Multiple sequence alignment - TraesCS3A01G224600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G224600 chr3A 100.000 4118 0 0 1 4118 420739043 420743160 0.000000e+00 7605.0
1 TraesCS3A01G224600 chr3A 91.971 137 9 2 323 458 12748038 12747903 1.510000e-44 191.0
2 TraesCS3A01G224600 chr3A 93.651 126 8 0 327 452 169855801 169855926 5.430000e-44 189.0
3 TraesCS3A01G224600 chr3A 91.791 134 10 1 329 462 621323865 621323733 7.030000e-43 185.0
4 TraesCS3A01G224600 chr3D 97.388 3599 74 10 45 3638 311669213 311665630 0.000000e+00 6107.0
5 TraesCS3A01G224600 chr3D 94.611 167 7 2 3764 3929 311665603 311665438 1.470000e-64 257.0
6 TraesCS3A01G224600 chr3D 95.935 123 4 1 3938 4060 311665400 311665279 9.030000e-47 198.0
7 TraesCS3A01G224600 chr3D 91.791 134 9 2 320 452 172356570 172356702 7.030000e-43 185.0
8 TraesCS3A01G224600 chr3D 97.674 43 0 1 4074 4116 311665294 311665253 5.710000e-09 73.1
9 TraesCS3A01G224600 chr3D 96.970 33 1 0 3460 3492 311665405 311665373 5.750000e-04 56.5
10 TraesCS3A01G224600 chr3B 95.928 3487 98 18 2 3477 409543615 409547068 0.000000e+00 5613.0
11 TraesCS3A01G224600 chr6A 95.200 125 6 0 328 452 352665670 352665794 9.030000e-47 198.0
12 TraesCS3A01G224600 chr6A 94.737 114 5 1 3653 3765 13437171 13437284 4.230000e-40 176.0
13 TraesCS3A01G224600 chr6A 91.935 124 7 3 3656 3777 477910878 477910756 1.970000e-38 171.0
14 TraesCS3A01G224600 chr7A 94.400 125 7 0 328 452 498590258 498590382 4.200000e-45 193.0
15 TraesCS3A01G224600 chr7A 89.542 153 13 3 309 459 627236795 627236946 1.510000e-44 191.0
16 TraesCS3A01G224600 chr7A 96.296 108 4 0 3656 3763 473023717 473023824 1.180000e-40 178.0
17 TraesCS3A01G224600 chr7A 92.562 121 7 2 3656 3774 27059460 27059580 5.470000e-39 172.0
18 TraesCS3A01G224600 chr5A 96.552 116 3 1 3651 3765 574780147 574780262 1.510000e-44 191.0
19 TraesCS3A01G224600 chr5A 96.296 108 4 0 3656 3763 601257415 601257308 1.180000e-40 178.0
20 TraesCS3A01G224600 chr5A 92.623 122 6 3 3646 3766 663713639 663713758 5.470000e-39 172.0
21 TraesCS3A01G224600 chr5A 86.726 113 11 3 3547 3657 354534423 354534313 5.590000e-24 122.0
22 TraesCS3A01G224600 chr4A 96.262 107 4 0 3656 3762 315236350 315236456 4.230000e-40 176.0
23 TraesCS3A01G224600 chr2A 90.000 130 10 3 3655 3781 552488386 552488515 9.160000e-37 165.0
24 TraesCS3A01G224600 chr5D 86.916 107 10 3 3547 3651 265970515 265970619 2.600000e-22 117.0
25 TraesCS3A01G224600 chr2B 90.000 70 3 3 3550 3617 73560326 73560393 2.040000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G224600 chr3A 420739043 420743160 4117 False 7605.00 7605 100.0000 1 4118 1 chr3A.!!$F2 4117
1 TraesCS3A01G224600 chr3D 311665253 311669213 3960 True 1338.32 6107 96.5156 45 4116 5 chr3D.!!$R1 4071
2 TraesCS3A01G224600 chr3B 409543615 409547068 3453 False 5613.00 5613 95.9280 2 3477 1 chr3B.!!$F1 3475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 1.609208 TCCTGTTCAGAGCAAAAGGC 58.391 50.0 1.00 0.0 45.30 4.35 F
463 465 4.220163 GGGACGGAGGTACTAATATCTTGG 59.780 50.0 0.00 0.0 41.55 3.61 F
1804 1810 1.016653 GTGAAGAGCTCGGTTGCCTC 61.017 60.0 8.37 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1121 1124 4.058817 GAGAAGTGTTCACCGAGTTGATT 58.941 43.478 0.0 0.0 0.0 2.57 R
2228 2234 1.547372 GCACATTCTGGAAACTGGCAT 59.453 47.619 0.0 0.0 0.0 4.40 R
3790 4106 0.111639 TTAGGGGAACAAGGTGGCAC 59.888 55.000 9.7 9.7 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.466497 TCTTATGAAAGAATTAACAGGAAGCAT 57.534 29.630 0.00 0.00 38.81 3.79
53 54 1.609208 TCCTGTTCAGAGCAAAAGGC 58.391 50.000 1.00 0.00 45.30 4.35
342 344 4.472690 AATCTTATACTCCCTCCGTCCT 57.527 45.455 0.00 0.00 0.00 3.85
430 432 8.788806 ACATCCGTATCTAGACAAATCTAAGAG 58.211 37.037 0.00 0.00 36.98 2.85
463 465 4.220163 GGGACGGAGGTACTAATATCTTGG 59.780 50.000 0.00 0.00 41.55 3.61
1121 1124 2.580322 TGGCCTTGGATTTGGTGATAGA 59.420 45.455 3.32 0.00 0.00 1.98
1160 1163 6.183361 ACACTTCTCATTACCAGAGTTCAGTT 60.183 38.462 0.00 0.00 34.73 3.16
1161 1164 6.146837 CACTTCTCATTACCAGAGTTCAGTTG 59.853 42.308 0.00 0.00 34.73 3.16
1743 1749 2.867109 ACCCAGACAAGAGAATGGTG 57.133 50.000 0.00 0.00 0.00 4.17
1748 1754 4.326826 CCAGACAAGAGAATGGTGCTTTA 58.673 43.478 0.00 0.00 0.00 1.85
1749 1755 4.394300 CCAGACAAGAGAATGGTGCTTTAG 59.606 45.833 0.00 0.00 0.00 1.85
1804 1810 1.016653 GTGAAGAGCTCGGTTGCCTC 61.017 60.000 8.37 0.00 0.00 4.70
2447 2453 1.868997 GCAGTACTGTGTTGCGCAT 59.131 52.632 23.44 0.00 0.00 4.73
2474 2480 1.300481 GGAAGAGGTGCGCTATTTCC 58.700 55.000 9.73 11.04 0.00 3.13
2789 2795 1.434555 TCGCCACAGATGTTAAACCG 58.565 50.000 0.00 0.00 0.00 4.44
2802 2808 3.244146 TGTTAAACCGGACGAGATGGAAA 60.244 43.478 9.46 0.00 0.00 3.13
2810 2816 0.729116 ACGAGATGGAAATTGCTGCG 59.271 50.000 0.00 0.00 0.00 5.18
3055 3061 0.321564 CTGTGGCGGGATGAAGTTCA 60.322 55.000 8.27 8.27 0.00 3.18
3250 3263 3.056821 TCACAGTTCCTACTTGGATGTCG 60.057 47.826 0.00 0.00 45.68 4.35
3341 3354 2.759535 GGTACTGGGTAGAAGTCTGTCC 59.240 54.545 0.00 0.00 0.00 4.02
3349 3362 5.839063 TGGGTAGAAGTCTGTCCTATATTGG 59.161 44.000 0.00 0.00 0.00 3.16
3457 3470 7.307811 CGTCAAGAGATGAATGTTGATGCATAT 60.308 37.037 0.00 0.00 40.50 1.78
3500 3816 6.722301 TCTAGATTTAGTACCATGAACGTCG 58.278 40.000 0.00 0.00 0.00 5.12
3523 3839 5.464389 CGAGAGATGAATGTTGATGCACATA 59.536 40.000 0.00 0.00 36.30 2.29
3541 3857 6.872547 TGCACATATCATTGCTAGAATCTCTC 59.127 38.462 0.00 0.00 39.62 3.20
3542 3858 7.098477 GCACATATCATTGCTAGAATCTCTCT 58.902 38.462 0.00 0.00 38.28 3.10
3567 3883 3.518634 TTTTTCTGAAACCTGTGGCAC 57.481 42.857 11.55 11.55 0.00 5.01
3568 3884 2.136298 TTTCTGAAACCTGTGGCACA 57.864 45.000 20.76 20.76 0.00 4.57
3586 3902 7.701539 TGGCACACTATTCAAATCAAATACT 57.298 32.000 0.00 0.00 0.00 2.12
3587 3903 8.121305 TGGCACACTATTCAAATCAAATACTT 57.879 30.769 0.00 0.00 0.00 2.24
3588 3904 8.028354 TGGCACACTATTCAAATCAAATACTTG 58.972 33.333 0.00 0.00 0.00 3.16
