0
45 TraesCS3A01G225100 chr1D 78.278 778 146 19 2658 3422 137968334 137967567 3.480000e-131 479.0
46 TraesCS3A01G225100 chrUn 79.178 730 136 11 2661 3382 1944829 1945550 4.470000e-135 492.0
47 TraesCS3A01G225100 chrUn 93.750 64 4 0 4248 4311 15683801 15683864 4.090000e-16 97.1
48 TraesCS3A01G225100 chrUn 93.750 64 4 0 4248 4311 15814742 15814805 4.090000e-16 97.1
49 TraesCS3A01G225100 chr2B 88.136 236 26 2 4331 4564 470471047 470470812 3.790000e-71 279.0
50 TraesCS3A01G225100 chr2B 73.563 783 162 39 2680 3437 594846530 594845768 1.770000e-64 257.0
51 TraesCS3A01G225100 chr2B 93.939 66 4 0 4246 4311 774874626 774874561 3.160000e-17 100.0
52 TraesCS3A01G225100 chr6D 87.243 243 28 3 4331 4570 337897808 337897566 1.760000e-69 274.0
53 TraesCS3A01G225100 chr2A 73.813 779 167 32 2680 3437 651609564 651608802 1.760000e-69 274.0
54 TraesCS3A01G225100 chr2A 93.836 146 9 0 1 146 1782156 1782301 2.330000e-53 220.0
55 TraesCS3A01G225100 chr6B 92.424 66 5 0 4246 4311 142677772 142677837 1.470000e-15 95.3
56 TraesCS3A01G225100 chr6B 91.045 67 5 1 4245 4311 133354043 133353978 6.850000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G225100 chr3A 421718543 421723510 4967 True 9175.000000 9175 100.000000 1 4968 1 chr3A.!!$R3 4967
1 TraesCS3A01G225100 chr3A 15075182 15075942 760 False 514.000000 514 79.064000 2661 3421 1 chr3A.!!$F1 760
2 TraesCS3A01G225100 chr3B 410773394 410776739 3345 True 4662.000000 4662 91.869000 884 4253 1 chr3B.!!$R2 3369
3 TraesCS3A01G225100 chr3B 183083336 183084427 1091 False 356.500000 544 79.346500 2668 3803 2 chr3B.!!$F1 1135
4 TraesCS3A01G225100 chr3D 310681272 310684873 3601 False 1788.333333 3984 95.261333 898 4776 3 chr3D.!!$F2 3878
5 TraesCS3A01G225100 chr3D 6022370 6023136 766 True 531.000000 531 79.328000 2667 3433 1 chr3D.!!$R1 766
6 TraesCS3A01G225100 chr3D 129025165 129026281 1116 False 361.500000 549 79.505000 2668 3803 2 chr3D.!!$F1 1135
7 TraesCS3A01G225100 chr5A 693387439 693388311 872 False 1323.000000 1323 94.044000 1 871 1 chr5A.!!$F3 870
8 TraesCS3A01G225100 chr5A 613548518 613549412 894 False 1201.000000 1201 91.183000 3 882 1 chr5A.!!$F2 879
9 TraesCS3A01G225100 chr7A 456192881 456193752 871 True 1260.000000 1260 92.784000 1 871 1 chr7A.!!$R1 870
10 TraesCS3A01G225100 chr1A 461751332 461752217 885 False 1212.000000 1212 91.648000 1 871 1 chr1A.!!$F4 870
11 TraesCS3A01G225100 chr1A 148616059 148616944 885 False 1168.000000 1168 90.755000 1 871 1 chr1A.!!$F1 870
12 TraesCS3A01G225100 chr1A 154700606 154701386 780 False 475.000000 475 78.003000 2655 3432 1 chr1A.!!$F2 777
13 TraesCS3A01G225100 chr4A 611988963 611989847 884 True 1190.000000 1190 91.186000 1 871 1 chr4A.!!$R1 870
14 TraesCS3A01G225100 chr6A 605679079 605679965 886 False 1175.000000 1175 90.868000 1 871 1 chr6A.!!$F1 870
15 TraesCS3A01G225100 chr6A 605785089 605785974 885 False 1151.000000 1151 90.406000 1 871 1 chr6A.!!$F2 870
16 TraesCS3A01G225100 chr6A 13119716 13120581 865 True 1149.000000 1149 90.899000 1 853 1 chr6A.!!$R1 852
17 TraesCS3A01G225100 chr6A 13180417 13181282 865 True 1149.000000 1149 90.909000 1 853 1 chr6A.!!$R2 852
18 TraesCS3A01G225100 chr2D 610412238 610412954 716 True 1051.000000 1051 93.166000 157 871 1 chr2D.!!$R2 714
19 TraesCS3A01G225100 chr2D 506791536 506792298 762 True 279.000000 279 74.074000 2680 3437 1 chr2D.!!$R1 757
20 TraesCS3A01G225100 chr5D 421087486 421088396 910 True 632.000000 1044 93.426500 1 871 2 chr5D.!!$R1 870
21 TraesCS3A01G225100 chr1B 622364938 622367012 2074 True 743.000000 902 85.541500 2706 4241 2 chr1B.!!$R1 1535
22 TraesCS3A01G225100 chr1B 670957314 670958041 727 False 497.000000 497 79.268000 2661 3388 1 chr1B.!!$F4 727
23 TraesCS3A01G225100 chr1B 670917422 670918129 707 False 494.000000 494 79.526000 2670 3377 1 chr1B.!!$F3 707
24 TraesCS3A01G225100 chr1D 482516045 482516763 718 True 497.000000 497 79.424000 2670 3388 1 chr1D.!!$R2 718
25 TraesCS3A01G225100 chr1D 137967567 137968334 767 True 479.000000 479 78.278000 2658 3422 1 chr1D.!!$R1 764
26 TraesCS3A01G225100 chrUn 1944829 1945550 721 False 492.000000 492 79.178000 2661 3382 1 chrUn.!!$F1 721
27 TraesCS3A01G225100 chr2B 594845768 594846530 762 True 257.000000 257 73.563000 2680 3437 1 chr2B.!!$R2 757
28 TraesCS3A01G225100 chr2A 651608802 651609564 762 True 274.000000 274 73.813000 2680 3437 1 chr2A.!!$R1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 124 0.613260 CTGCTAGGTAGTTGGCCACA 59.387 55.000 3.88 0.00 0.00 4.17 F
1070 1136 0.031515 TCTCCGGATTCTAAGGGCCA 60.032 55.000 3.57 0.00 0.00 5.36 F
1641 1730 0.031721 AGACCAGAACCGTTCACGAC 59.968 55.000 13.69 3.56 43.02 4.34 F
1681 1770 0.984995 AGCCCAGTCCAGGTAAGAAC 59.015 55.000 0.00 0.00 0.00 3.01 F
1862 1959 1.069204 ACTGGAGTGCTACTGTGTGTG 59.931 52.381 0.00 0.00 0.00 3.82 F
3676 4351 1.227853 GGAGGTGACCAACGTGCTT 60.228 57.895 3.63 0.00 32.76 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1479 1547 0.179097 CTCCAAAGCTAGCGACTCCC 60.179 60.000 9.55 0.0 0.00 4.30 R
2869 2984 0.462759 GCAGGTAGATGCAGGACACC 60.463 60.000 0.00 0.0 45.77 4.16 R
3484 3605 0.172578 TACAGAGGAACGACGCCATG 59.827 55.000 0.00 0.0 0.00 3.66 R
3510 3631 7.652524 ATCAGAATCGCTACAGATACCATAT 57.347 36.000 0.00 0.0 0.00 1.78 R
3902 4577 2.026301 CGAGGAATCGGAGTCGGC 59.974 66.667 0.00 0.0 36.95 5.54 R
4786 5504 0.035439 GGCAACGATTCCCCAGAGAA 60.035 55.000 0.00 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 124 0.613260 CTGCTAGGTAGTTGGCCACA 59.387 55.000 3.88 0.00 0.00 4.17
124 126 0.902531 GCTAGGTAGTTGGCCACAGA 59.097 55.000 3.88 0.00 0.00 3.41
146 148 6.684131 CAGACAATATACAAAGTTGCACATCG 59.316 38.462 0.00 0.00 0.00 3.84
317 362 5.023533 AGTATACGAAGTTGCACATCCAT 57.976 39.130 0.00 0.00 37.78 3.41
363 408 3.610040 AATAGTGAAGCACATCCACGA 57.390 42.857 0.00 0.00 36.74 4.35
466 511 5.240121 AGTTTTGCACCATCATTGAAATCC 58.760 37.500 0.00 0.00 0.00 3.01
478 523 6.018589 TCATTGAAATCCGCATGTTTACAA 57.981 33.333 0.00 0.00 0.00 2.41
548 593 1.473258 AGGCAGTTGCACAAAACAGA 58.527 45.000 6.43 0.00 44.36 3.41
664 711 1.344458 TAATTTCGACGCGCGGTTTA 58.656 45.000 35.22 17.49 41.33 2.01
850 903 2.930019 AGTGCTAGTGGGCAGCCA 60.930 61.111 15.19 0.00 43.25 4.75
875 928 4.137879 GCTAGACGCGTCCCTCTA 57.862 61.111 34.08 19.20 0.00 2.43
877 930 0.814812 GCTAGACGCGTCCCTCTACT 60.815 60.000 34.08 17.23 0.00 2.57
882 935 1.742268 GACGCGTCCCTCTACTTAACT 59.258 52.381 28.61 0.00 0.00 2.24
894 947 5.220970 CCTCTACTTAACTGTCTGCTAGCTC 60.221 48.000 17.23 7.19 0.00 4.09
923 981 4.661776 CGCAAACATGAATTATTCTCGTCG 59.338 41.667 0.00 0.00 0.00 5.12
952 1010 7.065803 AGTCAAAAACCTTATCGTATCCATGTG 59.934 37.037 0.00 0.00 0.00 3.21
953 1011 7.065324 GTCAAAAACCTTATCGTATCCATGTGA 59.935 37.037 0.00 0.00 0.00 3.58
1033 1091 1.056660 AGTTTCCACACGGGTCTCAT 58.943 50.000 0.00 0.00 38.11 2.90
1035 1093 0.036164 TTTCCACACGGGTCTCATGG 59.964 55.000 0.00 0.00 38.11 3.66
1036 1094 2.436646 CCACACGGGTCTCATGGC 60.437 66.667 0.00 0.00 0.00 4.40
1037 1095 2.436646 CACACGGGTCTCATGGCC 60.437 66.667 0.00 0.00 0.00 5.36
1038 1096 2.927856 ACACGGGTCTCATGGCCA 60.928 61.111 8.56 8.56 0.00 5.36
1056 1122 2.266055 GGCCAGACCACTTCTCCG 59.734 66.667 0.00 0.00 38.86 4.63
1070 1136 0.031515 TCTCCGGATTCTAAGGGCCA 60.032 55.000 3.57 0.00 0.00 5.36
1150 1216 0.456221 ACATGCGTACCTTCCTCTCG 59.544 55.000 0.00 0.00 0.00 4.04
1176 1242 0.386731 CCGGCAAGCAAAAAGGTACG 60.387 55.000 0.00 0.00 0.00 3.67
1203 1269 0.376152 CTGTCTTGATGCATGCCGTC 59.624 55.000 16.68 13.90 0.00 4.79
1212 1278 3.388134 CATGCCGTCGTGCTGTAG 58.612 61.111 7.14 0.00 0.00 2.74
1213 1279 1.446099 CATGCCGTCGTGCTGTAGT 60.446 57.895 7.14 0.00 0.00 2.73
1214 1280 0.179148 CATGCCGTCGTGCTGTAGTA 60.179 55.000 7.14 0.00 0.00 1.82
1257 1323 3.214250 ATCTTCTCGATCGGGCCGC 62.214 63.158 23.83 7.36 0.00 6.53
1509 1578 1.536073 GCTTTGGAGCTTTCCCACCC 61.536 60.000 0.00 0.00 45.65 4.61
1593 1682 0.531974 GAGGGCGCACGGAAATATCA 60.532 55.000 10.83 0.00 0.00 2.15
1594 1683 0.107410 AGGGCGCACGGAAATATCAA 60.107 50.000 10.83 0.00 0.00 2.57
1595 1684 0.736053 GGGCGCACGGAAATATCAAA 59.264 50.000 10.83 0.00 0.00 2.69
1596 1685 1.533129 GGGCGCACGGAAATATCAAAC 60.533 52.381 10.83 0.00 0.00 2.93
1606 1695 4.446385 CGGAAATATCAAACGATCCGCTTA 59.554 41.667 0.00 0.00 42.64 3.09
1641 1730 0.031721 AGACCAGAACCGTTCACGAC 59.968 55.000 13.69 3.56 43.02 4.34
1644 1733 1.002250 CCAGAACCGTTCACGACTCG 61.002 60.000 13.69 0.00 43.02 4.18
1681 1770 0.984995 AGCCCAGTCCAGGTAAGAAC 59.015 55.000 0.00 0.00 0.00 3.01
