Multiple sequence alignment - TraesCS3A01G224800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G224800 chr3A 100.000 5757 0 0 1 5757 420808440 420802684 0.000000e+00 10632.0
1 TraesCS3A01G224800 chr3A 94.694 245 12 1 465 708 61315644 61315400 4.210000e-101 379.0
2 TraesCS3A01G224800 chr3A 96.970 33 1 0 2481 2513 639148852 639148884 8.060000e-04 56.5
3 TraesCS3A01G224800 chr3D 95.644 3283 106 19 2494 5757 311640419 311643683 0.000000e+00 5236.0
4 TraesCS3A01G224800 chr3D 93.356 1746 62 17 768 2487 311638562 311640279 0.000000e+00 2532.0
5 TraesCS3A01G224800 chr3D 93.089 246 16 1 464 708 523192594 523192349 5.480000e-95 359.0
6 TraesCS3A01G224800 chr3D 91.538 260 19 3 451 707 129016840 129016581 7.090000e-94 355.0
7 TraesCS3A01G224800 chr3D 94.737 38 1 1 2482 2519 319344211 319344247 2.240000e-04 58.4
8 TraesCS3A01G224800 chr3B 94.311 3445 104 31 2367 5757 409875175 409871769 0.000000e+00 5192.0
9 TraesCS3A01G224800 chr3B 93.035 1608 59 21 771 2367 409876902 409875337 0.000000e+00 2300.0
10 TraesCS3A01G224800 chr3B 84.262 413 52 6 57 458 543584658 543584248 1.940000e-104 390.0
11 TraesCS3A01G224800 chr7B 92.424 462 18 6 5256 5716 688573340 688572895 1.350000e-180 643.0
12 TraesCS3A01G224800 chr7B 77.240 413 70 17 58 458 597152060 597152460 2.700000e-53 220.0
13 TraesCS3A01G224800 chr4D 86.842 418 34 11 57 458 422234695 422234283 1.140000e-121 448.0
14 TraesCS3A01G224800 chr4D 92.771 249 16 2 458 705 30506672 30506425 5.480000e-95 359.0
15 TraesCS3A01G224800 chr6D 85.142 424 40 10 57 458 85165197 85164775 4.150000e-111 412.0
16 TraesCS3A01G224800 chr6D 93.388 242 15 1 464 704 227008003 227007762 1.970000e-94 357.0
17 TraesCS3A01G224800 chr6D 98.246 57 1 0 1 57 85165299 85165243 3.670000e-17 100.0
18 TraesCS3A01G224800 chr4A 85.266 414 45 8 57 458 41966698 41967107 4.150000e-111 412.0
19 TraesCS3A01G224800 chr1B 84.504 413 49 7 57 455 60563157 60563568 1.500000e-105 394.0
20 TraesCS3A01G224800 chr1B 81.884 414 54 11 57 455 60587149 60587556 4.300000e-86 329.0
21 TraesCS3A01G224800 chr1B 77.108 415 68 20 58 458 580222664 580222263 1.260000e-51 215.0
22 TraesCS3A01G224800 chr5D 93.145 248 14 3 463 708 241278062 241278308 1.520000e-95 361.0
23 TraesCS3A01G224800 chr5D 96.364 55 2 0 1 55 356640887 356640833 2.210000e-14 91.6
24 TraesCS3A01G224800 chr5D 100.000 30 0 0 2485 2514 50501968 50501939 8.060000e-04 56.5
25 TraesCS3A01G224800 chr2A 93.776 241 14 1 465 704 217643738 217643978 1.520000e-95 361.0
26 TraesCS3A01G224800 chr2A 93.061 245 15 2 465 708 558519944 558519701 1.970000e-94 357.0
27 TraesCS3A01G224800 chr2A 91.304 46 4 0 702 747 44132842 44132887 4.820000e-06 63.9
28 TraesCS3A01G224800 chr2A 95.122 41 1 1 707 746 478391469 478391429 4.820000e-06 63.9
29 TraesCS3A01G224800 chr2B 93.061 245 16 1 465 708 294202875 294203119 1.970000e-94 357.0
30 TraesCS3A01G224800 chr2B 91.071 56 5 0 1 56 773464069 773464014 6.190000e-10 76.8
31 TraesCS3A01G224800 chr6A 86.090 266 32 5 465 726 53161501 53161237 1.220000e-71 281.0
32 TraesCS3A01G224800 chr1D 77.672 421 63 21 57 458 26648811 26649219 1.610000e-55 228.0
33 TraesCS3A01G224800 chr7D 77.536 414 68 18 58 458 549273705 549274106 5.800000e-55 226.0
34 TraesCS3A01G224800 chr5B 100.000 30 0 0 2485 2514 53255208 53255179 8.060000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G224800 chr3A 420802684 420808440 5756 True 10632 10632 100.000 1 5757 1 chr3A.!!$R2 5756
1 TraesCS3A01G224800 chr3D 311638562 311643683 5121 False 3884 5236 94.500 768 5757 2 chr3D.!!$F2 4989
2 TraesCS3A01G224800 chr3B 409871769 409876902 5133 True 3746 5192 93.673 771 5757 2 chr3B.!!$R2 4986
3 TraesCS3A01G224800 chr6D 85164775 85165299 524 True 256 412 91.694 1 458 2 chr6D.!!$R2 457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 185 0.037790 GTCTTCCTCTGCGAGCAAGT 60.038 55.000 8.44 0.0 30.23 3.16 F
639 707 0.110056 GCAGTCGGTCTCGTTCGTTA 60.110 55.000 0.00 0.0 37.69 3.18 F
683 751 1.076332 GAAAAGCACGGACGCACTAT 58.924 50.000 0.00 0.0 0.00 2.12 F
1709 1780 0.035458 GTGGTGAACTGGTGCTAGCT 59.965 55.000 17.23 0.0 0.00 3.32 F
1710 1781 1.275291 GTGGTGAACTGGTGCTAGCTA 59.725 52.381 17.23 0.0 0.00 3.32 F
1711 1782 2.093447 GTGGTGAACTGGTGCTAGCTAT 60.093 50.000 17.23 0.0 0.00 2.97 F
1712 1783 3.132289 GTGGTGAACTGGTGCTAGCTATA 59.868 47.826 17.23 0.7 0.00 1.31 F
1713 1784 3.967326 TGGTGAACTGGTGCTAGCTATAT 59.033 43.478 17.23 0.0 0.00 0.86 F
3711 4117 0.528466 TCGAGCGCATGAAGGACATC 60.528 55.000 11.47 0.0 37.07 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1158 1229 0.186386 ATGTCGGGGAGGGAGAGTAG 59.814 60.000 0.00 0.0 0.00 2.57 R
1574 1645 0.528684 GAATCTTGAGCGACTCCCCG 60.529 60.000 4.73 0.0 0.00 5.73 R
2026 2100 0.889994 GATGTCAACCATGCAGCCAA 59.110 50.000 0.00 0.0 32.56 4.52 R
2688 3085 0.320697 GGTAGTGGAAACAGAGGCGT 59.679 55.000 0.00 0.0 44.46 5.68 R
3277 3676 3.064207 GCTCGTTGTGTGTTCCTTATCA 58.936 45.455 0.00 0.0 0.00 2.15 R
3389 3794 6.599244 CCTCCTTGCAGATATGTAAAGTCAAA 59.401 38.462 0.00 0.0 0.00 2.69 R
3711 4117 2.643551 AGCCCAATAACATCAACTCCG 58.356 47.619 0.00 0.0 0.00 4.63 R
3798 4204 3.685139 AATAGATATGCTGGGTCCACG 57.315 47.619 0.00 0.0 0.00 4.94 R
5403 5827 0.462047 GGACCTCAATTCGATGCCGT 60.462 55.000 0.00 0.0 37.05 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.579151 ACCAACTCCTTCCTCTCAGTTAC 59.421 47.826 0.00 0.00 0.00 2.50
79 126 1.066858 CAAAGAGAAGTAGGAGCGGCA 60.067 52.381 1.45 0.00 0.00 5.69
80 127 0.820871 AAGAGAAGTAGGAGCGGCAG 59.179 55.000 1.45 0.00 0.00 4.85
131 185 0.037790 GTCTTCCTCTGCGAGCAAGT 60.038 55.000 8.44 0.00 30.23 3.16
132 186 0.244994 TCTTCCTCTGCGAGCAAGTC 59.755 55.000 8.44 0.00 30.23 3.01
133 187 0.246086 CTTCCTCTGCGAGCAAGTCT 59.754 55.000 0.00 0.00 0.00 3.24
134 188 1.474478 CTTCCTCTGCGAGCAAGTCTA 59.526 52.381 0.00 0.00 0.00 2.59
135 189 0.811915 TCCTCTGCGAGCAAGTCTAC 59.188 55.000 0.00 0.00 0.00 2.59
160 215 0.616395 TCATGCCACGGTCCTCCTTA 60.616 55.000 0.00 0.00 0.00 2.69
162 217 0.541863 ATGCCACGGTCCTCCTTAAG 59.458 55.000 0.00 0.00 0.00 1.85
181 246 1.696336 AGAAGAGAAGGCAACAGAGCA 59.304 47.619 0.00 0.00 41.41 4.26
188 253 1.186200 AGGCAACAGAGCATAGTCGA 58.814 50.000 0.00 0.00 41.41 4.20
196 262 5.786401 ACAGAGCATAGTCGATGTTTTTC 57.214 39.130 0.00 0.00 37.90 2.29