3589 3905 8.028938 GGCACACTATTCAAATCAAATACTTGT 58.971 33.333 0.00 0.00 33.94 3.16
3590 3906 9.410556 GCACACTATTCAAATCAAATACTTGTT 57.589 29.630 0.00 0.00 33.94 2.83
3611 3927 8.500753 TTGTTACATCACTAACAAGTTCAACT 57.499 30.769 1.29 0.00 40.24 3.16
3612 3928 9.602568 TTGTTACATCACTAACAAGTTCAACTA 57.397 29.630 0.00 0.00 40.24 2.24
3613 3929 9.256477 TGTTACATCACTAACAAGTTCAACTAG 57.744 33.333 0.00 0.00 34.38 2.57
3614 3930 8.709646 GTTACATCACTAACAAGTTCAACTAGG 58.290 37.037 0.00 0.00 0.00 3.02
3615 3931 7.062749 ACATCACTAACAAGTTCAACTAGGA 57.937 36.000 0.00 0.00 0.00 2.94
3616 3932 7.680730 ACATCACTAACAAGTTCAACTAGGAT 58.319 34.615 0.00 0.00 0.00 3.24
3617 3933 8.812972 ACATCACTAACAAGTTCAACTAGGATA 58.187 33.333 0.00 0.00 0.00 2.59
3618 3934 9.653287 CATCACTAACAAGTTCAACTAGGATAA 57.347 33.333 0.00 0.00 0.00 1.75
3620 3936 9.871238 TCACTAACAAGTTCAACTAGGATAATC 57.129 33.333 0.00 0.00 0.00 1.75
3621 3937 9.877178 CACTAACAAGTTCAACTAGGATAATCT 57.123 33.333 0.00 0.00 0.00 2.40
3624 3940 8.928270 AACAAGTTCAACTAGGATAATCTACG 57.072 34.615 0.00 0.00 0.00 3.51
3625 3941 8.289939 ACAAGTTCAACTAGGATAATCTACGA 57.710 34.615 0.00 0.00 0.00 3.43
3626 3942 8.746530 ACAAGTTCAACTAGGATAATCTACGAA 58.253 33.333 0.00 0.00 0.00 3.85
3627 3943 9.239002 CAAGTTCAACTAGGATAATCTACGAAG 57.761 37.037 0.00 0.00 0.00 3.79
3628 3944 7.942990 AGTTCAACTAGGATAATCTACGAAGG 58.057 38.462 0.00 0.00 0.00 3.46
3629 3945 7.778853 AGTTCAACTAGGATAATCTACGAAGGA 59.221 37.037 0.00 0.00 0.00 3.36
3630 3946 8.578151 GTTCAACTAGGATAATCTACGAAGGAT 58.422 37.037 0.00 0.00 0.00 3.24
3631 3947 8.338072 TCAACTAGGATAATCTACGAAGGATC 57.662 38.462 0.00 0.00 0.00 3.36
3632 3948 7.942894 TCAACTAGGATAATCTACGAAGGATCA 59.057 37.037 0.00 0.00 0.00 2.92
3633 3949 7.931578 ACTAGGATAATCTACGAAGGATCAG 57.068 40.000 0.00 0.00 0.00 2.90
3634 3950 5.652994 AGGATAATCTACGAAGGATCAGC 57.347 43.478 0.00 0.00 0.00 4.26
3635 3951 4.464597 AGGATAATCTACGAAGGATCAGCC 59.535 45.833 0.00 0.00 0.00 4.85
3644 3960 3.424640 AGGATCAGCCTCCCAAGAA 57.575 52.632 0.00 0.00 46.97 2.52
3645 3961 1.673767 AGGATCAGCCTCCCAAGAAA 58.326 50.000 0.00 0.00 46.97 2.52
3646 3962 1.283321 AGGATCAGCCTCCCAAGAAAC 59.717 52.381 0.00 0.00 46.97 2.78
3647 3963 1.283321 GGATCAGCCTCCCAAGAAACT 59.717 52.381 0.00 0.00 0.00 2.66
3648 3964 2.505819 GGATCAGCCTCCCAAGAAACTA 59.494 50.000 0.00 0.00 0.00 2.24
3649 3965 3.536570 GATCAGCCTCCCAAGAAACTAC 58.463 50.000 0.00 0.00 0.00 2.73
3650 3966 2.334977 TCAGCCTCCCAAGAAACTACA 58.665 47.619 0.00 0.00 0.00 2.74
3651 3967 2.303022 TCAGCCTCCCAAGAAACTACAG 59.697 50.000 0.00 0.00 0.00 2.74
3652 3968 1.003696 AGCCTCCCAAGAAACTACAGC 59.996 52.381 0.00 0.00 0.00 4.40
3653 3969 1.271379 GCCTCCCAAGAAACTACAGCA 60.271 52.381 0.00 0.00 0.00 4.41
3654 3970 2.619074 GCCTCCCAAGAAACTACAGCAT 60.619 50.000 0.00 0.00 0.00 3.79
3655 3971 3.690460 CCTCCCAAGAAACTACAGCATT 58.310 45.455 0.00 0.00 0.00 3.56
3656 3972 4.843728 CCTCCCAAGAAACTACAGCATTA 58.156 43.478 0.00 0.00 0.00 1.90
3657 3973 4.636206 CCTCCCAAGAAACTACAGCATTAC 59.364 45.833 0.00 0.00 0.00 1.89
3658 3974 5.491982 CTCCCAAGAAACTACAGCATTACT 58.508 41.667 0.00 0.00 0.00 2.24
3659 3975 5.488341 TCCCAAGAAACTACAGCATTACTC 58.512 41.667 0.00 0.00 0.00 2.59
3660 3976 4.636206 CCCAAGAAACTACAGCATTACTCC 59.364 45.833 0.00 0.00 0.00 3.85
3661 3977 4.636206 CCAAGAAACTACAGCATTACTCCC 59.364 45.833 0.00 0.00 0.00 4.30
3662 3978 5.491982 CAAGAAACTACAGCATTACTCCCT 58.508 41.667 0.00 0.00 0.00 4.20
3663 3979 5.346181 AGAAACTACAGCATTACTCCCTC 57.654 43.478 0.00 0.00 0.00 4.30
3664 3980 4.162509 AGAAACTACAGCATTACTCCCTCC 59.837 45.833 0.00 0.00 0.00 4.30
3665 3981 2.032620 ACTACAGCATTACTCCCTCCG 58.967 52.381 0.00 0.00 0.00 4.63
3666 3982 2.032620 CTACAGCATTACTCCCTCCGT 58.967 52.381 0.00 0.00 0.00 4.69
3667 3983 1.276622 ACAGCATTACTCCCTCCGTT 58.723 50.000 0.00 0.00 0.00 4.44
3668 3984 1.628846 ACAGCATTACTCCCTCCGTTT 59.371 47.619 0.00 0.00 0.00 3.60
3669 3985 2.280628 CAGCATTACTCCCTCCGTTTC 58.719 52.381 0.00 0.00 0.00 2.78
3670 3986 1.134788 AGCATTACTCCCTCCGTTTCG 60.135 52.381 0.00 0.00 0.00 3.46
3671 3987 1.134907 GCATTACTCCCTCCGTTTCGA 60.135 52.381 0.00 0.00 0.00 3.71
3672 3988 2.675889 GCATTACTCCCTCCGTTTCGAA 60.676 50.000 0.00 0.00 0.00 3.71
3673 3989 3.793559 CATTACTCCCTCCGTTTCGAAT 58.206 45.455 0.00 0.00 0.00 3.34
3674 3990 3.967332 TTACTCCCTCCGTTTCGAATT 57.033 42.857 0.00 0.00 0.00 2.17
3675 3991 5.353938 CATTACTCCCTCCGTTTCGAATTA 58.646 41.667 0.00 0.00 0.00 1.40
3676 3992 3.242549 ACTCCCTCCGTTTCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
3677 3993 2.830321 ACTCCCTCCGTTTCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
3678 3994 3.119209 ACTCCCTCCGTTTCGAATTACTC 60.119 47.826 0.00 0.00 0.00 2.59
3693 4009 7.875316 CGAATTACTCGTCATAGAAATGGAT 57.125 36.000 0.00 0.00 42.89 3.41
3694 4010 7.724205 CGAATTACTCGTCATAGAAATGGATG 58.276 38.462 0.00 0.00 42.89 3.51
3695 4011 7.382488 CGAATTACTCGTCATAGAAATGGATGT 59.618 37.037 0.00 0.00 42.89 3.06
3696 4012 9.692749 GAATTACTCGTCATAGAAATGGATGTA 57.307 33.333 0.00 0.00 33.61 2.29
3698 4014 9.862371 ATTACTCGTCATAGAAATGGATGTATC 57.138 33.333 0.00 0.00 33.61 2.24
3699 4015 7.531857 ACTCGTCATAGAAATGGATGTATCT 57.468 36.000 0.00 0.00 33.61 1.98
3700 4016 8.637196 ACTCGTCATAGAAATGGATGTATCTA 57.363 34.615 0.00 0.00 33.61 1.98
3701 4017 8.735315 ACTCGTCATAGAAATGGATGTATCTAG 58.265 37.037 0.00 0.00 33.61 2.43
3702 4018 8.863872 TCGTCATAGAAATGGATGTATCTAGA 57.136 34.615 0.00 0.00 33.61 2.43
3703 4019 9.297037 TCGTCATAGAAATGGATGTATCTAGAA 57.703 33.333 0.00 0.00 33.61 2.10
3704 4020 9.347934 CGTCATAGAAATGGATGTATCTAGAAC 57.652 37.037 0.00 0.00 33.61 3.01
3734 4050 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
3735 4051 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
3736 4052 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
3737 4053 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
