Multiple sequence alignment - TraesCS3A01G224500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G224500 chr3A 100.000 3991 0 0 1 3991 420333119 420337109 0.000000e+00 7371
1 TraesCS3A01G224500 chr3A 93.750 96 5 1 1549 1643 637283436 637283341 4.160000e-30 143
2 TraesCS3A01G224500 chr3D 93.136 2127 76 20 1891 3991 311869793 311867711 0.000000e+00 3055
3 TraesCS3A01G224500 chr3D 89.096 752 52 10 804 1553 311870617 311869894 0.000000e+00 907
4 TraesCS3A01G224500 chr3D 82.427 239 30 11 393 627 343881708 343881478 8.750000e-47 198
5 TraesCS3A01G224500 chr3D 81.707 246 31 11 395 629 484120774 484121016 4.070000e-45 193
6 TraesCS3A01G224500 chr3D 88.889 117 13 0 14 130 311871064 311870948 1.160000e-30 145
7 TraesCS3A01G224500 chr3B 90.246 1220 62 16 1697 2894 409276779 409277963 0.000000e+00 1541
8 TraesCS3A01G224500 chr3B 93.633 801 30 6 892 1690 409275880 409276661 0.000000e+00 1177
9 TraesCS3A01G224500 chr3B 88.462 520 26 10 3371 3877 409279870 409280368 7.380000e-167 597
10 TraesCS3A01G224500 chr3B 90.157 447 31 6 2895 3341 409278027 409278460 1.610000e-158 569
11 TraesCS3A01G224500 chr3B 80.407 393 48 19 249 626 15073456 15073834 5.080000e-69 272
12 TraesCS3A01G224500 chr3B 93.939 132 4 2 3862 3991 409280390 409280519 3.150000e-46 196
13 TraesCS3A01G224500 chr3B 88.462 156 18 0 1737 1892 157762778 157762933 5.270000e-44 189
14 TraesCS3A01G224500 chr3B 87.662 154 16 2 1740 1892 736927165 736927316 4.100000e-40 176
15 TraesCS3A01G224500 chr6A 84.483 464 54 13 171 626 181018549 181019002 3.660000e-120 442
16 TraesCS3A01G224500 chr6A 81.338 284 35 11 352 629 161943798 161944069 8.690000e-52 215
17 TraesCS3A01G224500 chr7D 81.876 469 63 17 172 629 399451653 399451196 3.770000e-100 375
18 TraesCS3A01G224500 chr1D 84.556 259 29 7 378 629 25698923 25699177 3.080000e-61 246
19 TraesCS3A01G224500 chr7B 84.739 249 29 8 389 629 421689951 421690198 1.430000e-59 241
20 TraesCS3A01G224500 chr7B 85.965 171 14 6 1732 1893 309933458 309933627 1.470000e-39 174
21 TraesCS3A01G224500 chr5B 78.125 416 54 24 232 629 503741546 503741150 3.100000e-56 230
22 TraesCS3A01G224500 chr5B 89.024 164 15 2 1737 1897 556949074 556949237 2.430000e-47 200
23 TraesCS3A01G224500 chr5D 81.818 264 38 8 375 629 456684274 456684536 3.120000e-51 213
24 TraesCS3A01G224500 chr4D 88.957 163 9 1 1739 1892 334164553 334164391 4.070000e-45 193
25 TraesCS3A01G224500 chr4D 88.125 160 12 2 1740 1892 509826579 509826420 2.450000e-42 183
26 TraesCS3A01G224500 chr4D 87.097 155 19 1 1740 1893 127159150 127158996 1.470000e-39 174
27 TraesCS3A01G224500 chr4D 91.262 103 6 3 1533 1633 99662508 99662407 1.930000e-28 137
28 TraesCS3A01G224500 chr4B 86.550 171 13 2 1732 1893 499224494 499224663 3.170000e-41 180
29 TraesCS3A01G224500 chr2B 86.145 166 19 2 1734 1896 719529316 719529480 4.100000e-40 176
30 TraesCS3A01G224500 chr1B 95.699 93 3 1 1544 1635 151363651 151363743 8.940000e-32 148
31 TraesCS3A01G224500 chr1B 84.112 107 14 3 1 106 67055172 67055276 2.540000e-17 100
32 TraesCS3A01G224500 chr6B 94.681 94 4 1 1549 1641 512256620 512256527 1.160000e-30 145
33 TraesCS3A01G224500 chr6B 92.233 103 5 3 1550 1650 76149833 76149732 4.160000e-30 143
34 TraesCS3A01G224500 chr2D 96.591 88 2 1 1550 1636 75255102 75255015 1.160000e-30 145
35 TraesCS3A01G224500 chr2D 94.624 93 4 1 1544 1635 589522247 589522339 4.160000e-30 143
36 TraesCS3A01G224500 chr7A 88.496 113 9 4 1529 1637 666152252 666152364 2.500000e-27 134
37 TraesCS3A01G224500 chr1A 85.981 107 12 3 1 106 47212893 47212997 1.170000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G224500 chr3A 420333119 420337109 3990 False 7371 7371 100.000000 1 3991 1 chr3A.!!$F1 3990
1 TraesCS3A01G224500 chr3D 311867711 311871064 3353 True 1369 3055 90.373667 14 3991 3 chr3D.!!$R2 3977
2 TraesCS3A01G224500 chr3B 409275880 409280519 4639 False 816 1541 91.287400 892 3991 5 chr3B.!!$F4 3099

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 488 0.108585 TGCCTTCTTTTCTGGACGCT 59.891 50.0 0.00 0.0 0.0 5.07 F
684 1001 0.178301 GGGGTTTCGATCCTCCAGTC 59.822 60.0 7.03 0.0 0.0 3.51 F
1455 1774 0.179119 CGAGTTTAGCCCCGGTAGTG 60.179 60.0 0.00 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 2348 0.382515 CACAGCTAGGAGCCTACGAC 59.617 60.000 0.0 0.0 43.77 4.34 R
2031 2472 1.135527 CGGACTGAGGTTATGCGGTTA 59.864 52.381 0.0 0.0 0.00 2.85 R
3134 3654 0.108585 TGGCAGGTCACTTCTTCCAC 59.891 55.000 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 454 6.044512 ACATCCGTCTCGCAAAATAATAAC 57.955 37.500 0.00 0.00 0.00 1.89
142 459 4.026407 GTCTCGCAAAATAATAACCGTGC 58.974 43.478 0.00 0.00 0.00 5.34
161 478 3.531934 GCCATAGCAATTGCCTTCTTT 57.468 42.857 26.45 9.76 43.38 2.52
162 479 3.865446 GCCATAGCAATTGCCTTCTTTT 58.135 40.909 26.45 9.01 43.38 2.27
163 480 3.867493 GCCATAGCAATTGCCTTCTTTTC 59.133 43.478 26.45 5.41 43.38 2.29
164 481 4.382362 GCCATAGCAATTGCCTTCTTTTCT 60.382 41.667 26.45 7.51 43.38 2.52
165 482 5.107133 CCATAGCAATTGCCTTCTTTTCTG 58.893 41.667 26.45 9.04 43.38 3.02
166 483 3.672767 AGCAATTGCCTTCTTTTCTGG 57.327 42.857 26.45 0.00 43.38 3.86
167 484 3.233507 AGCAATTGCCTTCTTTTCTGGA 58.766 40.909 26.45 0.00 43.38 3.86
168 485 3.006217 AGCAATTGCCTTCTTTTCTGGAC 59.994 43.478 26.45 0.00 43.38 4.02
169 486 3.568538 CAATTGCCTTCTTTTCTGGACG 58.431 45.455 0.00 0.00 0.00 4.79
170 487 0.951558 TTGCCTTCTTTTCTGGACGC 59.048 50.000 0.00 0.00 0.00 5.19
171 488 0.108585 TGCCTTCTTTTCTGGACGCT 59.891 50.000 0.00 0.00 0.00 5.07
172 489 0.519077 GCCTTCTTTTCTGGACGCTG 59.481 55.000 0.00 0.00 0.00 5.18
173 490 0.519077 CCTTCTTTTCTGGACGCTGC 59.481 55.000 0.00 0.00 0.00 5.25
174 491 1.517242 CTTCTTTTCTGGACGCTGCT 58.483 50.000 0.00 0.00 0.00 4.24
175 492 2.612972 CCTTCTTTTCTGGACGCTGCTA 60.613 50.000 0.00 0.00 0.00 3.49
176 493 3.265791 CTTCTTTTCTGGACGCTGCTAT 58.734 45.455 0.00 0.00 0.00 2.97