1791 1880 7.441836 TGGTATTGCGATACTTGATTATGTCT 58.558 34.615 21.00 0.00 38.53 3.41
1802 1891 7.138692 ACTTGATTATGTCTTTCTGCTTCAC 57.861 36.000 0.00 0.00 0.00 3.18
1810 1899 9.587772 TTATGTCTTTCTGCTTCACTATTACTC 57.412 33.333 0.00 0.00 0.00 2.59
1862 1959 1.069204 ACTGGAGTGCTACTGTGTGTG 59.931 52.381 0.00 0.00 0.00 3.82
1899 1997 1.954382 TCTCGATCGGTATGGAGTTGG 59.046 52.381 16.41 0.00 38.65 3.77
1927 2025 1.818674 AGACGTCCAAATCCAAATGGC 59.181 47.619 13.01 0.00 36.62 4.40
2062 2160 1.294659 GCCCTGAACGAGCAGAACAG 61.295 60.000 10.13 0.00 38.14 3.16
2110 2208 3.001406 GGCGACCCCACCACTAGT 61.001 66.667 0.00 0.00 0.00 2.57
2282 2380 3.150949 CAGGTGGAGGTGCAGTCA 58.849 61.111 0.00 0.00 0.00 3.41
2330 2428 2.839632 TCGCAGCCGATCCTCCAT 60.840 61.111 0.00 0.00 38.82 3.41
2352 2450 2.186903 CCCAGATCAACGACGGGG 59.813 66.667 0.00 0.00 35.48 5.73
2382 2480 4.961511 AAGGCACGCGCGACAAGA 62.962 61.111 39.36 0.00 39.92 3.02
2607 2707 3.681897 GTCTGACATGACCATGAACTGTC 59.318 47.826 16.07 5.55 41.20 3.51
2608 2708 3.324556 TCTGACATGACCATGAACTGTCA 59.675 43.478 16.07 15.04 44.86 3.58
2609 2709 3.667360 TGACATGACCATGAACTGTCAG 58.333 45.455 16.07 0.00 44.07 3.51
2610 2710 3.071457 TGACATGACCATGAACTGTCAGT 59.929 43.478 16.07 0.00 44.07 3.41
2612 2712 3.071457 ACATGACCATGAACTGTCAGTGA 59.929 43.478 16.07 0.00 44.07 3.41
2613 2713 3.111853 TGACCATGAACTGTCAGTGAC 57.888 47.619 16.68 16.68 36.62 3.67
2614 2714 2.700371 TGACCATGAACTGTCAGTGACT 59.300 45.455 23.29 3.92 36.62 3.41
2615 2715 3.895041 TGACCATGAACTGTCAGTGACTA 59.105 43.478 23.29 9.59 36.62 2.59
2616 2716 4.021981 TGACCATGAACTGTCAGTGACTAG 60.022 45.833 23.29 19.34 36.62 2.57
2618 2718 4.021894 ACCATGAACTGTCAGTGACTAGTC 60.022 45.833 23.29 16.32 37.14 2.59
2619 2719 3.898517 TGAACTGTCAGTGACTAGTCG 57.101 47.619 23.29 4.24 33.15 4.18
2621 2721 3.250280 TGAACTGTCAGTGACTAGTCGAC 59.750 47.826 23.29 17.71 33.15 4.20
2624 2724 2.814919 CTGTCAGTGACTAGTCGACCTT 59.185 50.000 23.29 0.00 33.15 3.50
2625 2725 2.812591 TGTCAGTGACTAGTCGACCTTC 59.187 50.000 23.29 6.82 33.15 3.46
2626 2726 2.812591 GTCAGTGACTAGTCGACCTTCA 59.187 50.000 17.85 9.54 0.00 3.02
2627 2727 2.812591 TCAGTGACTAGTCGACCTTCAC 59.187 50.000 24.14 24.14 37.45 3.18
2628 2728 2.095161 CAGTGACTAGTCGACCTTCACC 60.095 54.545 26.25 15.22 37.84 4.02
2629 2729 2.161030 GTGACTAGTCGACCTTCACCT 58.839 52.381 22.32 3.98 32.12 4.00
2630 2730 3.008813 AGTGACTAGTCGACCTTCACCTA 59.991 47.826 26.25 7.86 37.84 3.08
3097 3218 4.489771 GGCCAGTGGATGTCCGGG 62.490 72.222 15.20 0.00 39.43 5.73
3331 3452 4.430765 TTCCTCTTCGTCGCCGCC 62.431 66.667 0.00 0.00 0.00 6.13
3400 3521 4.643387 GGCGCCCGGATTGCCTAT 62.643 66.667 18.11 0.00 45.40 2.57
3484 3605 2.702261 TGTGCCCACGTAATAAACCTC 58.298 47.619 0.00 0.00 0.00 3.85
3510 3631 4.201950 GGCGTCGTTCCTCTGTATTTAGTA 60.202 45.833 0.00 0.00 0.00 1.82
3676 4351 1.227853 GGAGGTGACCAACGTGCTT 60.228 57.895 3.63 0.00 32.76 3.91
3902 4577 2.027625 GTCTCCAAGTCGCCCAACG 61.028 63.158 0.00 0.00 45.62 4.10
3944 4634 1.818785 GAGACCGATCCGTCCGTCT 60.819 63.158 10.14 2.84 42.88 4.18
4161 4871 2.364324 GGTATAATGTGAGGCACGGAGA 59.636 50.000 0.00 0.00 37.14 3.71
4245 4957 3.069443 GGACCTTGCAGAATTGGTTGAAA 59.931 43.478 0.00 0.00 32.30 2.69
4248 4960 4.202151 ACCTTGCAGAATTGGTTGAAAGAC 60.202 41.667 4.29 0.00 32.64 3.01
4249 4961 4.038402 CCTTGCAGAATTGGTTGAAAGACT 59.962 41.667 4.29 0.00 32.64 3.24
4250 4962 4.836125 TGCAGAATTGGTTGAAAGACTC 57.164 40.909 0.00 0.00 0.00 3.36
4251 4963 4.206375 TGCAGAATTGGTTGAAAGACTCA 58.794 39.130 0.00 0.00 0.00 3.41
4252 4964 4.276678 TGCAGAATTGGTTGAAAGACTCAG 59.723 41.667 0.00 0.00 34.81 3.35
4253 4965 4.516698 GCAGAATTGGTTGAAAGACTCAGA 59.483 41.667 0.00 0.00 34.81 3.27
4254 4966 5.334724 GCAGAATTGGTTGAAAGACTCAGAG 60.335 44.000 0.00 0.00 34.81 3.35
4255 4967 5.180868 CAGAATTGGTTGAAAGACTCAGAGG 59.819 44.000 1.53 0.00 34.81 3.69
4256 4968 3.492102 TTGGTTGAAAGACTCAGAGGG 57.508 47.619 1.53 0.00 34.81 4.30
4257 4969 2.408565 TGGTTGAAAGACTCAGAGGGT 58.591 47.619 1.53 0.00 34.81 4.34
4258 4970 2.104792 TGGTTGAAAGACTCAGAGGGTG 59.895 50.000 1.53 0.00 34.81 4.61
4259 4971 2.104963 GGTTGAAAGACTCAGAGGGTGT 59.895 50.000 1.53 0.00 34.81 4.16
4260 4972 3.433740 GGTTGAAAGACTCAGAGGGTGTT 60.434 47.826 1.53 0.00 34.81 3.32
4261 4973 4.200092 GTTGAAAGACTCAGAGGGTGTTT 58.800 43.478 1.53 0.00 34.81 2.83
4262 4974 5.365619 GTTGAAAGACTCAGAGGGTGTTTA 58.634 41.667 1.53 0.00 34.81 2.01
4263 4975 5.825593 TGAAAGACTCAGAGGGTGTTTAT 57.174 39.130 1.53 0.00 31.83 1.40
4264 4976 6.187727 TGAAAGACTCAGAGGGTGTTTATT 57.812 37.500 1.53 0.00 31.83 1.40
4265 4977 6.601332 TGAAAGACTCAGAGGGTGTTTATTT 58.399 36.000 1.53 0.00 31.83 1.40
4266 4978 7.060421 TGAAAGACTCAGAGGGTGTTTATTTT 58.940 34.615 1.53 0.00 31.83 1.82
4267 4979 7.228706 TGAAAGACTCAGAGGGTGTTTATTTTC 59.771 37.037 1.53 0.21 31.83 2.29
4268 4980 5.238583 AGACTCAGAGGGTGTTTATTTTCG 58.761 41.667 1.53 0.00 0.00 3.46
4269 4981 4.324267 ACTCAGAGGGTGTTTATTTTCGG 58.676 43.478 1.53 0.00 0.00 4.30
4270 4982 3.681593 TCAGAGGGTGTTTATTTTCGGG 58.318 45.455 0.00 0.00 0.00 5.14
4271 4983 2.752903 CAGAGGGTGTTTATTTTCGGGG 59.247 50.000 0.00 0.00 0.00 5.73
4272 4984 2.645797 AGAGGGTGTTTATTTTCGGGGA 59.354 45.455 0.00 0.00 0.00 4.81
4273 4985 2.751259 GAGGGTGTTTATTTTCGGGGAC 59.249 50.000 0.00 0.00 0.00 4.46
4274 4986 2.377531 AGGGTGTTTATTTTCGGGGACT 59.622 45.455 0.00 0.00 0.00 3.85
4275 4987 3.159472 GGGTGTTTATTTTCGGGGACTT 58.841 45.455 0.00 0.00 0.00 3.01
4276 4988 4.043184 AGGGTGTTTATTTTCGGGGACTTA 59.957 41.667 0.00 0.00 0.00 2.24
4277 4989 4.951715 GGGTGTTTATTTTCGGGGACTTAT 59.048 41.667 0.00 0.00 0.00 1.73
4278 4990 5.419788 GGGTGTTTATTTTCGGGGACTTATT 59.580 40.000 0.00 0.00 0.00 1.40
4279 4991 6.327154 GGTGTTTATTTTCGGGGACTTATTG 58.673 40.000 0.00 0.00 0.00 1.90
4280 4992 6.151480 GGTGTTTATTTTCGGGGACTTATTGA 59.849 38.462 0.00 0.00 0.00 2.57
4281 4993 7.025365 GTGTTTATTTTCGGGGACTTATTGAC 58.975 38.462 0.00 0.00 0.00 3.18
4282 4994 6.943718 TGTTTATTTTCGGGGACTTATTGACT 59.056 34.615 0.00 0.00 0.00 3.41
4283 4995 7.449086 TGTTTATTTTCGGGGACTTATTGACTT 59.551 33.333 0.00 0.00 0.00 3.01
4284 4996 8.949177 GTTTATTTTCGGGGACTTATTGACTTA 58.051 33.333 0.00 0.00 0.00 2.24
4285 4997 8.726870 TTATTTTCGGGGACTTATTGACTTAG 57.273 34.615 0.00 0.00 0.00 2.18
4286 4998 4.748277 TTCGGGGACTTATTGACTTAGG 57.252 45.455 0.00 0.00 0.00 2.69
4287 4999 3.036091 TCGGGGACTTATTGACTTAGGG 58.964 50.000 0.00 0.00 0.00 3.53
4288 5000 3.036091 CGGGGACTTATTGACTTAGGGA 58.964 50.000 0.00 0.00 0.00 4.20
4289 5001 3.181468 CGGGGACTTATTGACTTAGGGAC 60.181 52.174 0.00 0.00 0.00 4.46
4290 5002 4.038633 GGGGACTTATTGACTTAGGGACT 58.961 47.826 0.00 0.00 46.37 3.85
4291 5003 4.473922 GGGGACTTATTGACTTAGGGACTT 59.526 45.833 0.00 0.00 41.75 3.01
4292 5004 5.664457 GGGGACTTATTGACTTAGGGACTTA 59.336 44.000 0.00 0.00 41.75 2.24
4293 5005 6.157471 GGGGACTTATTGACTTAGGGACTTAA 59.843 42.308 0.00 0.00 41.75 1.85
4294 5006 7.311486 GGGGACTTATTGACTTAGGGACTTAAA 60.311 40.741 0.00 0.00 41.75 1.52
4295 5007 8.105197 GGGACTTATTGACTTAGGGACTTAAAA 58.895 37.037 0.00 0.00 41.75 1.52
4296 5008 9.511272 GGACTTATTGACTTAGGGACTTAAAAA 57.489 33.333 0.00 0.00 41.75 1.94
4339 5051 1.324383 TTTTGCGGGGAAAAGTCTCC 58.676 50.000 0.00 0.00 41.67 3.71
4346 5058 2.969990 GGGGAAAAGTCTCCGTAAGTC 58.030 52.381 0.00 0.00 33.59 3.01
4347 5059 2.566279 GGGGAAAAGTCTCCGTAAGTCT 59.434 50.000 0.00 0.00 33.59 3.24
4348 5060 3.007723 GGGGAAAAGTCTCCGTAAGTCTT 59.992 47.826 0.00 0.00 33.59 3.01
4349 5061 4.221482 GGGGAAAAGTCTCCGTAAGTCTTA 59.779 45.833 0.00 0.00 33.59 2.10
4350 5062 5.105023 GGGGAAAAGTCTCCGTAAGTCTTAT 60.105 44.000 0.00 0.00 33.59 1.73
4351 5063 6.041511 GGGAAAAGTCTCCGTAAGTCTTATC 58.958 44.000 0.00 0.00 36.21 1.75
4352 5064 6.127394 GGGAAAAGTCTCCGTAAGTCTTATCT 60.127 42.308 0.00 0.00 36.21 1.98
4353 5065 7.067981 GGGAAAAGTCTCCGTAAGTCTTATCTA 59.932 40.741 0.00 0.00 36.21 1.98
4354 5066 8.465201 GGAAAAGTCTCCGTAAGTCTTATCTAA 58.535 37.037 0.00 0.00 33.03 2.10
4355 5067 9.852091 GAAAAGTCTCCGTAAGTCTTATCTAAA 57.148 33.333 0.00 0.00 33.03 1.85
4356 5068 9.636879 AAAAGTCTCCGTAAGTCTTATCTAAAC 57.363 33.333 0.00 0.00 33.03 2.01
4357 5069 7.332213 AGTCTCCGTAAGTCTTATCTAAACC 57.668 40.000 0.00 0.00 0.00 3.27
4358 5070 6.888632 AGTCTCCGTAAGTCTTATCTAAACCA 59.111 38.462 0.00 0.00 0.00 3.67
4359 5071 7.395489 AGTCTCCGTAAGTCTTATCTAAACCAA 59.605 37.037 0.00 0.00 0.00 3.67
4360 5072 8.031277 GTCTCCGTAAGTCTTATCTAAACCAAA 58.969 37.037 0.00 0.00 0.00 3.28