3738 4054 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
3739 4055 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
3740 4056 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
3741 4057 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
3742 4058 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
3743 4059 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
3744 4060 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
3745 4061 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
3746 4062 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
3747 4063 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
3748 4064 2.736144 ACCTGCGACAAGTAATTCGA 57.264 45.000 0.00 0.00 37.43 3.71
3749 4065 3.034721 ACCTGCGACAAGTAATTCGAA 57.965 42.857 0.00 0.00 37.43 3.71
3750 4066 3.395639 ACCTGCGACAAGTAATTCGAAA 58.604 40.909 0.00 0.00 37.43 3.46
3751 4067 3.185797 ACCTGCGACAAGTAATTCGAAAC 59.814 43.478 0.00 0.00 37.43 2.78
3752 4068 3.185594 CCTGCGACAAGTAATTCGAAACA 59.814 43.478 0.00 0.00 37.43 2.83
3753 4069 4.383774 TGCGACAAGTAATTCGAAACAG 57.616 40.909 0.00 0.00 37.43 3.16
3754 4070 4.052608 TGCGACAAGTAATTCGAAACAGA 58.947 39.130 0.00 0.00 37.43 3.41
3755 4071 4.149922 TGCGACAAGTAATTCGAAACAGAG 59.850 41.667 0.00 0.00 37.43 3.35
3756 4072 4.434330 GCGACAAGTAATTCGAAACAGAGG 60.434 45.833 0.00 0.00 37.43 3.69
3757 4073 4.091509 CGACAAGTAATTCGAAACAGAGGG 59.908 45.833 0.00 0.00 37.43 4.30
3758 4074 5.223449 ACAAGTAATTCGAAACAGAGGGA 57.777 39.130 0.00 0.00 0.00 4.20
3759 4075 5.238583 ACAAGTAATTCGAAACAGAGGGAG 58.761 41.667 0.00 0.00 0.00 4.30
3760 4076 5.221661 ACAAGTAATTCGAAACAGAGGGAGT 60.222 40.000 0.00 0.00 0.00 3.85
3761 4077 6.014840 ACAAGTAATTCGAAACAGAGGGAGTA 60.015 38.462 0.00 0.00 0.00 2.59
3762 4078 6.210287 AGTAATTCGAAACAGAGGGAGTAG 57.790 41.667 0.00 0.00 0.00 2.57
3763 4079 5.950549 AGTAATTCGAAACAGAGGGAGTAGA 59.049 40.000 0.00 0.00 0.00 2.59
3764 4080 5.740290 AATTCGAAACAGAGGGAGTAGAA 57.260 39.130 0.00 0.00 0.00 2.10
3765 4081 5.941555 ATTCGAAACAGAGGGAGTAGAAT 57.058 39.130 0.00 0.00 0.00 2.40
3766 4082 4.985538 TCGAAACAGAGGGAGTAGAATC 57.014 45.455 0.00 0.00 0.00 2.52
3767 4083 4.341487 TCGAAACAGAGGGAGTAGAATCA 58.659 43.478 0.00 0.00 0.00 2.57
3768 4084 4.956700 TCGAAACAGAGGGAGTAGAATCAT 59.043 41.667 0.00 0.00 0.00 2.45
3769 4085 6.127101 TCGAAACAGAGGGAGTAGAATCATA 58.873 40.000 0.00 0.00 0.00 2.15
3770 4086 6.263392 TCGAAACAGAGGGAGTAGAATCATAG 59.737 42.308 0.00 0.00 0.00 2.23
3771 4087 6.515862 CGAAACAGAGGGAGTAGAATCATAGG 60.516 46.154 0.00 0.00 0.00 2.57
3772 4088 5.671463 ACAGAGGGAGTAGAATCATAGGA 57.329 43.478 0.00 0.00 0.00 2.94
3773 4089 6.031964 ACAGAGGGAGTAGAATCATAGGAA 57.968 41.667 0.00 0.00 0.00 3.36
3774 4090 6.629156 ACAGAGGGAGTAGAATCATAGGAAT 58.371 40.000 0.00 0.00 0.00 3.01
3775 4091 7.079048 ACAGAGGGAGTAGAATCATAGGAATT 58.921 38.462 0.00 0.00 0.00 2.17
3776 4092 7.234577 ACAGAGGGAGTAGAATCATAGGAATTC 59.765 40.741 0.00 0.00 0.00 2.17
3777 4093 6.728632 AGAGGGAGTAGAATCATAGGAATTCC 59.271 42.308 17.31 17.31 0.00 3.01
3791 4107 4.729868 AGGAATTCCTAGCAAACTTGTGT 58.270 39.130 25.99 0.00 46.48 3.72
3792 4108 4.520492 AGGAATTCCTAGCAAACTTGTGTG 59.480 41.667 25.99 0.00 46.48 3.82
3793 4109 3.923017 ATTCCTAGCAAACTTGTGTGC 57.077 42.857 7.78 7.78 41.22 4.57
3794 4110 1.604604 TCCTAGCAAACTTGTGTGCC 58.395 50.000 11.84 0.00 41.88 5.01
3795 4111 1.133945 TCCTAGCAAACTTGTGTGCCA 60.134 47.619 11.84 0.00 41.88 4.92
3796 4112 1.001378 CCTAGCAAACTTGTGTGCCAC 60.001 52.381 11.84 0.00 41.88 5.01
3797 4113 1.001378 CTAGCAAACTTGTGTGCCACC 60.001 52.381 11.84 0.00 41.88 4.61
3798 4114 0.684153 AGCAAACTTGTGTGCCACCT 60.684 50.000 11.84 0.00 41.88 4.00
3799 4115 0.175531 GCAAACTTGTGTGCCACCTT 59.824 50.000 4.66 0.00 34.58 3.50
3800 4116 1.925229 CAAACTTGTGTGCCACCTTG 58.075 50.000 0.00 0.00 32.73 3.61
3801 4117 1.204467 CAAACTTGTGTGCCACCTTGT 59.796 47.619 0.00 0.00 32.73 3.16
3802 4118 1.555967 AACTTGTGTGCCACCTTGTT 58.444 45.000 0.00 3.54 32.73 2.83
3803 4119 1.102978 ACTTGTGTGCCACCTTGTTC 58.897 50.000 0.00 0.00 32.73 3.18
3804 4120 0.385390 CTTGTGTGCCACCTTGTTCC 59.615 55.000 0.00 0.00 32.73 3.62
3805 4121 1.040339 TTGTGTGCCACCTTGTTCCC 61.040 55.000 0.00 0.00 32.73 3.97
3806 4122 2.197324 TGTGCCACCTTGTTCCCC 59.803 61.111 0.00 0.00 0.00 4.81
3807 4123 2.391130 TGTGCCACCTTGTTCCCCT 61.391 57.895 0.00 0.00 0.00 4.79
3808 4124 1.063070 TGTGCCACCTTGTTCCCCTA 61.063 55.000 0.00 0.00 0.00 3.53
3809 4125 0.111639 GTGCCACCTTGTTCCCCTAA 59.888 55.000 0.00 0.00 0.00 2.69
3810 4126 0.404040 TGCCACCTTGTTCCCCTAAG 59.596 55.000 0.00 0.00 0.00 2.18
3811 4127 0.404426 GCCACCTTGTTCCCCTAAGT 59.596 55.000 0.00 0.00 0.00 2.24
3812 4128 1.886655 GCCACCTTGTTCCCCTAAGTG 60.887 57.143 0.00 0.00 0.00 3.16
3813 4129 1.702957 CCACCTTGTTCCCCTAAGTGA 59.297 52.381 0.00 0.00 0.00 3.41
3814 4130 2.290323 CCACCTTGTTCCCCTAAGTGAG 60.290 54.545 0.00 0.00 0.00 3.51
3815 4131 2.637872 CACCTTGTTCCCCTAAGTGAGA 59.362 50.000 0.00 0.00 0.00 3.27
3816 4132 2.907042 ACCTTGTTCCCCTAAGTGAGAG 59.093 50.000 0.00 0.00 0.00 3.20
3817 4133 2.237392 CCTTGTTCCCCTAAGTGAGAGG 59.763 54.545 0.00 0.00 0.00 3.69
3818 4134 3.173965 CTTGTTCCCCTAAGTGAGAGGA 58.826 50.000 0.00 0.00 35.99 3.71
3819 4135 3.269592 TGTTCCCCTAAGTGAGAGGAA 57.730 47.619 0.00 0.00 35.99 3.36
3820 4136 3.593942 TGTTCCCCTAAGTGAGAGGAAA 58.406 45.455 0.00 0.00 38.30 3.13
3821 4137 3.977999 TGTTCCCCTAAGTGAGAGGAAAA 59.022 43.478 0.00 0.00 38.30 2.29
3822 4138 4.041691 TGTTCCCCTAAGTGAGAGGAAAAG 59.958 45.833 0.00 0.00 38.30 2.27
3823 4139 3.182152 TCCCCTAAGTGAGAGGAAAAGG 58.818 50.000 0.00 0.00 35.99 3.11
3824 4140 3.181399 TCCCCTAAGTGAGAGGAAAAGGA 60.181 47.826 0.00 0.00 35.99 3.36
3825 4141 3.055021 CCCCTAAGTGAGAGGAAAAGGAC 60.055 52.174 0.00 0.00 35.99 3.85
3826 4142 3.583086 CCCTAAGTGAGAGGAAAAGGACA 59.417 47.826 0.00 0.00 35.99 4.02