177 494 4.433615 CTTCTTTTCTGGACGCTGCTATA 58.566 43.478 0.00 0.00 0.00 1.31
178 495 4.672587 TCTTTTCTGGACGCTGCTATAT 57.327 40.909 0.00 0.00 0.00 0.86
179 496 4.371786 TCTTTTCTGGACGCTGCTATATG 58.628 43.478 0.00 0.00 0.00 1.78
180 497 3.819564 TTTCTGGACGCTGCTATATGT 57.180 42.857 0.00 0.00 0.00 2.29
181 498 3.371102 TTCTGGACGCTGCTATATGTC 57.629 47.619 0.00 0.00 0.00 3.06
182 499 1.266989 TCTGGACGCTGCTATATGTCG 59.733 52.381 0.00 0.00 32.17 4.35
183 500 0.318699 TGGACGCTGCTATATGTCGC 60.319 55.000 0.00 0.00 32.17 5.19
185 502 4.228451 CGCTGCTATATGTCGCGT 57.772 55.556 5.77 0.00 39.07 6.01
186 503 2.506544 CGCTGCTATATGTCGCGTT 58.493 52.632 5.77 0.00 39.07 4.84
187 504 0.431233 CGCTGCTATATGTCGCGTTC 59.569 55.000 5.77 1.06 39.07 3.95
188 505 1.487482 GCTGCTATATGTCGCGTTCA 58.513 50.000 5.77 7.65 0.00 3.18
189 506 1.453524 GCTGCTATATGTCGCGTTCAG 59.546 52.381 5.77 4.41 0.00 3.02
190 507 1.453524 CTGCTATATGTCGCGTTCAGC 59.546 52.381 5.77 8.34 43.95 4.26
191 508 0.784778 GCTATATGTCGCGTTCAGCC 59.215 55.000 5.77 0.00 44.76 4.85
192 509 1.868109 GCTATATGTCGCGTTCAGCCA 60.868 52.381 5.77 0.00 44.76 4.75
193 510 2.054363 CTATATGTCGCGTTCAGCCAG 58.946 52.381 5.77 2.27 44.76 4.85
194 511 1.154205 ATATGTCGCGTTCAGCCAGC 61.154 55.000 5.77 0.00 44.76 4.85
195 512 2.499756 TATGTCGCGTTCAGCCAGCA 62.500 55.000 5.77 0.00 44.76 4.41
196 513 4.077188 GTCGCGTTCAGCCAGCAC 62.077 66.667 5.77 0.00 44.76 4.40
197 514 4.600576 TCGCGTTCAGCCAGCACA 62.601 61.111 5.77 0.00 44.76 4.57
198 515 4.374702 CGCGTTCAGCCAGCACAC 62.375 66.667 0.00 0.00 44.76 3.82
199 516 4.374702 GCGTTCAGCCAGCACACG 62.375 66.667 4.47 4.47 40.81 4.49
200 517 4.374702 CGTTCAGCCAGCACACGC 62.375 66.667 0.00 0.00 38.99 5.34
201 518 4.374702 GTTCAGCCAGCACACGCG 62.375 66.667 3.53 3.53 45.49 6.01
222 539 2.742372 CACTCGCGTTGGGGGAAG 60.742 66.667 5.77 0.00 37.13 3.46
223 540 3.239253 ACTCGCGTTGGGGGAAGT 61.239 61.111 5.77 0.00 37.13 3.01
224 541 2.434359 CTCGCGTTGGGGGAAGTC 60.434 66.667 5.77 0.00 37.13 3.01
225 542 3.952628 CTCGCGTTGGGGGAAGTCC 62.953 68.421 5.77 0.00 37.13 3.85
265 582 4.335647 CGGGAGCCACAGCCTGTT 62.336 66.667 0.00 0.00 41.25 3.16
266 583 2.116125 GGGAGCCACAGCCTGTTT 59.884 61.111 0.00 0.00 41.25 2.83
267 584 1.531602 GGGAGCCACAGCCTGTTTT 60.532 57.895 0.00 0.00 41.25 2.43
268 585 1.115326 GGGAGCCACAGCCTGTTTTT 61.115 55.000 0.00 0.00 41.25 1.94
469 786 9.693739 TGAACCAAATATATGTTCAACAGGTAT 57.306 29.630 12.37 0.00 43.76 2.73
546 863 9.676195 TGTTGAACAAGTATATGACAAATGTTG 57.324 29.630 0.00 0.00 34.02 3.33
547 864 9.891828 GTTGAACAAGTATATGACAAATGTTGA 57.108 29.630 0.00 0.00 34.02 3.18
549 866 9.891828 TGAACAAGTATATGACAAATGTTGAAC 57.108 29.630 0.00 0.00 34.02 3.18
550 867 9.891828 GAACAAGTATATGACAAATGTTGAACA 57.108 29.630 0.00 0.00 34.02 3.18
552 869 9.897744 ACAAGTATATGACAAATGTTGAACAAG 57.102 29.630 0.62 0.00 0.00 3.16
553 870 9.897744 CAAGTATATGACAAATGTTGAACAAGT 57.102 29.630 0.62 1.40 0.00 3.16
574 891 8.870160 CAAGTATTGGAAAATGTTGAACAAGA 57.130 30.769 0.62 0.00 43.94 3.02
575 892 9.311916 CAAGTATTGGAAAATGTTGAACAAGAA 57.688 29.630 0.62 0.00 43.94 2.52
580 897 8.783833 TTGGAAAATGTTGAACAAGAATTTGA 57.216 26.923 0.62 0.00 37.73 2.69
581 898 8.783833 TGGAAAATGTTGAACAAGAATTTGAA 57.216 26.923 0.62 0.00 37.73 2.69
582 899 9.224267 TGGAAAATGTTGAACAAGAATTTGAAA 57.776 25.926 0.62 0.00 37.73 2.69
589 906 9.823098 TGTTGAACAAGAATTTGAAAAATGTTG 57.177 25.926 0.00 4.76 37.73 3.33
608 925 9.934190 AAATGTTGAACAAGTATTTGAAAATGC 57.066 25.926 0.62 0.00 37.73 3.56
609 926 8.891671 ATGTTGAACAAGTATTTGAAAATGCT 57.108 26.923 0.62 1.07 42.05 3.79
610 927 8.129161 TGTTGAACAAGTATTTGAAAATGCTG 57.871 30.769 4.81 5.04 39.86 4.41
611 928 7.978414 TGTTGAACAAGTATTTGAAAATGCTGA 59.022 29.630 4.81 0.00 39.86 4.26
612 929 8.816144 GTTGAACAAGTATTTGAAAATGCTGAA 58.184 29.630 4.81 0.00 39.86 3.02
613 930 9.545105 TTGAACAAGTATTTGAAAATGCTGAAT 57.455 25.926 4.81 0.00 39.86 2.57
631 948 8.925161 TGCTGAATAAGTATTTAAAATGTGCC 57.075 30.769 0.00 0.00 0.00 5.01
632 949 8.526978 TGCTGAATAAGTATTTAAAATGTGCCA 58.473 29.630 0.00 0.00 0.00 4.92
633 950 9.364989 GCTGAATAAGTATTTAAAATGTGCCAA 57.635 29.630 0.00 0.00 0.00 4.52
635 952 9.364989 TGAATAAGTATTTAAAATGTGCCAAGC 57.635 29.630 0.00 0.00 0.00 4.01
636 953 9.586435 GAATAAGTATTTAAAATGTGCCAAGCT 57.414 29.630 0.00 0.00 0.00 3.74
639 956 7.703058 AGTATTTAAAATGTGCCAAGCTACT 57.297 32.000 0.00 0.00 0.00 2.57
640 957 8.122472 AGTATTTAAAATGTGCCAAGCTACTT 57.878 30.769 0.00 0.00 0.00 2.24
641 958 9.238368 AGTATTTAAAATGTGCCAAGCTACTTA 57.762 29.630 0.00 0.00 0.00 2.24
642 959 9.503427 GTATTTAAAATGTGCCAAGCTACTTAG 57.497 33.333 0.00 0.00 0.00 2.18
656 973 1.579698 ACTTAGCAGCTGCATCATCG 58.420 50.000 38.24 21.65 45.16 3.84
657 974 0.235144 CTTAGCAGCTGCATCATCGC 59.765 55.000 38.24 11.06 45.16 4.58
658 975 1.493134 TTAGCAGCTGCATCATCGCG 61.493 55.000 38.24 0.00 45.16 5.87
659 976 4.309347 GCAGCTGCATCATCGCGG 62.309 66.667 33.36 0.00 41.59 6.46
660 977 2.586914 CAGCTGCATCATCGCGGA 60.587 61.111 6.13 0.00 41.00 5.54
661 978 2.279985 AGCTGCATCATCGCGGAG 60.280 61.111 6.13 0.00 41.00 4.63
662 979 2.279717 GCTGCATCATCGCGGAGA 60.280 61.111 6.13 4.86 41.00 3.71
663 980 2.593134 GCTGCATCATCGCGGAGAC 61.593 63.158 6.13 0.00 41.00 3.36
664 981 1.953138 CTGCATCATCGCGGAGACC 60.953 63.158 6.13 0.54 41.00 3.85
674 991 3.376078 CGGAGACCGGGGTTTCGA 61.376 66.667 6.32 0.00 44.15 3.71
675 992 2.718073 CGGAGACCGGGGTTTCGAT 61.718 63.158 6.32 0.00 44.15 3.59
676 993 1.143401 GGAGACCGGGGTTTCGATC 59.857 63.158 6.32 0.00 30.99 3.69
677 994 1.143401 GAGACCGGGGTTTCGATCC 59.857 63.158 6.32 0.00 0.00 3.36
678 995 1.305887 AGACCGGGGTTTCGATCCT 60.306 57.895 6.32 0.00 0.00 3.24
679 996 1.143401 GACCGGGGTTTCGATCCTC 59.857 63.158 6.32 2.64 0.00 3.71
680 997 2.307611 GACCGGGGTTTCGATCCTCC 62.308 65.000 6.32 0.00 0.00 4.30
681 998 2.363975 CCGGGGTTTCGATCCTCCA 61.364 63.158 0.00 0.00 0.00 3.86