4361 5073 8.031277 TCTCCGTAAGTCTTATCTAAACCAAAC 58.969 37.037 0.00 0.00 0.00 2.93
4362 5074 7.669427 TCCGTAAGTCTTATCTAAACCAAACA 58.331 34.615 0.00 0.00 0.00 2.83
4363 5075 7.816031 TCCGTAAGTCTTATCTAAACCAAACAG 59.184 37.037 0.00 0.00 0.00 3.16
4364 5076 7.816031 CCGTAAGTCTTATCTAAACCAAACAGA 59.184 37.037 0.00 0.00 0.00 3.41
4365 5077 9.199982 CGTAAGTCTTATCTAAACCAAACAGAA 57.800 33.333 0.00 0.00 0.00 3.02
4367 5079 8.622948 AAGTCTTATCTAAACCAAACAGAAGG 57.377 34.615 0.00 0.00 0.00 3.46
4368 5080 7.168905 AGTCTTATCTAAACCAAACAGAAGGG 58.831 38.462 0.00 0.00 0.00 3.95
4369 5081 7.017254 AGTCTTATCTAAACCAAACAGAAGGGA 59.983 37.037 0.00 0.00 0.00 4.20
4370 5082 7.119407 GTCTTATCTAAACCAAACAGAAGGGAC 59.881 40.741 0.00 0.00 0.00 4.46
4389 5101 7.663043 AGGGACTTATAGAGACTTAAAGTGG 57.337 40.000 0.00 0.00 27.25 4.00
4390 5102 6.612049 AGGGACTTATAGAGACTTAAAGTGGG 59.388 42.308 0.00 0.00 27.25 4.61
4391 5103 6.282167 GGACTTATAGAGACTTAAAGTGGGC 58.718 44.000 0.00 0.00 30.83 5.36
4392 5104 6.127140 GGACTTATAGAGACTTAAAGTGGGCA 60.127 42.308 0.00 0.00 30.83 5.36
4393 5105 7.419172 GGACTTATAGAGACTTAAAGTGGGCAT 60.419 40.741 0.00 0.00 30.83 4.40
4394 5106 7.862675 ACTTATAGAGACTTAAAGTGGGCATT 58.137 34.615 0.00 0.00 0.00 3.56
4395 5107 8.329502 ACTTATAGAGACTTAAAGTGGGCATTT 58.670 33.333 0.00 0.00 0.00 2.32
4396 5108 8.506168 TTATAGAGACTTAAAGTGGGCATTTG 57.494 34.615 0.00 0.00 0.00 2.32
4397 5109 4.985538 AGAGACTTAAAGTGGGCATTTGA 58.014 39.130 0.00 0.00 0.00 2.69
4398 5110 5.006386 AGAGACTTAAAGTGGGCATTTGAG 58.994 41.667 0.00 0.00 31.53 3.02
4399 5111 4.985538 AGACTTAAAGTGGGCATTTGAGA 58.014 39.130 7.52 0.00 30.26 3.27
4400 5112 4.762251 AGACTTAAAGTGGGCATTTGAGAC 59.238 41.667 7.52 3.04 30.26 3.36
4401 5113 4.729868 ACTTAAAGTGGGCATTTGAGACT 58.270 39.130 7.52 0.00 30.26 3.24
4402 5114 5.140454 ACTTAAAGTGGGCATTTGAGACTT 58.860 37.500 7.52 0.00 30.26 3.01
4403 5115 6.303839 ACTTAAAGTGGGCATTTGAGACTTA 58.696 36.000 7.52 0.00 30.26 2.24
4404 5116 6.948309 ACTTAAAGTGGGCATTTGAGACTTAT 59.052 34.615 7.52 0.00 30.26 1.73
4405 5117 5.649782 AAAGTGGGCATTTGAGACTTATG 57.350 39.130 0.00 0.00 0.00 1.90
4406 5118 4.574674 AGTGGGCATTTGAGACTTATGA 57.425 40.909 0.00 0.00 0.00 2.15
4407 5119 4.922206 AGTGGGCATTTGAGACTTATGAA 58.078 39.130 0.00 0.00 0.00 2.57
4408 5120 5.324409 AGTGGGCATTTGAGACTTATGAAA 58.676 37.500 0.00 0.00 0.00 2.69
4409 5121 5.954150 AGTGGGCATTTGAGACTTATGAAAT 59.046 36.000 0.00 0.00 0.00 2.17
4410 5122 7.118723 AGTGGGCATTTGAGACTTATGAAATA 58.881 34.615 0.00 0.00 0.00 1.40
4411 5123 7.615365 AGTGGGCATTTGAGACTTATGAAATAA 59.385 33.333 0.00 0.00 36.20 1.40
4427 5139 6.935240 TGAAATAAGACTCTCAAGGAAGGA 57.065 37.500 0.00 0.00 0.00 3.36
4428 5140 6.702329 TGAAATAAGACTCTCAAGGAAGGAC 58.298 40.000 0.00 0.00 0.00 3.85
4429 5141 6.498651 TGAAATAAGACTCTCAAGGAAGGACT 59.501 38.462 0.00 0.00 0.00 3.85
4430 5142 6.943899 AATAAGACTCTCAAGGAAGGACTT 57.056 37.500 0.00 0.00 0.00 3.01
4431 5143 8.437274 AAATAAGACTCTCAAGGAAGGACTTA 57.563 34.615 0.00 0.00 0.00 2.24
4432 5144 8.616799 AATAAGACTCTCAAGGAAGGACTTAT 57.383 34.615 0.00 0.00 32.06 1.73
4433 5145 9.716556 AATAAGACTCTCAAGGAAGGACTTATA 57.283 33.333 0.00 0.00 31.05 0.98
4434 5146 9.716556 ATAAGACTCTCAAGGAAGGACTTATAA 57.283 33.333 0.00 0.00 0.00 0.98
4435 5147 7.654022 AGACTCTCAAGGAAGGACTTATAAG 57.346 40.000 11.05 11.05 0.00 1.73
4436 5148 7.415086 AGACTCTCAAGGAAGGACTTATAAGA 58.585 38.462 19.38 0.00 0.00 2.10
4437 5149 7.896496 AGACTCTCAAGGAAGGACTTATAAGAA 59.104 37.037 19.38 0.00 0.00 2.52
4438 5150 7.842982 ACTCTCAAGGAAGGACTTATAAGAAC 58.157 38.462 19.38 10.64 0.00 3.01
4439 5151 6.864342 TCTCAAGGAAGGACTTATAAGAACG 58.136 40.000 19.38 0.00 0.00 3.95
4440 5152 6.436532 TCTCAAGGAAGGACTTATAAGAACGT 59.563 38.462 19.38 9.02 0.00 3.99
4441 5153 7.613022 TCTCAAGGAAGGACTTATAAGAACGTA 59.387 37.037 19.38 0.00 0.00 3.57
4442 5154 8.302515 TCAAGGAAGGACTTATAAGAACGTAT 57.697 34.615 19.38 0.00 0.00 3.06
4443 5155 9.412460 TCAAGGAAGGACTTATAAGAACGTATA 57.588 33.333 19.38 0.00 0.00 1.47
4444 5156 9.680315 CAAGGAAGGACTTATAAGAACGTATAG 57.320 37.037 19.38 0.00 0.00 1.31
4445 5157 8.993404 AGGAAGGACTTATAAGAACGTATAGT 57.007 34.615 19.38 0.00 0.00 2.12
4447 5159 9.460906 GGAAGGACTTATAAGAACGTATAGTTG 57.539 37.037 19.38 0.00 44.35 3.16
4497 5209 8.855804 AGTCTTAGAAACCAAATAGATAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
4498 5210 8.706521 AGTCTTAGAAACCAAATAGATAGGGAC 58.293 37.037 0.00 0.00 0.00 4.46
4499 5211 8.706521 GTCTTAGAAACCAAATAGATAGGGACT 58.293 37.037 0.00 0.00 46.37 3.85
4500 5212 9.280456 TCTTAGAAACCAAATAGATAGGGACTT 57.720 33.333 0.00 0.00 41.75 3.01
4501 5213 9.907229 CTTAGAAACCAAATAGATAGGGACTTT 57.093 33.333 0.00 0.00 41.75 2.66
4563 5275 8.265165 GTCCTAAGACTTATAAACCAAACAGG 57.735 38.462 0.00 0.00 40.95 4.00
4564 5276 6.882678 TCCTAAGACTTATAAACCAAACAGGC 59.117 38.462 0.00 0.00 43.14 4.85
4565 5277 5.977489 AAGACTTATAAACCAAACAGGCC 57.023 39.130 0.00 0.00 43.14 5.19
4570 5282 3.525800 ATAAACCAAACAGGCCTCAGT 57.474 42.857 0.00 0.00 43.14 3.41
4577 5289 4.018415 ACCAAACAGGCCTCAGTATACAAT 60.018 41.667 0.00 0.00 43.14 2.71
4581 5293 7.936847 CCAAACAGGCCTCAGTATACAATATTA 59.063 37.037 0.00 0.00 0.00 0.98
4582 5294 9.507329 CAAACAGGCCTCAGTATACAATATTAT 57.493 33.333 0.00 0.00 0.00 1.28
4583 5295 9.726438 AAACAGGCCTCAGTATACAATATTATC 57.274 33.333 0.00 0.00 0.00 1.75
4584 5296 8.671987 ACAGGCCTCAGTATACAATATTATCT 57.328 34.615 0.00 0.00 0.00 1.98
4617 5335 5.323371 GCTGGAGCAGGACTAATCTATAG 57.677 47.826 0.00 0.00 41.59 1.31
4618 5336 4.159506 GCTGGAGCAGGACTAATCTATAGG 59.840 50.000 0.00 0.00 41.59 2.57
4619 5337 5.329399 CTGGAGCAGGACTAATCTATAGGT 58.671 45.833 0.00 0.00 0.00 3.08
4620 5338 5.326069 TGGAGCAGGACTAATCTATAGGTC 58.674 45.833 0.00 0.00 0.00 3.85
4621 5339 4.396790 GGAGCAGGACTAATCTATAGGTCG 59.603 50.000 0.00 0.00 0.00 4.79
4622 5340 3.759618 AGCAGGACTAATCTATAGGTCGC 59.240 47.826 0.00 0.29 0.00 5.19
4623 5341 3.759618 GCAGGACTAATCTATAGGTCGCT 59.240 47.826 0.00 0.00 0.00 4.93
4624 5342 4.380023 GCAGGACTAATCTATAGGTCGCTG 60.380 50.000 0.00 9.43 33.94 5.18
4625 5343 4.156922 CAGGACTAATCTATAGGTCGCTGG 59.843 50.000 0.00 0.00 0.00 4.85
4626 5344 3.444388 GGACTAATCTATAGGTCGCTGGG 59.556 52.174 0.00 0.00 0.00 4.45
4627 5345 4.080687 GACTAATCTATAGGTCGCTGGGT 58.919 47.826 0.00 0.00 0.00 4.51
4628 5346 5.251764 GACTAATCTATAGGTCGCTGGGTA 58.748 45.833 0.00 0.00 0.00 3.69
4629 5347 5.254901 ACTAATCTATAGGTCGCTGGGTAG 58.745 45.833 0.00 0.00 0.00 3.18
4630 5348 1.906990 TCTATAGGTCGCTGGGTAGC 58.093 55.000 0.00 0.00 46.62 3.58
4640 5358 1.235724 GCTGGGTAGCGAAACAAAGT 58.764 50.000 0.00 0.00 40.67 2.66
4641 5359 2.419667 GCTGGGTAGCGAAACAAAGTA 58.580 47.619 0.00 0.00 40.67 2.24
4642 5360 3.007635 GCTGGGTAGCGAAACAAAGTAT 58.992 45.455 0.00 0.00 40.67 2.12
4643 5361 3.063588 GCTGGGTAGCGAAACAAAGTATC 59.936 47.826 0.00 0.00 40.67 2.24
4644 5362 3.602483 TGGGTAGCGAAACAAAGTATCC 58.398 45.455 0.00 0.00 0.00 2.59
4645 5363 3.008157 TGGGTAGCGAAACAAAGTATCCA 59.992 43.478 0.00 0.00 0.00 3.41
4646 5364 4.004982 GGGTAGCGAAACAAAGTATCCAA 58.995 43.478 0.00 0.00 0.00 3.53
4647 5365 4.142752 GGGTAGCGAAACAAAGTATCCAAC 60.143 45.833 0.00 0.00 0.00 3.77
4648 5366 4.142752 GGTAGCGAAACAAAGTATCCAACC 60.143 45.833 0.00 0.00 0.00 3.77
4649 5367 2.482721 AGCGAAACAAAGTATCCAACCG 59.517 45.455 0.00 0.00 0.00 4.44
4650 5368 2.846693 CGAAACAAAGTATCCAACCGC 58.153 47.619 0.00 0.00 0.00 5.68
4651 5369 2.723618 CGAAACAAAGTATCCAACCGCG 60.724 50.000 0.00 0.00 0.00 6.46
4652 5370 0.519961 AACAAAGTATCCAACCGCGC 59.480 50.000 0.00 0.00 0.00 6.86
4653 5371 0.604243 ACAAAGTATCCAACCGCGCA 60.604 50.000 8.75 0.00 0.00 6.09
4654 5372 0.732571 CAAAGTATCCAACCGCGCAT 59.267 50.000 8.75 0.00 0.00 4.73
4655 5373 1.937223 CAAAGTATCCAACCGCGCATA 59.063 47.619 8.75 0.00 0.00 3.14
4656 5374 2.543777 AAGTATCCAACCGCGCATAT 57.456 45.000 8.75 0.00 0.00 1.78
4657 5375 2.543777 AGTATCCAACCGCGCATATT 57.456 45.000 8.75 0.00 0.00 1.28
4658 5376 2.143122 AGTATCCAACCGCGCATATTG 58.857 47.619 8.75 8.29 0.00 1.90
4659 5377 1.871039 GTATCCAACCGCGCATATTGT 59.129 47.619 8.75 0.00 0.00 2.71
4660 5378 1.388547 ATCCAACCGCGCATATTGTT 58.611 45.000 8.75 0.00 0.00 2.83
4661 5379 0.730265 TCCAACCGCGCATATTGTTC 59.270 50.000 8.75 0.00 0.00 3.18
4662 5380 0.449786 CCAACCGCGCATATTGTTCA 59.550 50.000 8.75 0.00 0.00 3.18
4663 5381 1.065401 CCAACCGCGCATATTGTTCAT 59.935 47.619 8.75 0.00 0.00 2.57
4664 5382 2.110990 CAACCGCGCATATTGTTCATG 58.889 47.619 8.75 0.00 0.00 3.07