3827 4143 4.041691 CCCTAAGTGAGAGGAAAAGGACAA 59.958 45.833 0.00 0.00 35.99 3.18
3828 4144 5.456186 CCCTAAGTGAGAGGAAAAGGACAAA 60.456 44.000 0.00 0.00 35.99 2.83
3829 4145 6.241645 CCTAAGTGAGAGGAAAAGGACAAAT 58.758 40.000 0.00 0.00 35.99 2.32
3830 4146 7.394816 CCTAAGTGAGAGGAAAAGGACAAATA 58.605 38.462 0.00 0.00 35.99 1.40
3831 4147 7.334671 CCTAAGTGAGAGGAAAAGGACAAATAC 59.665 40.741 0.00 0.00 35.99 1.89
3832 4148 6.441088 AGTGAGAGGAAAAGGACAAATACT 57.559 37.500 0.00 0.00 0.00 2.12
3833 4149 6.842676 AGTGAGAGGAAAAGGACAAATACTT 58.157 36.000 0.00 0.00 0.00 2.24
3834 4150 7.290813 AGTGAGAGGAAAAGGACAAATACTTT 58.709 34.615 0.00 0.00 41.08 2.66
3835 4151 7.229506 AGTGAGAGGAAAAGGACAAATACTTTG 59.770 37.037 0.00 0.00 38.09 2.77
3836 4152 7.228706 GTGAGAGGAAAAGGACAAATACTTTGA 59.771 37.037 6.61 0.00 38.09 2.69
3837 4153 7.445402 TGAGAGGAAAAGGACAAATACTTTGAG 59.555 37.037 6.61 0.00 38.09 3.02
3838 4154 6.207614 AGAGGAAAAGGACAAATACTTTGAGC 59.792 38.462 6.61 0.00 38.09 4.26
3839 4155 6.071320 AGGAAAAGGACAAATACTTTGAGCT 58.929 36.000 6.61 0.00 38.09 4.09
3840 4156 7.231467 AGGAAAAGGACAAATACTTTGAGCTA 58.769 34.615 6.61 0.00 38.09 3.32
3841 4157 7.724061 AGGAAAAGGACAAATACTTTGAGCTAA 59.276 33.333 6.61 0.00 38.09 3.09
3842 4158 8.357402 GGAAAAGGACAAATACTTTGAGCTAAA 58.643 33.333 6.61 0.00 38.09 1.85
3843 4159 9.914131 GAAAAGGACAAATACTTTGAGCTAAAT 57.086 29.630 6.61 0.00 38.09 1.40
3844 4160 9.696917 AAAAGGACAAATACTTTGAGCTAAATG 57.303 29.630 6.61 0.00 38.09 2.32
3845 4161 8.635765 AAGGACAAATACTTTGAGCTAAATGA 57.364 30.769 3.72 0.00 43.26 2.57
3846 4162 8.635765 AGGACAAATACTTTGAGCTAAATGAA 57.364 30.769 3.72 0.00 43.26 2.57
3847 4163 9.077885 AGGACAAATACTTTGAGCTAAATGAAA 57.922 29.630 3.72 0.00 43.26 2.69
3848 4164 9.691362 GGACAAATACTTTGAGCTAAATGAAAA 57.309 29.630 3.72 0.00 43.26 2.29
3854 4170 7.992180 ACTTTGAGCTAAATGAAAACACTTG 57.008 32.000 3.72 0.00 0.00 3.16
3855 4171 7.547227 ACTTTGAGCTAAATGAAAACACTTGT 58.453 30.769 3.72 0.00 0.00 3.16
3856 4172 8.034804 ACTTTGAGCTAAATGAAAACACTTGTT 58.965 29.630 3.72 0.00 40.50 2.83
3857 4173 7.985634 TTGAGCTAAATGAAAACACTTGTTC 57.014 32.000 0.00 0.00 37.25 3.18
3858 4174 7.094508 TGAGCTAAATGAAAACACTTGTTCA 57.905 32.000 0.00 0.00 37.25 3.18
3859 4175 7.195646 TGAGCTAAATGAAAACACTTGTTCAG 58.804 34.615 0.00 0.00 37.19 3.02
3860 4176 7.066887 TGAGCTAAATGAAAACACTTGTTCAGA 59.933 33.333 0.00 0.00 37.19 3.27
3861 4177 7.420800 AGCTAAATGAAAACACTTGTTCAGAG 58.579 34.615 0.00 0.00 37.19 3.35
3862 4178 7.067494 AGCTAAATGAAAACACTTGTTCAGAGT 59.933 33.333 0.00 0.00 37.19 3.24
3863 4179 8.342634 GCTAAATGAAAACACTTGTTCAGAGTA 58.657 33.333 0.00 0.00 37.19 2.59
3864 4180 9.869844 CTAAATGAAAACACTTGTTCAGAGTAG 57.130 33.333 0.00 0.00 37.19 2.57
3865 4181 7.865706 AATGAAAACACTTGTTCAGAGTAGT 57.134 32.000 0.00 0.00 37.19 2.73
3866 4182 8.958119 AATGAAAACACTTGTTCAGAGTAGTA 57.042 30.769 0.00 0.00 37.19 1.82
3867 4183 8.594881 ATGAAAACACTTGTTCAGAGTAGTAG 57.405 34.615 0.00 0.00 37.19 2.57
3868 4184 7.778083 TGAAAACACTTGTTCAGAGTAGTAGA 58.222 34.615 0.00 0.00 37.25 2.59
3869 4185 8.255206 TGAAAACACTTGTTCAGAGTAGTAGAA 58.745 33.333 0.00 0.00 37.25 2.10
3870 4186 9.262358 GAAAACACTTGTTCAGAGTAGTAGAAT 57.738 33.333 0.00 0.00 37.25 2.40
3873 4189 9.915629 AACACTTGTTCAGAGTAGTAGAATAAG 57.084 33.333 14.74 14.74 42.50 1.73
3874 4190 9.298250 ACACTTGTTCAGAGTAGTAGAATAAGA 57.702 33.333 19.60 0.00 40.63 2.10
3902 4218 9.871238 TGAAACTCTAGATTTAGTACCATGAAC 57.129 33.333 0.00 0.00 0.00 3.18
3903 4219 8.928270 AAACTCTAGATTTAGTACCATGAACG 57.072 34.615 0.00 0.00 0.00 3.95
3904 4220 7.642082 ACTCTAGATTTAGTACCATGAACGT 57.358 36.000 0.00 0.00 0.00 3.99
3905 4221 7.705214 ACTCTAGATTTAGTACCATGAACGTC 58.295 38.462 0.00 0.00 0.00 4.34
3906 4222 7.338703 ACTCTAGATTTAGTACCATGAACGTCA 59.661 37.037 0.00 0.00 0.00 4.35
3907 4223 8.058667 TCTAGATTTAGTACCATGAACGTCAA 57.941 34.615 0.00 0.00 0.00 3.18
3908 4224 8.188799 TCTAGATTTAGTACCATGAACGTCAAG 58.811 37.037 0.00 0.00 0.00 3.02
3909 4225 6.931838 AGATTTAGTACCATGAACGTCAAGA 58.068 36.000 0.00 0.00 0.00 3.02
3910 4226 7.036220 AGATTTAGTACCATGAACGTCAAGAG 58.964 38.462 0.00 0.00 0.00 2.85
3911 4227 5.970317 TTAGTACCATGAACGTCAAGAGA 57.030 39.130 0.00 0.00 0.00 3.10
3912 4228 6.525578 TTAGTACCATGAACGTCAAGAGAT 57.474 37.500 0.00 0.00 0.00 2.75
3913 4229 4.748892 AGTACCATGAACGTCAAGAGATG 58.251 43.478 0.00 0.00 36.81 2.90
3914 4230 3.961480 ACCATGAACGTCAAGAGATGA 57.039 42.857 0.00 0.00 34.76 2.92
3915 4231 4.271696 ACCATGAACGTCAAGAGATGAA 57.728 40.909 0.00 0.00 40.50 2.57
3916 4232 4.836825 ACCATGAACGTCAAGAGATGAAT 58.163 39.130 0.00 0.00 40.50 2.57
3917 4233 4.633126 ACCATGAACGTCAAGAGATGAATG 59.367 41.667 0.00 0.00 40.50 2.67
3918 4234 4.633126 CCATGAACGTCAAGAGATGAATGT 59.367 41.667 0.00 0.00 40.50 2.71
3919 4235 5.122869 CCATGAACGTCAAGAGATGAATGTT 59.877 40.000 0.00 0.00 40.50 2.71
3920 4236 5.596268 TGAACGTCAAGAGATGAATGTTG 57.404 39.130 0.00 0.00 40.50 3.33
3921 4237 5.296748 TGAACGTCAAGAGATGAATGTTGA 58.703 37.500 0.00 0.00 40.50 3.18
3922 4238 5.934043 TGAACGTCAAGAGATGAATGTTGAT 59.066 36.000 0.00 0.00 40.50 2.57
3923 4239 5.791367 ACGTCAAGAGATGAATGTTGATG 57.209 39.130 4.75 4.75 40.50 3.07
3924 4240 4.093998 ACGTCAAGAGATGAATGTTGATGC 59.906 41.667 5.91 0.00 40.50 3.91
3925 4241 4.495349 CGTCAAGAGATGAATGTTGATGCC 60.495 45.833 0.00 0.00 40.50 4.40
3926 4242 3.949754 TCAAGAGATGAATGTTGATGCCC 59.050 43.478 0.00 0.00 34.30 5.36
3927 4243 3.657398 AGAGATGAATGTTGATGCCCA 57.343 42.857 0.00 0.00 0.00 5.36
3928 4244 4.180377 AGAGATGAATGTTGATGCCCAT 57.820 40.909 0.00 0.00 0.00 4.00
3929 4245 5.314718 AGAGATGAATGTTGATGCCCATA 57.685 39.130 0.00 0.00 0.00 2.74
3930 4246 5.888901 AGAGATGAATGTTGATGCCCATAT 58.111 37.500 0.00 0.00 0.00 1.78
3931 4247 7.024345 AGAGATGAATGTTGATGCCCATATA 57.976 36.000 0.00 0.00 0.00 0.86
3932 4248 7.640313 AGAGATGAATGTTGATGCCCATATAT 58.360 34.615 0.00 0.00 0.00 0.86