682 999 1.144057 CGGGGTTTCGATCCTCCAG 59.856 63.158 7.03 0.00 0.00 3.86
683 1000 1.614241 CGGGGTTTCGATCCTCCAGT 61.614 60.000 7.03 0.00 0.00 4.00
684 1001 0.178301 GGGGTTTCGATCCTCCAGTC 59.822 60.000 7.03 0.00 0.00 3.51
685 1002 1.196012 GGGTTTCGATCCTCCAGTCT 58.804 55.000 7.03 0.00 0.00 3.24
686 1003 1.555533 GGGTTTCGATCCTCCAGTCTT 59.444 52.381 7.03 0.00 0.00 3.01
687 1004 2.418884 GGGTTTCGATCCTCCAGTCTTC 60.419 54.545 7.03 0.00 0.00 2.87
688 1005 2.418884 GGTTTCGATCCTCCAGTCTTCC 60.419 54.545 0.00 0.00 0.00 3.46
689 1006 2.231716 TTCGATCCTCCAGTCTTCCA 57.768 50.000 0.00 0.00 0.00 3.53
690 1007 2.461300 TCGATCCTCCAGTCTTCCAT 57.539 50.000 0.00 0.00 0.00 3.41
691 1008 2.034878 TCGATCCTCCAGTCTTCCATG 58.965 52.381 0.00 0.00 0.00 3.66
692 1009 1.759445 CGATCCTCCAGTCTTCCATGT 59.241 52.381 0.00 0.00 0.00 3.21
693 1010 2.169352 CGATCCTCCAGTCTTCCATGTT 59.831 50.000 0.00 0.00 0.00 2.71
694 1011 3.369892 CGATCCTCCAGTCTTCCATGTTT 60.370 47.826 0.00 0.00 0.00 2.83
695 1012 4.593956 GATCCTCCAGTCTTCCATGTTTT 58.406 43.478 0.00 0.00 0.00 2.43
696 1013 4.453480 TCCTCCAGTCTTCCATGTTTTT 57.547 40.909 0.00 0.00 0.00 1.94
697 1014 4.398319 TCCTCCAGTCTTCCATGTTTTTC 58.602 43.478 0.00 0.00 0.00 2.29
698 1015 4.104738 TCCTCCAGTCTTCCATGTTTTTCT 59.895 41.667 0.00 0.00 0.00 2.52
699 1016 4.457257 CCTCCAGTCTTCCATGTTTTTCTC 59.543 45.833 0.00 0.00 0.00 2.87
700 1017 5.310409 TCCAGTCTTCCATGTTTTTCTCT 57.690 39.130 0.00 0.00 0.00 3.10
701 1018 5.065914 TCCAGTCTTCCATGTTTTTCTCTG 58.934 41.667 0.00 0.00 0.00 3.35
702 1019 4.823989 CCAGTCTTCCATGTTTTTCTCTGT 59.176 41.667 0.00 0.00 0.00 3.41
703 1020 5.300286 CCAGTCTTCCATGTTTTTCTCTGTT 59.700 40.000 0.00 0.00 0.00 3.16
704 1021 6.486657 CCAGTCTTCCATGTTTTTCTCTGTTA 59.513 38.462 0.00 0.00 0.00 2.41
705 1022 7.175641 CCAGTCTTCCATGTTTTTCTCTGTTAT 59.824 37.037 0.00 0.00 0.00 1.89
706 1023 8.571336 CAGTCTTCCATGTTTTTCTCTGTTATT 58.429 33.333 0.00 0.00 0.00 1.40
707 1024 9.136323 AGTCTTCCATGTTTTTCTCTGTTATTT 57.864 29.630 0.00 0.00 0.00 1.40
708 1025 9.750125 GTCTTCCATGTTTTTCTCTGTTATTTT 57.250 29.630 0.00 0.00 0.00 1.82
709 1026 9.748708 TCTTCCATGTTTTTCTCTGTTATTTTG 57.251 29.630 0.00 0.00 0.00 2.44
710 1027 9.748708 CTTCCATGTTTTTCTCTGTTATTTTGA 57.251 29.630 0.00 0.00 0.00 2.69
712 1029 9.748708 TCCATGTTTTTCTCTGTTATTTTGAAG 57.251 29.630 0.00 0.00 0.00 3.02
713 1030 9.533253 CCATGTTTTTCTCTGTTATTTTGAAGT 57.467 29.630 0.00 0.00 0.00 3.01
718 1035 8.856490 TTTTCTCTGTTATTTTGAAGTCAAGC 57.144 30.769 0.00 0.00 37.15 4.01
719 1036 7.566760 TTCTCTGTTATTTTGAAGTCAAGCA 57.433 32.000 0.00 0.00 37.15 3.91
720 1037 7.566760 TCTCTGTTATTTTGAAGTCAAGCAA 57.433 32.000 0.00 0.00 37.15 3.91
721 1038 7.995289 TCTCTGTTATTTTGAAGTCAAGCAAA 58.005 30.769 0.00 0.00 37.15 3.68
722 1039 8.465999 TCTCTGTTATTTTGAAGTCAAGCAAAA 58.534 29.630 0.00 0.00 44.92 2.44
723 1040 8.633075 TCTGTTATTTTGAAGTCAAGCAAAAG 57.367 30.769 0.00 0.00 44.30 2.27
724 1041 8.465999 TCTGTTATTTTGAAGTCAAGCAAAAGA 58.534 29.630 0.00 0.00 44.30 2.52
725 1042 8.994429 TGTTATTTTGAAGTCAAGCAAAAGAA 57.006 26.923 0.00 0.00 44.30 2.52
726 1043 9.429359 TGTTATTTTGAAGTCAAGCAAAAGAAA 57.571 25.926 0.00 0.00 42.86 2.52
730 1047 6.907206 TTGAAGTCAAGCAAAAGAAAATGG 57.093 33.333 0.00 0.00 0.00 3.16
731 1048 6.219417 TGAAGTCAAGCAAAAGAAAATGGA 57.781 33.333 0.00 0.00 0.00 3.41
732 1049 6.042143 TGAAGTCAAGCAAAAGAAAATGGAC 58.958 36.000 0.00 0.00 0.00 4.02
733 1050 4.948847 AGTCAAGCAAAAGAAAATGGACC 58.051 39.130 0.00 0.00 0.00 4.46
734 1051 4.651045 AGTCAAGCAAAAGAAAATGGACCT 59.349 37.500 0.00 0.00 0.00 3.85
735 1052 4.746611 GTCAAGCAAAAGAAAATGGACCTG 59.253 41.667 0.00 0.00 0.00 4.00
736 1053 3.391506 AGCAAAAGAAAATGGACCTGC 57.608 42.857 0.00 0.00 0.00 4.85
737 1054 2.037641 AGCAAAAGAAAATGGACCTGCC 59.962 45.455 0.00 0.00 37.10 4.85
738 1055 2.871637 GCAAAAGAAAATGGACCTGCCC 60.872 50.000 0.00 0.00 34.97 5.36
739 1056 1.256812 AAAGAAAATGGACCTGCCCG 58.743 50.000 0.00 0.00 34.97 6.13
740 1057 0.404040 AAGAAAATGGACCTGCCCGA 59.596 50.000 0.00 0.00 34.97 5.14
741 1058 0.625849 AGAAAATGGACCTGCCCGAT 59.374 50.000 0.00 0.00 34.97 4.18
742 1059 1.005924 AGAAAATGGACCTGCCCGATT 59.994 47.619 0.00 0.00 34.97 3.34
743 1060 1.405463 GAAAATGGACCTGCCCGATTC 59.595 52.381 0.00 0.00 34.97 2.52
744 1061 0.748005 AAATGGACCTGCCCGATTCG 60.748 55.000 0.00 0.00 34.97 3.34
745 1062 1.910580 AATGGACCTGCCCGATTCGT 61.911 55.000 5.20 0.00 34.97 3.85
746 1063 1.046472 ATGGACCTGCCCGATTCGTA 61.046 55.000 5.20 0.00 34.97 3.43
747 1064 1.067582 GGACCTGCCCGATTCGTAG 59.932 63.158 5.20 0.82 0.00 3.51
748 1065 1.067582 GACCTGCCCGATTCGTAGG 59.932 63.158 15.47 15.47 34.70 3.18
753 1070 3.533720 CCCGATTCGTAGGGCAGA 58.466 61.111 5.20 0.00 41.34 4.26
754 1071 1.364171 CCCGATTCGTAGGGCAGAG 59.636 63.158 5.20 0.00 41.34 3.35
755 1072 1.364171 CCGATTCGTAGGGCAGAGG 59.636 63.158 5.20 0.00 0.00 3.69
756 1073 1.107538 CCGATTCGTAGGGCAGAGGA 61.108 60.000 5.20 0.00 0.00 3.71
757 1074 0.744874 CGATTCGTAGGGCAGAGGAA 59.255 55.000 0.00 0.00 0.00 3.36
758 1075 1.269309 CGATTCGTAGGGCAGAGGAAG 60.269 57.143 0.00 0.00 0.00 3.46
759 1076 2.032620 GATTCGTAGGGCAGAGGAAGA 58.967 52.381 0.00 0.00 0.00 2.87
760 1077 2.160721 TTCGTAGGGCAGAGGAAGAT 57.839 50.000 0.00 0.00 0.00 2.40
761 1078 2.160721 TCGTAGGGCAGAGGAAGATT 57.839 50.000 0.00 0.00 0.00 2.40
762 1079 2.032620 TCGTAGGGCAGAGGAAGATTC 58.967 52.381 0.00 0.00 0.00 2.52
772 1089 4.126524 GAAGATTCCTTCGGCGGG 57.873 61.111 7.21 0.32 39.36 6.13
773 1090 1.520666 GAAGATTCCTTCGGCGGGA 59.479 57.895 7.21 3.42 39.36 5.14
774 1091 0.530870 GAAGATTCCTTCGGCGGGAG 60.531 60.000 7.21 5.59 39.36 4.30
775 1092 1.972660 AAGATTCCTTCGGCGGGAGG 61.973 60.000 19.71 19.71 34.06 4.30
776 1093 2.365105 ATTCCTTCGGCGGGAGGA 60.365 61.111 22.93 22.93 34.06 3.71
777 1094 2.370647 GATTCCTTCGGCGGGAGGAG 62.371 65.000 24.49 9.57 34.06 3.69
781 1098 4.452251 TTCGGCGGGAGGAGGCTA 62.452 66.667 7.21 0.00 0.00 3.93