203 269 5.572211 CATAGTCGATGTTTTTCCATGGTG 58.428 41.667 12.58 0.00 0.00 4.17
208 274 3.255642 CGATGTTTTTCCATGGTGGTCTT 59.744 43.478 12.58 0.00 39.03 3.01
222 288 2.420722 GTGGTCTTTTTGTTGTCCACGA 59.579 45.455 0.00 0.00 36.48 4.35
223 289 2.420722 TGGTCTTTTTGTTGTCCACGAC 59.579 45.455 0.00 0.00 0.00 4.34
232 298 2.971660 TTGTCCACGACAACTGAGAA 57.028 45.000 3.14 0.00 45.88 2.87
246 312 6.302269 ACAACTGAGAAAGATGATTTCCAGT 58.698 36.000 13.78 13.78 39.39 4.00
247 313 6.206243 ACAACTGAGAAAGATGATTTCCAGTG 59.794 38.462 17.38 14.74 38.59 3.66
252 318 5.738909 AGAAAGATGATTTCCAGTGACGAT 58.261 37.500 0.00 0.00 0.00 3.73
254 320 6.983307 AGAAAGATGATTTCCAGTGACGATAG 59.017 38.462 0.00 0.00 46.19 2.08
306 372 3.562505 TCGAGAACGAAGTAACAAGCTC 58.437 45.455 0.00 0.00 45.00 4.09
307 373 3.004002 TCGAGAACGAAGTAACAAGCTCA 59.996 43.478 0.00 0.00 45.00 4.26
316 382 6.483640 ACGAAGTAACAAGCTCATTTTCTTCT 59.516 34.615 14.12 4.87 41.94 2.85
319 385 6.538263 AGTAACAAGCTCATTTTCTTCTCCT 58.462 36.000 0.00 0.00 0.00 3.69
324 390 2.682352 GCTCATTTTCTTCTCCTGCTCC 59.318 50.000 0.00 0.00 0.00 4.70
329 395 4.345859 TTTTCTTCTCCTGCTCCGTTTA 57.654 40.909 0.00 0.00 0.00 2.01
370 436 9.670719 GAGGTTCTTTTTATTTGACAGAGAAAG 57.329 33.333 0.00 0.00 0.00 2.62
382 448 5.593968 TGACAGAGAAAGTACTGCGTTTTA 58.406 37.500 0.00 0.00 37.61 1.52
390 456 8.026341 AGAAAGTACTGCGTTTTAAGGAATAC 57.974 34.615 0.00 0.00 0.00 1.89
398 464 7.543520 ACTGCGTTTTAAGGAATACTGTAGTAC 59.456 37.037 0.00 0.00 32.72 2.73
409 475 8.818860 AGGAATACTGTAGTACAAATACCACAA 58.181 33.333 4.21 0.00 33.33 3.33
499 567 9.632807 CATTCTATAATGTAGTGCTTCCTCTAC 57.367 37.037 0.00 0.00 38.15 2.59
500 568 7.762588 TCTATAATGTAGTGCTTCCTCTACC 57.237 40.000 0.00 0.00 37.28 3.18
501 569 7.527796 TCTATAATGTAGTGCTTCCTCTACCT 58.472 38.462 0.00 0.00 37.28 3.08
502 570 8.666821 TCTATAATGTAGTGCTTCCTCTACCTA 58.333 37.037 0.00 0.00 37.28 3.08
503 571 5.855740 AATGTAGTGCTTCCTCTACCTAC 57.144 43.478 0.00 0.00 37.28 3.18
504 572 3.276857 TGTAGTGCTTCCTCTACCTACG 58.723 50.000 0.00 0.00 37.28 3.51
505 573 2.510928 AGTGCTTCCTCTACCTACGT 57.489 50.000 0.00 0.00 0.00 3.57
506 574 2.093106 AGTGCTTCCTCTACCTACGTG 58.907 52.381 0.00 0.00 0.00 4.49
507 575 0.815734 TGCTTCCTCTACCTACGTGC 59.184 55.000 0.00 0.00 0.00 5.34
508 576 1.104630 GCTTCCTCTACCTACGTGCT 58.895 55.000 0.00 0.00 0.00 4.40
509 577 1.477295 GCTTCCTCTACCTACGTGCTT 59.523 52.381 0.00 0.00 0.00 3.91
510 578 2.479901 GCTTCCTCTACCTACGTGCTTC 60.480 54.545 0.00 0.00 0.00 3.86
511 579 2.502142 TCCTCTACCTACGTGCTTCA 57.498 50.000 0.00 0.00 0.00 3.02
512 580 2.799017 TCCTCTACCTACGTGCTTCAA 58.201 47.619 0.00 0.00 0.00 2.69
513 581 2.490903 TCCTCTACCTACGTGCTTCAAC 59.509 50.000 0.00 0.00 0.00 3.18
514 582 2.492484 CCTCTACCTACGTGCTTCAACT 59.508 50.000 0.00 0.00 0.00 3.16
515 583 3.056749 CCTCTACCTACGTGCTTCAACTT 60.057 47.826 0.00 0.00 0.00 2.66
516 584 4.557205 CTCTACCTACGTGCTTCAACTTT 58.443 43.478 0.00 0.00 0.00 2.66
517 585 4.304110 TCTACCTACGTGCTTCAACTTTG 58.696 43.478 0.00 0.00 0.00 2.77
518 586 3.188159 ACCTACGTGCTTCAACTTTGA 57.812 42.857 0.00 0.00 34.92 2.69
519 587 2.870411 ACCTACGTGCTTCAACTTTGAC 59.130 45.455 0.00 0.00 36.83 3.18
520 588 2.223377 CCTACGTGCTTCAACTTTGACC 59.777 50.000 0.00 0.00 36.83 4.02
521 589 0.655733 ACGTGCTTCAACTTTGACCG 59.344 50.000 0.00 0.00 36.83 4.79
522 590 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
523 591 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
524 592 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
525 593 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
526 594 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
527 595 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
528 596 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
529 597 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
530 598 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
531 599 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
532 600 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
541 609 8.483307 TGACCGTAAATTTAACTATCAAGACC 57.517 34.615 0.00 0.00 0.00 3.85
542 610 7.276218 TGACCGTAAATTTAACTATCAAGACCG 59.724 37.037 0.00 0.00 0.00 4.79
543 611 7.322664 ACCGTAAATTTAACTATCAAGACCGA 58.677 34.615 0.00 0.00 0.00 4.69
544 612 7.983484 ACCGTAAATTTAACTATCAAGACCGAT 59.017 33.333 0.00 0.00 0.00 4.18
545 613 8.823818 CCGTAAATTTAACTATCAAGACCGATT 58.176 33.333 0.00 0.00 0.00 3.34
546 614 9.632969 CGTAAATTTAACTATCAAGACCGATTG 57.367 33.333 0.00 0.00 0.00 2.67
547 615 9.434559 GTAAATTTAACTATCAAGACCGATTGC 57.565 33.333 0.00 0.00 0.00 3.56
548 616 5.712217 TTTAACTATCAAGACCGATTGCG 57.288 39.130 0.00 0.00 37.24 4.85
549 617 3.520290 AACTATCAAGACCGATTGCGA 57.480 42.857 0.00 0.00 40.82 5.10
550 618 2.810650 ACTATCAAGACCGATTGCGAC 58.189 47.619 0.00 0.00 40.82 5.19
551 619 1.781429 CTATCAAGACCGATTGCGACG 59.219 52.381 0.00 0.00 40.82 5.12
557 625 4.812476 CCGATTGCGACGGGAGCA 62.812 66.667 7.91 0.00 45.65 4.26
562 630 2.110213 TGCGACGGGAGCAAAAGT 59.890 55.556 0.00 0.00 42.18 2.66
563 631 1.525077 TGCGACGGGAGCAAAAGTT 60.525 52.632 0.00 0.00 42.18 2.66
564 632 0.249953 TGCGACGGGAGCAAAAGTTA 60.250 50.000 0.00 0.00 42.18 2.24
565 633 1.084289 GCGACGGGAGCAAAAGTTAT 58.916 50.000 0.00 0.00 34.19 1.89
566 634 2.273557 GCGACGGGAGCAAAAGTTATA 58.726 47.619 0.00 0.00 34.19 0.98
567 635 2.870411 GCGACGGGAGCAAAAGTTATAT 59.130 45.455 0.00 0.00 34.19 0.86
568 636 3.059800 GCGACGGGAGCAAAAGTTATATC 60.060 47.826 0.00 0.00 34.19 1.63
569 637 4.116961 CGACGGGAGCAAAAGTTATATCA 58.883 43.478 0.00 0.00 0.00 2.15
570 638 4.209288 CGACGGGAGCAAAAGTTATATCAG 59.791 45.833 0.00 0.00 0.00 2.90
571 639 5.099042 ACGGGAGCAAAAGTTATATCAGT 57.901 39.130 0.00 0.00 0.00 3.41
572 640 4.876107 ACGGGAGCAAAAGTTATATCAGTG 59.124 41.667 0.00 0.00 0.00 3.66
573 641 5.116180 CGGGAGCAAAAGTTATATCAGTGA 58.884 41.667 0.00 0.00 0.00 3.41
574 642 5.760253 CGGGAGCAAAAGTTATATCAGTGAT 59.240 40.000 11.12 11.12 0.00 3.06
575 643 6.260936 CGGGAGCAAAAGTTATATCAGTGATT 59.739 38.462 11.68 2.21 0.00 2.57
576 644 7.201732 CGGGAGCAAAAGTTATATCAGTGATTT 60.202 37.037 11.68 6.10 0.00 2.17
577 645 8.470002 GGGAGCAAAAGTTATATCAGTGATTTT 58.530 33.333 11.68 2.41 0.00 1.82