3933 4249 7.774157 AGAGATGAATGTTGATGCCCATATATC 59.226 37.037 0.00 0.00 0.00 1.63
3934 4250 7.407729 AGATGAATGTTGATGCCCATATATCA 58.592 34.615 0.00 0.00 0.00 2.15
3935 4251 7.891712 AGATGAATGTTGATGCCCATATATCAA 59.108 33.333 0.00 0.00 40.06 2.57
3936 4252 7.836479 TGAATGTTGATGCCCATATATCAAA 57.164 32.000 0.00 0.00 42.86 2.69
3999 4315 2.284515 CTTTTGGAGGCCCGGGCTAT 62.285 60.000 42.70 31.94 38.98 2.97
4039 4355 4.843728 TGATCAATAAAGCTCGGGAGTTT 58.156 39.130 0.00 0.00 33.15 2.66
4047 4363 1.001633 AGCTCGGGAGTTTCGCTAAAA 59.998 47.619 0.00 0.00 0.00 1.52
4048 4364 1.802365 GCTCGGGAGTTTCGCTAAAAA 59.198 47.619 0.00 0.00 0.00 1.94
4069 4385 7.998753 AAAAAGAAGAGATGTTGCTTCAAAG 57.001 32.000 0.00 0.00 42.21 2.77
4070 4386 6.949352 AAAGAAGAGATGTTGCTTCAAAGA 57.051 33.333 0.00 0.00 42.21 2.52
4071 4387 6.949352 AAGAAGAGATGTTGCTTCAAAGAA 57.051 33.333 0.00 0.00 42.21 2.52
4072 4388 6.949352 AGAAGAGATGTTGCTTCAAAGAAA 57.051 33.333 0.00 0.00 42.21 2.52
4073 4389 7.338800 AGAAGAGATGTTGCTTCAAAGAAAA 57.661 32.000 0.00 0.00 42.21 2.29
4074 4390 7.775120 AGAAGAGATGTTGCTTCAAAGAAAAA 58.225 30.769 0.00 0.00 42.21 1.94
4116 4432 1.228552 TTCCAGGGAAGCTTGTGGC 60.229 57.895 2.10 0.00 42.19 5.01
4117 4433 2.677875 CCAGGGAAGCTTGTGGCC 60.678 66.667 2.10 0.00 43.05 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.761739 CCTTTTGCTCTGAACAGGAATACA 59.238 41.667 1.93 0.00 0.00 2.29
53 54 3.818961 ATGAAGTTGAACAGCATGACG 57.181 42.857 0.00 0.00 39.69 4.35
94 95 7.230510 TCTGTTGTTTATTTGAATACCAGCACT 59.769 33.333 0.00 0.00 0.00 4.40
150 151 8.798859 ATAGATGGCAGGTGTAATTCAATATC 57.201 34.615 0.00 0.00 0.00 1.63
430 432 1.558294 ACCTCCGTCCCAAATTACCTC 59.442 52.381 0.00 0.00 0.00 3.85
478 480 8.758633 TGTAGTGACTTCAATAGTTAGCTTTC 57.241 34.615 0.00 0.00 37.17 2.62
533 535 7.631717 ACCCTAATGCTAAATCTTTCAACTC 57.368 36.000 0.00 0.00 0.00 3.01
590 592 7.327975 TCAACATATCTTAGAATTGTCGGTGT 58.672 34.615 1.79 0.00 0.00 4.16
609 611 4.940046 GTCCACTTCTGTCATGATCAACAT 59.060 41.667 0.00 0.00 40.17 2.71
1121 1124 4.058817 GAGAAGTGTTCACCGAGTTGATT 58.941 43.478 0.00 0.00 0.00 2.57
1131 1134 5.542779 ACTCTGGTAATGAGAAGTGTTCAC 58.457 41.667 0.00 0.00 35.66 3.18
1133 1136 6.223852 TGAACTCTGGTAATGAGAAGTGTTC 58.776 40.000 8.68 8.68 40.75 3.18
2228 2234 1.547372 GCACATTCTGGAAACTGGCAT 59.453 47.619 0.00 0.00 0.00 4.40
2447 2453 2.829384 GCACCTCTTCCCACCACCA 61.829 63.158 0.00 0.00 0.00 4.17
2789 2795 1.064654 GCAGCAATTTCCATCTCGTCC 59.935 52.381 0.00 0.00 0.00 4.79
2945 2951 1.890979 CGCCATCATGACAGAGGCC 60.891 63.158 18.93 0.00 42.28 5.19
3055 3061 5.612725 AGGACAACAATTGGTGAAATGTT 57.387 34.783 29.74 6.08 35.97 2.71
3315 3328 1.150560 ACTTCTACCCAGTACCCACCA 59.849 52.381 0.00 0.00 0.00 4.17
3317 3330 2.496470 CAGACTTCTACCCAGTACCCAC 59.504 54.545 0.00 0.00 0.00 4.61
3318 3331 2.111255 ACAGACTTCTACCCAGTACCCA 59.889 50.000 0.00 0.00 0.00 4.51
3319 3332 2.759535 GACAGACTTCTACCCAGTACCC 59.240 54.545 0.00 0.00 0.00 3.69
3320 3333 2.759535 GGACAGACTTCTACCCAGTACC 59.240 54.545 0.00 0.00 0.00 3.34
3321 3334 3.699413 AGGACAGACTTCTACCCAGTAC 58.301 50.000 0.00 0.00 0.00 2.73
3322 3335 5.728937 ATAGGACAGACTTCTACCCAGTA 57.271 43.478 0.00 0.00 0.00 2.74
3323 3336 4.611564 ATAGGACAGACTTCTACCCAGT 57.388 45.455 0.00 0.00 0.00 4.00
3324 3337 6.015010 CCAATATAGGACAGACTTCTACCCAG 60.015 46.154 0.00 0.00 0.00 4.45
3341 3354 4.891992 AACCCTCATCCGACCAATATAG 57.108 45.455 0.00 0.00 0.00 1.31
3349 3362 3.277142 ACCAAATAACCCTCATCCGAC 57.723 47.619 0.00 0.00 0.00 4.79
3406 3419 5.508657 CGACTGAGAATTATCTGATGGCTCA 60.509 44.000 13.15 6.85 35.54 4.26
3410 3423 3.672397 CGCGACTGAGAATTATCTGATGG 59.328 47.826 13.15 3.92 35.54 3.51
3496 3509 3.060674 GCATCAACATTCATCTCTCGACG 60.061 47.826 0.00 0.00 0.00 5.12
3500 3816 5.752892 ATGTGCATCAACATTCATCTCTC 57.247 39.130 0.00 0.00 37.50 3.20
3547 3863 2.828520 TGTGCCACAGGTTTCAGAAAAA 59.171 40.909 0.00 0.00 0.00 1.94
3548 3864 2.165437 GTGTGCCACAGGTTTCAGAAAA 59.835 45.455 0.00 0.00 34.08 2.29
3549 3865 1.748493 GTGTGCCACAGGTTTCAGAAA 59.252 47.619 0.00 0.00 34.08 2.52
3550 3866 1.064758 AGTGTGCCACAGGTTTCAGAA 60.065 47.619 0.00 0.00 36.74 3.02
3551 3867 0.546122 AGTGTGCCACAGGTTTCAGA 59.454 50.000 0.00 0.00 36.74 3.27
3552 3868 2.254546 TAGTGTGCCACAGGTTTCAG 57.745 50.000 0.00 0.00 36.74 3.02
3553 3869 2.949177 ATAGTGTGCCACAGGTTTCA 57.051 45.000 0.00 0.00 36.74 2.69
3554 3870 3.146066 TGAATAGTGTGCCACAGGTTTC 58.854 45.455 0.00 2.32 36.74 2.78
3556 3872 2.949177 TGAATAGTGTGCCACAGGTT 57.051 45.000 0.00 0.00 36.74 3.50
3557 3873 2.949177 TTGAATAGTGTGCCACAGGT 57.051 45.000 0.00 0.00 36.74 4.00
3558 3874 3.758023 TGATTTGAATAGTGTGCCACAGG 59.242 43.478 0.00 0.00 36.74 4.00
3559 3875 5.375417 TTGATTTGAATAGTGTGCCACAG 57.625 39.130 0.00 0.00 36.74 3.66
3560 3876 5.781210 TTTGATTTGAATAGTGTGCCACA 57.219 34.783 0.00 0.00 36.74 4.17
3561 3877 7.538575 AGTATTTGATTTGAATAGTGTGCCAC 58.461 34.615 0.00 0.00 34.10 5.01
3562 3878 7.701539 AGTATTTGATTTGAATAGTGTGCCA 57.298 32.000 0.00 0.00 0.00 4.92
3563 3879 8.028938 ACAAGTATTTGATTTGAATAGTGTGCC 58.971 33.333 4.81 0.00 37.73 5.01
3564 3880 8.970691 ACAAGTATTTGATTTGAATAGTGTGC 57.029 30.769 4.81 0.00 37.73 4.57
3586 3902 8.500753 AGTTGAACTTGTTAGTGATGTAACAA 57.499 30.769 8.48 8.48 46.05 2.83
3587 3903 9.256477 CTAGTTGAACTTGTTAGTGATGTAACA 57.744 33.333 1.97 0.00 40.40 2.41
3588 3904 8.709646 CCTAGTTGAACTTGTTAGTGATGTAAC 58.290 37.037 1.97 0.00 34.01 2.50
3589 3905 8.644216 TCCTAGTTGAACTTGTTAGTGATGTAA 58.356 33.333 1.97 0.00 34.01 2.41
3590 3906 8.185506 TCCTAGTTGAACTTGTTAGTGATGTA 57.814 34.615 1.97 0.00 34.01 2.29
3591 3907 7.062749 TCCTAGTTGAACTTGTTAGTGATGT 57.937 36.000 1.97 0.00 34.01 3.06
3592 3908 9.653287 TTATCCTAGTTGAACTTGTTAGTGATG 57.347 33.333 1.97 0.00 34.01 3.07
3594 3910 9.871238 GATTATCCTAGTTGAACTTGTTAGTGA 57.129 33.333 1.97 0.00 34.01 3.41
3595 3911 9.877178 AGATTATCCTAGTTGAACTTGTTAGTG 57.123 33.333 1.97 0.00 34.01 2.74