782 1099 3.751049 TTCGGCGGGAGGAGGCTAT 62.751 63.158 7.21 0.00 0.00 2.97
783 1100 3.686045 CGGCGGGAGGAGGCTATC 61.686 72.222 0.00 0.00 0.00 2.08
795 1112 4.803098 GGAGGCTATCCTATCGCTTAAA 57.197 45.455 0.00 0.00 44.46 1.52
796 1113 4.749976 GGAGGCTATCCTATCGCTTAAAG 58.250 47.826 0.00 0.00 44.46 1.85
797 1114 4.177783 GAGGCTATCCTATCGCTTAAAGC 58.822 47.826 0.00 0.00 44.46 3.51
813 1130 5.848559 GCTTAAAGCGATAAATAGCTCTTGC 59.151 40.000 0.00 0.00 43.78 4.01
814 1131 4.458951 AAAGCGATAAATAGCTCTTGCG 57.541 40.909 0.00 0.00 43.78 4.85
815 1132 2.408050 AGCGATAAATAGCTCTTGCGG 58.592 47.619 0.00 0.00 45.42 5.69
816 1133 2.135933 GCGATAAATAGCTCTTGCGGT 58.864 47.619 0.00 0.00 45.42 5.68
817 1134 2.155924 GCGATAAATAGCTCTTGCGGTC 59.844 50.000 0.00 0.00 45.42 4.79
818 1135 3.643763 CGATAAATAGCTCTTGCGGTCT 58.356 45.455 0.00 0.00 45.42 3.85
819 1136 4.051922 CGATAAATAGCTCTTGCGGTCTT 58.948 43.478 0.00 0.00 45.42 3.01
820 1137 4.508124 CGATAAATAGCTCTTGCGGTCTTT 59.492 41.667 0.00 0.00 45.42 2.52
846 1163 1.383523 GGCCAGCCTAGCTAAACTTG 58.616 55.000 0.00 0.00 36.40 3.16
886 1203 1.814772 CTTCGGCCCAACCATTGCAA 61.815 55.000 0.00 0.00 39.03 4.08
887 1204 1.814772 TTCGGCCCAACCATTGCAAG 61.815 55.000 4.94 0.00 39.03 4.01
888 1205 2.046988 GGCCCAACCATTGCAAGC 60.047 61.111 4.94 0.07 38.86 4.01
890 1207 1.375013 GCCCAACCATTGCAAGCAG 60.375 57.895 4.94 0.00 0.00 4.24
891 1208 1.375013 CCCAACCATTGCAAGCAGC 60.375 57.895 4.94 0.00 45.96 5.25
936 1253 1.588597 GCCAGAGCCCTCTTTTTGC 59.411 57.895 0.00 0.00 37.98 3.68
1104 1423 2.750237 GGAGCGGCGGAAATGGTT 60.750 61.111 9.78 0.00 0.00 3.67
1105 1424 2.761195 GGAGCGGCGGAAATGGTTC 61.761 63.158 9.78 0.00 0.00 3.62
1224 1543 1.452833 GTGCCTGGCCAAGATCCTC 60.453 63.158 17.53 0.00 0.00 3.71
1225 1544 2.203126 GCCTGGCCAAGATCCTCG 60.203 66.667 7.01 0.00 0.00 4.63
1242 1561 4.043200 GCCAAGCAAGGTGCCGAC 62.043 66.667 0.00 0.00 46.52 4.79
1253 1572 1.079057 GTGCCGACCCTCTCTTTCC 60.079 63.158 0.00 0.00 0.00 3.13
1254 1573 1.535444 TGCCGACCCTCTCTTTCCA 60.535 57.895 0.00 0.00 0.00 3.53
1257 1576 0.905357 CCGACCCTCTCTTTCCACAT 59.095 55.000 0.00 0.00 0.00 3.21
1263 1582 3.331889 ACCCTCTCTTTCCACATCATTGT 59.668 43.478 0.00 0.00 36.15 2.71
1305 1624 3.981071 TGAGTGTGGTCTTATTGGAGG 57.019 47.619 0.00 0.00 0.00 4.30
1310 1629 2.496070 TGTGGTCTTATTGGAGGTCGAG 59.504 50.000 0.00 0.00 0.00 4.04
1354 1673 0.808755 GAAATGGATCCGGTGCGTTT 59.191 50.000 7.39 12.91 39.69 3.60
1414 1733 5.088739 GCTAACTTGAATGGTCAAATCACG 58.911 41.667 0.00 0.00 43.18 4.35
1454 1773 1.953231 GCGAGTTTAGCCCCGGTAGT 61.953 60.000 0.00 0.00 0.00 2.73
1455 1774 0.179119 CGAGTTTAGCCCCGGTAGTG 60.179 60.000 0.00 0.00 0.00 2.74
1561 1882 6.881067 TCTTAGTGTCCTACTACCTCTGTA 57.119 41.667 0.00 0.00 41.48 2.74
1562 1883 7.262990 TCTTAGTGTCCTACTACCTCTGTAA 57.737 40.000 0.00 0.00 41.48 2.41
1563 1884 7.693132 TCTTAGTGTCCTACTACCTCTGTAAA 58.307 38.462 0.00 0.00 41.48 2.01
1649 1970 7.074653 AGGGAGTACTTGTGAAATTAGTCAA 57.925 36.000 0.00 0.00 0.00 3.18
1682 2003 1.978617 CATTGACAGGTGGTGGGGC 60.979 63.158 0.00 0.00 0.00 5.80
1690 2011 2.360600 GTGGTGGGGCGCAACATA 60.361 61.111 25.59 0.00 0.00 2.29
1691 2012 2.045438 TGGTGGGGCGCAACATAG 60.045 61.111 19.21 0.00 0.00 2.23
1693 2014 1.222387 GGTGGGGCGCAACATAGTA 59.778 57.895 15.43 0.00 0.00 1.82
1694 2015 0.393267 GGTGGGGCGCAACATAGTAA 60.393 55.000 15.43 0.00 0.00 2.24
1753 2185 1.849977 AGAAGTACTCCCTCCGTTCC 58.150 55.000 0.00 0.00 0.00 3.62
1757 2189 3.015675 AGTACTCCCTCCGTTCCTAAG 57.984 52.381 0.00 0.00 0.00 2.18
1774 2206 8.271487 CGTTCCTAAGTGTAAGTGTTTTTAGAC 58.729 37.037 0.00 0.00 0.00 2.59
1895 2336 1.713297 ACAAACGGAGGGAGTACTGT 58.287 50.000 0.00 0.00 0.00 3.55
1907 2348 2.464865 GAGTACTGTTCTAGCGCATGG 58.535 52.381 11.47 0.00 0.00 3.66
1927 2368 1.066587 CGTAGGCTCCTAGCTGTGC 59.933 63.158 0.00 0.00 41.99 4.57
2031 2472 4.501071 AGCATTCGGTATTGTAAGTTCGT 58.499 39.130 0.00 0.00 0.00 3.85
2131 2572 4.331968 ACAAGGTGTTGAAGTTCACTCAA 58.668 39.130 4.68 0.00 37.10 3.02
2304 2745 2.025898 TGTGCCGACCGAGTATGATTA 58.974 47.619 0.00 0.00 0.00 1.75
2329 2770 2.479566 TGGCCAGCACTAGAAAGAAG 57.520 50.000 0.00 0.00 0.00 2.85
2360 2801 9.555727 TTGTTGATGTTATAGTTAAGGCTATCC 57.444 33.333 0.00 0.00 34.00 2.59
2410 2851 5.067954 GTGGCTTCCTCTAACAGGTAAAAA 58.932 41.667 0.00 0.00 43.95 1.94
2527 2978 4.990543 GCCAAAGGCTTTGATACAAAAC 57.009 40.909 35.18 13.62 46.69 2.43
2568 3019 4.634199 TGTACTGCTTTTACTGGTGTACC 58.366 43.478 0.00 0.00 0.00 3.34
2757 3209 6.116126 GCTGGATTGAGTCATTTAGTAGGTT 58.884 40.000 0.00 0.00 0.00 3.50
2758 3210 6.599638 GCTGGATTGAGTCATTTAGTAGGTTT 59.400 38.462 0.00 0.00 0.00 3.27
2759 3211 7.121315 GCTGGATTGAGTCATTTAGTAGGTTTT 59.879 37.037 0.00 0.00 0.00 2.43
2760 3212 8.561738 TGGATTGAGTCATTTAGTAGGTTTTC 57.438 34.615 0.00 0.00 0.00 2.29
2761 3213 8.160765 TGGATTGAGTCATTTAGTAGGTTTTCA 58.839 33.333 0.00 0.00 0.00 2.69
2805 3257 6.149973 TGTGTCCATTGATTCTTGATTGACTC 59.850 38.462 0.00 0.00 0.00 3.36
2806 3258 6.373774 GTGTCCATTGATTCTTGATTGACTCT 59.626 38.462 0.00 0.00 0.00 3.24
2893 3413 4.379499 GCCATTGCTCCTACAAACAACTAC 60.379 45.833 0.00 0.00 32.27 2.73
2955 3475 0.331278 AATTCCCAATCCAGGACGCA 59.669 50.000 0.00 0.00 31.50 5.24
2976 3496 3.887621 TCAAAACTAGGATCACCCTCG 57.112 47.619 0.00 0.00 43.31 4.63
3068 3588 3.607422 TTCTCACATTCACTTTGTGCG 57.393 42.857 0.00 0.00 43.29 5.34
3081 3601 1.919918 TTGTGCGGCAAAGTTGAAAG 58.080 45.000 3.23 0.00 33.53 2.62
3082 3602 1.098869 TGTGCGGCAAAGTTGAAAGA 58.901 45.000 3.23 0.00 0.00 2.52
3083 3603 1.680735 TGTGCGGCAAAGTTGAAAGAT 59.319 42.857 3.23 0.00 0.00 2.40
3104 3624 9.950680 AAAGATACACACTATTCTTTTGTTGTG 57.049 29.630 0.00 0.00 0.00 3.33
3134 3654 7.325821 TGCATTCTATTTTCTTGCTTTTGTACG 59.674 33.333 0.00 0.00 34.47 3.67
3215 3735 8.648557 TGTTATCATGACACTTTATACTGCTC 57.351 34.615 0.00 0.00 0.00 4.26