578 646 9.294030 GGAGCAAAAGTTATATCAGTGATTTTG 57.706 33.333 11.68 15.29 38.53 2.44
579 647 9.846248 GAGCAAAAGTTATATCAGTGATTTTGT 57.154 29.630 20.36 12.08 38.05 2.83
618 686 9.628746 TTTTTAATTATGTAACTTTTCTCCCGC 57.371 29.630 0.00 0.00 0.00 6.13
619 687 5.830000 AATTATGTAACTTTTCTCCCGCC 57.170 39.130 0.00 0.00 0.00 6.13
620 688 1.734163 ATGTAACTTTTCTCCCGCCG 58.266 50.000 0.00 0.00 0.00 6.46
621 689 0.952010 TGTAACTTTTCTCCCGCCGC 60.952 55.000 0.00 0.00 0.00 6.53
622 690 0.952010 GTAACTTTTCTCCCGCCGCA 60.952 55.000 0.00 0.00 0.00 5.69
623 691 0.672401 TAACTTTTCTCCCGCCGCAG 60.672 55.000 0.00 0.00 0.00 5.18
624 692 2.358737 CTTTTCTCCCGCCGCAGT 60.359 61.111 0.00 0.00 0.00 4.40
625 693 2.358247 TTTTCTCCCGCCGCAGTC 60.358 61.111 0.00 0.00 0.00 3.51
626 694 4.735132 TTTCTCCCGCCGCAGTCG 62.735 66.667 0.00 0.00 0.00 4.18
636 704 2.870161 CGCAGTCGGTCTCGTTCG 60.870 66.667 0.00 0.00 37.69 3.95
637 705 2.254651 GCAGTCGGTCTCGTTCGT 59.745 61.111 0.00 0.00 37.69 3.85
638 706 1.371389 GCAGTCGGTCTCGTTCGTT 60.371 57.895 0.00 0.00 37.69 3.85
639 707 0.110056 GCAGTCGGTCTCGTTCGTTA 60.110 55.000 0.00 0.00 37.69 3.18
640 708 1.664016 GCAGTCGGTCTCGTTCGTTAA 60.664 52.381 0.00 0.00 37.69 2.01
641 709 2.653890 CAGTCGGTCTCGTTCGTTAAA 58.346 47.619 0.00 0.00 37.69 1.52
642 710 3.240069 CAGTCGGTCTCGTTCGTTAAAT 58.760 45.455 0.00 0.00 37.69 1.40
643 711 3.671928 CAGTCGGTCTCGTTCGTTAAATT 59.328 43.478 0.00 0.00 37.69 1.82
644 712 4.149396 CAGTCGGTCTCGTTCGTTAAATTT 59.851 41.667 0.00 0.00 37.69 1.82
645 713 5.343058 CAGTCGGTCTCGTTCGTTAAATTTA 59.657 40.000 0.00 0.00 37.69 1.40
646 714 6.034256 CAGTCGGTCTCGTTCGTTAAATTTAT 59.966 38.462 0.00 0.00 37.69 1.40
647 715 6.034256 AGTCGGTCTCGTTCGTTAAATTTATG 59.966 38.462 0.00 0.00 37.69 1.90
648 716 6.033831 GTCGGTCTCGTTCGTTAAATTTATGA 59.966 38.462 0.00 0.00 37.69 2.15
649 717 6.753279 TCGGTCTCGTTCGTTAAATTTATGAT 59.247 34.615 0.00 0.00 37.69 2.45
650 718 7.043854 TCGGTCTCGTTCGTTAAATTTATGATC 60.044 37.037 0.00 0.07 37.69 2.92
651 719 7.253850 CGGTCTCGTTCGTTAAATTTATGATCA 60.254 37.037 0.00 0.00 0.00 2.92
652 720 8.385111 GGTCTCGTTCGTTAAATTTATGATCAA 58.615 33.333 0.00 0.00 0.00 2.57
653 721 9.749490 GTCTCGTTCGTTAAATTTATGATCAAA 57.251 29.630 0.00 0.00 0.00 2.69
654 722 9.967245 TCTCGTTCGTTAAATTTATGATCAAAG 57.033 29.630 0.00 2.11 0.00 2.77
655 723 9.755064 CTCGTTCGTTAAATTTATGATCAAAGT 57.245 29.630 0.00 0.00 0.00 2.66
660 728 9.749490 TCGTTAAATTTATGATCAAAGTTCGAC 57.251 29.630 0.00 0.00 29.44 4.20
661 729 8.995906 CGTTAAATTTATGATCAAAGTTCGACC 58.004 33.333 0.00 0.00 29.44 4.79
664 732 6.589830 ATTTATGATCAAAGTTCGACCTCG 57.410 37.500 0.00 0.00 41.45 4.63
673 741 4.238385 TCGACCTCGAAAAGCACG 57.762 55.556 0.00 0.00 46.30 5.34
674 742 1.372499 TCGACCTCGAAAAGCACGG 60.372 57.895 0.00 0.00 46.30 4.94
675 743 1.372499 CGACCTCGAAAAGCACGGA 60.372 57.895 0.00 0.00 43.02 4.69
676 744 1.615107 CGACCTCGAAAAGCACGGAC 61.615 60.000 0.00 0.00 43.02 4.79
677 745 1.615107 GACCTCGAAAAGCACGGACG 61.615 60.000 0.00 0.00 0.00 4.79
678 746 2.470286 CTCGAAAAGCACGGACGC 59.530 61.111 0.00 0.00 0.00 5.19
679 747 2.279584 TCGAAAAGCACGGACGCA 60.280 55.556 0.00 0.00 0.00 5.24
680 748 2.127758 CGAAAAGCACGGACGCAC 60.128 61.111 0.00 0.00 0.00 5.34
681 749 2.594962 CGAAAAGCACGGACGCACT 61.595 57.895 0.00 0.00 0.00 4.40
682 750 1.279527 CGAAAAGCACGGACGCACTA 61.280 55.000 0.00 0.00 0.00 2.74
683 751 1.076332 GAAAAGCACGGACGCACTAT 58.924 50.000 0.00 0.00 0.00 2.12
684 752 2.264813 GAAAAGCACGGACGCACTATA 58.735 47.619 0.00 0.00 0.00 1.31
685 753 2.596904 AAAGCACGGACGCACTATAT 57.403 45.000 0.00 0.00 0.00 0.86
686 754 2.596904 AAGCACGGACGCACTATATT 57.403 45.000 0.00 0.00 0.00 1.28
687 755 2.596904 AGCACGGACGCACTATATTT 57.403 45.000 0.00 0.00 0.00 1.40
688 756 2.901249 AGCACGGACGCACTATATTTT 58.099 42.857 0.00 0.00 0.00 1.82
689 757 4.049546 AGCACGGACGCACTATATTTTA 57.950 40.909 0.00 0.00 0.00 1.52
690 758 4.049186 AGCACGGACGCACTATATTTTAG 58.951 43.478 0.00 0.00 0.00 1.85
691 759 4.046462 GCACGGACGCACTATATTTTAGA 58.954 43.478 0.00 0.00 0.00 2.10
692 760 4.505191 GCACGGACGCACTATATTTTAGAA 59.495 41.667 0.00 0.00 0.00 2.10
693 761 5.176958 GCACGGACGCACTATATTTTAGAAT 59.823 40.000 0.00 0.00 0.00 2.40
694 762 6.581370 CACGGACGCACTATATTTTAGAATG 58.419 40.000 0.00 0.00 0.00 2.67
695 763 5.694910 ACGGACGCACTATATTTTAGAATGG 59.305 40.000 0.00 0.00 0.00 3.16
696 764 5.924254 CGGACGCACTATATTTTAGAATGGA 59.076 40.000 0.00 0.00 0.00 3.41
697 765 6.089551 CGGACGCACTATATTTTAGAATGGAG 59.910 42.308 0.00 0.00 0.00 3.86
698 766 6.369065 GGACGCACTATATTTTAGAATGGAGG 59.631 42.308 0.00 0.00 0.00 4.30
699 767 6.231211 ACGCACTATATTTTAGAATGGAGGG 58.769 40.000 0.00 0.00 0.00 4.30
700 768 6.042781 ACGCACTATATTTTAGAATGGAGGGA 59.957 38.462 0.00 0.00 0.00 4.20
701 769 6.591834 CGCACTATATTTTAGAATGGAGGGAG 59.408 42.308 0.00 0.00 0.00 4.30
702 770 7.454225 GCACTATATTTTAGAATGGAGGGAGT 58.546 38.462 0.00 0.00 0.00 3.85
703 771 8.594550 GCACTATATTTTAGAATGGAGGGAGTA 58.405 37.037 0.00 0.00 0.00 2.59
705 773 9.900112 ACTATATTTTAGAATGGAGGGAGTAGT 57.100 33.333 0.00 0.00 0.00 2.73
710 778 8.855804 TTTTAGAATGGAGGGAGTAGTATTCT 57.144 34.615 0.00 0.00 38.18 2.40
711 779 8.480133 TTTAGAATGGAGGGAGTAGTATTCTC 57.520 38.462 0.00 0.00 36.56 2.87
712 780 6.031964 AGAATGGAGGGAGTAGTATTCTCA 57.968 41.667 0.00 0.00 31.30 3.27
713 781 6.444704 AGAATGGAGGGAGTAGTATTCTCAA 58.555 40.000 0.00 0.00 31.30 3.02
714 782 6.903534 AGAATGGAGGGAGTAGTATTCTCAAA 59.096 38.462 0.00 0.00 31.30 2.69
715 783 7.403231 AGAATGGAGGGAGTAGTATTCTCAAAA 59.597 37.037 0.00 0.00 31.30 2.44
716 784 7.698163 ATGGAGGGAGTAGTATTCTCAAAAT 57.302 36.000 0.00 0.00 34.04 1.82
717 785 8.798975 ATGGAGGGAGTAGTATTCTCAAAATA 57.201 34.615 0.00 0.00 34.04 1.40
718 786 8.019656 TGGAGGGAGTAGTATTCTCAAAATAC 57.980 38.462 0.00 0.68 34.04 1.89
719 787 7.844779 TGGAGGGAGTAGTATTCTCAAAATACT 59.155 37.037 13.30 13.30 43.58 2.12
720 788 8.706521 GGAGGGAGTAGTATTCTCAAAATACTT 58.293 37.037 13.83 0.19 41.93 2.24
743 811 9.944376 ACTTAGAAAATGTAGAGCTATCAAACA 57.056 29.630 0.00 0.00 0.00 2.83
745 813 7.856145 AGAAAATGTAGAGCTATCAAACAGG 57.144 36.000 0.00 0.00 30.12 4.00
746 814 6.825721 AGAAAATGTAGAGCTATCAAACAGGG 59.174 38.462 0.00 0.00 30.12 4.45
747 815 5.957771 AATGTAGAGCTATCAAACAGGGA 57.042 39.130 0.00 0.00 30.12 4.20