4665 5383 1.378531 ACCGCGCATATTGTTCATGT 58.621 45.000 8.75 0.00 0.00 3.21
4666 5384 2.556257 ACCGCGCATATTGTTCATGTA 58.444 42.857 8.75 0.00 0.00 2.29
4667 5385 2.939756 ACCGCGCATATTGTTCATGTAA 59.060 40.909 8.75 0.00 0.00 2.41
4668 5386 3.563808 ACCGCGCATATTGTTCATGTAAT 59.436 39.130 8.75 0.00 0.00 1.89
4669 5387 4.752604 ACCGCGCATATTGTTCATGTAATA 59.247 37.500 8.75 0.00 0.00 0.98
4670 5388 5.411361 ACCGCGCATATTGTTCATGTAATAT 59.589 36.000 8.75 0.32 31.46 1.28
4671 5389 6.592220 ACCGCGCATATTGTTCATGTAATATA 59.408 34.615 8.75 0.16 30.50 0.86
4672 5390 7.118535 ACCGCGCATATTGTTCATGTAATATAA 59.881 33.333 8.75 0.00 30.50 0.98
4673 5391 7.635973 CCGCGCATATTGTTCATGTAATATAAG 59.364 37.037 8.75 9.04 30.50 1.73
4674 5392 7.162546 CGCGCATATTGTTCATGTAATATAAGC 59.837 37.037 8.75 16.80 32.99 3.09
4675 5393 7.429340 GCGCATATTGTTCATGTAATATAAGCC 59.571 37.037 0.30 8.87 31.72 4.35
4676 5394 8.668353 CGCATATTGTTCATGTAATATAAGCCT 58.332 33.333 10.20 0.00 30.50 4.58
4677 5395 9.778993 GCATATTGTTCATGTAATATAAGCCTG 57.221 33.333 10.20 3.83 30.50 4.85
4680 5398 7.496529 TTGTTCATGTAATATAAGCCTGAGC 57.503 36.000 0.00 0.00 40.32 4.26
4681 5399 5.997746 TGTTCATGTAATATAAGCCTGAGCC 59.002 40.000 0.00 0.00 41.25 4.70
4682 5400 6.183361 TGTTCATGTAATATAAGCCTGAGCCT 60.183 38.462 0.00 0.00 41.25 4.58
4683 5401 6.439636 TCATGTAATATAAGCCTGAGCCTT 57.560 37.500 0.00 0.00 41.25 4.35
4684 5402 6.233434 TCATGTAATATAAGCCTGAGCCTTG 58.767 40.000 0.00 0.00 41.25 3.61
4685 5403 4.973168 TGTAATATAAGCCTGAGCCTTGG 58.027 43.478 0.00 0.00 41.25 3.61
4686 5404 4.658435 TGTAATATAAGCCTGAGCCTTGGA 59.342 41.667 0.00 0.00 41.25 3.53
4687 5405 5.310594 TGTAATATAAGCCTGAGCCTTGGAT 59.689 40.000 0.00 0.00 41.25 3.41
4688 5406 2.947127 ATAAGCCTGAGCCTTGGATC 57.053 50.000 0.00 0.00 41.25 3.36
4689 5407 1.583556 TAAGCCTGAGCCTTGGATCA 58.416 50.000 7.42 7.42 41.25 2.92
4707 5425 2.846193 TCAGTAACAACACCCTGCTTC 58.154 47.619 0.00 0.00 0.00 3.86
4723 5441 1.801178 GCTTCTCGGTTTCTGGTTCAG 59.199 52.381 0.00 0.00 0.00 3.02
4776 5494 3.196254 GGACAGGATGCCATTTTTGACAT 59.804 43.478 0.00 0.00 42.53 3.06
4777 5495 4.427312 GACAGGATGCCATTTTTGACATC 58.573 43.478 0.00 0.00 42.53 3.06
4778 5496 3.833650 ACAGGATGCCATTTTTGACATCA 59.166 39.130 4.96 0.00 42.53 3.07
4779 5497 4.081862 ACAGGATGCCATTTTTGACATCAG 60.082 41.667 4.96 0.43 42.53 2.90
4780 5498 4.081862 CAGGATGCCATTTTTGACATCAGT 60.082 41.667 4.96 0.00 40.53 3.41
4781 5499 5.125900 CAGGATGCCATTTTTGACATCAGTA 59.874 40.000 4.96 0.00 40.53 2.74
4782 5500 5.895534 AGGATGCCATTTTTGACATCAGTAT 59.104 36.000 4.96 0.00 40.53 2.12
4783 5501 5.981315 GGATGCCATTTTTGACATCAGTATG 59.019 40.000 4.96 0.00 40.53 2.39
4785 5503 7.201812 GGATGCCATTTTTGACATCAGTATGTA 60.202 37.037 4.96 0.00 46.49 2.29
4786 5504 7.643569 TGCCATTTTTGACATCAGTATGTAT 57.356 32.000 0.00 0.00 46.49 2.29
4787 5505 8.065473 TGCCATTTTTGACATCAGTATGTATT 57.935 30.769 0.00 0.00 46.49 1.89
4788 5506 8.190122 TGCCATTTTTGACATCAGTATGTATTC 58.810 33.333 0.00 0.00 46.49 1.75
4789 5507 8.408601 GCCATTTTTGACATCAGTATGTATTCT 58.591 33.333 0.00 0.00 46.49 2.40
4790 5508 9.941664 CCATTTTTGACATCAGTATGTATTCTC 57.058 33.333 0.00 0.00 46.49 2.87
4793 5511 8.722480 TTTTGACATCAGTATGTATTCTCTGG 57.278 34.615 0.00 0.00 46.49 3.86
4794 5512 6.410942 TGACATCAGTATGTATTCTCTGGG 57.589 41.667 0.00 0.00 46.49 4.45
4795 5513 5.305386 TGACATCAGTATGTATTCTCTGGGG 59.695 44.000 0.00 0.00 46.49 4.96
4796 5514 5.467738 ACATCAGTATGTATTCTCTGGGGA 58.532 41.667 0.00 0.00 44.66 4.81
4797 5515 5.905331 ACATCAGTATGTATTCTCTGGGGAA 59.095 40.000 0.00 0.00 44.66 3.97
4798 5516 6.560304 ACATCAGTATGTATTCTCTGGGGAAT 59.440 38.462 1.21 1.21 44.66 3.01
4799 5517 6.672266 TCAGTATGTATTCTCTGGGGAATC 57.328 41.667 0.00 0.00 37.40 2.52
4800 5518 5.243954 TCAGTATGTATTCTCTGGGGAATCG 59.756 44.000 0.00 0.00 37.40 3.34
4801 5519 5.011125 CAGTATGTATTCTCTGGGGAATCGT 59.989 44.000 0.00 0.00 37.20 3.73
4802 5520 5.602978 AGTATGTATTCTCTGGGGAATCGTT 59.397 40.000 0.00 0.00 37.20 3.85
4803 5521 4.137116 TGTATTCTCTGGGGAATCGTTG 57.863 45.455 0.00 0.00 37.20 4.10
4804 5522 2.044123 ATTCTCTGGGGAATCGTTGC 57.956 50.000 0.00 0.00 31.08 4.17
4805 5523 0.035439 TTCTCTGGGGAATCGTTGCC 60.035 55.000 0.73 0.73 40.98 4.52
4806 5524 1.815421 CTCTGGGGAATCGTTGCCG 60.815 63.158 3.10 0.00 42.93 5.69
4817 5535 2.613026 TCGTTGCCGATATCAATGGT 57.387 45.000 3.12 0.00 38.40 3.55
4818 5536 2.479837 TCGTTGCCGATATCAATGGTC 58.520 47.619 3.12 0.00 38.40 4.02
4819 5537 2.102420 TCGTTGCCGATATCAATGGTCT 59.898 45.455 3.12 0.00 38.40 3.85
4820 5538 2.872245 CGTTGCCGATATCAATGGTCTT 59.128 45.455 3.12 0.00 35.63 3.01
4821 5539 3.312421 CGTTGCCGATATCAATGGTCTTT 59.688 43.478 3.12 0.00 35.63 2.52
4822 5540 4.201910 CGTTGCCGATATCAATGGTCTTTT 60.202 41.667 3.12 0.00 35.63 2.27
4823 5541 5.650543 GTTGCCGATATCAATGGTCTTTTT 58.349 37.500 3.12 0.00 0.00 1.94
4848 5566 8.746922 TTTTTCTGATCTGTAAATGACAATGC 57.253 30.769 5.46 0.00 37.70 3.56
4849 5567 7.692460 TTTCTGATCTGTAAATGACAATGCT 57.308 32.000 0.00 0.00 37.70 3.79
4850 5568 8.791327 TTTCTGATCTGTAAATGACAATGCTA 57.209 30.769 0.00 0.00 37.70 3.49
4851 5569 8.969260 TTCTGATCTGTAAATGACAATGCTAT 57.031 30.769 0.00 0.00 37.70 2.97
4852 5570 8.374327 TCTGATCTGTAAATGACAATGCTATG 57.626 34.615 0.00 0.00 37.70 2.23
4853 5571 8.206189 TCTGATCTGTAAATGACAATGCTATGA 58.794 33.333 0.00 0.00 37.70 2.15
4854 5572 8.735692 TGATCTGTAAATGACAATGCTATGAA 57.264 30.769 0.00 0.00 37.70 2.57
4855 5573 8.833493 TGATCTGTAAATGACAATGCTATGAAG 58.167 33.333 0.00 0.00 37.70 3.02
4856 5574 8.969260 ATCTGTAAATGACAATGCTATGAAGA 57.031 30.769 0.00 0.00 37.70 2.87
4857 5575 8.429493 TCTGTAAATGACAATGCTATGAAGAG 57.571 34.615 0.00 0.00 37.70 2.85
4858 5576 7.011763 TCTGTAAATGACAATGCTATGAAGAGC 59.988 37.037 0.00 0.00 39.28 4.09
4859 5577 6.598850 TGTAAATGACAATGCTATGAAGAGCA 59.401 34.615 1.57 1.57 44.46 4.26
4860 5578 7.414429 TGTAAATGACAATGCTATGAAGAGCAC 60.414 37.037 1.02 0.00 43.71 4.40
4866 5584 2.659731 GCTATGAAGAGCACGCATTC 57.340 50.000 0.00 0.00 42.36 2.67
4867 5585 2.208431 GCTATGAAGAGCACGCATTCT 58.792 47.619 8.04 0.00 42.36 2.40
4868 5586 2.611292 GCTATGAAGAGCACGCATTCTT 59.389 45.455 8.04 1.87 42.36 2.52
4869 5587 3.064545 GCTATGAAGAGCACGCATTCTTT 59.935 43.478 8.04 0.95 42.36 2.52
4870 5588 3.754188 ATGAAGAGCACGCATTCTTTC 57.246 42.857 8.04 0.00 33.97 2.62
4871 5589 2.771089 TGAAGAGCACGCATTCTTTCT 58.229 42.857 8.04 0.00 33.97 2.52
4872 5590 3.141398 TGAAGAGCACGCATTCTTTCTT 58.859 40.909 8.04 0.01 33.97 2.52
4873 5591 3.565482 TGAAGAGCACGCATTCTTTCTTT 59.435 39.130 8.04 0.00 33.97 2.52
4874 5592 3.820777 AGAGCACGCATTCTTTCTTTC 57.179 42.857 0.00 0.00 0.00 2.62
4875 5593 3.406764 AGAGCACGCATTCTTTCTTTCT 58.593 40.909 0.00 0.00 0.00 2.52
4876 5594 3.817647 AGAGCACGCATTCTTTCTTTCTT 59.182 39.130 0.00 0.00 0.00 2.52
4877 5595 3.893720 AGCACGCATTCTTTCTTTCTTG 58.106 40.909 0.00 0.00 0.00 3.02
4878 5596 3.316308 AGCACGCATTCTTTCTTTCTTGT 59.684 39.130 0.00 0.00 0.00 3.16
4879 5597 4.044426 GCACGCATTCTTTCTTTCTTGTT 58.956 39.130 0.00 0.00 0.00 2.83
4880 5598 4.085415 GCACGCATTCTTTCTTTCTTGTTG 60.085 41.667 0.00 0.00 0.00 3.33
4881 5599 5.273170 CACGCATTCTTTCTTTCTTGTTGA 58.727 37.500 0.00 0.00 0.00 3.18
4882 5600 5.743398 CACGCATTCTTTCTTTCTTGTTGAA 59.257 36.000 0.00 0.00 0.00 2.69
4883 5601 6.418819 CACGCATTCTTTCTTTCTTGTTGAAT 59.581 34.615 0.00 0.00 34.24 2.57
4884 5602 6.418819 ACGCATTCTTTCTTTCTTGTTGAATG 59.581 34.615 0.00 0.00 40.95 2.67
4885 5603 6.638063 CGCATTCTTTCTTTCTTGTTGAATGA 59.362 34.615 14.43 0.00 40.67 2.57
4886 5604 7.167968 CGCATTCTTTCTTTCTTGTTGAATGAA 59.832 33.333 14.43 0.00 42.94 2.57
4887 5605 8.819974 GCATTCTTTCTTTCTTGTTGAATGAAA 58.180 29.630 14.43 14.33 46.84 2.69
4891 5609 7.524294 TTTCTTTCTTGTTGAATGAAAGCAC 57.476 32.000 12.32 0.00 45.53 4.40
4892 5610 6.206395 TCTTTCTTGTTGAATGAAAGCACA 57.794 33.333 9.11 0.00 43.51 4.57
4893 5611 6.629128 TCTTTCTTGTTGAATGAAAGCACAA 58.371 32.000 9.11 0.00 43.51 3.33
4894 5612 6.753279 TCTTTCTTGTTGAATGAAAGCACAAG 59.247 34.615 9.11 4.32 43.51 3.16
4895 5613 4.362279 TCTTGTTGAATGAAAGCACAAGC 58.638 39.130 5.63 0.00 42.56 4.01
4896 5614 6.849694 TTTCTTGTTGAATGAAAGCACAAGCT 60.850 34.615 5.63 0.00 43.36 3.74
4909 5627 4.708726 GCACAAGCTTTGTCTTATCCAT 57.291 40.909 0.00 0.00 43.23 3.41
4910 5628 5.064441 GCACAAGCTTTGTCTTATCCATT 57.936 39.130 0.00 0.00 43.23 3.16
4911 5629 6.194796 GCACAAGCTTTGTCTTATCCATTA 57.805 37.500 0.00 0.00 43.23 1.90
4912 5630 6.620678 GCACAAGCTTTGTCTTATCCATTAA 58.379 36.000 0.00 0.00 43.23 1.40