3402 5306 4.753233 CAGTAGACTGTTGCTGATAGCTT 58.247 43.478 0.00 0.00 39.45 3.74
3436 5348 0.868406 GGGACGTCTGCTTCTGTTTG 59.132 55.000 16.46 0.00 0.00 2.93
3437 5349 0.235926 GGACGTCTGCTTCTGTTTGC 59.764 55.000 16.46 0.00 0.00 3.68
3566 5478 5.874810 GGTTCTAGTGATTGTGATGTGCTTA 59.125 40.000 0.00 0.00 0.00 3.09
3632 5544 5.567138 AACAAGACAAAGAGAAGTTGTGG 57.433 39.130 0.00 0.00 39.29 4.17
3707 5619 7.029563 CAGTAATTAACAAGTGGGCATCTTTC 58.970 38.462 0.00 0.00 0.00 2.62
3709 5621 6.670695 AATTAACAAGTGGGCATCTTTCTT 57.329 33.333 0.00 0.00 0.00 2.52
3739 5654 5.147767 AGAGTGGTGGCTCATACATACATA 58.852 41.667 0.00 0.00 37.94 2.29
3740 5655 5.011125 AGAGTGGTGGCTCATACATACATAC 59.989 44.000 0.00 0.00 37.94 2.39
3741 5656 4.653801 AGTGGTGGCTCATACATACATACA 59.346 41.667 0.00 0.00 0.00 2.29
3742 5657 5.307976 AGTGGTGGCTCATACATACATACAT 59.692 40.000 0.00 0.00 0.00 2.29
3743 5658 6.496911 AGTGGTGGCTCATACATACATACATA 59.503 38.462 0.00 0.00 0.00 2.29
3744 5659 6.590292 GTGGTGGCTCATACATACATACATAC 59.410 42.308 0.00 0.00 0.00 2.39
3745 5660 6.268847 TGGTGGCTCATACATACATACATACA 59.731 38.462 0.00 0.00 0.00 2.29
3746 5661 7.038373 TGGTGGCTCATACATACATACATACAT 60.038 37.037 0.00 0.00 0.00 2.29
3779 5694 5.741673 GCATAAAAGCAGGGGAAAAGACAAA 60.742 40.000 0.00 0.00 0.00 2.83
3802 5717 2.975193 CACGTCAGCAATGAATGTTGTG 59.025 45.455 0.00 0.00 40.76 3.33
3961 5922 7.174363 AGATAGATCTTCTAGAGGTTTCCCT 57.826 40.000 0.00 0.00 37.61 4.20
3962 5923 7.238710 AGATAGATCTTCTAGAGGTTTCCCTC 58.761 42.308 0.00 0.32 45.40 4.30
3979 5940 1.482177 CCTCCTCCCTCCATAGGTCAG 60.482 61.905 0.00 0.00 41.89 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 6.791303 TGCGGGAATCAGTTACAAAATATTC 58.209 36.000 0.00 0.00 0.00 1.75
82 83 3.430862 GCGTTGCTGCGGGAATCA 61.431 61.111 1.67 0.00 0.00 2.57
142 459 5.107133 CAGAAAAGAAGGCAATTGCTATGG 58.893 41.667 28.42 5.41 41.70 2.74
155 472 1.517242 AGCAGCGTCCAGAAAAGAAG 58.483 50.000 0.00 0.00 0.00 2.85
156 473 2.831685 TAGCAGCGTCCAGAAAAGAA 57.168 45.000 0.00 0.00 0.00 2.52
158 475 4.122776 ACATATAGCAGCGTCCAGAAAAG 58.877 43.478 0.00 0.00 0.00 2.27
161 478 2.287608 CGACATATAGCAGCGTCCAGAA 60.288 50.000 0.00 0.00 0.00 3.02
162 479 1.266989 CGACATATAGCAGCGTCCAGA 59.733 52.381 0.00 0.00 0.00 3.86
163 480 1.691127 CGACATATAGCAGCGTCCAG 58.309 55.000 0.00 0.00 0.00 3.86
164 481 0.318699 GCGACATATAGCAGCGTCCA 60.319 55.000 0.00 0.00 0.00 4.02
165 482 1.337817 CGCGACATATAGCAGCGTCC 61.338 60.000 0.00 0.00 44.96 4.79
166 483 2.054801 CGCGACATATAGCAGCGTC 58.945 57.895 0.00 0.00 44.96 5.19
167 484 4.228451 CGCGACATATAGCAGCGT 57.772 55.556 0.00 0.00 44.96 5.07
169 486 1.453524 CTGAACGCGACATATAGCAGC 59.546 52.381 15.93 0.00 0.00 5.25
170 487 1.453524 GCTGAACGCGACATATAGCAG 59.546 52.381 15.93 8.81 0.00 4.24
171 488 1.487482 GCTGAACGCGACATATAGCA 58.513 50.000 15.93 0.00 0.00 3.49
172 489 0.784778 GGCTGAACGCGACATATAGC 59.215 55.000 15.93 13.07 40.44 2.97
173 490 2.054363 CTGGCTGAACGCGACATATAG 58.946 52.381 15.93 3.09 40.44 1.31
174 491 1.868109 GCTGGCTGAACGCGACATATA 60.868 52.381 15.93 1.20 40.44 0.86
175 492 1.154205 GCTGGCTGAACGCGACATAT 61.154 55.000 15.93 0.00 40.44 1.78
176 493 1.809619 GCTGGCTGAACGCGACATA 60.810 57.895 15.93 1.87 40.44 2.29
177 494 3.121030 GCTGGCTGAACGCGACAT 61.121 61.111 15.93 0.00 40.44 3.06
178 495 4.600576 TGCTGGCTGAACGCGACA 62.601 61.111 15.93 11.98 40.44 4.35
179 496 4.077188 GTGCTGGCTGAACGCGAC 62.077 66.667 15.93 7.16 40.44 5.19
180 497 4.600576 TGTGCTGGCTGAACGCGA 62.601 61.111 15.93 0.00 40.44 5.87
181 498 4.374702 GTGTGCTGGCTGAACGCG 62.375 66.667 3.53 3.53 40.44 6.01
182 499 4.374702 CGTGTGCTGGCTGAACGC 62.375 66.667 6.01 6.01 38.13 4.84
183 500 4.374702 GCGTGTGCTGGCTGAACG 62.375 66.667 0.00 3.19 38.39 3.95
184 501 4.374702 CGCGTGTGCTGGCTGAAC 62.375 66.667 0.00 0.00 39.65 3.18
207 524 2.434359 GACTTCCCCCAACGCGAG 60.434 66.667 15.93 4.40 0.00 5.03
208 525 4.011517 GGACTTCCCCCAACGCGA 62.012 66.667 15.93 0.00 0.00 5.87
248 565 3.850098 AAACAGGCTGTGGCTCCCG 62.850 63.158 22.83 0.00 35.88 5.14
249 566 1.115326 AAAAACAGGCTGTGGCTCCC 61.115 55.000 22.83 0.00 35.88 4.30
250 567 2.429927 AAAAACAGGCTGTGGCTCC 58.570 52.632 22.83 0.00 35.88 4.70
443 760 9.693739 ATACCTGTTGAACATATATTTGGTTCA 57.306 29.630 8.19 11.23 46.46 3.18
520 837 9.676195 CAACATTTGTCATATACTTGTTCAACA 57.324 29.630 0.00 0.00 29.70 3.33
521 838 9.891828 TCAACATTTGTCATATACTTGTTCAAC 57.108 29.630 0.00 0.00 29.70 3.18
523 840 9.891828 GTTCAACATTTGTCATATACTTGTTCA 57.108 29.630 0.00 0.00 29.70 3.18
524 841 9.891828 TGTTCAACATTTGTCATATACTTGTTC 57.108 29.630 0.00 0.00 29.70 3.18
526 843 9.897744 CTTGTTCAACATTTGTCATATACTTGT 57.102 29.630 0.00 0.00 0.00 3.16
527 844 9.897744 ACTTGTTCAACATTTGTCATATACTTG 57.102 29.630 0.00 0.00 0.00 3.16
532 849 9.859427 CCAATACTTGTTCAACATTTGTCATAT 57.141 29.630 0.00 0.00 0.00 1.78
533 850 9.072375 TCCAATACTTGTTCAACATTTGTCATA 57.928 29.630 0.00 0.00 0.00 2.15
534 851 7.950512 TCCAATACTTGTTCAACATTTGTCAT 58.049 30.769 0.00 0.00 0.00 3.06
535 852 7.340122 TCCAATACTTGTTCAACATTTGTCA 57.660 32.000 0.00 0.00 0.00 3.58
536 853 8.641499 TTTCCAATACTTGTTCAACATTTGTC 57.359 30.769 0.00 0.00 0.00 3.18
537 854 9.612066 ATTTTCCAATACTTGTTCAACATTTGT 57.388 25.926 0.00 0.00 0.00 2.83
538 855 9.866936 CATTTTCCAATACTTGTTCAACATTTG 57.133 29.630 0.00 0.00 0.00 2.32
539 856 9.612066 ACATTTTCCAATACTTGTTCAACATTT 57.388 25.926 0.00 0.00 0.00 2.32
540 857 9.612066 AACATTTTCCAATACTTGTTCAACATT 57.388 25.926 0.00 0.00 0.00 2.71
541 858 9.044150 CAACATTTTCCAATACTTGTTCAACAT 57.956 29.630 0.00 0.00 0.00 2.71
542 859 8.253810 TCAACATTTTCCAATACTTGTTCAACA 58.746 29.630 0.00 0.00 0.00 3.33
543 860 8.641499 TCAACATTTTCCAATACTTGTTCAAC 57.359 30.769 0.00 0.00 0.00 3.18
544 861 9.092876 GTTCAACATTTTCCAATACTTGTTCAA 57.907 29.630 0.00 0.00 0.00 2.69
545 862 8.253810 TGTTCAACATTTTCCAATACTTGTTCA 58.746 29.630 0.00 0.00 0.00 3.18