748 816 4.737855 TGTAGAGCTATCAAACAGGGAC 57.262 45.455 0.00 0.00 0.00 4.46
749 817 2.969628 AGAGCTATCAAACAGGGACG 57.030 50.000 0.00 0.00 0.00 4.79
750 818 2.457598 AGAGCTATCAAACAGGGACGA 58.542 47.619 0.00 0.00 0.00 4.20
751 819 2.166664 AGAGCTATCAAACAGGGACGAC 59.833 50.000 0.00 0.00 0.00 4.34
752 820 1.899814 AGCTATCAAACAGGGACGACA 59.100 47.619 0.00 0.00 0.00 4.35
753 821 2.301870 AGCTATCAAACAGGGACGACAA 59.698 45.455 0.00 0.00 0.00 3.18
754 822 3.071479 GCTATCAAACAGGGACGACAAA 58.929 45.455 0.00 0.00 0.00 2.83
755 823 3.689649 GCTATCAAACAGGGACGACAAAT 59.310 43.478 0.00 0.00 0.00 2.32
756 824 4.873827 GCTATCAAACAGGGACGACAAATA 59.126 41.667 0.00 0.00 0.00 1.40
757 825 5.527582 GCTATCAAACAGGGACGACAAATAT 59.472 40.000 0.00 0.00 0.00 1.28
758 826 6.704493 GCTATCAAACAGGGACGACAAATATA 59.296 38.462 0.00 0.00 0.00 0.86
759 827 6.920569 ATCAAACAGGGACGACAAATATAC 57.079 37.500 0.00 0.00 0.00 1.47
760 828 6.045072 TCAAACAGGGACGACAAATATACT 57.955 37.500 0.00 0.00 0.00 2.12
761 829 6.469410 TCAAACAGGGACGACAAATATACTT 58.531 36.000 0.00 0.00 0.00 2.24
762 830 6.592607 TCAAACAGGGACGACAAATATACTTC 59.407 38.462 0.00 0.00 0.00 3.01
763 831 5.934402 ACAGGGACGACAAATATACTTCT 57.066 39.130 0.00 0.00 0.00 2.85
764 832 5.903810 ACAGGGACGACAAATATACTTCTC 58.096 41.667 0.00 0.00 0.00 2.87
765 833 5.163437 ACAGGGACGACAAATATACTTCTCC 60.163 44.000 0.00 0.00 0.00 3.71
766 834 4.344390 AGGGACGACAAATATACTTCTCCC 59.656 45.833 0.00 0.00 35.90 4.30
767 835 4.344390 GGGACGACAAATATACTTCTCCCT 59.656 45.833 0.00 0.00 33.29 4.20
768 836 5.537674 GGGACGACAAATATACTTCTCCCTA 59.462 44.000 0.00 0.00 33.29 3.53
769 837 6.445475 GGACGACAAATATACTTCTCCCTAC 58.555 44.000 0.00 0.00 0.00 3.18
773 841 7.123847 ACGACAAATATACTTCTCCCTACACTT 59.876 37.037 0.00 0.00 0.00 3.16
874 943 2.817258 CCAAAGCCTCGAATAAACCACA 59.183 45.455 0.00 0.00 0.00 4.17
1154 1225 3.928992 GGTAAAACCAACCGCTCTAGTAC 59.071 47.826 0.00 0.00 38.42 2.73
1155 1226 2.756840 AAACCAACCGCTCTAGTACC 57.243 50.000 0.00 0.00 0.00 3.34
1158 1229 1.683418 CCAACCGCTCTAGTACCCCC 61.683 65.000 0.00 0.00 0.00 5.40
1508 1579 3.083997 GGGCCGGTGATCCAGTCT 61.084 66.667 1.90 0.00 0.00 3.24
1574 1645 2.355132 TCTCGATAAGCTCCAGTTCGTC 59.645 50.000 0.00 0.00 0.00 4.20
1653 1724 6.603940 AGCTATGAAAGGTTAAAATTGCCA 57.396 33.333 0.00 0.00 29.36 4.92
1698 1769 2.820330 CATTGGTGGTTTGTGGTGAAC 58.180 47.619 0.00 0.00 0.00 3.18
1704 1775 0.102300 GGTTTGTGGTGAACTGGTGC 59.898 55.000 0.00 0.00 0.00 5.01
1705 1776 1.102978 GTTTGTGGTGAACTGGTGCT 58.897 50.000 0.00 0.00 0.00 4.40
1706 1777 2.294074 GTTTGTGGTGAACTGGTGCTA 58.706 47.619 0.00 0.00 0.00 3.49
1707 1778 2.254546 TTGTGGTGAACTGGTGCTAG 57.745 50.000 0.00 0.00 0.00 3.42
1708 1779 0.250295 TGTGGTGAACTGGTGCTAGC 60.250 55.000 8.10 8.10 0.00 3.42
1709 1780 0.035458 GTGGTGAACTGGTGCTAGCT 59.965 55.000 17.23 0.00 0.00 3.32
1710 1781 1.275291 GTGGTGAACTGGTGCTAGCTA 59.725 52.381 17.23 0.00 0.00 3.32
1711 1782 2.093447 GTGGTGAACTGGTGCTAGCTAT 60.093 50.000 17.23 0.00 0.00 2.97
1712 1783 3.132289 GTGGTGAACTGGTGCTAGCTATA 59.868 47.826 17.23 0.70 0.00 1.31
1713 1784 3.967326 TGGTGAACTGGTGCTAGCTATAT 59.033 43.478 17.23 0.00 0.00 0.86
1714 1785 4.039245 TGGTGAACTGGTGCTAGCTATATC 59.961 45.833 17.23 7.46 0.00 1.63
1715 1786 4.039245 GGTGAACTGGTGCTAGCTATATCA 59.961 45.833 17.23 9.89 0.00 2.15
1716 1787 5.226396 GTGAACTGGTGCTAGCTATATCAG 58.774 45.833 17.23 13.83 0.00 2.90
1717 1788 4.895889 TGAACTGGTGCTAGCTATATCAGT 59.104 41.667 17.23 14.50 35.79 3.41
1718 1789 5.363868 TGAACTGGTGCTAGCTATATCAGTT 59.636 40.000 24.52 24.52 43.72 3.16
1719 1790 5.878406 ACTGGTGCTAGCTATATCAGTTT 57.122 39.130 17.23 0.00 30.95 2.66
1720 1791 6.978674 ACTGGTGCTAGCTATATCAGTTTA 57.021 37.500 17.23 0.00 30.95 2.01
1721 1792 7.546250 ACTGGTGCTAGCTATATCAGTTTAT 57.454 36.000 17.23 0.00 30.95 1.40
1722 1793 7.607250 ACTGGTGCTAGCTATATCAGTTTATC 58.393 38.462 17.23 0.00 30.95 1.75
1723 1794 7.233553 ACTGGTGCTAGCTATATCAGTTTATCA 59.766 37.037 17.23 0.00 30.95 2.15
1724 1795 7.962441 TGGTGCTAGCTATATCAGTTTATCAA 58.038 34.615 17.23 0.00 0.00 2.57
1725 1796 8.090831 TGGTGCTAGCTATATCAGTTTATCAAG 58.909 37.037 17.23 0.00 0.00 3.02
1726 1797 7.064016 GGTGCTAGCTATATCAGTTTATCAAGC 59.936 40.741 17.23 0.00 0.00 4.01
1727 1798 7.600375 GTGCTAGCTATATCAGTTTATCAAGCA 59.400 37.037 17.23 0.00 0.00 3.91
1728 1799 8.316946 TGCTAGCTATATCAGTTTATCAAGCAT 58.683 33.333 17.23 0.00 0.00 3.79
1729 1800 9.160496 GCTAGCTATATCAGTTTATCAAGCATT 57.840 33.333 7.70 0.00 0.00 3.56
1799 1870 5.346551 GGTTTTGCGTTATGAAAATGGTACC 59.653 40.000 4.43 4.43 0.00 3.34
1975 2049 5.116882 GTCCAATAGGTGATGAACAGTACC 58.883 45.833 0.00 0.00 35.89 3.34
1983 2057 6.779860 AGGTGATGAACAGTACCTGTATTTT 58.220 36.000 10.48 0.00 44.62 1.82
1984 2058 7.231467 AGGTGATGAACAGTACCTGTATTTTT 58.769 34.615 10.48 0.00 44.62 1.94
2026 2100 8.408043 TCATTGACTAAAGTGATTTGGAACAT 57.592 30.769 0.00 0.00 39.30 2.71
2085 2160 5.195001 TCAGTAAAACCAAAACTGATGGC 57.805 39.130 0.46 0.00 43.45 4.40
2107 2182 5.107133 GCGTAATTTAGTAGCTTCAGGACA 58.893 41.667 0.00 0.00 0.00 4.02
2455 2719 4.764172 TCTCTAAATCTTCCAGCAGCTTC 58.236 43.478 0.00 0.00 0.00 3.86
2686 3083 4.151335 CACTGGATTTTCTTCTGACACTCG 59.849 45.833 0.00 0.00 0.00 4.18
2688 3085 5.010719 ACTGGATTTTCTTCTGACACTCGTA 59.989 40.000 0.00 0.00 0.00 3.43
3192 3590 8.749841 ATACTCAAATACTTCTGATATGACGC 57.250 34.615 0.00 0.00 0.00 5.19
3220 3618 7.625828 ACTTTAAACTCTTTGTAACTGCTGT 57.374 32.000 0.00 0.00 0.00 4.40
3233 3632 4.367039 AACTGCTGTTAACTGTACCCAT 57.633 40.909 7.26 0.00 34.15 4.00
3326 3731 6.403636 GCAAGAATCAATACAAACAGTCGGAT 60.404 38.462 0.00 0.00 0.00 4.18
3332 3737 7.114866 TCAATACAAACAGTCGGATACCATA 57.885 36.000 0.00 0.00 0.00 2.74
3389 3794 8.950210 GCATTTGGATACTGTATTGTGCTATAT 58.050 33.333 1.22 0.00 37.61 0.86
3711 4117 0.528466 TCGAGCGCATGAAGGACATC 60.528 55.000 11.47 0.00 37.07 3.06
3798 4204 6.093633 GTGATGGAATTAGTGTACAAGGGAAC 59.906 42.308 0.00 0.00 0.00 3.62
3941 4348 4.473477 ACAGTTTATCAGTGAGGCCTAC 57.527 45.455 4.42 4.59 0.00 3.18
3959 4366 7.235804 AGGCCTACCAAACTTCTTTATTTGTA 58.764 34.615 1.29 0.00 39.06 2.41
4136 4544 5.065859 GTGCTTAAGGGTTTTGCAAAAATGT 59.934 36.000 25.40 13.54 35.34 2.71
4144 4552 3.754188 TTTGCAAAAATGTTGTGTGGC 57.246 38.095 10.02 0.00 0.00 5.01