3599 3915 8.746530 TCGTAGATTATCCTAGTTGAACTTGTT 58.253 33.333 1.97 0.00 0.00 2.83
3600 3916 8.289939 TCGTAGATTATCCTAGTTGAACTTGT 57.710 34.615 1.97 0.00 0.00 3.16
3601 3917 9.239002 CTTCGTAGATTATCCTAGTTGAACTTG 57.761 37.037 1.97 0.66 35.04 3.16
3602 3918 8.414778 CCTTCGTAGATTATCCTAGTTGAACTT 58.585 37.037 1.97 0.00 35.04 2.66
3603 3919 7.778853 TCCTTCGTAGATTATCCTAGTTGAACT 59.221 37.037 2.37 2.37 35.04 3.01
3604 3920 7.938715 TCCTTCGTAGATTATCCTAGTTGAAC 58.061 38.462 0.00 0.00 35.04 3.18
3605 3921 8.707796 ATCCTTCGTAGATTATCCTAGTTGAA 57.292 34.615 0.00 0.00 35.04 2.69
3606 3922 7.942894 TGATCCTTCGTAGATTATCCTAGTTGA 59.057 37.037 0.00 0.00 35.04 3.18
3607 3923 8.112016 TGATCCTTCGTAGATTATCCTAGTTG 57.888 38.462 0.00 0.00 35.04 3.16
3608 3924 7.094118 GCTGATCCTTCGTAGATTATCCTAGTT 60.094 40.741 0.00 0.00 35.04 2.24
3609 3925 6.376018 GCTGATCCTTCGTAGATTATCCTAGT 59.624 42.308 0.00 0.00 35.04 2.57
3610 3926 6.183360 GGCTGATCCTTCGTAGATTATCCTAG 60.183 46.154 0.00 0.00 35.04 3.02
3611 3927 5.652891 GGCTGATCCTTCGTAGATTATCCTA 59.347 44.000 0.00 0.00 35.04 2.94
3612 3928 4.464597 GGCTGATCCTTCGTAGATTATCCT 59.535 45.833 0.00 0.00 35.04 3.24
3613 3929 4.464597 AGGCTGATCCTTCGTAGATTATCC 59.535 45.833 0.00 0.00 44.75 2.59
3614 3930 5.652994 AGGCTGATCCTTCGTAGATTATC 57.347 43.478 0.00 0.00 44.75 1.75
3627 3943 1.283321 AGTTTCTTGGGAGGCTGATCC 59.717 52.381 0.00 0.00 38.76 3.36
3628 3944 2.797177 AGTTTCTTGGGAGGCTGATC 57.203 50.000 0.00 0.00 0.00 2.92
3629 3945 2.912956 TGTAGTTTCTTGGGAGGCTGAT 59.087 45.455 0.00 0.00 0.00 2.90
3630 3946 2.303022 CTGTAGTTTCTTGGGAGGCTGA 59.697 50.000 0.00 0.00 0.00 4.26
3631 3947 2.704572 CTGTAGTTTCTTGGGAGGCTG 58.295 52.381 0.00 0.00 0.00 4.85
3632 3948 1.003696 GCTGTAGTTTCTTGGGAGGCT 59.996 52.381 0.00 0.00 0.00 4.58
3633 3949 1.271379 TGCTGTAGTTTCTTGGGAGGC 60.271 52.381 0.00 0.00 0.00 4.70
3634 3950 2.859165 TGCTGTAGTTTCTTGGGAGG 57.141 50.000 0.00 0.00 0.00 4.30
3635 3951 5.491982 AGTAATGCTGTAGTTTCTTGGGAG 58.508 41.667 0.00 0.00 0.00 4.30
3636 3952 5.488341 GAGTAATGCTGTAGTTTCTTGGGA 58.512 41.667 0.00 0.00 0.00 4.37
3637 3953 4.636206 GGAGTAATGCTGTAGTTTCTTGGG 59.364 45.833 0.00 0.00 0.00 4.12
3638 3954 4.636206 GGGAGTAATGCTGTAGTTTCTTGG 59.364 45.833 0.00 0.00 0.00 3.61
3639 3955 5.491982 AGGGAGTAATGCTGTAGTTTCTTG 58.508 41.667 0.00 0.00 0.00 3.02
3640 3956 5.338463 GGAGGGAGTAATGCTGTAGTTTCTT 60.338 44.000 0.00 0.00 0.00 2.52
3641 3957 4.162509 GGAGGGAGTAATGCTGTAGTTTCT 59.837 45.833 0.00 0.00 0.00 2.52
3642 3958 4.443621 GGAGGGAGTAATGCTGTAGTTTC 58.556 47.826 0.00 0.00 0.00 2.78
3643 3959 3.118738 CGGAGGGAGTAATGCTGTAGTTT 60.119 47.826 0.00 0.00 0.00 2.66
3644 3960 2.431057 CGGAGGGAGTAATGCTGTAGTT 59.569 50.000 0.00 0.00 0.00 2.24
3645 3961 2.032620 CGGAGGGAGTAATGCTGTAGT 58.967 52.381 0.00 0.00 0.00 2.73
3646 3962 2.032620 ACGGAGGGAGTAATGCTGTAG 58.967 52.381 0.00 0.00 0.00 2.74
3647 3963 2.154567 ACGGAGGGAGTAATGCTGTA 57.845 50.000 0.00 0.00 0.00 2.74
3648 3964 1.276622 AACGGAGGGAGTAATGCTGT 58.723 50.000 0.00 0.00 0.00 4.40
3649 3965 2.280628 GAAACGGAGGGAGTAATGCTG 58.719 52.381 0.00 0.00 0.00 4.41
3650 3966 1.134788 CGAAACGGAGGGAGTAATGCT 60.135 52.381 0.00 0.00 0.00 3.79
3651 3967 1.134907 TCGAAACGGAGGGAGTAATGC 60.135 52.381 0.00 0.00 0.00 3.56
3652 3968 2.953466 TCGAAACGGAGGGAGTAATG 57.047 50.000 0.00 0.00 0.00 1.90
3653 3969 4.482952 AATTCGAAACGGAGGGAGTAAT 57.517 40.909 0.00 0.00 0.00 1.89
3654 3970 3.967332 AATTCGAAACGGAGGGAGTAA 57.033 42.857 0.00 0.00 0.00 2.24
3655 3971 4.019174 AGTAATTCGAAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
3656 3972 2.830321 AGTAATTCGAAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
3657 3973 3.445857 GAGTAATTCGAAACGGAGGGAG 58.554 50.000 0.00 0.00 0.00 4.30
3658 3974 3.515330 GAGTAATTCGAAACGGAGGGA 57.485 47.619 0.00 0.00 0.00 4.20
3670 3986 8.594881 ACATCCATTTCTATGACGAGTAATTC 57.405 34.615 0.00 0.00 33.37 2.17
3672 3988 9.862371 GATACATCCATTTCTATGACGAGTAAT 57.138 33.333 0.00 0.00 33.37 1.89
3673 3989 9.078990 AGATACATCCATTTCTATGACGAGTAA 57.921 33.333 0.00 0.00 33.37 2.24
3674 3990 8.637196 AGATACATCCATTTCTATGACGAGTA 57.363 34.615 0.00 0.00 33.37 2.59
3675 3991 7.531857 AGATACATCCATTTCTATGACGAGT 57.468 36.000 0.00 0.00 33.37 4.18
3676 3992 8.951243 TCTAGATACATCCATTTCTATGACGAG 58.049 37.037 0.00 0.00 33.37 4.18
3677 3993 8.863872 TCTAGATACATCCATTTCTATGACGA 57.136 34.615 0.00 0.00 33.37 4.20
3678 3994 9.347934 GTTCTAGATACATCCATTTCTATGACG 57.652 37.037 0.00 0.00 33.37 4.35
3708 4024 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
3709 4025 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
3710 4026 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
3711 4027 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
3712 4028 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
3713 4029 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
3714 4030 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
3715 4031 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
3716 4032 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
3717 4033 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
3718 4034 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
3719 4035 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
3720 4036 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
3721 4037 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
3722 4038 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
3723 4039 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
3724 4040 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
3725 4041 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
3726 4042 4.109766 TCGAATTACTTGTCGCAGGTATG 58.890 43.478 3.46 0.00 37.19 2.39
3727 4043 4.380841 TCGAATTACTTGTCGCAGGTAT 57.619 40.909 3.46 0.00 37.19 2.73