546 863 8.641499 TGTTCAACATTTTCCAATACTTGTTC 57.359 30.769 0.00 0.00 0.00 3.18
547 864 9.097257 CTTGTTCAACATTTTCCAATACTTGTT 57.903 29.630 0.00 0.00 0.00 2.83
548 865 8.474025 TCTTGTTCAACATTTTCCAATACTTGT 58.526 29.630 0.00 0.00 0.00 3.16
549 866 8.870160 TCTTGTTCAACATTTTCCAATACTTG 57.130 30.769 0.00 0.00 0.00 3.16
554 871 9.393512 TCAAATTCTTGTTCAACATTTTCCAAT 57.606 25.926 0.00 0.00 33.94 3.16
555 872 8.783833 TCAAATTCTTGTTCAACATTTTCCAA 57.216 26.923 0.00 0.00 33.94 3.53
556 873 8.783833 TTCAAATTCTTGTTCAACATTTTCCA 57.216 26.923 0.00 0.00 33.94 3.53
563 880 9.823098 CAACATTTTTCAAATTCTTGTTCAACA 57.177 25.926 0.00 0.00 33.94 3.33
582 899 9.934190 GCATTTTCAAATACTTGTTCAACATTT 57.066 25.926 0.00 0.00 33.94 2.32
583 900 9.328845 AGCATTTTCAAATACTTGTTCAACATT 57.671 25.926 0.00 0.00 33.94 2.71
584 901 8.767085 CAGCATTTTCAAATACTTGTTCAACAT 58.233 29.630 0.00 0.00 33.94 2.71
585 902 7.978414 TCAGCATTTTCAAATACTTGTTCAACA 59.022 29.630 0.00 0.00 33.94 3.33
586 903 8.351495 TCAGCATTTTCAAATACTTGTTCAAC 57.649 30.769 0.00 0.00 33.94 3.18
587 904 8.939201 TTCAGCATTTTCAAATACTTGTTCAA 57.061 26.923 0.00 0.00 33.94 2.69
605 922 9.533253 GGCACATTTTAAATACTTATTCAGCAT 57.467 29.630 0.00 0.00 0.00 3.79
606 923 8.526978 TGGCACATTTTAAATACTTATTCAGCA 58.473 29.630 0.00 0.00 0.00 4.41
607 924 8.925161 TGGCACATTTTAAATACTTATTCAGC 57.075 30.769 0.00 0.00 0.00 4.26
609 926 9.364989 GCTTGGCACATTTTAAATACTTATTCA 57.635 29.630 0.00 0.00 39.30 2.57
610 927 9.586435 AGCTTGGCACATTTTAAATACTTATTC 57.414 29.630 0.00 0.00 39.30 1.75
613 930 9.238368 AGTAGCTTGGCACATTTTAAATACTTA 57.762 29.630 0.00 0.00 39.30 2.24
614 931 8.122472 AGTAGCTTGGCACATTTTAAATACTT 57.878 30.769 0.00 0.00 39.30 2.24
615 932 7.703058 AGTAGCTTGGCACATTTTAAATACT 57.297 32.000 0.00 0.00 39.30 2.12
616 933 9.503427 CTAAGTAGCTTGGCACATTTTAAATAC 57.497 33.333 0.00 0.00 39.30 1.89
617 934 8.188139 GCTAAGTAGCTTGGCACATTTTAAATA 58.812 33.333 11.42 0.00 45.20 1.40
618 935 7.035612 GCTAAGTAGCTTGGCACATTTTAAAT 58.964 34.615 11.42 0.00 45.20 1.40
619 936 6.386654 GCTAAGTAGCTTGGCACATTTTAAA 58.613 36.000 11.42 0.00 45.20 1.52
620 937 5.949735 GCTAAGTAGCTTGGCACATTTTAA 58.050 37.500 11.42 0.00 45.20 1.52
621 938 5.560966 GCTAAGTAGCTTGGCACATTTTA 57.439 39.130 11.42 0.00 45.20 1.52
622 939 4.440839 GCTAAGTAGCTTGGCACATTTT 57.559 40.909 11.42 0.00 45.20 1.82
635 952 2.730404 CGATGATGCAGCTGCTAAGTAG 59.270 50.000 36.61 20.82 42.66 2.57
636 953 2.747436 CGATGATGCAGCTGCTAAGTA 58.253 47.619 36.61 18.93 42.66 2.24
637 954 1.579698 CGATGATGCAGCTGCTAAGT 58.420 50.000 36.61 21.29 42.66 2.24
638 955 0.235144 GCGATGATGCAGCTGCTAAG 59.765 55.000 36.61 22.20 42.66 2.18
639 956 1.493134 CGCGATGATGCAGCTGCTAA 61.493 55.000 36.61 23.00 42.66 3.09
640 957 1.952635 CGCGATGATGCAGCTGCTA 60.953 57.895 36.61 24.05 42.66 3.49
641 958 3.270092 CGCGATGATGCAGCTGCT 61.270 61.111 36.61 23.26 42.66 4.24
642 959 4.309347 CCGCGATGATGCAGCTGC 62.309 66.667 31.89 31.89 42.50 5.25
643 960 2.586914 TCCGCGATGATGCAGCTG 60.587 61.111 8.23 10.11 34.15 4.24
644 961 2.279985 CTCCGCGATGATGCAGCT 60.280 61.111 8.23 0.00 34.15 4.24
645 962 2.279717 TCTCCGCGATGATGCAGC 60.280 61.111 8.23 0.00 34.15 5.25
646 963 1.953138 GGTCTCCGCGATGATGCAG 60.953 63.158 8.23 0.00 34.15 4.41
647 964 2.106938 GGTCTCCGCGATGATGCA 59.893 61.111 8.23 0.00 34.15 3.96
648 965 3.032609 CGGTCTCCGCGATGATGC 61.033 66.667 8.23 0.00 41.17 3.91
649 966 2.355126 CCGGTCTCCGCGATGATG 60.355 66.667 8.23 2.33 46.86 3.07
650 967 3.606662 CCCGGTCTCCGCGATGAT 61.607 66.667 8.23 0.00 46.86 2.45
658 975 1.143401 GATCGAAACCCCGGTCTCC 59.857 63.158 0.00 0.00 36.78 3.71
659 976 1.143401 GGATCGAAACCCCGGTCTC 59.857 63.158 0.00 0.00 39.46 3.36
660 977 1.305887 AGGATCGAAACCCCGGTCT 60.306 57.895 0.00 0.00 39.46 3.85
661 978 1.143401 GAGGATCGAAACCCCGGTC 59.857 63.158 0.00 0.00 38.84 4.79
662 979 2.364780 GGAGGATCGAAACCCCGGT 61.365 63.158 0.00 0.00 34.37 5.28
663 980 2.311688 CTGGAGGATCGAAACCCCGG 62.312 65.000 0.00 0.00 34.37 5.73
664 981 1.144057 CTGGAGGATCGAAACCCCG 59.856 63.158 8.14 0.00 34.37 5.73
665 982 0.178301 GACTGGAGGATCGAAACCCC 59.822 60.000 8.14 9.41 34.37 4.95
666 983 1.196012 AGACTGGAGGATCGAAACCC 58.804 55.000 8.14 1.62 34.37 4.11
667 984 2.418884 GGAAGACTGGAGGATCGAAACC 60.419 54.545 0.00 0.00 34.37 3.27
668 985 2.233922 TGGAAGACTGGAGGATCGAAAC 59.766 50.000 0.00 0.00 34.37 2.78
669 986 2.536066 TGGAAGACTGGAGGATCGAAA 58.464 47.619 0.00 0.00 34.37 3.46
670 987 2.231716 TGGAAGACTGGAGGATCGAA 57.768 50.000 0.00 0.00 34.37 3.71
671 988 2.034878 CATGGAAGACTGGAGGATCGA 58.965 52.381 0.00 0.00 34.37 3.59
672 989 1.759445 ACATGGAAGACTGGAGGATCG 59.241 52.381 0.00 0.00 34.37 3.69
673 990 3.922171 AACATGGAAGACTGGAGGATC 57.078 47.619 0.00 0.00 0.00 3.36
674 991 4.664688 AAAACATGGAAGACTGGAGGAT 57.335 40.909 0.00 0.00 0.00 3.24
675 992 4.104738 AGAAAAACATGGAAGACTGGAGGA 59.895 41.667 0.00 0.00 0.00 3.71
676 993 4.401925 AGAAAAACATGGAAGACTGGAGG 58.598 43.478 0.00 0.00 0.00 4.30
677 994 5.180868 CAGAGAAAAACATGGAAGACTGGAG 59.819 44.000 0.00 0.00 0.00 3.86
678 995 5.065914 CAGAGAAAAACATGGAAGACTGGA 58.934 41.667 0.00 0.00 0.00 3.86
679 996 4.823989 ACAGAGAAAAACATGGAAGACTGG 59.176 41.667 0.00 0.00 0.00 4.00
680 997 6.382869 AACAGAGAAAAACATGGAAGACTG 57.617 37.500 0.00 0.00 0.00 3.51
681 998 8.697507 AATAACAGAGAAAAACATGGAAGACT 57.302 30.769 0.00 0.00 0.00 3.24
682 999 9.750125 AAAATAACAGAGAAAAACATGGAAGAC 57.250 29.630 0.00 0.00 0.00 3.01
683 1000 9.748708 CAAAATAACAGAGAAAAACATGGAAGA 57.251 29.630 0.00 0.00 0.00 2.87
684 1001 9.748708 TCAAAATAACAGAGAAAAACATGGAAG 57.251 29.630 0.00 0.00 0.00 3.46
686 1003 9.748708 CTTCAAAATAACAGAGAAAAACATGGA 57.251 29.630 0.00 0.00 0.00 3.41
687 1004 9.533253 ACTTCAAAATAACAGAGAAAAACATGG 57.467 29.630 0.00 0.00 0.00 3.66
692 1009 9.301153 GCTTGACTTCAAAATAACAGAGAAAAA 57.699 29.630 0.00 0.00 35.15 1.94
693 1010 8.465999 TGCTTGACTTCAAAATAACAGAGAAAA 58.534 29.630 0.00 0.00 35.15 2.29