4913 5631 7.260603 GCACAAGCTTTGTCTTATCCATTAAT 58.739 34.615 0.00 0.00 43.23 1.40
4914 5632 7.761249 GCACAAGCTTTGTCTTATCCATTAATT 59.239 33.333 0.00 0.00 43.23 1.40
4919 5637 9.920946 AGCTTTGTCTTATCCATTAATTAAGGA 57.079 29.630 11.32 13.35 35.59 3.36
4931 5649 9.784531 TCCATTAATTAAGGAGAATAGAGCTTG 57.215 33.333 11.32 0.00 0.00 4.01
4932 5650 9.566432 CCATTAATTAAGGAGAATAGAGCTTGT 57.434 33.333 11.32 0.00 0.00 3.16
4935 5653 9.601217 TTAATTAAGGAGAATAGAGCTTGTCAC 57.399 33.333 0.00 0.00 0.00 3.67
4936 5654 6.605471 TTAAGGAGAATAGAGCTTGTCACA 57.395 37.500 0.00 0.00 0.00 3.58
4937 5655 4.734398 AGGAGAATAGAGCTTGTCACAG 57.266 45.455 0.00 0.00 0.00 3.66
4938 5656 4.348486 AGGAGAATAGAGCTTGTCACAGA 58.652 43.478 0.00 0.00 0.00 3.41
4939 5657 4.774726 AGGAGAATAGAGCTTGTCACAGAA 59.225 41.667 0.00 0.00 0.00 3.02
4940 5658 4.867608 GGAGAATAGAGCTTGTCACAGAAC 59.132 45.833 0.00 0.00 0.00 3.01
4941 5659 4.489810 AGAATAGAGCTTGTCACAGAACG 58.510 43.478 0.00 0.00 0.00 3.95
4942 5660 2.065993 TAGAGCTTGTCACAGAACGC 57.934 50.000 0.00 0.00 0.00 4.84
4943 5661 0.390860 AGAGCTTGTCACAGAACGCT 59.609 50.000 0.00 0.00 0.00 5.07
4944 5662 0.787183 GAGCTTGTCACAGAACGCTC 59.213 55.000 5.18 5.18 37.35 5.03
4945 5663 0.104855 AGCTTGTCACAGAACGCTCA 59.895 50.000 0.00 0.00 0.00 4.26
4946 5664 1.151668 GCTTGTCACAGAACGCTCAT 58.848 50.000 0.00 0.00 0.00 2.90
4947 5665 2.029020 AGCTTGTCACAGAACGCTCATA 60.029 45.455 0.00 0.00 0.00 2.15
4948 5666 2.932614 GCTTGTCACAGAACGCTCATAT 59.067 45.455 0.00 0.00 0.00 1.78
4949 5667 3.372206 GCTTGTCACAGAACGCTCATATT 59.628 43.478 0.00 0.00 0.00 1.28
4950 5668 4.726021 GCTTGTCACAGAACGCTCATATTG 60.726 45.833 0.00 0.00 0.00 1.90
4951 5669 2.672874 TGTCACAGAACGCTCATATTGC 59.327 45.455 0.00 0.00 0.00 3.56
4952 5670 2.932614 GTCACAGAACGCTCATATTGCT 59.067 45.455 0.00 0.00 0.00 3.91
4953 5671 2.931969 TCACAGAACGCTCATATTGCTG 59.068 45.455 0.00 0.00 0.00 4.41
4954 5672 1.667724 ACAGAACGCTCATATTGCTGC 59.332 47.619 0.00 0.00 0.00 5.25
4955 5673 1.667212 CAGAACGCTCATATTGCTGCA 59.333 47.619 0.00 0.00 0.00 4.41
4956 5674 1.667724 AGAACGCTCATATTGCTGCAC 59.332 47.619 0.00 0.00 0.00 4.57
4957 5675 1.398041 GAACGCTCATATTGCTGCACA 59.602 47.619 0.00 0.00 0.00 4.57
4958 5676 0.729116 ACGCTCATATTGCTGCACAC 59.271 50.000 0.00 0.00 0.00 3.82
4959 5677 0.728542 CGCTCATATTGCTGCACACA 59.271 50.000 0.00 0.00 0.00 3.72
4960 5678 1.332686 CGCTCATATTGCTGCACACAT 59.667 47.619 0.00 0.00 0.00 3.21
4961 5679 2.223409 CGCTCATATTGCTGCACACATT 60.223 45.455 0.00 0.00 0.00 2.71
4962 5680 3.369385 GCTCATATTGCTGCACACATTC 58.631 45.455 0.00 0.00 0.00 2.67
4963 5681 3.066342 GCTCATATTGCTGCACACATTCT 59.934 43.478 0.00 0.00 0.00 2.40
4964 5682 4.439700 GCTCATATTGCTGCACACATTCTT 60.440 41.667 0.00 0.00 0.00 2.52
4965 5683 5.239359 TCATATTGCTGCACACATTCTTC 57.761 39.130 0.00 0.00 0.00 2.87
4966 5684 4.945543 TCATATTGCTGCACACATTCTTCT 59.054 37.500 0.00 0.00 0.00 2.85
4967 5685 5.416639 TCATATTGCTGCACACATTCTTCTT 59.583 36.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 5.815581 AGGGAGTTGCACATTGACTAATAA 58.184 37.500 0.00 0.00 0.00 1.40
122 124 6.183360 CCGATGTGCAACTTTGTATATTGTCT 60.183 38.462 0.00 0.00 38.04 3.41
124 126 5.414454 ACCGATGTGCAACTTTGTATATTGT 59.586 36.000 0.00 0.00 38.04 2.71
317 362 1.883275 CATCGGCCAACAACCTAACAA 59.117 47.619 2.24 0.00 0.00 2.83
363 408 5.596836 TTGATCTGCAACTTTTTCCTGTT 57.403 34.783 0.00 0.00 0.00 3.16
466 511 8.612619 ACTTTTCTCCTATATTGTAAACATGCG 58.387 33.333 0.00 0.00 0.00 4.73
478 523 6.064717 GGGATGTGCAACTTTTCTCCTATAT 58.935 40.000 0.00 0.00 38.04 0.86
585 632 5.201243 TCTTCGAAACTAGATCCCTCATGA 58.799 41.667 0.00 0.00 0.00 3.07
590 637 3.131400 GTGCTCTTCGAAACTAGATCCCT 59.869 47.826 0.00 0.00 0.00 4.20
750 802 8.325787 AGTAAATAGGTGTGGACATATGTGAAA 58.674 33.333 14.43 0.00 29.55 2.69
795 848 7.333423 GGCTGAAAAAGGTAAGTTTTTGTCTTT 59.667 33.333 0.00 0.00 39.25 2.52
796 849 6.816640 GGCTGAAAAAGGTAAGTTTTTGTCTT 59.183 34.615 0.00 0.00 39.25 3.01
871 924 5.588648 AGAGCTAGCAGACAGTTAAGTAGAG 59.411 44.000 18.83 0.00 0.00 2.43
875 928 5.502079 TCTAGAGCTAGCAGACAGTTAAGT 58.498 41.667 18.83 0.00 33.32 2.24
877 930 5.237561 CGATCTAGAGCTAGCAGACAGTTAA 59.762 44.000 18.83 0.00 33.32 2.01
882 935 1.876799 GCGATCTAGAGCTAGCAGACA 59.123 52.381 18.83 0.00 33.32 3.41
894 947 7.948895 CGAGAATAATTCATGTTTGCGATCTAG 59.051 37.037 0.00 0.00 0.00 2.43
923 981 6.128117 TGGATACGATAAGGTTTTTGACTTGC 60.128 38.462 0.00 0.00 42.51 4.01
952 1010 2.033747 CGGACACGATGCAACATGTATC 60.034 50.000 0.00 0.00 44.60 2.24
953 1011 1.933181 CGGACACGATGCAACATGTAT 59.067 47.619 0.00 0.00 44.60 2.29
1035 1093 2.360475 GAAGTGGTCTGGCCTGGC 60.360 66.667 11.05 11.05 38.35 4.85
1036 1094 1.298014 GAGAAGTGGTCTGGCCTGG 59.702 63.158 10.07 0.00 36.41 4.45
1037 1095 1.298014 GGAGAAGTGGTCTGGCCTG 59.702 63.158 3.32 2.92 36.41 4.85
1038 1096 2.286523 CGGAGAAGTGGTCTGGCCT 61.287 63.158 3.32 0.00 36.41 5.19
1070 1136 1.683385 GGAGTGCTGCTTCAAAAAGGT 59.317 47.619 0.00 0.00 32.79 3.50
1080 1146 2.033757 CAAGCCAGGAGTGCTGCT 59.966 61.111 6.05 4.51 39.48 4.24
1081 1147 3.060615 CCAAGCCAGGAGTGCTGC 61.061 66.667 6.05 2.09 39.48 5.25
1082 1148 1.673665 GTCCAAGCCAGGAGTGCTG 60.674 63.158 4.35 4.35 39.48 4.41
1176 1242 1.814394 TGCATCAAGACAGTGGAATGC 59.186 47.619 0.00 3.10 0.00 3.56
1203 1269 5.065602 TGTTCTATGGTAGTACTACAGCACG 59.934 44.000 29.38 15.63 37.78 5.34
1212 1278 5.828747 TGCGATCTTGTTCTATGGTAGTAC 58.171 41.667 0.00 0.00 0.00 2.73
1213 1279 6.459670 TTGCGATCTTGTTCTATGGTAGTA 57.540 37.500 0.00 0.00 0.00 1.82
1214 1280 5.339008 TTGCGATCTTGTTCTATGGTAGT 57.661 39.130 0.00 0.00 0.00 2.73
1257 1323 0.250209 CTCCTCCTCCGCAATCCATG 60.250 60.000 0.00 0.00 0.00 3.66
1479 1547 0.179097 CTCCAAAGCTAGCGACTCCC 60.179 60.000 9.55 0.00 0.00 4.30
1509 1578 4.445699 CTAGCTTAGCTTGGCCCG 57.554 61.111 13.44 0.00 40.44 6.13
1593 1682 2.936498 CAACAGGATAAGCGGATCGTTT 59.064 45.455 0.00 0.00 34.32 3.60
1594 1683 2.167693 TCAACAGGATAAGCGGATCGTT 59.832 45.455 0.00 0.00 0.00 3.85
1595 1684 1.754803 TCAACAGGATAAGCGGATCGT 59.245 47.619 0.00 0.00 0.00 3.73
1596 1685 2.509052 TCAACAGGATAAGCGGATCG 57.491 50.000 0.00 0.00 0.00 3.69
1606 1695 3.713764 CTGGTCTCCCTAATCAACAGGAT 59.286 47.826 0.00 0.00 38.05 3.24
1641 1730 3.232213 AGTACTATGTGTTGGTGCGAG 57.768 47.619 0.00 0.00 0.00 5.03
1644 1733 3.195661 GGCTAGTACTATGTGTTGGTGC 58.804 50.000 2.33 0.00 0.00 5.01
1681 1770 7.337184 TCGATCCTAAATCCTAGTGCTAGTATG 59.663 40.741 5.62 0.00 0.00 2.39
1791 1880 8.079211 ACATAGGAGTAATAGTGAAGCAGAAA 57.921 34.615 0.00 0.00 0.00 2.52
1802 1891 5.233988 GCTGCTGGAACATAGGAGTAATAG 58.766 45.833 0.00 0.00 38.20 1.73
1808 1897 1.156645 GCGCTGCTGGAACATAGGAG 61.157 60.000 0.00 0.00 38.20 3.69
1810 1899 1.153289 AGCGCTGCTGGAACATAGG 60.153 57.895 10.39 0.00 37.57 2.57
1850 1947 4.033358 GCAGAATCATACACACACAGTAGC 59.967 45.833 0.00 0.00 0.00 3.58
1862 1959 4.433615 TCGAGAAACCTGCAGAATCATAC 58.566 43.478 17.39 5.49 0.00 2.39
1899 1997 2.607038 GGATTTGGACGTCTTTGTTGCC 60.607 50.000 16.46 5.21 0.00 4.52
1961 2059 3.781770 GATGAGCAGCGACGGGAGG 62.782 68.421 0.00 0.00 0.00 4.30
2056 2154 1.486310 TGACAGTGTCCTTGCTGTTCT 59.514 47.619 20.43 0.00 44.89 3.01
2062 2160 2.426522 TGCTAATGACAGTGTCCTTGC 58.573 47.619 20.43 19.59 0.00 4.01
2330 2428 1.080093 GTCGTTGATCTGGGACGCA 60.080 57.895 0.00 0.00 36.77 5.24
2382 2480 1.067071 GGTCTTGAACGGATCGAACCT 60.067 52.381 10.28 0.00 0.00 3.50
2513 2611 4.078516 AAGTAGCGGTCGGTGCCC 62.079 66.667 5.28 0.00 0.00 5.36
2575 2673 2.412089 GTCATGTCAGACCGTTGCTAAC 59.588 50.000 0.00 0.00 32.36 2.34
2576 2674 2.683968 GTCATGTCAGACCGTTGCTAA 58.316 47.619 0.00 0.00 32.36 3.09
2577 2675 2.363788 GTCATGTCAGACCGTTGCTA 57.636 50.000 0.00 0.00 32.36 3.49
2607 2707 2.095161 GGTGAAGGTCGACTAGTCACTG 60.095 54.545 28.79 6.80 38.87 3.66
2608 2708 2.161030 GGTGAAGGTCGACTAGTCACT 58.839 52.381 28.79 13.67 38.87 3.41
2609 2709 2.161030 AGGTGAAGGTCGACTAGTCAC 58.839 52.381 25.42 25.42 38.28 3.67
2610 2710 2.581216 AGGTGAAGGTCGACTAGTCA 57.419 50.000 22.37 13.11 0.00 3.41
2624 2724 1.276989 CCAACCGTTAGCCTTAGGTGA 59.723 52.381 0.00 0.00 37.03 4.02
2625 2725 1.677820 CCCAACCGTTAGCCTTAGGTG 60.678 57.143 0.00 0.00 37.03 4.00
2626 2726 0.616891 CCCAACCGTTAGCCTTAGGT 59.383 55.000 0.00 0.00 38.88 3.08
2627 2727 0.616891 ACCCAACCGTTAGCCTTAGG 59.383 55.000 0.00 0.00 0.00 2.69
2628 2728 1.553704 AGACCCAACCGTTAGCCTTAG 59.446 52.381 0.00 0.00 0.00 2.18
2629 2729 1.648116 AGACCCAACCGTTAGCCTTA 58.352 50.000 0.00 0.00 0.00 2.69