3728 4044 3.853831 TCGAATTACTTGTCGCAGGTA 57.146 42.857 0.00 0.00 37.19 3.08
3729 4045 2.736144 TCGAATTACTTGTCGCAGGT 57.264 45.000 0.00 0.91 37.19 4.00
3730 4046 3.185594 TGTTTCGAATTACTTGTCGCAGG 59.814 43.478 0.00 0.00 37.19 4.85
3731 4047 4.149922 TCTGTTTCGAATTACTTGTCGCAG 59.850 41.667 0.00 0.00 37.19 5.18
3732 4048 4.052608 TCTGTTTCGAATTACTTGTCGCA 58.947 39.130 0.00 0.00 37.19 5.10
3733 4049 4.434330 CCTCTGTTTCGAATTACTTGTCGC 60.434 45.833 0.00 0.00 37.19 5.19
3734 4050 4.091509 CCCTCTGTTTCGAATTACTTGTCG 59.908 45.833 0.00 0.00 38.62 4.35
3735 4051 5.235516 TCCCTCTGTTTCGAATTACTTGTC 58.764 41.667 0.00 0.00 0.00 3.18
3736 4052 5.221661 ACTCCCTCTGTTTCGAATTACTTGT 60.222 40.000 0.00 0.00 0.00 3.16
3737 4053 5.238583 ACTCCCTCTGTTTCGAATTACTTG 58.761 41.667 0.00 0.00 0.00 3.16
3738 4054 5.485209 ACTCCCTCTGTTTCGAATTACTT 57.515 39.130 0.00 0.00 0.00 2.24
3739 4055 5.950549 TCTACTCCCTCTGTTTCGAATTACT 59.049 40.000 0.00 0.00 0.00 2.24
3740 4056 6.205101 TCTACTCCCTCTGTTTCGAATTAC 57.795 41.667 0.00 0.00 0.00 1.89
3741 4057 6.845758 TTCTACTCCCTCTGTTTCGAATTA 57.154 37.500 0.00 0.00 0.00 1.40
3742 4058 5.740290 TTCTACTCCCTCTGTTTCGAATT 57.260 39.130 0.00 0.00 0.00 2.17
3743 4059 5.422331 TGATTCTACTCCCTCTGTTTCGAAT 59.578 40.000 0.00 0.00 0.00 3.34
3744 4060 4.770531 TGATTCTACTCCCTCTGTTTCGAA 59.229 41.667 0.00 0.00 0.00 3.71
3745 4061 4.341487 TGATTCTACTCCCTCTGTTTCGA 58.659 43.478 0.00 0.00 0.00 3.71
3746 4062 4.720649 TGATTCTACTCCCTCTGTTTCG 57.279 45.455 0.00 0.00 0.00 3.46
3747 4063 6.551601 TCCTATGATTCTACTCCCTCTGTTTC 59.448 42.308 0.00 0.00 0.00 2.78
3748 4064 6.444704 TCCTATGATTCTACTCCCTCTGTTT 58.555 40.000 0.00 0.00 0.00 2.83
3749 4065 6.031964 TCCTATGATTCTACTCCCTCTGTT 57.968 41.667 0.00 0.00 0.00 3.16
3750 4066 5.671463 TCCTATGATTCTACTCCCTCTGT 57.329 43.478 0.00 0.00 0.00 3.41
3751 4067 7.310361 GGAATTCCTATGATTCTACTCCCTCTG 60.310 44.444 17.73 0.00 0.00 3.35
3752 4068 6.728632 GGAATTCCTATGATTCTACTCCCTCT 59.271 42.308 17.73 0.00 0.00 3.69
3753 4069 6.728632 AGGAATTCCTATGATTCTACTCCCTC 59.271 42.308 25.99 0.00 46.48 4.30
3754 4070 6.638953 AGGAATTCCTATGATTCTACTCCCT 58.361 40.000 25.99 0.00 46.48 4.20
3755 4071 6.943899 AGGAATTCCTATGATTCTACTCCC 57.056 41.667 25.99 0.00 46.48 4.30
3756 4072 7.179338 TGCTAGGAATTCCTATGATTCTACTCC 59.821 40.741 30.13 11.39 46.71 3.85
3757 4073 8.128322 TGCTAGGAATTCCTATGATTCTACTC 57.872 38.462 30.13 11.92 46.71 2.59
3758 4074 8.497910 TTGCTAGGAATTCCTATGATTCTACT 57.502 34.615 30.13 7.13 46.71 2.57
3759 4075 8.994170 GTTTGCTAGGAATTCCTATGATTCTAC 58.006 37.037 30.13 18.38 46.71 2.59
3760 4076 8.938883 AGTTTGCTAGGAATTCCTATGATTCTA 58.061 33.333 30.13 11.32 46.71 2.10
3761 4077 7.810260 AGTTTGCTAGGAATTCCTATGATTCT 58.190 34.615 30.13 21.95 46.71 2.40
3762 4078 8.348507 CAAGTTTGCTAGGAATTCCTATGATTC 58.651 37.037 30.13 20.48 46.71 2.52
3763 4079 7.836183 ACAAGTTTGCTAGGAATTCCTATGATT 59.164 33.333 30.13 17.41 46.71 2.57
3764 4080 7.284034 CACAAGTTTGCTAGGAATTCCTATGAT 59.716 37.037 30.13 11.16 46.71 2.45
3765 4081 6.599244 CACAAGTTTGCTAGGAATTCCTATGA 59.401 38.462 30.13 18.54 46.71 2.15
3766 4082 6.375455 ACACAAGTTTGCTAGGAATTCCTATG 59.625 38.462 30.13 24.58 46.71 2.23
3767 4083 6.375455 CACACAAGTTTGCTAGGAATTCCTAT 59.625 38.462 30.13 14.67 46.71 2.57
3768 4084 5.705441 CACACAAGTTTGCTAGGAATTCCTA 59.295 40.000 28.56 28.56 46.48 2.94
3770 4086 4.798574 CACACAAGTTTGCTAGGAATTCC 58.201 43.478 17.31 17.31 0.00 3.01
3771 4087 4.229876 GCACACAAGTTTGCTAGGAATTC 58.770 43.478 0.00 0.00 35.74 2.17
3772 4088 3.005791 GGCACACAAGTTTGCTAGGAATT 59.994 43.478 10.71 0.00 38.85 2.17
3773 4089 2.558359 GGCACACAAGTTTGCTAGGAAT 59.442 45.455 10.71 0.00 38.85 3.01
3774 4090 1.953686 GGCACACAAGTTTGCTAGGAA 59.046 47.619 10.71 0.00 38.85 3.36
3775 4091 1.133945 TGGCACACAAGTTTGCTAGGA 60.134 47.619 10.71 0.00 38.85 2.94
3776 4092 1.317613 TGGCACACAAGTTTGCTAGG 58.682 50.000 10.71 0.00 38.85 3.02
3789 4105 1.063070 TAGGGGAACAAGGTGGCACA 61.063 55.000 20.82 0.00 0.00 4.57
3790 4106 0.111639 TTAGGGGAACAAGGTGGCAC 59.888 55.000 9.70 9.70 0.00 5.01
3791 4107 0.404040 CTTAGGGGAACAAGGTGGCA 59.596 55.000 0.00 0.00 0.00 4.92
3792 4108 0.404426 ACTTAGGGGAACAAGGTGGC 59.596 55.000 0.00 0.00 0.00 5.01
3793 4109 1.702957 TCACTTAGGGGAACAAGGTGG 59.297 52.381 0.00 0.00 0.00 4.61
3794 4110 2.637872 TCTCACTTAGGGGAACAAGGTG 59.362 50.000 0.00 0.00 0.00 4.00
3795 4111 2.907042 CTCTCACTTAGGGGAACAAGGT 59.093 50.000 0.00 0.00 0.00 3.50
3796 4112 3.618690 CTCTCACTTAGGGGAACAAGG 57.381 52.381 0.00 0.00 0.00 3.61
3804 4120 3.583086 TGTCCTTTTCCTCTCACTTAGGG 59.417 47.826 0.00 0.00 34.66 3.53
3805 4121 4.891992 TGTCCTTTTCCTCTCACTTAGG 57.108 45.455 0.00 0.00 35.26 2.69
3806 4122 8.097662 AGTATTTGTCCTTTTCCTCTCACTTAG 58.902 37.037 0.00 0.00 0.00 2.18
3807 4123 7.974504 AGTATTTGTCCTTTTCCTCTCACTTA 58.025 34.615 0.00 0.00 0.00 2.24
3808 4124 6.842676 AGTATTTGTCCTTTTCCTCTCACTT 58.157 36.000 0.00 0.00 0.00 3.16
3809 4125 6.441088 AGTATTTGTCCTTTTCCTCTCACT 57.559 37.500 0.00 0.00 0.00 3.41
3810 4126 7.511959 AAAGTATTTGTCCTTTTCCTCTCAC 57.488 36.000 0.00 0.00 36.60 3.51
3828 4144 9.683069 CAAGTGTTTTCATTTAGCTCAAAGTAT 57.317 29.630 0.00 0.00 0.00 2.12
3829 4145 8.682710 ACAAGTGTTTTCATTTAGCTCAAAGTA 58.317 29.630 0.00 0.00 0.00 2.24
3830 4146 7.547227 ACAAGTGTTTTCATTTAGCTCAAAGT 58.453 30.769 0.00 0.00 0.00 2.66
3831 4147 7.992180 ACAAGTGTTTTCATTTAGCTCAAAG 57.008 32.000 0.00 0.00 0.00 2.77
3832 4148 8.031864 TGAACAAGTGTTTTCATTTAGCTCAAA 58.968 29.630 0.00 0.00 38.56 2.69
3833 4149 7.542890 TGAACAAGTGTTTTCATTTAGCTCAA 58.457 30.769 0.00 0.00 38.56 3.02
3834 4150 7.066887 TCTGAACAAGTGTTTTCATTTAGCTCA 59.933 33.333 0.00 0.00 38.56 4.26
3835 4151 7.417612 TCTGAACAAGTGTTTTCATTTAGCTC 58.582 34.615 0.00 0.00 38.56 4.09
3836 4152 7.067494 ACTCTGAACAAGTGTTTTCATTTAGCT 59.933 33.333 0.00 0.00 38.56 3.32
3837 4153 7.196331 ACTCTGAACAAGTGTTTTCATTTAGC 58.804 34.615 0.00 0.00 38.56 3.09