694 1011 7.995289 TGCTTGACTTCAAAATAACAGAGAAA 58.005 30.769 0.00 0.00 35.15 2.52
695 1012 7.566760 TGCTTGACTTCAAAATAACAGAGAA 57.433 32.000 0.00 0.00 35.15 2.87
696 1013 7.566760 TTGCTTGACTTCAAAATAACAGAGA 57.433 32.000 0.00 0.00 35.15 3.10
697 1014 8.633075 TTTTGCTTGACTTCAAAATAACAGAG 57.367 30.769 0.00 0.00 37.29 3.35
698 1015 8.465999 TCTTTTGCTTGACTTCAAAATAACAGA 58.534 29.630 0.00 0.00 40.19 3.41
699 1016 8.633075 TCTTTTGCTTGACTTCAAAATAACAG 57.367 30.769 0.00 0.00 40.19 3.16
700 1017 8.994429 TTCTTTTGCTTGACTTCAAAATAACA 57.006 26.923 0.00 0.00 40.19 2.41
704 1021 8.400186 CCATTTTCTTTTGCTTGACTTCAAAAT 58.600 29.630 0.00 0.00 40.19 1.82
705 1022 7.605691 TCCATTTTCTTTTGCTTGACTTCAAAA 59.394 29.630 0.00 0.00 39.13 2.44
706 1023 7.064490 GTCCATTTTCTTTTGCTTGACTTCAAA 59.936 33.333 0.00 0.00 35.15 2.69
707 1024 6.534793 GTCCATTTTCTTTTGCTTGACTTCAA 59.465 34.615 0.00 0.00 0.00 2.69
708 1025 6.042143 GTCCATTTTCTTTTGCTTGACTTCA 58.958 36.000 0.00 0.00 0.00 3.02
709 1026 5.463392 GGTCCATTTTCTTTTGCTTGACTTC 59.537 40.000 0.00 0.00 0.00 3.01
710 1027 5.129320 AGGTCCATTTTCTTTTGCTTGACTT 59.871 36.000 0.00 0.00 0.00 3.01
711 1028 4.651045 AGGTCCATTTTCTTTTGCTTGACT 59.349 37.500 0.00 0.00 0.00 3.41
712 1029 4.746611 CAGGTCCATTTTCTTTTGCTTGAC 59.253 41.667 0.00 0.00 0.00 3.18
713 1030 4.740334 GCAGGTCCATTTTCTTTTGCTTGA 60.740 41.667 0.00 0.00 0.00 3.02
714 1031 3.495753 GCAGGTCCATTTTCTTTTGCTTG 59.504 43.478 0.00 0.00 0.00 4.01
715 1032 3.494924 GGCAGGTCCATTTTCTTTTGCTT 60.495 43.478 0.00 0.00 34.01 3.91
716 1033 2.037641 GGCAGGTCCATTTTCTTTTGCT 59.962 45.455 0.00 0.00 34.01 3.91
717 1034 2.416747 GGCAGGTCCATTTTCTTTTGC 58.583 47.619 0.00 0.00 34.01 3.68
718 1035 2.610232 CGGGCAGGTCCATTTTCTTTTG 60.610 50.000 0.00 0.00 36.21 2.44
719 1036 1.618343 CGGGCAGGTCCATTTTCTTTT 59.382 47.619 0.00 0.00 36.21 2.27
720 1037 1.203001 TCGGGCAGGTCCATTTTCTTT 60.203 47.619 0.00 0.00 36.21 2.52
721 1038 0.404040 TCGGGCAGGTCCATTTTCTT 59.596 50.000 0.00 0.00 36.21 2.52
722 1039 0.625849 ATCGGGCAGGTCCATTTTCT 59.374 50.000 0.00 0.00 36.21 2.52
723 1040 1.405463 GAATCGGGCAGGTCCATTTTC 59.595 52.381 0.00 0.00 36.21 2.29
724 1041 1.474330 GAATCGGGCAGGTCCATTTT 58.526 50.000 0.00 0.00 36.21 1.82
725 1042 0.748005 CGAATCGGGCAGGTCCATTT 60.748 55.000 0.00 0.00 36.21 2.32
726 1043 1.153168 CGAATCGGGCAGGTCCATT 60.153 57.895 0.00 0.00 36.21 3.16
727 1044 1.046472 TACGAATCGGGCAGGTCCAT 61.046 55.000 7.80 0.00 36.21 3.41
728 1045 1.672854 CTACGAATCGGGCAGGTCCA 61.673 60.000 7.80 0.00 36.21 4.02
729 1046 1.067582 CTACGAATCGGGCAGGTCC 59.932 63.158 7.80 0.00 0.00 4.46
730 1047 1.067582 CCTACGAATCGGGCAGGTC 59.932 63.158 7.80 0.00 0.00 3.85
731 1048 2.432300 CCCTACGAATCGGGCAGGT 61.432 63.158 7.80 0.00 32.83 4.00
732 1049 2.421739 CCCTACGAATCGGGCAGG 59.578 66.667 7.80 10.13 32.83 4.85
736 1053 1.364171 CTCTGCCCTACGAATCGGG 59.636 63.158 7.80 0.00 43.60 5.14
737 1054 1.107538 TCCTCTGCCCTACGAATCGG 61.108 60.000 7.80 0.00 0.00 4.18
738 1055 0.744874 TTCCTCTGCCCTACGAATCG 59.255 55.000 0.00 0.00 0.00 3.34
739 1056 2.032620 TCTTCCTCTGCCCTACGAATC 58.967 52.381 0.00 0.00 0.00 2.52
740 1057 2.160721 TCTTCCTCTGCCCTACGAAT 57.839 50.000 0.00 0.00 0.00 3.34
741 1058 2.160721 ATCTTCCTCTGCCCTACGAA 57.839 50.000 0.00 0.00 0.00 3.85
742 1059 2.032620 GAATCTTCCTCTGCCCTACGA 58.967 52.381 0.00 0.00 0.00 3.43
743 1060 1.069358 GGAATCTTCCTCTGCCCTACG 59.931 57.143 1.57 0.00 44.11 3.51
744 1061 2.920724 GGAATCTTCCTCTGCCCTAC 57.079 55.000 1.57 0.00 44.11 3.18
764 1081 3.751049 ATAGCCTCCTCCCGCCGAA 62.751 63.158 0.00 0.00 0.00 4.30
765 1082 4.220163 ATAGCCTCCTCCCGCCGA 62.220 66.667 0.00 0.00 0.00 5.54
766 1083 3.686045 GATAGCCTCCTCCCGCCG 61.686 72.222 0.00 0.00 0.00 6.46
767 1084 3.315140 GGATAGCCTCCTCCCGCC 61.315 72.222 0.00 0.00 41.29 6.13
774 1091 4.749976 CTTTAAGCGATAGGATAGCCTCC 58.250 47.826 0.73 0.00 45.54 4.30
775 1092 4.177783 GCTTTAAGCGATAGGATAGCCTC 58.822 47.826 0.73 0.00 45.54 4.70
789 1106 5.848559 GCAAGAGCTATTTATCGCTTTAAGC 59.151 40.000 6.92 6.92 36.45 3.09
790 1107 6.067669 CGCAAGAGCTATTTATCGCTTTAAG 58.932 40.000 0.00 0.00 43.02 1.85
791 1108 5.050363 CCGCAAGAGCTATTTATCGCTTTAA 60.050 40.000 0.00 0.00 43.02 1.52
792 1109 4.447724 CCGCAAGAGCTATTTATCGCTTTA 59.552 41.667 0.00 0.00 43.02 1.85
793 1110 3.248602 CCGCAAGAGCTATTTATCGCTTT 59.751 43.478 0.00 0.00 43.02 3.51
794 1111 2.802816 CCGCAAGAGCTATTTATCGCTT 59.197 45.455 0.00 0.00 43.02 4.68
795 1112 2.224066 ACCGCAAGAGCTATTTATCGCT 60.224 45.455 0.00 0.00 43.02 4.93
796 1113 2.135933 ACCGCAAGAGCTATTTATCGC 58.864 47.619 0.00 0.00 43.02 4.58
797 1114 3.643763 AGACCGCAAGAGCTATTTATCG 58.356 45.455 0.00 0.00 43.02 2.92
798 1115 5.993106 AAAGACCGCAAGAGCTATTTATC 57.007 39.130 0.00 0.00 43.02 1.75
799 1116 6.116126 AGAAAAGACCGCAAGAGCTATTTAT 58.884 36.000 0.00 0.00 43.02 1.40
800 1117 5.488341 AGAAAAGACCGCAAGAGCTATTTA 58.512 37.500 0.00 0.00 43.02 1.40
801 1118 4.327680 AGAAAAGACCGCAAGAGCTATTT 58.672 39.130 0.00 0.00 43.02 1.40
802 1119 3.944087 AGAAAAGACCGCAAGAGCTATT 58.056 40.909 0.00 0.00 43.02 1.73
803 1120 3.618690 AGAAAAGACCGCAAGAGCTAT 57.381 42.857 0.00 0.00 43.02 2.97
804 1121 3.119101 CCTAGAAAAGACCGCAAGAGCTA 60.119 47.826 0.00 0.00 43.02 3.32
805 1122 2.354203 CCTAGAAAAGACCGCAAGAGCT 60.354 50.000 0.00 0.00 43.02 4.09
806 1123 2.003301 CCTAGAAAAGACCGCAAGAGC 58.997 52.381 0.00 0.00 43.02 4.09
807 1124 2.622436 CCCTAGAAAAGACCGCAAGAG 58.378 52.381 0.00 0.00 43.02 2.85
808 1125 1.278127 CCCCTAGAAAAGACCGCAAGA 59.722 52.381 0.00 0.00 43.02 3.02
809 1126 1.739067 CCCCTAGAAAAGACCGCAAG 58.261 55.000 0.00 0.00 0.00 4.01
810 1127 0.322187 GCCCCTAGAAAAGACCGCAA 60.322 55.000 0.00 0.00 0.00 4.85
811 1128 1.298667 GCCCCTAGAAAAGACCGCA 59.701 57.895 0.00 0.00 0.00 5.69
812 1129 1.451567 GGCCCCTAGAAAAGACCGC 60.452 63.158 0.00 0.00 0.00 5.68