4234 4642 4.534103 AGGCCTTCTTAGTTCATCTCAGTT 59.466 41.667 0.00 0.00 0.00 3.16
4261 4669 1.337703 TGCCACTTGTGCAACTGATTC 59.662 47.619 0.00 0.00 38.04 2.52
4445 4854 4.404507 TTTAACTTCTAAGCGCTGCAAG 57.595 40.909 12.58 15.83 0.00 4.01
4454 4863 0.955919 AGCGCTGCAAGTTTAGGTCC 60.956 55.000 10.39 0.00 35.30 4.46
4746 5155 6.072508 GGTCATCTTACTGAAGAATTGCAACA 60.073 38.462 0.00 0.00 44.85 3.33
4770 5179 1.134007 TGCTTGATGATGGCCAGTAGG 60.134 52.381 13.05 0.00 38.23 3.18
4811 5221 3.368531 GGTCTTACCGTTCTCAGCTCAAT 60.369 47.826 0.00 0.00 0.00 2.57
4849 5266 2.232208 GAGTTCATTCCCTTTTGCTGGG 59.768 50.000 0.00 0.00 45.90 4.45
4940 5357 5.293814 CAGTCATTCATCTACTCAGCAAAGG 59.706 44.000 0.00 0.00 0.00 3.11
4947 5364 2.371841 TCTACTCAGCAAAGGAAAGGCA 59.628 45.455 0.00 0.00 0.00 4.75
5009 5426 3.436700 GGTTGTTCAACCCTTTCTGTG 57.563 47.619 20.27 0.00 36.84 3.66
5024 5441 5.335191 CCTTTCTGTGTTAGTTCCTTGCATC 60.335 44.000 0.00 0.00 0.00 3.91
5107 5524 5.868257 TCTTTTGCGTATGTTAATGAGCAG 58.132 37.500 0.00 0.00 33.22 4.24
5224 5641 0.749454 GAATCAGTGCCGCCCATCTT 60.749 55.000 0.00 0.00 0.00 2.40
5279 5699 1.001406 GTGCTGACCTGCTGTCTACTT 59.999 52.381 8.16 0.00 44.75 2.24
5355 5779 3.724508 TGGTGTAGCCACAAATGTTTG 57.275 42.857 4.04 4.04 43.61 2.93
5358 5782 1.000827 TGTAGCCACAAATGTTTGCCG 60.001 47.619 5.44 0.00 41.79 5.69
5366 5790 0.755686 AAATGTTTGCCGCCCTTCAA 59.244 45.000 0.00 0.00 0.00 2.69
5423 5847 1.160329 CGGCATCGAATTGAGGTCCC 61.160 60.000 0.00 0.00 39.00 4.46
5502 5926 9.947189 ATGCATTGGATCATATATATCCCTTTT 57.053 29.630 11.83 0.00 42.00 2.27
5563 6006 7.865889 TGCTTATGATGTTACTGAACTATACCG 59.134 37.037 0.00 0.00 36.45 4.02
5597 6040 4.141482 TGGTGCTGAGTCTTAGGTTTTCTT 60.141 41.667 0.00 0.00 0.00 2.52
5598 6041 4.452795 GGTGCTGAGTCTTAGGTTTTCTTC 59.547 45.833 0.00 0.00 0.00 2.87
5599 6042 5.301555 GTGCTGAGTCTTAGGTTTTCTTCT 58.698 41.667 0.00 0.00 0.00 2.85
5617 6060 4.747108 TCTTCTCGCTTTTCTTCTGTCTTG 59.253 41.667 0.00 0.00 0.00 3.02
5662 6110 6.499350 TGTGGTCCTAAGTAACTTATTGGAGT 59.501 38.462 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 0.946221 ACTTCTCTTTGTGCTCGCCG 60.946 55.000 0.00 0.00 0.00 6.46
79 126 3.380637 GCCTGATGAAGATTGCAATCACT 59.619 43.478 34.59 23.70 37.89 3.41
80 127 3.703420 GCCTGATGAAGATTGCAATCAC 58.297 45.455 34.59 27.42 37.89 3.06
149 204 3.131400 CCTTCTCTTCTTAAGGAGGACCG 59.869 52.174 11.02 2.12 44.27 4.79
152 207 3.791320 TGCCTTCTCTTCTTAAGGAGGA 58.209 45.455 11.02 4.59 44.27 3.71
160 215 2.105477 TGCTCTGTTGCCTTCTCTTCTT 59.895 45.455 0.00 0.00 0.00 2.52
162 217 2.175878 TGCTCTGTTGCCTTCTCTTC 57.824 50.000 0.00 0.00 0.00 2.87
181 246 4.640201 CCACCATGGAAAAACATCGACTAT 59.360 41.667 21.47 0.00 40.96 2.12
188 253 5.628797 AAAAGACCACCATGGAAAAACAT 57.371 34.783 21.47 0.00 40.96 2.71
196 262 3.492482 GGACAACAAAAAGACCACCATGG 60.492 47.826 11.19 11.19 45.02 3.66
203 269 2.420722 TGTCGTGGACAACAAAAAGACC 59.579 45.455 0.00 0.00 39.78 3.85
222 288 6.206243 CACTGGAAATCATCTTTCTCAGTTGT 59.794 38.462 13.98 0.00 37.59 3.32
223 289 6.429078 TCACTGGAAATCATCTTTCTCAGTTG 59.571 38.462 13.98 11.38 37.59 3.16
227 293 4.931601 CGTCACTGGAAATCATCTTTCTCA 59.068 41.667 0.00 0.00 0.00 3.27
230 296 6.980978 TCTATCGTCACTGGAAATCATCTTTC 59.019 38.462 0.00 0.00 0.00 2.62
231 297 6.878317 TCTATCGTCACTGGAAATCATCTTT 58.122 36.000 0.00 0.00 0.00 2.52
232 298 6.471233 TCTATCGTCACTGGAAATCATCTT 57.529 37.500 0.00 0.00 0.00 2.40
246 312 4.266070 GCCGCCGCTCTATCGTCA 62.266 66.667 0.00 0.00 0.00 4.35
272 338 0.879765 TTCTCGACTCCTCGTTCACC 59.120 55.000 0.00 0.00 41.02 4.02
290 356 6.619801 AGAAAATGAGCTTGTTACTTCGTT 57.380 33.333 0.00 0.00 0.00 3.85
297 363 5.182001 GCAGGAGAAGAAAATGAGCTTGTTA 59.818 40.000 0.00 0.00 0.00 2.41
302 368 3.608796 GAGCAGGAGAAGAAAATGAGCT 58.391 45.455 0.00 0.00 0.00 4.09
306 372 2.704572 ACGGAGCAGGAGAAGAAAATG 58.295 47.619 0.00 0.00 0.00 2.32
307 373 3.425162 AACGGAGCAGGAGAAGAAAAT 57.575 42.857 0.00 0.00 0.00 1.82
337 403 7.076362 GTCAAATAAAAAGAACCTCGAACCTC 58.924 38.462 0.00 0.00 0.00 3.85
342 408 7.214381 TCTCTGTCAAATAAAAAGAACCTCGA 58.786 34.615 0.00 0.00 0.00 4.04
345 411 9.190317 ACTTTCTCTGTCAAATAAAAAGAACCT 57.810 29.630 0.00 0.00 0.00 3.50
370 436 6.716898 ACAGTATTCCTTAAAACGCAGTAC 57.283 37.500 0.00 0.00 45.00 2.73
382 448 8.818860 TGTGGTATTTGTACTACAGTATTCCTT 58.181 33.333 1.36 0.00 36.69 3.36
473 541 9.632807 GTAGAGGAAGCACTACATTATAGAATG 57.367 37.037 8.52 8.52 46.77 2.67
474 542 8.808092 GGTAGAGGAAGCACTACATTATAGAAT 58.192 37.037 0.00 0.00 40.19 2.40
475 543 8.005388 AGGTAGAGGAAGCACTACATTATAGAA 58.995 37.037 0.00 0.00 40.19 2.10
476 544 7.527796 AGGTAGAGGAAGCACTACATTATAGA 58.472 38.462 0.00 0.00 40.19 1.98
477 545 7.768807 AGGTAGAGGAAGCACTACATTATAG 57.231 40.000 0.00 0.00 40.19 1.31
478 546 7.389884 CGTAGGTAGAGGAAGCACTACATTATA 59.610 40.741 0.00 0.00 40.19 0.98
479 547 6.207025 CGTAGGTAGAGGAAGCACTACATTAT 59.793 42.308 0.00 0.00 40.19 1.28
480 548 5.530171 CGTAGGTAGAGGAAGCACTACATTA 59.470 44.000 0.00 0.00 40.19 1.90
481 549 4.338682 CGTAGGTAGAGGAAGCACTACATT 59.661 45.833 0.00 0.00 40.19 2.71
482 550 3.884091 CGTAGGTAGAGGAAGCACTACAT 59.116 47.826 0.00 0.00 40.19 2.29
483 551 3.276857 CGTAGGTAGAGGAAGCACTACA 58.723 50.000 0.00 0.00 40.19 2.74
484 552 3.065095 CACGTAGGTAGAGGAAGCACTAC 59.935 52.174 0.00 0.00 38.44 2.73
485 553 3.276857 CACGTAGGTAGAGGAAGCACTA 58.723 50.000 0.00 0.00 0.00 2.74
486 554 2.093106 CACGTAGGTAGAGGAAGCACT 58.907 52.381 0.00 0.00 0.00 4.40
487 555 1.469423 GCACGTAGGTAGAGGAAGCAC 60.469 57.143 0.00 0.00 0.00 4.40
488 556 0.815734 GCACGTAGGTAGAGGAAGCA 59.184 55.000 0.00 0.00 0.00 3.91
489 557 1.104630 AGCACGTAGGTAGAGGAAGC 58.895 55.000 0.00 0.00 0.00 3.86
490 558 2.753452 TGAAGCACGTAGGTAGAGGAAG 59.247 50.000 0.00 0.00 0.00 3.46
491 559 2.799017 TGAAGCACGTAGGTAGAGGAA 58.201 47.619 0.00 0.00 0.00 3.36
492 560 2.490903 GTTGAAGCACGTAGGTAGAGGA 59.509 50.000 0.00 0.00 0.00 3.71
493 561 2.492484 AGTTGAAGCACGTAGGTAGAGG 59.508 50.000 0.00 0.00 0.00 3.69
494 562 3.851976 AGTTGAAGCACGTAGGTAGAG 57.148 47.619 0.00 0.00 0.00 2.43
495 563 4.038282 TCAAAGTTGAAGCACGTAGGTAGA 59.962 41.667 0.00 0.00 33.55 2.59
496 564 4.150098 GTCAAAGTTGAAGCACGTAGGTAG 59.850 45.833 0.00 0.00 39.21 3.18