3838 4154 9.869844 CTACTCTGAACAAGTGTTTTCATTTAG 57.130 33.333 0.00 0.00 38.56 1.85
3839 4155 9.391006 ACTACTCTGAACAAGTGTTTTCATTTA 57.609 29.630 0.00 0.00 38.56 1.40
3840 4156 8.281212 ACTACTCTGAACAAGTGTTTTCATTT 57.719 30.769 0.00 0.00 38.56 2.32
3841 4157 7.865706 ACTACTCTGAACAAGTGTTTTCATT 57.134 32.000 0.00 0.00 38.56 2.57
3842 4158 8.421784 TCTACTACTCTGAACAAGTGTTTTCAT 58.578 33.333 0.00 0.00 38.56 2.57
3843 4159 7.778083 TCTACTACTCTGAACAAGTGTTTTCA 58.222 34.615 0.00 0.00 38.56 2.69
3844 4160 8.644318 TTCTACTACTCTGAACAAGTGTTTTC 57.356 34.615 0.00 0.00 38.56 2.29
3847 4163 9.915629 CTTATTCTACTACTCTGAACAAGTGTT 57.084 33.333 0.00 0.00 41.64 3.32
3848 4164 9.298250 TCTTATTCTACTACTCTGAACAAGTGT 57.702 33.333 0.00 0.00 36.58 3.55
3876 4192 9.871238 GTTCATGGTACTAAATCTAGAGTTTCA 57.129 33.333 11.16 3.48 0.00 2.69
3877 4193 9.021863 CGTTCATGGTACTAAATCTAGAGTTTC 57.978 37.037 11.16 0.51 0.00 2.78
3878 4194 8.529476 ACGTTCATGGTACTAAATCTAGAGTTT 58.471 33.333 11.16 7.85 0.00 2.66
3879 4195 8.064336 ACGTTCATGGTACTAAATCTAGAGTT 57.936 34.615 10.68 10.68 0.00 3.01
3880 4196 7.338703 TGACGTTCATGGTACTAAATCTAGAGT 59.661 37.037 0.00 0.00 0.00 3.24
3881 4197 7.704271 TGACGTTCATGGTACTAAATCTAGAG 58.296 38.462 0.00 0.00 0.00 2.43
3882 4198 7.634671 TGACGTTCATGGTACTAAATCTAGA 57.365 36.000 0.00 0.00 0.00 2.43
3883 4199 8.188799 TCTTGACGTTCATGGTACTAAATCTAG 58.811 37.037 0.00 0.00 0.00 2.43
3884 4200 8.058667 TCTTGACGTTCATGGTACTAAATCTA 57.941 34.615 0.00 0.00 0.00 1.98
3885 4201 6.931838 TCTTGACGTTCATGGTACTAAATCT 58.068 36.000 0.00 0.00 0.00 2.40
3886 4202 7.033791 TCTCTTGACGTTCATGGTACTAAATC 58.966 38.462 0.00 0.00 0.00 2.17
3887 4203 6.931838 TCTCTTGACGTTCATGGTACTAAAT 58.068 36.000 0.00 0.00 0.00 1.40
3888 4204 6.335471 TCTCTTGACGTTCATGGTACTAAA 57.665 37.500 0.00 0.00 0.00 1.85
3889 4205 5.970317 TCTCTTGACGTTCATGGTACTAA 57.030 39.130 0.00 0.00 0.00 2.24
3890 4206 5.650703 TCATCTCTTGACGTTCATGGTACTA 59.349 40.000 0.00 0.00 0.00 1.82
3891 4207 4.462834 TCATCTCTTGACGTTCATGGTACT 59.537 41.667 0.00 0.00 0.00 2.73
3892 4208 4.744570 TCATCTCTTGACGTTCATGGTAC 58.255 43.478 0.00 0.00 0.00 3.34
3893 4209 5.400066 TTCATCTCTTGACGTTCATGGTA 57.600 39.130 0.00 0.00 32.84 3.25
3894 4210 3.961480 TCATCTCTTGACGTTCATGGT 57.039 42.857 0.00 0.00 0.00 3.55
3895 4211 4.633126 ACATTCATCTCTTGACGTTCATGG 59.367 41.667 0.00 0.00 32.84 3.66
3896 4212 5.791367 ACATTCATCTCTTGACGTTCATG 57.209 39.130 0.00 0.00 32.84 3.07
3897 4213 5.934043 TCAACATTCATCTCTTGACGTTCAT 59.066 36.000 0.00 0.00 32.84 2.57
3898 4214 5.296748 TCAACATTCATCTCTTGACGTTCA 58.703 37.500 0.00 0.00 32.84 3.18
3899 4215 5.845985 TCAACATTCATCTCTTGACGTTC 57.154 39.130 0.00 0.00 32.84 3.95
3900 4216 5.391310 GCATCAACATTCATCTCTTGACGTT 60.391 40.000 0.00 0.00 32.84 3.99
3901 4217 4.093998 GCATCAACATTCATCTCTTGACGT 59.906 41.667 0.00 0.00 32.84 4.34
3902 4218 4.495349 GGCATCAACATTCATCTCTTGACG 60.495 45.833 0.00 0.00 32.84 4.35
3903 4219 4.201990 GGGCATCAACATTCATCTCTTGAC 60.202 45.833 0.00 0.00 32.84 3.18
3904 4220 3.949754 GGGCATCAACATTCATCTCTTGA 59.050 43.478 0.00 0.00 0.00 3.02
3905 4221 3.697542 TGGGCATCAACATTCATCTCTTG 59.302 43.478 0.00 0.00 0.00 3.02
3906 4222 3.972133 TGGGCATCAACATTCATCTCTT 58.028 40.909 0.00 0.00 0.00 2.85
3907 4223 3.657398 TGGGCATCAACATTCATCTCT 57.343 42.857 0.00 0.00 0.00 3.10
3908 4224 7.555195 TGATATATGGGCATCAACATTCATCTC 59.445 37.037 0.00 0.00 0.00 2.75
3909 4225 7.407729 TGATATATGGGCATCAACATTCATCT 58.592 34.615 0.00 0.00 0.00 2.90
3910 4226 7.634671 TGATATATGGGCATCAACATTCATC 57.365 36.000 0.00 0.00 0.00 2.92
3911 4227 8.425237 TTTGATATATGGGCATCAACATTCAT 57.575 30.769 0.00 0.00 40.06 2.57
3912 4228 7.836479 TTTGATATATGGGCATCAACATTCA 57.164 32.000 0.00 0.00 40.06 2.57
3913 4229 7.277098 GCATTTGATATATGGGCATCAACATTC 59.723 37.037 0.00 0.00 40.06 2.67
3914 4230 7.038587 AGCATTTGATATATGGGCATCAACATT 60.039 33.333 0.00 0.00 40.06 2.71
3915 4231 6.439375 AGCATTTGATATATGGGCATCAACAT 59.561 34.615 0.00 0.00 40.06 2.71
3916 4232 5.776208 AGCATTTGATATATGGGCATCAACA 59.224 36.000 0.00 0.00 40.06 3.33
3917 4233 6.276832 AGCATTTGATATATGGGCATCAAC 57.723 37.500 0.00 0.00 40.06 3.18
3918 4234 7.404481 TCTAGCATTTGATATATGGGCATCAA 58.596 34.615 0.00 0.00 38.93 2.57
3919 4235 6.961042 TCTAGCATTTGATATATGGGCATCA 58.039 36.000 0.00 0.00 0.00 3.07
3920 4236 7.870509 TTCTAGCATTTGATATATGGGCATC 57.129 36.000 0.00 0.00 0.00 3.91
3921 4237 7.892241 AGTTTCTAGCATTTGATATATGGGCAT 59.108 33.333 0.00 0.00 0.00 4.40
3922 4238 7.233632 AGTTTCTAGCATTTGATATATGGGCA 58.766 34.615 0.00 0.00 0.00 5.36
3923 4239 7.609532 AGAGTTTCTAGCATTTGATATATGGGC 59.390 37.037 0.00 0.00 0.00 5.36
3924 4240 9.160496 GAGAGTTTCTAGCATTTGATATATGGG 57.840 37.037 0.00 0.00 0.00 4.00
3925 4241 9.941325 AGAGAGTTTCTAGCATTTGATATATGG 57.059 33.333 0.00 0.00 33.23 2.74
3958 4274 0.756903 ATACATGGCGGTCTGGTACC 59.243 55.000 4.43 4.43 45.77 3.34
3981 4297 2.313427 ATAGCCCGGGCCTCCAAAA 61.313 57.895 41.72 18.45 43.17 2.44
3985 4301 1.702022 TTTACATAGCCCGGGCCTCC 61.702 60.000 41.72 15.57 43.17 4.30
4047 4363 6.949352 TCTTTGAAGCAACATCTCTTCTTT 57.051 33.333 0.00 0.00 39.41 2.52
4048 4364 6.949352 TTCTTTGAAGCAACATCTCTTCTT 57.051 33.333 0.00 0.00 39.41 2.52
4049 4365 6.949352 TTTCTTTGAAGCAACATCTCTTCT 57.051 33.333 0.00 0.00 39.41 2.85
4050 4366 7.992180 TTTTTCTTTGAAGCAACATCTCTTC 57.008 32.000 0.00 0.00 39.20 2.87
4071 4387 5.829924 TGCCTCACATCTCTTCTTTCTTTTT 59.170 36.000 0.00 0.00 0.00 1.94
4072 4388 5.380043 TGCCTCACATCTCTTCTTTCTTTT 58.620 37.500 0.00 0.00 0.00 2.27
4073 4389 4.978099 TGCCTCACATCTCTTCTTTCTTT 58.022 39.130 0.00 0.00 0.00 2.52
4074 4390 4.565236 CCTGCCTCACATCTCTTCTTTCTT 60.565 45.833 0.00 0.00 0.00 2.52
4075 4391 3.055240 CCTGCCTCACATCTCTTCTTTCT 60.055 47.826 0.00 0.00 0.00 2.52
4076 4392 3.269178 CCTGCCTCACATCTCTTCTTTC 58.731 50.000 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.