2630 2730 0.769247 AAGACCCAACCGTTAGCCTT 59.231 50.000 0.00 0.00 0.00 4.35
2802 2917 2.280797 GGCTCACGTGCAGGAACA 60.281 61.111 14.38 0.00 34.04 3.18
2869 2984 0.462759 GCAGGTAGATGCAGGACACC 60.463 60.000 0.00 0.00 45.77 4.16
3400 3521 2.479566 AGAGGAAGAGCGCAATGAAA 57.520 45.000 11.47 0.00 0.00 2.69
3484 3605 0.172578 TACAGAGGAACGACGCCATG 59.827 55.000 0.00 0.00 0.00 3.66
3510 3631 7.652524 ATCAGAATCGCTACAGATACCATAT 57.347 36.000 0.00 0.00 0.00 1.78
3902 4577 2.026301 CGAGGAATCGGAGTCGGC 59.974 66.667 0.00 0.00 36.95 5.54
4161 4871 5.004448 AGACGTATACACAGATGGATCGAT 58.996 41.667 0.00 0.00 29.54 3.59
4245 4957 5.238583 CGAAAATAAACACCCTCTGAGTCT 58.761 41.667 3.66 0.00 0.00 3.24
4248 4960 3.689649 CCCGAAAATAAACACCCTCTGAG 59.310 47.826 0.00 0.00 0.00 3.35
4249 4961 3.560453 CCCCGAAAATAAACACCCTCTGA 60.560 47.826 0.00 0.00 0.00 3.27
4250 4962 2.752903 CCCCGAAAATAAACACCCTCTG 59.247 50.000 0.00 0.00 0.00 3.35
4251 4963 2.645797 TCCCCGAAAATAAACACCCTCT 59.354 45.455 0.00 0.00 0.00 3.69
4252 4964 2.751259 GTCCCCGAAAATAAACACCCTC 59.249 50.000 0.00 0.00 0.00 4.30
4253 4965 2.377531 AGTCCCCGAAAATAAACACCCT 59.622 45.455 0.00 0.00 0.00 4.34
4254 4966 2.799017 AGTCCCCGAAAATAAACACCC 58.201 47.619 0.00 0.00 0.00 4.61
4255 4967 6.151480 TCAATAAGTCCCCGAAAATAAACACC 59.849 38.462 0.00 0.00 0.00 4.16
4256 4968 7.025365 GTCAATAAGTCCCCGAAAATAAACAC 58.975 38.462 0.00 0.00 0.00 3.32
4257 4969 6.943718 AGTCAATAAGTCCCCGAAAATAAACA 59.056 34.615 0.00 0.00 0.00 2.83
4258 4970 7.387119 AGTCAATAAGTCCCCGAAAATAAAC 57.613 36.000 0.00 0.00 0.00 2.01
4259 4971 9.169592 CTAAGTCAATAAGTCCCCGAAAATAAA 57.830 33.333 0.00 0.00 0.00 1.40
4260 4972 7.771826 CCTAAGTCAATAAGTCCCCGAAAATAA 59.228 37.037 0.00 0.00 0.00 1.40
4261 4973 7.277396 CCTAAGTCAATAAGTCCCCGAAAATA 58.723 38.462 0.00 0.00 0.00 1.40
4262 4974 6.120220 CCTAAGTCAATAAGTCCCCGAAAAT 58.880 40.000 0.00 0.00 0.00 1.82
4263 4975 5.493809 CCTAAGTCAATAAGTCCCCGAAAA 58.506 41.667 0.00 0.00 0.00 2.29
4264 4976 4.080751 CCCTAAGTCAATAAGTCCCCGAAA 60.081 45.833 0.00 0.00 0.00 3.46
4265 4977 3.453353 CCCTAAGTCAATAAGTCCCCGAA 59.547 47.826 0.00 0.00 0.00 4.30
4266 4978 3.036091 CCCTAAGTCAATAAGTCCCCGA 58.964 50.000 0.00 0.00 0.00 5.14
4267 4979 3.036091 TCCCTAAGTCAATAAGTCCCCG 58.964 50.000 0.00 0.00 0.00 5.73
4268 4980 4.038633 AGTCCCTAAGTCAATAAGTCCCC 58.961 47.826 0.00 0.00 0.00 4.81
4269 4981 5.695424 AAGTCCCTAAGTCAATAAGTCCC 57.305 43.478 0.00 0.00 0.00 4.46
4270 4982 9.511272 TTTTTAAGTCCCTAAGTCAATAAGTCC 57.489 33.333 0.00 0.00 0.00 3.85
4319 5031 1.684450 GGAGACTTTTCCCCGCAAAAA 59.316 47.619 0.00 0.00 0.00 1.94
4320 5032 1.324383 GGAGACTTTTCCCCGCAAAA 58.676 50.000 0.00 0.00 0.00 2.44
4321 5033 0.887387 CGGAGACTTTTCCCCGCAAA 60.887 55.000 0.00 0.00 35.29 3.68
4322 5034 1.302192 CGGAGACTTTTCCCCGCAA 60.302 57.895 0.00 0.00 35.29 4.85
4323 5035 1.186917 TACGGAGACTTTTCCCCGCA 61.187 55.000 0.00 0.00 45.29 5.69
4324 5036 0.037046 TTACGGAGACTTTTCCCCGC 60.037 55.000 0.00 0.00 45.29 6.13
4325 5037 1.274447 ACTTACGGAGACTTTTCCCCG 59.726 52.381 0.00 0.00 46.65 5.73
4326 5038 2.566279 AGACTTACGGAGACTTTTCCCC 59.434 50.000 0.00 0.00 33.46 4.81
4327 5039 3.957591 AGACTTACGGAGACTTTTCCC 57.042 47.619 0.00 0.00 33.46 3.97
4328 5040 6.865411 AGATAAGACTTACGGAGACTTTTCC 58.135 40.000 9.98 0.00 40.18 3.13
4329 5041 9.852091 TTTAGATAAGACTTACGGAGACTTTTC 57.148 33.333 9.98 11.07 40.18 2.29
4330 5042 9.636879 GTTTAGATAAGACTTACGGAGACTTTT 57.363 33.333 9.98 4.33 40.18 2.27
4331 5043 8.249638 GGTTTAGATAAGACTTACGGAGACTTT 58.750 37.037 9.98 1.63 40.18 2.66
4332 5044 7.395489 TGGTTTAGATAAGACTTACGGAGACTT 59.605 37.037 0.00 9.72 41.92 3.01
4333 5045 6.888632 TGGTTTAGATAAGACTTACGGAGACT 59.111 38.462 0.00 0.00 31.55 3.24
4334 5046 7.093322 TGGTTTAGATAAGACTTACGGAGAC 57.907 40.000 0.00 0.00 0.00 3.36
4335 5047 7.707624 TTGGTTTAGATAAGACTTACGGAGA 57.292 36.000 0.00 0.00 0.00 3.71
4336 5048 7.816031 TGTTTGGTTTAGATAAGACTTACGGAG 59.184 37.037 0.00 0.00 0.00 4.63
4337 5049 7.669427 TGTTTGGTTTAGATAAGACTTACGGA 58.331 34.615 0.00 0.00 0.00 4.69
4338 5050 7.816031 TCTGTTTGGTTTAGATAAGACTTACGG 59.184 37.037 0.00 0.00 0.00 4.02
4339 5051 8.752766 TCTGTTTGGTTTAGATAAGACTTACG 57.247 34.615 0.00 0.00 0.00 3.18
4341 5053 9.720769 CCTTCTGTTTGGTTTAGATAAGACTTA 57.279 33.333 0.00 0.00 0.00 2.24
4342 5054 7.665974 CCCTTCTGTTTGGTTTAGATAAGACTT 59.334 37.037 0.00 0.00 0.00 3.01
4343 5055 7.017254 TCCCTTCTGTTTGGTTTAGATAAGACT 59.983 37.037 0.00 0.00 0.00 3.24
4344 5056 7.119407 GTCCCTTCTGTTTGGTTTAGATAAGAC 59.881 40.741 0.00 0.00 0.00 3.01
4345 5057 7.017254 AGTCCCTTCTGTTTGGTTTAGATAAGA 59.983 37.037 0.00 0.00 0.00 2.10
4346 5058 7.168905 AGTCCCTTCTGTTTGGTTTAGATAAG 58.831 38.462 0.00 0.00 0.00 1.73
4347 5059 7.086685 AGTCCCTTCTGTTTGGTTTAGATAA 57.913 36.000 0.00 0.00 0.00 1.75
4348 5060 6.697641 AGTCCCTTCTGTTTGGTTTAGATA 57.302 37.500 0.00 0.00 0.00 1.98
4349 5061 5.584551 AGTCCCTTCTGTTTGGTTTAGAT 57.415 39.130 0.00 0.00 0.00 1.98
4350 5062 5.382664 AAGTCCCTTCTGTTTGGTTTAGA 57.617 39.130 0.00 0.00 0.00 2.10
4351 5063 8.319146 TCTATAAGTCCCTTCTGTTTGGTTTAG 58.681 37.037 0.00 0.00 0.00 1.85
4352 5064 8.209802 TCTATAAGTCCCTTCTGTTTGGTTTA 57.790 34.615 0.00 0.00 0.00 2.01
4353 5065 7.017254 TCTCTATAAGTCCCTTCTGTTTGGTTT 59.983 37.037 0.00 0.00 0.00 3.27
4354 5066 6.500751 TCTCTATAAGTCCCTTCTGTTTGGTT 59.499 38.462 0.00 0.00 0.00 3.67
4355 5067 6.023603 TCTCTATAAGTCCCTTCTGTTTGGT 58.976 40.000 0.00 0.00 0.00 3.67
4356 5068 6.155393 AGTCTCTATAAGTCCCTTCTGTTTGG 59.845 42.308 0.00 0.00 0.00 3.28
4357 5069 7.176589 AGTCTCTATAAGTCCCTTCTGTTTG 57.823 40.000 0.00 0.00 0.00 2.93
4358 5070 7.800300 AAGTCTCTATAAGTCCCTTCTGTTT 57.200 36.000 0.00 0.00 0.00 2.83
4359 5071 8.896722 TTAAGTCTCTATAAGTCCCTTCTGTT 57.103 34.615 0.00 0.00 0.00 3.16
4360 5072 8.896722 TTTAAGTCTCTATAAGTCCCTTCTGT 57.103 34.615 0.00 0.00 0.00 3.41
4361 5073 8.973182 ACTTTAAGTCTCTATAAGTCCCTTCTG 58.027 37.037 0.00 0.00 0.00 3.02
4362 5074 8.973182 CACTTTAAGTCTCTATAAGTCCCTTCT 58.027 37.037 0.00 0.00 0.00 2.85
4363 5075 8.198778 CCACTTTAAGTCTCTATAAGTCCCTTC 58.801 40.741 0.00 0.00 0.00 3.46
4364 5076 7.125963 CCCACTTTAAGTCTCTATAAGTCCCTT 59.874 40.741 0.00 0.00 0.00 3.95
4365 5077 6.612049 CCCACTTTAAGTCTCTATAAGTCCCT 59.388 42.308 0.00 0.00 0.00 4.20
4366 5078 6.685873 GCCCACTTTAAGTCTCTATAAGTCCC 60.686 46.154 0.00 0.00 0.00 4.46
4367 5079 6.127140 TGCCCACTTTAAGTCTCTATAAGTCC 60.127 42.308 0.00 0.00 0.00 3.85
4368 5080 6.875076 TGCCCACTTTAAGTCTCTATAAGTC 58.125 40.000 0.00 0.00 0.00 3.01
4369 5081 6.869206 TGCCCACTTTAAGTCTCTATAAGT 57.131 37.500 0.00 0.00 0.00 2.24
4370 5082 8.616076 CAAATGCCCACTTTAAGTCTCTATAAG 58.384 37.037 0.00 0.00 0.00 1.73
4371 5083 8.325787 TCAAATGCCCACTTTAAGTCTCTATAA 58.674 33.333 0.00 0.00 0.00 0.98
4372 5084 7.857456 TCAAATGCCCACTTTAAGTCTCTATA 58.143 34.615 0.00 0.00 0.00 1.31
4373 5085 6.721318 TCAAATGCCCACTTTAAGTCTCTAT 58.279 36.000 0.00 0.00 0.00 1.98
4374 5086 6.013725 TCTCAAATGCCCACTTTAAGTCTCTA 60.014 38.462 0.00 0.00 0.00 2.43
4375 5087 4.985538 TCAAATGCCCACTTTAAGTCTCT 58.014 39.130 0.00 0.00 0.00 3.10
4376 5088 5.003804 TCTCAAATGCCCACTTTAAGTCTC 58.996 41.667 0.00 0.00 0.00 3.36
4377 5089 4.762251 GTCTCAAATGCCCACTTTAAGTCT 59.238 41.667 0.00 0.00 0.00 3.24
4378 5090 4.762251 AGTCTCAAATGCCCACTTTAAGTC 59.238 41.667 0.00 0.00 0.00 3.01
4379 5091 4.729868 AGTCTCAAATGCCCACTTTAAGT 58.270 39.130 0.00 0.00 0.00 2.24
4380 5092 5.712152 AAGTCTCAAATGCCCACTTTAAG 57.288 39.130 0.00 0.00 0.00 1.85
4381 5093 6.945435 TCATAAGTCTCAAATGCCCACTTTAA 59.055 34.615 0.00 0.00 0.00 1.52
4382 5094 6.480763 TCATAAGTCTCAAATGCCCACTTTA 58.519 36.000 0.00 0.00 0.00 1.85
4383 5095 5.324409 TCATAAGTCTCAAATGCCCACTTT 58.676 37.500 0.00 0.00 0.00 2.66
4384 5096 4.922206 TCATAAGTCTCAAATGCCCACTT 58.078 39.130 0.00 0.00 0.00 3.16
4385 5097 4.574674 TCATAAGTCTCAAATGCCCACT 57.425 40.909 0.00 0.00 0.00 4.00
4386 5098 5.643379 TTTCATAAGTCTCAAATGCCCAC 57.357 39.130 0.00 0.00 0.00 4.61
4387 5099 7.833682 TCTTATTTCATAAGTCTCAAATGCCCA 59.166 33.333 3.93 0.00 42.21 5.36
4388 5100 8.131731 GTCTTATTTCATAAGTCTCAAATGCCC 58.868 37.037 3.93 0.00 42.21 5.36
4389 5101 8.897752 AGTCTTATTTCATAAGTCTCAAATGCC 58.102 33.333 3.93 0.00 42.21 4.40
4397 5109 9.261035 TCCTTGAGAGTCTTATTTCATAAGTCT 57.739 33.333 0.00 3.77 41.61 3.24
4398 5110 9.877178 TTCCTTGAGAGTCTTATTTCATAAGTC 57.123 33.333 0.00 0.00 42.21 3.01
4399 5111 9.883142 CTTCCTTGAGAGTCTTATTTCATAAGT 57.117 33.333 0.00 0.00 42.21 2.24