497 565 4.053295 GTCAAAGTTGAAGCACGTAGGTA 58.947 43.478 0.00 0.00 39.21 3.08
498 566 2.870411 GTCAAAGTTGAAGCACGTAGGT 59.130 45.455 0.00 0.00 39.21 3.08
499 567 2.223377 GGTCAAAGTTGAAGCACGTAGG 59.777 50.000 0.00 0.00 39.21 3.18
500 568 2.096909 CGGTCAAAGTTGAAGCACGTAG 60.097 50.000 0.00 0.00 39.21 3.51
501 569 1.862201 CGGTCAAAGTTGAAGCACGTA 59.138 47.619 0.00 0.00 39.21 3.57
502 570 0.655733 CGGTCAAAGTTGAAGCACGT 59.344 50.000 0.00 0.00 39.21 4.49
503 571 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
504 572 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
505 573 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
506 574 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
515 583 8.938906 GGTCTTGATAGTTAAATTTACGGTCAA 58.061 33.333 0.00 6.02 0.00 3.18
516 584 7.276218 CGGTCTTGATAGTTAAATTTACGGTCA 59.724 37.037 0.00 0.00 0.00 4.02
517 585 7.489113 TCGGTCTTGATAGTTAAATTTACGGTC 59.511 37.037 0.00 0.00 0.00 4.79
518 586 7.322664 TCGGTCTTGATAGTTAAATTTACGGT 58.677 34.615 0.00 0.00 0.00 4.83
519 587 7.760131 TCGGTCTTGATAGTTAAATTTACGG 57.240 36.000 0.00 0.00 0.00 4.02
520 588 9.632969 CAATCGGTCTTGATAGTTAAATTTACG 57.367 33.333 0.00 0.00 0.00 3.18
521 589 9.434559 GCAATCGGTCTTGATAGTTAAATTTAC 57.565 33.333 0.00 0.00 0.00 2.01
522 590 8.332464 CGCAATCGGTCTTGATAGTTAAATTTA 58.668 33.333 0.00 0.00 0.00 1.40
523 591 7.065324 TCGCAATCGGTCTTGATAGTTAAATTT 59.935 33.333 0.00 0.00 36.13 1.82
524 592 6.537301 TCGCAATCGGTCTTGATAGTTAAATT 59.463 34.615 0.00 0.00 36.13 1.82
525 593 6.018994 GTCGCAATCGGTCTTGATAGTTAAAT 60.019 38.462 0.00 0.00 36.13 1.40
526 594 5.290158 GTCGCAATCGGTCTTGATAGTTAAA 59.710 40.000 0.00 0.00 36.13 1.52
527 595 4.802039 GTCGCAATCGGTCTTGATAGTTAA 59.198 41.667 0.00 0.00 36.13 2.01
528 596 4.357142 GTCGCAATCGGTCTTGATAGTTA 58.643 43.478 0.00 0.00 36.13 2.24
529 597 3.187700 GTCGCAATCGGTCTTGATAGTT 58.812 45.455 0.00 0.00 36.13 2.24
530 598 2.794981 CGTCGCAATCGGTCTTGATAGT 60.795 50.000 0.00 0.00 36.13 2.12
531 599 1.781429 CGTCGCAATCGGTCTTGATAG 59.219 52.381 0.00 0.00 36.13 2.08
532 600 1.535226 CCGTCGCAATCGGTCTTGATA 60.535 52.381 3.53 0.00 42.62 2.15
533 601 0.806102 CCGTCGCAATCGGTCTTGAT 60.806 55.000 3.53 0.00 42.62 2.57
534 602 1.445410 CCGTCGCAATCGGTCTTGA 60.445 57.895 3.53 0.00 42.62 3.02
535 603 2.452813 CCCGTCGCAATCGGTCTTG 61.453 63.158 9.66 0.00 45.63 3.02
536 604 2.125673 CCCGTCGCAATCGGTCTT 60.126 61.111 9.66 0.00 45.63 3.01
537 605 3.064987 CTCCCGTCGCAATCGGTCT 62.065 63.158 9.66 0.00 45.63 3.85
538 606 2.582498 CTCCCGTCGCAATCGGTC 60.582 66.667 9.66 0.00 45.63 4.79
539 607 4.814294 GCTCCCGTCGCAATCGGT 62.814 66.667 9.66 0.00 45.63 4.69
540 608 4.812476 TGCTCCCGTCGCAATCGG 62.812 66.667 4.55 4.55 46.49 4.18
541 609 1.906994 TTTTGCTCCCGTCGCAATCG 61.907 55.000 4.46 0.00 45.67 3.34
542 610 0.179189 CTTTTGCTCCCGTCGCAATC 60.179 55.000 4.46 0.00 45.67 2.67
543 611 0.889186 ACTTTTGCTCCCGTCGCAAT 60.889 50.000 4.46 0.00 45.67 3.56
544 612 1.098712 AACTTTTGCTCCCGTCGCAA 61.099 50.000 0.00 0.00 44.83 4.85
545 613 0.249953 TAACTTTTGCTCCCGTCGCA 60.250 50.000 0.00 0.00 35.22 5.10
546 614 1.084289 ATAACTTTTGCTCCCGTCGC 58.916 50.000 0.00 0.00 0.00 5.19
547 615 4.116961 TGATATAACTTTTGCTCCCGTCG 58.883 43.478 0.00 0.00 0.00 5.12
548 616 5.006746 CACTGATATAACTTTTGCTCCCGTC 59.993 44.000 0.00 0.00 0.00 4.79
549 617 4.876107 CACTGATATAACTTTTGCTCCCGT 59.124 41.667 0.00 0.00 0.00 5.28
550 618 5.116180 TCACTGATATAACTTTTGCTCCCG 58.884 41.667 0.00 0.00 0.00 5.14
551 619 7.573968 AATCACTGATATAACTTTTGCTCCC 57.426 36.000 0.00 0.00 0.00 4.30
552 620 9.294030 CAAAATCACTGATATAACTTTTGCTCC 57.706 33.333 0.00 0.00 0.00 4.70
553 621 9.846248 ACAAAATCACTGATATAACTTTTGCTC 57.154 29.630 10.94 0.00 36.21 4.26
566 634 9.003658 ACTTCTTTCGAATACAAAATCACTGAT 57.996 29.630 0.00 0.00 0.00 2.90
567 635 8.378172 ACTTCTTTCGAATACAAAATCACTGA 57.622 30.769 0.00 0.00 0.00 3.41
568 636 9.450807 AAACTTCTTTCGAATACAAAATCACTG 57.549 29.630 0.00 0.00 0.00 3.66
592 660 9.628746 GCGGGAGAAAAGTTACATAATTAAAAA 57.371 29.630 0.00 0.00 0.00 1.94
593 661 8.245491 GGCGGGAGAAAAGTTACATAATTAAAA 58.755 33.333 0.00 0.00 0.00 1.52
594 662 7.414319 CGGCGGGAGAAAAGTTACATAATTAAA 60.414 37.037 0.00 0.00 0.00 1.52
595 663 6.037391 CGGCGGGAGAAAAGTTACATAATTAA 59.963 38.462 0.00 0.00 0.00 1.40
596 664 5.524646 CGGCGGGAGAAAAGTTACATAATTA 59.475 40.000 0.00 0.00 0.00 1.40
597 665 4.334481 CGGCGGGAGAAAAGTTACATAATT 59.666 41.667 0.00 0.00 0.00 1.40
598 666 3.875134 CGGCGGGAGAAAAGTTACATAAT 59.125 43.478 0.00 0.00 0.00 1.28
599 667 3.264104 CGGCGGGAGAAAAGTTACATAA 58.736 45.455 0.00 0.00 0.00 1.90
600 668 2.896168 CGGCGGGAGAAAAGTTACATA 58.104 47.619 0.00 0.00 0.00 2.29
601 669 1.734163 CGGCGGGAGAAAAGTTACAT 58.266 50.000 0.00 0.00 0.00 2.29
602 670 0.952010 GCGGCGGGAGAAAAGTTACA 60.952 55.000 9.78 0.00 0.00 2.41
603 671 0.952010 TGCGGCGGGAGAAAAGTTAC 60.952 55.000 9.78 0.00 0.00 2.50
604 672 0.672401 CTGCGGCGGGAGAAAAGTTA 60.672 55.000 9.78 0.00 32.53 2.24
605 673 1.966451 CTGCGGCGGGAGAAAAGTT 60.966 57.895 9.78 0.00 32.53 2.66
606 674 2.358737 CTGCGGCGGGAGAAAAGT 60.359 61.111 9.78 0.00 32.53 2.66
607 675 2.358737 ACTGCGGCGGGAGAAAAG 60.359 61.111 19.55 0.00 35.29 2.27
608 676 2.358247 GACTGCGGCGGGAGAAAA 60.358 61.111 19.55 0.00 35.29 2.29
609 677 4.735132 CGACTGCGGCGGGAGAAA 62.735 66.667 19.55 0.00 35.29 2.52
619 687 2.870161 CGAACGAGACCGACTGCG 60.870 66.667 0.00 0.00 39.50 5.18
620 688 0.110056 TAACGAACGAGACCGACTGC 60.110 55.000 0.14 0.00 39.50 4.40
621 689 2.320805 TTAACGAACGAGACCGACTG 57.679 50.000 0.14 0.00 39.50 3.51
622 690 3.565905 ATTTAACGAACGAGACCGACT 57.434 42.857 0.14 0.00 39.50 4.18
623 691 4.635961 AAATTTAACGAACGAGACCGAC 57.364 40.909 0.14 0.00 39.50 4.79
624 692 6.092092 TCATAAATTTAACGAACGAGACCGA 58.908 36.000 1.21 0.00 39.50 4.69
625 693 6.321873 TCATAAATTTAACGAACGAGACCG 57.678 37.500 1.21 0.00 42.50 4.79
626 694 7.902032 TGATCATAAATTTAACGAACGAGACC 58.098 34.615 1.21 0.00 0.00 3.85
627 695 9.749490 TTTGATCATAAATTTAACGAACGAGAC 57.251 29.630 1.21 0.00 0.00 3.36
628 696 9.967245 CTTTGATCATAAATTTAACGAACGAGA 57.033 29.630 1.21 0.00 0.00 4.04
629 697 9.755064 ACTTTGATCATAAATTTAACGAACGAG 57.245 29.630 1.21 6.14 0.00 4.18
634 702 9.749490 GTCGAACTTTGATCATAAATTTAACGA 57.251 29.630 1.21 2.79 0.00 3.85