813 1130 0.107654 CTGGCCCCTAGAAAAGACCG 60.108 60.000 0.00 0.00 0.00 4.79
814 1131 0.394488 GCTGGCCCCTAGAAAAGACC 60.394 60.000 0.00 0.00 0.00 3.85
815 1132 0.394488 GGCTGGCCCCTAGAAAAGAC 60.394 60.000 0.00 0.00 0.00 3.01
816 1133 0.550147 AGGCTGGCCCCTAGAAAAGA 60.550 55.000 8.11 0.00 36.58 2.52
817 1134 1.213296 TAGGCTGGCCCCTAGAAAAG 58.787 55.000 8.11 0.00 36.41 2.27
818 1135 3.428310 TAGGCTGGCCCCTAGAAAA 57.572 52.632 8.11 0.00 36.41 2.29
886 1203 1.602888 CAACTTGGGCTCTGCTGCT 60.603 57.895 0.00 0.00 0.00 4.24
887 1204 1.174712 TTCAACTTGGGCTCTGCTGC 61.175 55.000 0.00 0.00 0.00 5.25
888 1205 1.268899 CTTTCAACTTGGGCTCTGCTG 59.731 52.381 0.00 0.00 0.00 4.41
890 1207 1.268079 GACTTTCAACTTGGGCTCTGC 59.732 52.381 0.00 0.00 0.00 4.26
891 1208 2.291741 GTGACTTTCAACTTGGGCTCTG 59.708 50.000 0.00 0.00 0.00 3.35
893 1210 2.576615 AGTGACTTTCAACTTGGGCTC 58.423 47.619 0.00 0.00 0.00 4.70
1088 1407 2.761195 GGAACCATTTCCGCCGCTC 61.761 63.158 0.00 0.00 42.20 5.03
1225 1544 4.043200 GTCGGCACCTTGCTTGGC 62.043 66.667 0.00 0.00 44.28 4.52
1241 1560 3.331889 ACAATGATGTGGAAAGAGAGGGT 59.668 43.478 0.00 0.00 38.69 4.34
1242 1561 3.960571 ACAATGATGTGGAAAGAGAGGG 58.039 45.455 0.00 0.00 38.69 4.30
1253 1572 7.974675 ACTACTCGGAAATAAACAATGATGTG 58.025 34.615 0.00 0.00 40.46 3.21
1254 1573 9.832445 ATACTACTCGGAAATAAACAATGATGT 57.168 29.630 0.00 0.00 43.14 3.06
1310 1629 2.094854 AGACTACCACGAACCGAATCAC 60.095 50.000 0.00 0.00 0.00 3.06
1354 1673 4.324719 GGTAAATTCACATGGGGACTACCA 60.325 45.833 10.40 0.00 46.24 3.25
1414 1733 2.135933 CGAGTTCAGACAACCCAAGAC 58.864 52.381 0.00 0.00 0.00 3.01
1454 1773 6.713762 AAAATATTTGATCCAATCGCTCCA 57.286 33.333 0.39 0.00 0.00 3.86
1455 1774 8.299570 ACATAAAATATTTGATCCAATCGCTCC 58.700 33.333 0.39 0.00 0.00 4.70
1503 1823 3.622630 TGCAGTAGAACTCTAGTCCCTC 58.377 50.000 0.00 0.00 30.04 4.30
1649 1970 4.018490 TGTCAATGCAGTAATGGCAGAAT 58.982 39.130 0.00 0.00 45.68 2.40
1682 2003 7.766219 ACCATTAGTTAGTTACTATGTTGCG 57.234 36.000 0.00 0.00 39.07 4.85
1738 2170 2.426381 CACTTAGGAACGGAGGGAGTAC 59.574 54.545 0.00 0.00 0.00 2.73
1741 2173 1.558233 ACACTTAGGAACGGAGGGAG 58.442 55.000 0.00 0.00 0.00 4.30
1863 2304 5.704053 CCCTCCGTTTGTAAATACAAGTCTT 59.296 40.000 6.16 0.00 45.77 3.01
1877 2318 2.299297 AGAACAGTACTCCCTCCGTTTG 59.701 50.000 0.00 0.00 0.00 2.93
1878 2319 2.606378 AGAACAGTACTCCCTCCGTTT 58.394 47.619 0.00 0.00 0.00 3.60
1895 2336 0.384309 CCTACGACCATGCGCTAGAA 59.616 55.000 9.73 0.00 33.86 2.10
1907 2348 0.382515 CACAGCTAGGAGCCTACGAC 59.617 60.000 0.00 0.00 43.77 4.34
1927 2368 5.664457 TGGTGCATATCTCTTACAGACTTG 58.336 41.667 0.00 0.00 32.26 3.16
2031 2472 1.135527 CGGACTGAGGTTATGCGGTTA 59.864 52.381 0.00 0.00 0.00 2.85
2131 2572 2.424956 GCGCCTTTTCATCTTTCCTGAT 59.575 45.455 0.00 0.00 0.00 2.90
2304 2745 5.509498 TCTTTCTAGTGCTGGCCATTAAAT 58.491 37.500 5.51 0.00 0.00 1.40
2329 2770 9.516314 GCCTTAACTATAACATCAACAATTTCC 57.484 33.333 0.00 0.00 0.00 3.13
2521 2972 5.359576 TGTTTGCAGACATCTAAGGTTTTGT 59.640 36.000 5.87 0.00 0.00 2.83
2527 2978 5.877012 AGTACATGTTTGCAGACATCTAAGG 59.123 40.000 19.28 10.81 38.15 2.69
2568 3019 5.821204 AGAAAACGTTGAAGAATTGGACTG 58.179 37.500 0.00 0.00 0.00 3.51
2575 3026 5.890334 TGCAGAAAGAAAACGTTGAAGAAT 58.110 33.333 0.00 0.00 0.00 2.40
2760 3212 4.012374 ACAGTAGCTTGTCCCATGAAATG 58.988 43.478 0.00 0.00 46.21 2.32
2761 3213 4.012374 CACAGTAGCTTGTCCCATGAAAT 58.988 43.478 0.00 0.00 0.00 2.17
2893 3413 8.950961 CATCGAGCAAAACATTTCAATATACTG 58.049 33.333 0.00 0.00 0.00 2.74
2976 3496 3.834489 TCTGAATCATGGCTTCTCCTC 57.166 47.619 9.41 0.00 35.26 3.71
3068 3588 5.438761 AGTGTGTATCTTTCAACTTTGCC 57.561 39.130 0.00 0.00 0.00 4.52
3078 3598 9.950680 CACAACAAAAGAATAGTGTGTATCTTT 57.049 29.630 0.00 0.00 42.30 2.52
3081 3601 9.807386 GTACACAACAAAAGAATAGTGTGTATC 57.193 33.333 15.19 7.69 41.47 2.24
3082 3602 9.555727 AGTACACAACAAAAGAATAGTGTGTAT 57.444 29.630 15.19 4.96 41.47 2.29
3083 3603 8.822855 CAGTACACAACAAAAGAATAGTGTGTA 58.177 33.333 9.69 9.69 40.11 2.90
3104 3624 8.642020 CAAAAGCAAGAAAATAGAATGCAGTAC 58.358 33.333 0.00 0.00 39.42 2.73
3134 3654 0.108585 TGGCAGGTCACTTCTTCCAC 59.891 55.000 0.00 0.00 0.00 4.02
3215 3735 9.170734 TGACATGATAAGAAAGAGAAAATCCAG 57.829 33.333 0.00 0.00 0.00 3.86
3437 5349 4.455533 TGGCTGGATTAATTATGCGCTAAG 59.544 41.667 9.73 0.00 0.00 2.18
3485 5397 1.656095 CACGCACTCGGATTCTTCTTC 59.344 52.381 0.00 0.00 40.69 2.87
3532 5444 3.134574 TCACTAGAACCATGCCGTTTT 57.865 42.857 0.00 0.00 0.00 2.43
3566 5478 7.463961 AAATTCATCAGAGCAAAAGATGAGT 57.536 32.000 0.00 0.00 46.06 3.41
3707 5619 3.882888 TGAGCCACCACTCTTTGTTAAAG 59.117 43.478 0.00 0.00 37.58 1.85
3709 5621 3.569194 TGAGCCACCACTCTTTGTTAA 57.431 42.857 0.00 0.00 37.58 2.01
3739 5654 6.370433 TTTTATGCGTGCATGTATGTATGT 57.630 33.333 18.55 0.00 37.82 2.29
3740 5655 5.340403 GCTTTTATGCGTGCATGTATGTATG 59.660 40.000 18.55 9.69 37.82 2.39
3741 5656 5.008514 TGCTTTTATGCGTGCATGTATGTAT 59.991 36.000 18.55 11.04 37.82 2.29
3742 5657 4.333926 TGCTTTTATGCGTGCATGTATGTA 59.666 37.500 18.55 4.88 37.82 2.29
3743 5658 3.128415 TGCTTTTATGCGTGCATGTATGT 59.872 39.130 18.55 0.00 37.82 2.29
3744 5659 3.693654 TGCTTTTATGCGTGCATGTATG 58.306 40.909 18.55 4.00 37.82 2.39
3745 5660 3.243168 CCTGCTTTTATGCGTGCATGTAT 60.243 43.478 17.21 14.20 37.82 2.29
3746 5661 2.097304 CCTGCTTTTATGCGTGCATGTA 59.903 45.455 17.21 2.86 37.82 2.29
3779 5694 3.503363 ACAACATTCATTGCTGACGTGAT 59.497 39.130 0.00 0.00 32.47 3.06
3802 5717 6.851330 GCAACTACTAGTCAATTGTTGTGAAC 59.149 38.462 0.00 0.00 37.62 3.18
3818 5736 2.832129 CTCTCCAAGGTGGCAACTACTA 59.168 50.000 4.97 0.00 37.47 1.82
3819 5737 1.625818 CTCTCCAAGGTGGCAACTACT 59.374 52.381 4.97 0.00 37.47 2.57
3820 5738 1.339151 CCTCTCCAAGGTGGCAACTAC 60.339 57.143 4.97 0.00 40.67 2.73
3902 5863 4.943705 ACAGTGCCATACTATGTCAAAAGG 59.056 41.667 0.00 0.00 37.60 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.