4400 5112 9.323985 CCTTCCTTGAGAGTCTTATTTCATAAG 57.676 37.037 0.00 0.00 42.78 1.73
4401 5113 9.046846 TCCTTCCTTGAGAGTCTTATTTCATAA 57.953 33.333 0.00 0.00 0.00 1.90
4402 5114 8.478877 GTCCTTCCTTGAGAGTCTTATTTCATA 58.521 37.037 0.00 0.00 0.00 2.15
4403 5115 7.181845 AGTCCTTCCTTGAGAGTCTTATTTCAT 59.818 37.037 0.00 0.00 0.00 2.57
4404 5116 6.498651 AGTCCTTCCTTGAGAGTCTTATTTCA 59.501 38.462 0.00 0.00 0.00 2.69
4405 5117 6.941857 AGTCCTTCCTTGAGAGTCTTATTTC 58.058 40.000 0.00 0.00 0.00 2.17
4406 5118 6.943899 AGTCCTTCCTTGAGAGTCTTATTT 57.056 37.500 0.00 0.00 0.00 1.40
4407 5119 6.943899 AAGTCCTTCCTTGAGAGTCTTATT 57.056 37.500 0.00 0.00 0.00 1.40
4408 5120 9.716556 TTATAAGTCCTTCCTTGAGAGTCTTAT 57.283 33.333 0.00 0.00 32.72 1.73
4409 5121 9.191479 CTTATAAGTCCTTCCTTGAGAGTCTTA 57.809 37.037 4.18 0.00 0.00 2.10
4410 5122 7.896496 TCTTATAAGTCCTTCCTTGAGAGTCTT 59.104 37.037 12.19 0.00 0.00 3.01
4411 5123 7.415086 TCTTATAAGTCCTTCCTTGAGAGTCT 58.585 38.462 12.19 0.00 0.00 3.24
4412 5124 7.648039 TCTTATAAGTCCTTCCTTGAGAGTC 57.352 40.000 12.19 0.00 0.00 3.36
4413 5125 7.363094 CGTTCTTATAAGTCCTTCCTTGAGAGT 60.363 40.741 12.19 0.00 0.00 3.24
4414 5126 6.975772 CGTTCTTATAAGTCCTTCCTTGAGAG 59.024 42.308 12.19 0.00 0.00 3.20
4415 5127 6.436532 ACGTTCTTATAAGTCCTTCCTTGAGA 59.563 38.462 12.19 0.00 0.00 3.27
4416 5128 6.631962 ACGTTCTTATAAGTCCTTCCTTGAG 58.368 40.000 12.19 0.00 0.00 3.02
4417 5129 6.600882 ACGTTCTTATAAGTCCTTCCTTGA 57.399 37.500 12.19 0.00 0.00 3.02
4418 5130 9.680315 CTATACGTTCTTATAAGTCCTTCCTTG 57.320 37.037 12.19 0.00 0.00 3.61
4419 5131 9.418839 ACTATACGTTCTTATAAGTCCTTCCTT 57.581 33.333 12.19 0.00 0.00 3.36
4420 5132 8.993404 ACTATACGTTCTTATAAGTCCTTCCT 57.007 34.615 12.19 0.00 0.00 3.36
4421 5133 9.460906 CAACTATACGTTCTTATAAGTCCTTCC 57.539 37.037 12.19 0.00 32.27 3.46
4471 5183 9.280456 TCCCTATCTATTTGGTTTCTAAGACTT 57.720 33.333 0.00 0.00 0.00 3.01
4472 5184 8.706521 GTCCCTATCTATTTGGTTTCTAAGACT 58.293 37.037 0.00 0.00 0.00 3.24
4473 5185 8.706521 AGTCCCTATCTATTTGGTTTCTAAGAC 58.293 37.037 0.00 0.00 0.00 3.01
4474 5186 8.855804 AGTCCCTATCTATTTGGTTTCTAAGA 57.144 34.615 0.00 0.00 0.00 2.10
4475 5187 9.907229 AAAGTCCCTATCTATTTGGTTTCTAAG 57.093 33.333 0.00 0.00 0.00 2.18
4538 5250 7.148289 GCCTGTTTGGTTTATAAGTCTTAGGAC 60.148 40.741 0.00 0.00 39.27 3.85
4539 5251 6.882678 GCCTGTTTGGTTTATAAGTCTTAGGA 59.117 38.462 0.00 0.00 38.35 2.94
4540 5252 6.095021 GGCCTGTTTGGTTTATAAGTCTTAGG 59.905 42.308 0.00 0.00 38.35 2.69
4541 5253 6.884836 AGGCCTGTTTGGTTTATAAGTCTTAG 59.115 38.462 3.11 0.00 38.35 2.18
4542 5254 6.786122 AGGCCTGTTTGGTTTATAAGTCTTA 58.214 36.000 3.11 0.00 38.35 2.10
4543 5255 5.641155 AGGCCTGTTTGGTTTATAAGTCTT 58.359 37.500 3.11 0.00 38.35 3.01
4544 5256 5.222048 TGAGGCCTGTTTGGTTTATAAGTCT 60.222 40.000 12.00 0.00 38.35 3.24
4545 5257 5.007682 TGAGGCCTGTTTGGTTTATAAGTC 58.992 41.667 12.00 0.00 38.35 3.01
4546 5258 4.993028 TGAGGCCTGTTTGGTTTATAAGT 58.007 39.130 12.00 0.00 38.35 2.24
4547 5259 5.010282 ACTGAGGCCTGTTTGGTTTATAAG 58.990 41.667 12.00 0.00 38.35 1.73
4548 5260 4.993028 ACTGAGGCCTGTTTGGTTTATAA 58.007 39.130 12.00 0.00 38.35 0.98
4549 5261 4.650972 ACTGAGGCCTGTTTGGTTTATA 57.349 40.909 12.00 0.00 38.35 0.98
4550 5262 3.525800 ACTGAGGCCTGTTTGGTTTAT 57.474 42.857 12.00 0.00 38.35 1.40
4551 5263 4.650972 ATACTGAGGCCTGTTTGGTTTA 57.349 40.909 12.00 0.00 38.35 2.01
4552 5264 3.525800 ATACTGAGGCCTGTTTGGTTT 57.474 42.857 12.00 0.00 38.35 3.27
4553 5265 3.329520 TGTATACTGAGGCCTGTTTGGTT 59.670 43.478 12.00 0.00 38.35 3.67
4554 5266 2.910319 TGTATACTGAGGCCTGTTTGGT 59.090 45.455 12.00 3.82 38.35 3.67
4555 5267 3.627395 TGTATACTGAGGCCTGTTTGG 57.373 47.619 12.00 0.00 39.35 3.28
4556 5268 7.807977 AATATTGTATACTGAGGCCTGTTTG 57.192 36.000 12.00 0.00 0.00 2.93
4557 5269 9.726438 GATAATATTGTATACTGAGGCCTGTTT 57.274 33.333 12.00 0.00 0.00 2.83
4558 5270 9.105844 AGATAATATTGTATACTGAGGCCTGTT 57.894 33.333 12.00 0.00 0.00 3.16
4559 5271 8.671987 AGATAATATTGTATACTGAGGCCTGT 57.328 34.615 12.00 5.20 0.00 4.00
4560 5272 9.950496 AAAGATAATATTGTATACTGAGGCCTG 57.050 33.333 12.00 0.00 0.00 4.85
4599 5317 4.142556 GCGACCTATAGATTAGTCCTGCTC 60.143 50.000 0.00 0.00 0.00 4.26
4621 5339 1.235724 ACTTTGTTTCGCTACCCAGC 58.764 50.000 0.00 0.00 44.90 4.85
4622 5340 3.621715 GGATACTTTGTTTCGCTACCCAG 59.378 47.826 0.00 0.00 0.00 4.45
4623 5341 3.008157 TGGATACTTTGTTTCGCTACCCA 59.992 43.478 0.00 0.00 37.61 4.51
4624 5342 3.602483 TGGATACTTTGTTTCGCTACCC 58.398 45.455 0.00 0.00 37.61 3.69
4625 5343 4.142752 GGTTGGATACTTTGTTTCGCTACC 60.143 45.833 0.00 0.00 37.61 3.18
4626 5344 4.435121 CGGTTGGATACTTTGTTTCGCTAC 60.435 45.833 0.00 0.00 37.61 3.58
4627 5345 3.680937 CGGTTGGATACTTTGTTTCGCTA 59.319 43.478 0.00 0.00 37.61 4.26
4628 5346 2.482721 CGGTTGGATACTTTGTTTCGCT 59.517 45.455 0.00 0.00 37.61 4.93
4629 5347 2.846693 CGGTTGGATACTTTGTTTCGC 58.153 47.619 0.00 0.00 37.61 4.70
4630 5348 2.723618 CGCGGTTGGATACTTTGTTTCG 60.724 50.000 0.00 0.00 37.61 3.46
4631 5349 2.846693 CGCGGTTGGATACTTTGTTTC 58.153 47.619 0.00 0.00 37.61 2.78
4632 5350 1.068816 GCGCGGTTGGATACTTTGTTT 60.069 47.619 8.83 0.00 37.61 2.83
4633 5351 0.519961 GCGCGGTTGGATACTTTGTT 59.480 50.000 8.83 0.00 37.61 2.83
4634 5352 0.604243 TGCGCGGTTGGATACTTTGT 60.604 50.000 8.83 0.00 37.61 2.83
4635 5353 0.732571 ATGCGCGGTTGGATACTTTG 59.267 50.000 8.83 0.00 37.61 2.77
4636 5354 2.319136 TATGCGCGGTTGGATACTTT 57.681 45.000 8.83 0.00 37.61 2.66
4637 5355 2.543777 ATATGCGCGGTTGGATACTT 57.456 45.000 8.83 0.00 37.61 2.24
4638 5356 2.143122 CAATATGCGCGGTTGGATACT 58.857 47.619 8.83 0.00 37.61 2.12
4639 5357 1.871039 ACAATATGCGCGGTTGGATAC 59.129 47.619 18.99 0.00 0.00 2.24
4640 5358 2.248280 ACAATATGCGCGGTTGGATA 57.752 45.000 18.99 5.02 0.00 2.59
4641 5359 1.333619 GAACAATATGCGCGGTTGGAT 59.666 47.619 18.99 10.32 0.00 3.41
4642 5360 0.730265 GAACAATATGCGCGGTTGGA 59.270 50.000 18.99 0.00 0.00 3.53
4643 5361 0.449786 TGAACAATATGCGCGGTTGG 59.550 50.000 18.99 5.59 0.00 3.77
4644 5362 2.110990 CATGAACAATATGCGCGGTTG 58.889 47.619 8.83 14.97 0.00 3.77
4645 5363 1.742831 ACATGAACAATATGCGCGGTT 59.257 42.857 8.83 1.25 0.00 4.44
4646 5364 1.378531 ACATGAACAATATGCGCGGT 58.621 45.000 8.83 0.00 0.00 5.68
4647 5365 3.600717 TTACATGAACAATATGCGCGG 57.399 42.857 8.83 0.00 0.00 6.46
4648 5366 7.162546 GCTTATATTACATGAACAATATGCGCG 59.837 37.037 0.00 0.00 31.47 6.86
4649 5367 7.429340 GGCTTATATTACATGAACAATATGCGC 59.571 37.037 0.00 0.00 31.47 6.09
4650 5368 8.668353 AGGCTTATATTACATGAACAATATGCG 58.332 33.333 0.00 3.52 31.47 4.73
4651 5369 9.778993 CAGGCTTATATTACATGAACAATATGC 57.221 33.333 0.00 6.50 31.47 3.14
4654 5372 9.219603 GCTCAGGCTTATATTACATGAACAATA 57.780 33.333 0.00 0.76 35.22 1.90
4655 5373 7.175641 GGCTCAGGCTTATATTACATGAACAAT 59.824 37.037 0.00 0.00 38.73 2.71
4656 5374 6.486657 GGCTCAGGCTTATATTACATGAACAA 59.513 38.462 0.00 0.00 38.73 2.83
4657 5375 5.997746 GGCTCAGGCTTATATTACATGAACA 59.002 40.000 0.00 0.00 38.73 3.18
4658 5376 6.234177 AGGCTCAGGCTTATATTACATGAAC 58.766 40.000 0.00 0.00 33.67 3.18
4659 5377 6.439636 AGGCTCAGGCTTATATTACATGAA 57.560 37.500 0.00 0.00 33.67 2.57
4660 5378 6.233434 CAAGGCTCAGGCTTATATTACATGA 58.767 40.000 14.17 0.00 46.59 3.07
4661 5379 5.413833 CCAAGGCTCAGGCTTATATTACATG 59.586 44.000 14.17 0.00 46.59 3.21
4662 5380 5.310594 TCCAAGGCTCAGGCTTATATTACAT 59.689 40.000 14.17 0.00 46.59 2.29
4663 5381 4.658435 TCCAAGGCTCAGGCTTATATTACA 59.342 41.667 14.17 0.00 46.59 2.41
4664 5382 5.228945 TCCAAGGCTCAGGCTTATATTAC 57.771 43.478 14.17 0.00 46.59 1.89
4665 5383 5.547666 TGATCCAAGGCTCAGGCTTATATTA 59.452 40.000 14.17 4.29 46.59 0.98
4666 5384 4.352001 TGATCCAAGGCTCAGGCTTATATT 59.648 41.667 14.17 0.00 46.59 1.28
4667 5385 3.912528 TGATCCAAGGCTCAGGCTTATAT 59.087 43.478 14.17 9.91 46.59 0.86
4668 5386 3.317406 TGATCCAAGGCTCAGGCTTATA 58.683 45.455 14.17 4.99 46.59 0.98
4669 5387 2.106166 CTGATCCAAGGCTCAGGCTTAT 59.894 50.000 14.17 4.38 46.59 1.73
4670 5388 1.487976 CTGATCCAAGGCTCAGGCTTA 59.512 52.381 14.17 0.00 46.59 3.09
4672 5390 0.913451 ACTGATCCAAGGCTCAGGCT 60.913 55.000 20.45 0.00 41.20 4.58
4673 5391 0.833287 TACTGATCCAAGGCTCAGGC 59.167 55.000 20.45 0.00 41.20 4.85
4674 5392 2.237143 TGTTACTGATCCAAGGCTCAGG 59.763 50.000 20.45 2.96 41.20 3.86
4675 5393 3.616956 TGTTACTGATCCAAGGCTCAG 57.383 47.619 16.23 16.23 42.20 3.35
4676 5394 3.072330 TGTTGTTACTGATCCAAGGCTCA 59.928 43.478 0.00 0.00 0.00 4.26
4677 5395 3.437049 GTGTTGTTACTGATCCAAGGCTC 59.563 47.826 0.00 0.00 0.00 4.70