635 703 8.995906 GGTCGAACTTTGATCATAAATTTAACG 58.004 33.333 1.21 0.00 0.00 3.18
638 706 8.600625 CGAGGTCGAACTTTGATCATAAATTTA 58.399 33.333 3.47 0.00 43.02 1.40
639 707 7.333423 TCGAGGTCGAACTTTGATCATAAATTT 59.667 33.333 3.47 0.00 46.30 1.82
640 708 6.816640 TCGAGGTCGAACTTTGATCATAAATT 59.183 34.615 3.47 0.00 46.30 1.82
641 709 6.338146 TCGAGGTCGAACTTTGATCATAAAT 58.662 36.000 3.47 0.00 46.30 1.40
642 710 5.716094 TCGAGGTCGAACTTTGATCATAAA 58.284 37.500 3.47 0.00 46.30 1.40
643 711 5.319140 TCGAGGTCGAACTTTGATCATAA 57.681 39.130 3.47 0.00 46.30 1.90
644 712 4.976224 TCGAGGTCGAACTTTGATCATA 57.024 40.909 3.47 0.00 46.30 2.15
645 713 3.868757 TCGAGGTCGAACTTTGATCAT 57.131 42.857 3.47 0.00 46.30 2.45
657 725 1.372499 TCCGTGCTTTTCGAGGTCG 60.372 57.895 0.00 0.00 41.45 4.79
658 726 1.615107 CGTCCGTGCTTTTCGAGGTC 61.615 60.000 0.00 0.00 0.00 3.85
659 727 1.663702 CGTCCGTGCTTTTCGAGGT 60.664 57.895 0.00 0.00 0.00 3.85
660 728 3.011760 GCGTCCGTGCTTTTCGAGG 62.012 63.158 0.00 0.00 0.00 4.63
661 729 2.307309 TGCGTCCGTGCTTTTCGAG 61.307 57.895 0.00 0.00 35.36 4.04
662 730 2.279584 TGCGTCCGTGCTTTTCGA 60.280 55.556 0.00 0.00 35.36 3.71
663 731 1.279527 TAGTGCGTCCGTGCTTTTCG 61.280 55.000 0.00 0.00 35.36 3.46
664 732 1.076332 ATAGTGCGTCCGTGCTTTTC 58.924 50.000 0.00 0.00 35.36 2.29
665 733 2.373540 TATAGTGCGTCCGTGCTTTT 57.626 45.000 0.00 0.00 35.36 2.27
666 734 2.596904 ATATAGTGCGTCCGTGCTTT 57.403 45.000 0.00 0.00 35.36 3.51
667 735 2.596904 AATATAGTGCGTCCGTGCTT 57.403 45.000 0.00 0.00 35.36 3.91
668 736 2.596904 AAATATAGTGCGTCCGTGCT 57.403 45.000 0.00 0.00 35.36 4.40
669 737 4.046462 TCTAAAATATAGTGCGTCCGTGC 58.954 43.478 0.00 0.00 0.00 5.34
670 738 6.346598 CCATTCTAAAATATAGTGCGTCCGTG 60.347 42.308 0.00 0.00 0.00 4.94
671 739 5.694910 CCATTCTAAAATATAGTGCGTCCGT 59.305 40.000 0.00 0.00 0.00 4.69
672 740 5.924254 TCCATTCTAAAATATAGTGCGTCCG 59.076 40.000 0.00 0.00 0.00 4.79
673 741 6.369065 CCTCCATTCTAAAATATAGTGCGTCC 59.631 42.308 0.00 0.00 0.00 4.79
674 742 6.369065 CCCTCCATTCTAAAATATAGTGCGTC 59.631 42.308 0.00 0.00 0.00 5.19
675 743 6.042781 TCCCTCCATTCTAAAATATAGTGCGT 59.957 38.462 0.00 0.00 0.00 5.24
676 744 6.464222 TCCCTCCATTCTAAAATATAGTGCG 58.536 40.000 0.00 0.00 0.00 5.34
677 745 7.454225 ACTCCCTCCATTCTAAAATATAGTGC 58.546 38.462 0.00 0.00 0.00 4.40
679 747 9.900112 ACTACTCCCTCCATTCTAAAATATAGT 57.100 33.333 0.00 0.00 0.00 2.12
684 752 9.453830 AGAATACTACTCCCTCCATTCTAAAAT 57.546 33.333 0.00 0.00 32.46 1.82
685 753 8.855804 AGAATACTACTCCCTCCATTCTAAAA 57.144 34.615 0.00 0.00 32.46 1.52
686 754 8.065627 TGAGAATACTACTCCCTCCATTCTAAA 58.934 37.037 0.00 0.00 33.93 1.85
687 755 7.592736 TGAGAATACTACTCCCTCCATTCTAA 58.407 38.462 0.00 0.00 33.93 2.10
688 756 7.162973 TGAGAATACTACTCCCTCCATTCTA 57.837 40.000 0.00 0.00 33.93 2.10
689 757 6.031964 TGAGAATACTACTCCCTCCATTCT 57.968 41.667 0.00 0.00 35.89 2.40
690 758 6.732896 TTGAGAATACTACTCCCTCCATTC 57.267 41.667 0.00 0.00 33.95 2.67
691 759 7.510675 TTTTGAGAATACTACTCCCTCCATT 57.489 36.000 0.00 0.00 33.95 3.16
692 760 7.698163 ATTTTGAGAATACTACTCCCTCCAT 57.302 36.000 0.00 0.00 33.95 3.41
693 761 7.844779 AGTATTTTGAGAATACTACTCCCTCCA 59.155 37.037 6.60 0.00 40.55 3.86
694 762 8.252624 AGTATTTTGAGAATACTACTCCCTCC 57.747 38.462 6.60 0.00 40.55 4.30
717 785 9.944376 TGTTTGATAGCTCTACATTTTCTAAGT 57.056 29.630 0.00 0.00 0.00 2.24
719 787 9.383519 CCTGTTTGATAGCTCTACATTTTCTAA 57.616 33.333 0.00 0.00 0.00 2.10
720 788 7.987458 CCCTGTTTGATAGCTCTACATTTTCTA 59.013 37.037 0.00 0.00 0.00 2.10
721 789 6.825721 CCCTGTTTGATAGCTCTACATTTTCT 59.174 38.462 0.00 0.00 0.00 2.52
722 790 6.823689 TCCCTGTTTGATAGCTCTACATTTTC 59.176 38.462 0.00 0.00 0.00 2.29
723 791 6.599638 GTCCCTGTTTGATAGCTCTACATTTT 59.400 38.462 0.00 0.00 0.00 1.82
724 792 6.116126 GTCCCTGTTTGATAGCTCTACATTT 58.884 40.000 0.00 0.00 0.00 2.32
725 793 5.675538 GTCCCTGTTTGATAGCTCTACATT 58.324 41.667 0.00 0.00 0.00 2.71
726 794 4.202161 CGTCCCTGTTTGATAGCTCTACAT 60.202 45.833 0.00 0.00 0.00 2.29
727 795 3.130516 CGTCCCTGTTTGATAGCTCTACA 59.869 47.826 0.00 0.00 0.00 2.74
728 796 3.380637 TCGTCCCTGTTTGATAGCTCTAC 59.619 47.826 0.00 0.00 0.00 2.59
729 797 3.380637 GTCGTCCCTGTTTGATAGCTCTA 59.619 47.826 0.00 0.00 0.00 2.43
730 798 2.166664 GTCGTCCCTGTTTGATAGCTCT 59.833 50.000 0.00 0.00 0.00 4.09
731 799 2.094182 TGTCGTCCCTGTTTGATAGCTC 60.094 50.000 0.00 0.00 0.00 4.09
732 800 1.899814 TGTCGTCCCTGTTTGATAGCT 59.100 47.619 0.00 0.00 0.00 3.32
733 801 2.380084 TGTCGTCCCTGTTTGATAGC 57.620 50.000 0.00 0.00 0.00 2.97
734 802 7.926555 AGTATATTTGTCGTCCCTGTTTGATAG 59.073 37.037 0.00 0.00 0.00 2.08
735 803 7.788026 AGTATATTTGTCGTCCCTGTTTGATA 58.212 34.615 0.00 0.00 0.00 2.15
736 804 6.650120 AGTATATTTGTCGTCCCTGTTTGAT 58.350 36.000 0.00 0.00 0.00 2.57
737 805 6.045072 AGTATATTTGTCGTCCCTGTTTGA 57.955 37.500 0.00 0.00 0.00 2.69
738 806 6.594159 AGAAGTATATTTGTCGTCCCTGTTTG 59.406 38.462 0.00 0.00 0.00 2.93
739 807 6.708285 AGAAGTATATTTGTCGTCCCTGTTT 58.292 36.000 0.00 0.00 0.00 2.83
740 808 6.295719 AGAAGTATATTTGTCGTCCCTGTT 57.704 37.500 0.00 0.00 0.00 3.16
741 809 5.163437 GGAGAAGTATATTTGTCGTCCCTGT 60.163 44.000 0.00 0.00 0.00 4.00
742 810 5.290386 GGAGAAGTATATTTGTCGTCCCTG 58.710 45.833 0.00 0.00 0.00 4.45
743 811 4.344390 GGGAGAAGTATATTTGTCGTCCCT 59.656 45.833 0.00 0.00 38.50 4.20
744 812 4.344390 AGGGAGAAGTATATTTGTCGTCCC 59.656 45.833 0.00 0.00 41.38 4.46
745 813 5.532664 AGGGAGAAGTATATTTGTCGTCC 57.467 43.478 0.00 0.00 0.00 4.79
746 814 6.916932 GTGTAGGGAGAAGTATATTTGTCGTC 59.083 42.308 0.00 0.00 0.00 4.20
747 815 6.606395 AGTGTAGGGAGAAGTATATTTGTCGT 59.394 38.462 0.00 0.00 0.00 4.34
748 816 7.040473 AGTGTAGGGAGAAGTATATTTGTCG 57.960 40.000 0.00 0.00 0.00 4.35
753 821 8.430431 GCCTTTAAGTGTAGGGAGAAGTATATT 58.570 37.037 0.00 0.00 31.95 1.28
754 822 7.016366 GGCCTTTAAGTGTAGGGAGAAGTATAT 59.984 40.741 0.00 0.00 31.95 0.86
755 823 6.325804 GGCCTTTAAGTGTAGGGAGAAGTATA 59.674 42.308 0.00 0.00 31.95 1.47
756 824 5.130643 GGCCTTTAAGTGTAGGGAGAAGTAT 59.869 44.000 0.00 0.00 31.95 2.12
757 825 4.468868 GGCCTTTAAGTGTAGGGAGAAGTA 59.531 45.833 0.00 0.00 31.95 2.24
758 826 3.263681 GGCCTTTAAGTGTAGGGAGAAGT 59.736 47.826 0.00 0.00 31.95 3.01
759 827 3.263425 TGGCCTTTAAGTGTAGGGAGAAG 59.737 47.826 3.32 0.00 31.95 2.85