4678 5396 3.412386 GTGTTGTTACTGATCCAAGGCT 58.588 45.455 0.00 0.00 0.00 4.58
4679 5397 2.488153 GGTGTTGTTACTGATCCAAGGC 59.512 50.000 0.00 0.00 0.00 4.35
4680 5398 3.081804 GGGTGTTGTTACTGATCCAAGG 58.918 50.000 0.00 0.00 0.00 3.61
4681 5399 3.753272 CAGGGTGTTGTTACTGATCCAAG 59.247 47.826 0.00 0.00 32.86 3.61
4682 5400 3.750371 CAGGGTGTTGTTACTGATCCAA 58.250 45.455 0.00 0.00 32.86 3.53
4683 5401 2.552155 GCAGGGTGTTGTTACTGATCCA 60.552 50.000 0.00 0.00 32.86 3.41
4684 5402 2.084546 GCAGGGTGTTGTTACTGATCC 58.915 52.381 0.00 0.00 32.86 3.36
4685 5403 3.059352 AGCAGGGTGTTGTTACTGATC 57.941 47.619 0.00 0.00 32.86 2.92
4686 5404 3.073062 AGAAGCAGGGTGTTGTTACTGAT 59.927 43.478 0.00 0.00 32.86 2.90
4687 5405 2.438021 AGAAGCAGGGTGTTGTTACTGA 59.562 45.455 0.00 0.00 32.86 3.41
4688 5406 2.808543 GAGAAGCAGGGTGTTGTTACTG 59.191 50.000 0.00 0.00 0.00 2.74
4689 5407 2.548067 CGAGAAGCAGGGTGTTGTTACT 60.548 50.000 0.00 0.00 0.00 2.24
4723 5441 5.062809 CGACTGCTTCACCTTCTCTAATTTC 59.937 44.000 0.00 0.00 0.00 2.17
4734 5452 1.005630 GCTGACGACTGCTTCACCT 60.006 57.895 9.29 0.00 37.84 4.00
4736 5454 2.375766 CCGCTGACGACTGCTTCAC 61.376 63.158 13.87 0.00 43.93 3.18
4776 5494 5.243954 CGATTCCCCAGAGAATACATACTGA 59.756 44.000 0.00 0.00 36.60 3.41
4777 5495 5.011125 ACGATTCCCCAGAGAATACATACTG 59.989 44.000 0.00 0.00 36.60 2.74
4778 5496 5.148502 ACGATTCCCCAGAGAATACATACT 58.851 41.667 0.00 0.00 36.60 2.12
4779 5497 5.470047 ACGATTCCCCAGAGAATACATAC 57.530 43.478 0.00 0.00 36.60 2.39
4780 5498 5.741964 GCAACGATTCCCCAGAGAATACATA 60.742 44.000 0.00 0.00 36.60 2.29
4781 5499 4.708177 CAACGATTCCCCAGAGAATACAT 58.292 43.478 0.00 0.00 36.60 2.29
4782 5500 3.681594 GCAACGATTCCCCAGAGAATACA 60.682 47.826 0.00 0.00 36.60 2.29
4783 5501 2.872858 GCAACGATTCCCCAGAGAATAC 59.127 50.000 0.00 0.00 36.60 1.89
4784 5502 2.158813 GGCAACGATTCCCCAGAGAATA 60.159 50.000 0.00 0.00 36.60 1.75
4785 5503 1.408822 GGCAACGATTCCCCAGAGAAT 60.409 52.381 0.00 0.00 39.19 2.40
4786 5504 0.035439 GGCAACGATTCCCCAGAGAA 60.035 55.000 0.00 0.00 0.00 2.87
4787 5505 1.602237 GGCAACGATTCCCCAGAGA 59.398 57.895 0.00 0.00 0.00 3.10
4788 5506 4.225497 GGCAACGATTCCCCAGAG 57.775 61.111 0.00 0.00 0.00 3.35
4800 5518 4.900635 AAAGACCATTGATATCGGCAAC 57.099 40.909 0.00 0.00 0.00 4.17
4801 5519 5.913137 AAAAAGACCATTGATATCGGCAA 57.087 34.783 0.00 0.00 0.00 4.52
4823 5541 8.579006 AGCATTGTCATTTACAGATCAGAAAAA 58.421 29.630 0.00 0.00 39.87 1.94
4824 5542 8.114331 AGCATTGTCATTTACAGATCAGAAAA 57.886 30.769 0.00 0.00 39.87 2.29
4825 5543 7.692460 AGCATTGTCATTTACAGATCAGAAA 57.308 32.000 0.00 0.00 39.87 2.52
4826 5544 8.833493 CATAGCATTGTCATTTACAGATCAGAA 58.167 33.333 0.00 0.00 39.87 3.02
4827 5545 8.206189 TCATAGCATTGTCATTTACAGATCAGA 58.794 33.333 0.00 0.00 39.87 3.27
4828 5546 8.374327 TCATAGCATTGTCATTTACAGATCAG 57.626 34.615 0.00 0.00 39.87 2.90
4829 5547 8.735692 TTCATAGCATTGTCATTTACAGATCA 57.264 30.769 0.00 0.00 39.87 2.92
4830 5548 9.049523 TCTTCATAGCATTGTCATTTACAGATC 57.950 33.333 0.00 0.00 39.87 2.75
4831 5549 8.969260 TCTTCATAGCATTGTCATTTACAGAT 57.031 30.769 0.00 0.00 39.87 2.90
4832 5550 7.011763 GCTCTTCATAGCATTGTCATTTACAGA 59.988 37.037 0.00 0.00 42.30 3.41
4833 5551 7.130917 GCTCTTCATAGCATTGTCATTTACAG 58.869 38.462 0.00 0.00 42.30 2.74
4834 5552 7.019774 GCTCTTCATAGCATTGTCATTTACA 57.980 36.000 0.00 0.00 42.30 2.41
4847 5565 2.208431 AGAATGCGTGCTCTTCATAGC 58.792 47.619 9.34 0.00 43.08 2.97
4848 5566 4.569966 AGAAAGAATGCGTGCTCTTCATAG 59.430 41.667 9.92 0.00 30.57 2.23
4849 5567 4.507710 AGAAAGAATGCGTGCTCTTCATA 58.492 39.130 9.92 0.00 30.57 2.15
4850 5568 3.341823 AGAAAGAATGCGTGCTCTTCAT 58.658 40.909 9.92 0.00 30.57 2.57
4851 5569 2.771089 AGAAAGAATGCGTGCTCTTCA 58.229 42.857 9.92 0.00 30.57 3.02
4852 5570 3.820777 AAGAAAGAATGCGTGCTCTTC 57.179 42.857 0.00 0.00 30.57 2.87
4853 5571 3.817647 AGAAAGAAAGAATGCGTGCTCTT 59.182 39.130 0.00 0.00 33.25 2.85
4854 5572 3.406764 AGAAAGAAAGAATGCGTGCTCT 58.593 40.909 0.00 0.00 0.00 4.09
4855 5573 3.820777 AGAAAGAAAGAATGCGTGCTC 57.179 42.857 0.00 0.00 0.00 4.26
4856 5574 3.316308 ACAAGAAAGAAAGAATGCGTGCT 59.684 39.130 0.00 0.00 0.00 4.40
4857 5575 3.632189 ACAAGAAAGAAAGAATGCGTGC 58.368 40.909 0.00 0.00 0.00 5.34
4858 5576 5.273170 TCAACAAGAAAGAAAGAATGCGTG 58.727 37.500 0.00 0.00 0.00 5.34
4859 5577 5.499139 TCAACAAGAAAGAAAGAATGCGT 57.501 34.783 0.00 0.00 0.00 5.24
4860 5578 6.638063 TCATTCAACAAGAAAGAAAGAATGCG 59.362 34.615 0.00 0.00 40.16 4.73
4861 5579 7.935338 TCATTCAACAAGAAAGAAAGAATGC 57.065 32.000 0.00 0.00 40.16 3.56
4867 5585 7.095910 TGTGCTTTCATTCAACAAGAAAGAAA 58.904 30.769 15.86 7.66 46.04 2.52
4868 5586 6.629128 TGTGCTTTCATTCAACAAGAAAGAA 58.371 32.000 15.86 4.77 46.88 2.52
4869 5587 6.206395 TGTGCTTTCATTCAACAAGAAAGA 57.794 33.333 15.86 1.77 46.88 2.52
4870 5588 6.509039 GCTTGTGCTTTCATTCAACAAGAAAG 60.509 38.462 15.87 9.18 46.73 2.62
4871 5589 5.291614 GCTTGTGCTTTCATTCAACAAGAAA 59.708 36.000 15.87 0.00 36.60 2.52
4872 5590 4.805192 GCTTGTGCTTTCATTCAACAAGAA 59.195 37.500 15.87 0.00 36.25 2.52
4873 5591 4.362279 GCTTGTGCTTTCATTCAACAAGA 58.638 39.130 15.87 0.00 36.25 3.02
4874 5592 4.703899 GCTTGTGCTTTCATTCAACAAG 57.296 40.909 9.00 9.00 36.96 3.16
4888 5606 4.708726 ATGGATAAGACAAAGCTTGTGC 57.291 40.909 0.00 0.00 45.52 4.57
4893 5611 9.920946 TCCTTAATTAATGGATAAGACAAAGCT 57.079 29.630 10.55 0.00 0.00 3.74
4905 5623 9.784531 CAAGCTCTATTCTCCTTAATTAATGGA 57.215 33.333 12.80 12.80 0.00 3.41
4906 5624 9.566432 ACAAGCTCTATTCTCCTTAATTAATGG 57.434 33.333 0.00 3.26 0.00 3.16
4909 5627 9.601217 GTGACAAGCTCTATTCTCCTTAATTAA 57.399 33.333 0.00 0.00 0.00 1.40
4910 5628 8.758829 TGTGACAAGCTCTATTCTCCTTAATTA 58.241 33.333 0.00 0.00 0.00 1.40
4911 5629 7.624549 TGTGACAAGCTCTATTCTCCTTAATT 58.375 34.615 0.00 0.00 0.00 1.40
4912 5630 7.124901 TCTGTGACAAGCTCTATTCTCCTTAAT 59.875 37.037 0.00 0.00 0.00 1.40
4913 5631 6.437477 TCTGTGACAAGCTCTATTCTCCTTAA 59.563 38.462 0.00 0.00 0.00 1.85
4914 5632 5.952347 TCTGTGACAAGCTCTATTCTCCTTA 59.048 40.000 0.00 0.00 0.00 2.69
4915 5633 4.774726 TCTGTGACAAGCTCTATTCTCCTT 59.225 41.667 0.00 0.00 0.00 3.36
4916 5634 4.348486 TCTGTGACAAGCTCTATTCTCCT 58.652 43.478 0.00 0.00 0.00 3.69
4917 5635 4.727507 TCTGTGACAAGCTCTATTCTCC 57.272 45.455 0.00 0.00 0.00 3.71
4918 5636 4.560819 CGTTCTGTGACAAGCTCTATTCTC 59.439 45.833 0.00 0.00 0.00 2.87
4919 5637 4.489810 CGTTCTGTGACAAGCTCTATTCT 58.510 43.478 0.00 0.00 0.00 2.40
4920 5638 3.061429 GCGTTCTGTGACAAGCTCTATTC 59.939 47.826 0.00 0.00 0.00 1.75
4921 5639 2.996621 GCGTTCTGTGACAAGCTCTATT 59.003 45.455 0.00 0.00 0.00 1.73
4922 5640 2.232452 AGCGTTCTGTGACAAGCTCTAT 59.768 45.455 0.00 0.00 0.00 1.98
4923 5641 1.613925 AGCGTTCTGTGACAAGCTCTA 59.386 47.619 0.00 0.00 0.00 2.43
4924 5642 0.390860 AGCGTTCTGTGACAAGCTCT 59.609 50.000 0.00 0.00 0.00 4.09
4925 5643 0.787183 GAGCGTTCTGTGACAAGCTC 59.213 55.000 13.32 13.32 43.11 4.09
4926 5644 0.104855 TGAGCGTTCTGTGACAAGCT 59.895 50.000 0.00 4.62 37.69 3.74
4927 5645 1.151668 ATGAGCGTTCTGTGACAAGC 58.848 50.000 0.00 0.00 0.00 4.01
4928 5646 4.726021 GCAATATGAGCGTTCTGTGACAAG 60.726 45.833 0.00 0.00 0.00 3.16
4929 5647 3.125146 GCAATATGAGCGTTCTGTGACAA 59.875 43.478 0.00 0.00 0.00 3.18
4930 5648 2.672874 GCAATATGAGCGTTCTGTGACA 59.327 45.455 0.00 0.00 0.00 3.58
4931 5649 2.932614 AGCAATATGAGCGTTCTGTGAC 59.067 45.455 0.00 0.00 37.01 3.67
4932 5650 2.931969 CAGCAATATGAGCGTTCTGTGA 59.068 45.455 0.00 0.00 37.01 3.58
4933 5651 2.538333 GCAGCAATATGAGCGTTCTGTG 60.538 50.000 0.00 0.00 37.01 3.66
4934 5652 1.667724 GCAGCAATATGAGCGTTCTGT 59.332 47.619 0.00 0.00 37.01 3.41
4935 5653 1.667212 TGCAGCAATATGAGCGTTCTG 59.333 47.619 0.00 0.00 37.01 3.02
4936 5654 1.667724 GTGCAGCAATATGAGCGTTCT 59.332 47.619 0.00 0.00 37.01 3.01
4937 5655 1.398041 TGTGCAGCAATATGAGCGTTC 59.602 47.619 0.00 0.00 37.01 3.95
4938 5656 1.131126 GTGTGCAGCAATATGAGCGTT 59.869 47.619 0.00 0.00 37.01 4.84
4939 5657 0.729116 GTGTGCAGCAATATGAGCGT 59.271 50.000 0.00 0.00 37.01 5.07
4940 5658 0.728542 TGTGTGCAGCAATATGAGCG 59.271 50.000 0.00 0.00 37.01 5.03
4941 5659 3.066342 AGAATGTGTGCAGCAATATGAGC 59.934 43.478 0.00 0.00 0.00 4.26
4942 5660 4.895224 AGAATGTGTGCAGCAATATGAG 57.105 40.909 0.00 0.00 0.00 2.90
4943 5661 4.945543 AGAAGAATGTGTGCAGCAATATGA 59.054 37.500 0.00 0.00 0.00 2.15
4944 5662 5.244785 AGAAGAATGTGTGCAGCAATATG 57.755 39.130 0.00 0.00 0.00 1.78
4945 5663 5.909621 AAGAAGAATGTGTGCAGCAATAT 57.090 34.783 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.