760 828 3.253220 TGGCCTTTAAGTGTAGGGAGAA 58.747 45.455 3.32 0.00 31.95 2.87
761 829 2.838202 CTGGCCTTTAAGTGTAGGGAGA 59.162 50.000 3.32 0.00 31.95 3.71
762 830 2.572104 ACTGGCCTTTAAGTGTAGGGAG 59.428 50.000 3.32 0.00 31.95 4.30
763 831 2.627933 ACTGGCCTTTAAGTGTAGGGA 58.372 47.619 3.32 0.00 31.95 4.20
764 832 3.009143 AGAACTGGCCTTTAAGTGTAGGG 59.991 47.826 3.32 0.00 31.95 3.53
765 833 4.287766 AGAACTGGCCTTTAAGTGTAGG 57.712 45.455 3.32 0.00 34.54 3.18
766 834 5.998363 AGAAAGAACTGGCCTTTAAGTGTAG 59.002 40.000 3.32 0.00 34.33 2.74
767 835 5.937111 AGAAAGAACTGGCCTTTAAGTGTA 58.063 37.500 3.32 0.00 34.33 2.90
768 836 4.793201 AGAAAGAACTGGCCTTTAAGTGT 58.207 39.130 3.32 0.00 34.33 3.55
769 837 5.106515 GCTAGAAAGAACTGGCCTTTAAGTG 60.107 44.000 3.32 0.00 38.20 3.16
874 943 2.052782 ACGTTCAGGCCAGTTCTTTT 57.947 45.000 5.01 0.00 0.00 2.27
936 1007 1.533033 GGGGTGGGAGTTTGGGTTG 60.533 63.158 0.00 0.00 0.00 3.77
1154 1225 2.615773 GGGAGGGAGAGTAGGGGG 59.384 72.222 0.00 0.00 0.00 5.40
1155 1226 2.615773 GGGGAGGGAGAGTAGGGG 59.384 72.222 0.00 0.00 0.00 4.79
1158 1229 0.186386 ATGTCGGGGAGGGAGAGTAG 59.814 60.000 0.00 0.00 0.00 2.57
1574 1645 0.528684 GAATCTTGAGCGACTCCCCG 60.529 60.000 4.73 0.00 0.00 5.73
1609 1680 1.819928 AGCACACAAATGTATCGGCA 58.180 45.000 0.00 0.00 36.72 5.69
1698 1769 7.606349 TGATAAACTGATATAGCTAGCACCAG 58.394 38.462 18.83 16.65 0.00 4.00
1706 1777 8.915057 ACAATGCTTGATAAACTGATATAGCT 57.085 30.769 0.00 0.00 0.00 3.32
1707 1778 9.956720 AAACAATGCTTGATAAACTGATATAGC 57.043 29.630 3.37 0.00 0.00 2.97
1713 1784 9.677567 GTTTCTAAACAATGCTTGATAAACTGA 57.322 29.630 0.74 0.00 38.74 3.41
1714 1785 8.915654 GGTTTCTAAACAATGCTTGATAAACTG 58.084 33.333 7.80 0.00 40.63 3.16
1715 1786 8.860088 AGGTTTCTAAACAATGCTTGATAAACT 58.140 29.630 7.80 0.00 40.63 2.66
1716 1787 9.476202 AAGGTTTCTAAACAATGCTTGATAAAC 57.524 29.630 7.80 0.00 40.63 2.01
1743 1814 9.326489 ACTACTTGATTCCTATGATGCCTATAA 57.674 33.333 0.00 0.00 0.00 0.98
1799 1870 5.046735 TGGTAACCAACAATTTCATCCCATG 60.047 40.000 0.00 0.00 0.00 3.66
1834 1905 6.259608 CAGCAATCGATTTCTAGGTTTCATCT 59.740 38.462 10.02 0.00 0.00 2.90
1837 1908 5.487433 TCAGCAATCGATTTCTAGGTTTCA 58.513 37.500 10.02 0.00 0.00 2.69
1872 1943 2.263077 GAGTCACGATAACTGCACCAG 58.737 52.381 0.00 0.00 37.52 4.00
1983 2057 7.495279 AGTCAATGATAAAAACAAGCTGCAAAA 59.505 29.630 1.02 0.00 0.00 2.44
1984 2058 6.985645 AGTCAATGATAAAAACAAGCTGCAAA 59.014 30.769 1.02 0.00 0.00 3.68
2026 2100 0.889994 GATGTCAACCATGCAGCCAA 59.110 50.000 0.00 0.00 32.56 4.52
2085 2160 7.772332 ATTGTCCTGAAGCTACTAAATTACG 57.228 36.000 0.00 0.00 0.00 3.18
2160 2235 7.790823 TTGTCATCCACACATTACATATCAG 57.209 36.000 0.00 0.00 33.41 2.90
2212 2294 6.093495 CCAACGTTGTGAATTGTGGAGTATAT 59.907 38.462 25.63 0.00 0.00 0.86
2362 2444 7.607250 AGAGAGCATGTGGTAATAGCTATAAC 58.393 38.462 6.68 4.47 35.36 1.89
2487 2751 3.259123 GGTTGTACTCCCTCCGTAAAGAA 59.741 47.826 0.00 0.00 0.00 2.52
2489 2753 2.830321 AGGTTGTACTCCCTCCGTAAAG 59.170 50.000 0.00 0.00 0.00 1.85
2490 2754 2.893424 AGGTTGTACTCCCTCCGTAAA 58.107 47.619 0.00 0.00 0.00 2.01
2491 2755 2.610438 AGGTTGTACTCCCTCCGTAA 57.390 50.000 0.00 0.00 0.00 3.18
2686 3083 2.603953 GTAGTGGAAACAGAGGCGTAC 58.396 52.381 0.00 0.00 44.46 3.67
2688 3085 0.320697 GGTAGTGGAAACAGAGGCGT 59.679 55.000 0.00 0.00 44.46 5.68
3156 3554 8.932791 AGAAGTATTTGAGTATAAACACAACGG 58.067 33.333 0.00 0.00 31.74 4.44
3192 3590 6.790825 GCAGTTACAAAGAGTTTAAAGTAGCG 59.209 38.462 0.00 0.00 0.00 4.26
3220 3618 7.498570 ACAGTTTCGTAAAATGGGTACAGTTAA 59.501 33.333 10.78 0.00 40.51 2.01
3233 3632 7.887996 ATCATAACCGTACAGTTTCGTAAAA 57.112 32.000 0.00 0.00 0.00 1.52
3277 3676 3.064207 GCTCGTTGTGTGTTCCTTATCA 58.936 45.455 0.00 0.00 0.00 2.15
3389 3794 6.599244 CCTCCTTGCAGATATGTAAAGTCAAA 59.401 38.462 0.00 0.00 0.00 2.69
3711 4117 2.643551 AGCCCAATAACATCAACTCCG 58.356 47.619 0.00 0.00 0.00 4.63
3798 4204 3.685139 AATAGATATGCTGGGTCCACG 57.315 47.619 0.00 0.00 0.00 4.94
4064 4471 8.574251 AGTATAAATTTGTAGACACCAATGCA 57.426 30.769 0.00 0.00 0.00 3.96
4136 4544 3.214023 TGGTGAATTGGCCACACAA 57.786 47.368 22.37 11.85 36.31 3.33
4144 4552 1.955778 TCAAGCTGTGTGGTGAATTGG 59.044 47.619 0.00 0.00 0.00 3.16
4261 4669 4.424061 TGAACGAATGCTTCAGAAATGG 57.576 40.909 0.00 0.00 0.00 3.16
4389 4798 2.694628 TGCCAAAAGAGAATGCAACACT 59.305 40.909 0.00 0.00 0.00 3.55
4437 4846 1.523758 AAGGACCTAAACTTGCAGCG 58.476 50.000 0.00 0.00 0.00 5.18
4445 4854 9.117183 CATAATACAAACCCTAAGGACCTAAAC 57.883 37.037 0.00 0.00 36.73 2.01
4454 4863 9.490379 GTCCTATGACATAATACAAACCCTAAG 57.510 37.037 0.00 0.00 41.37 2.18
4746 5155 1.754803 CTGGCCATCATCAAGCAACAT 59.245 47.619 5.51 0.00 0.00 2.71
4797 5207 4.116747 AGAAGGTATTGAGCTGAGAACG 57.883 45.455 0.00 0.00 32.39 3.95
4849 5266 2.613223 GGTGTCTCTACAAGGAACAGCC 60.613 54.545 0.00 0.00 37.36 4.85
4908 5325 9.761504 CTGAGTAGATGAATGACTGAAATACAT 57.238 33.333 0.00 0.00 0.00 2.29
5009 5426 4.873827 TGATAACCGATGCAAGGAACTAAC 59.126 41.667 17.19 6.18 38.49 2.34
5024 5441 5.808540 TCGTTCTAAACTGGAATGATAACCG 59.191 40.000 0.00 0.00 34.87 4.44
5107 5524 3.733077 GCACCTAAAACATGATGCTCAGC 60.733 47.826 0.00 0.00 0.00 4.26
5224 5641 4.590647 TCCCACTGCAACAAATAATTTCCA 59.409 37.500 0.00 0.00 0.00 3.53
5279 5699 8.394877 CGAGCAATACAGAATATGTTAAAACCA 58.605 33.333 0.00 0.00 39.96 3.67
5355 5779 2.232756 TTTTCTTTTTGAAGGGCGGC 57.767 45.000 0.00 0.00 35.89 6.53
5401 5825 1.353103 CCTCAATTCGATGCCGTGC 59.647 57.895 0.00 0.00 37.05 5.34
5403 5827 0.462047 GGACCTCAATTCGATGCCGT 60.462 55.000 0.00 0.00 37.05 5.68
5423 5847 4.580580 AGCAAGTGGAGTTAAGAAAACAGG 59.419 41.667 0.00 0.00 0.00 4.00
5502 5926 3.899052 AGGCACCAGTTTATAAGCGTA 57.101 42.857 0.00 0.00 0.00 4.42
5563 6006 3.474600 ACTCAGCACCATCATCAATAGC 58.525 45.455 0.00 0.00 0.00 2.97
5597 6040 4.051922 GTCAAGACAGAAGAAAAGCGAGA 58.948 43.478 0.00 0.00 0.00 4.04
5598 6041 3.121194 CGTCAAGACAGAAGAAAAGCGAG 60.121 47.826 0.72 0.00 0.00 5.03
5599 6042 2.794910 CGTCAAGACAGAAGAAAAGCGA 59.205 45.455 0.72 0.00 0.00 4.93
5617 6060 5.116983 CCACATTTTACATTTCAACTGCGTC 59.883 40.000 0.00 0.00 0.00 5.19
5662 6110 6.821160 TCACAAACTTCAGACAACATACAGAA 59.179 34.615 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.