Multiple sequence alignment - TraesCS3A01G224300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G224300 chr3A 100.000 2683 0 0 1 2683 419830091 419832773 0.000000e+00 4955.0
1 TraesCS3A01G224300 chr3A 85.731 862 101 9 1843 2683 340812768 340811908 0.000000e+00 891.0
2 TraesCS3A01G224300 chr3A 85.166 573 61 11 1843 2393 505233657 505234227 1.390000e-157 566.0
3 TraesCS3A01G224300 chr3A 95.413 109 5 0 1736 1844 683742423 683742531 9.870000e-40 174.0
4 TraesCS3A01G224300 chr3A 92.500 120 9 0 1730 1849 700359817 700359936 3.550000e-39 172.0
5 TraesCS3A01G224300 chr3A 94.643 112 5 1 1733 1844 740109920 740110030 3.550000e-39 172.0
6 TraesCS3A01G224300 chr3D 93.532 804 38 7 868 1662 312712670 312711872 0.000000e+00 1184.0
7 TraesCS3A01G224300 chr3D 85.545 422 60 1 1843 2263 574310522 574310101 8.820000e-120 440.0
8 TraesCS3A01G224300 chr3D 94.526 274 15 0 557 830 312712938 312712665 8.880000e-115 424.0
9 TraesCS3A01G224300 chr3D 77.132 551 115 5 4 552 168833157 168832616 2.590000e-80 309.0
10 TraesCS3A01G224300 chr3D 92.308 78 4 2 1667 1744 613457327 613457402 2.820000e-20 110.0
11 TraesCS3A01G224300 chr5D 86.343 864 93 11 1843 2683 322582214 322583075 0.000000e+00 918.0
12 TraesCS3A01G224300 chr5D 83.217 572 72 7 1846 2393 527147389 527146818 1.110000e-138 503.0
13 TraesCS3A01G224300 chr2A 85.995 864 94 15 1843 2683 666987269 666986410 0.000000e+00 900.0
14 TraesCS3A01G224300 chr2A 85.516 863 91 12 1843 2683 764123874 764123024 0.000000e+00 870.0
15 TraesCS3A01G224300 chr2A 83.953 511 74 7 1885 2390 203536072 203536579 1.440000e-132 483.0
16 TraesCS3A01G224300 chr2A 94.690 113 6 0 1732 1844 565200838 565200950 2.750000e-40 176.0
17 TraesCS3A01G224300 chr2A 93.333 120 7 1 1729 1847 748957565 748957446 2.750000e-40 176.0
18 TraesCS3A01G224300 chr2A 93.805 113 7 0 1732 1844 565185187 565185299 1.280000e-38 171.0
19 TraesCS3A01G224300 chr1D 85.947 861 97 10 1844 2683 436207192 436208049 0.000000e+00 898.0
20 TraesCS3A01G224300 chr1D 92.405 79 5 1 1666 1744 233084795 233084872 7.850000e-21 111.0
21 TraesCS3A01G224300 chr1D 89.773 88 6 3 1658 1744 74276251 74276336 2.820000e-20 110.0
22 TraesCS3A01G224300 chr5B 85.581 860 99 12 1843 2680 405742051 405742907 0.000000e+00 878.0
23 TraesCS3A01G224300 chr5B 85.616 584 57 9 2121 2683 289584871 289585448 2.980000e-164 588.0
24 TraesCS3A01G224300 chr7D 85.267 862 89 14 1843 2683 489109223 489108379 0.000000e+00 854.0
25 TraesCS3A01G224300 chr7D 84.615 572 67 9 1843 2393 249618368 249618939 1.400000e-152 549.0
26 TraesCS3A01G224300 chr7D 75.596 545 113 14 1 540 134828057 134828586 4.430000e-63 252.0
27 TraesCS3A01G224300 chr5A 83.179 862 103 18 1843 2683 236866849 236866009 0.000000e+00 750.0
28 TraesCS3A01G224300 chr5A 92.208 77 5 1 1662 1738 175835540 175835465 1.020000e-19 108.0
29 TraesCS3A01G224300 chr5A 88.372 86 8 2 1659 1744 435697550 435697467 4.730000e-18 102.0
30 TraesCS3A01G224300 chr3B 91.494 435 25 8 874 1301 407471284 407471713 2.980000e-164 588.0
31 TraesCS3A01G224300 chr3B 83.888 571 70 7 1843 2393 257779694 257779126 2.370000e-145 525.0
32 TraesCS3A01G224300 chr3B 92.603 365 20 4 1305 1662 407471791 407472155 3.960000e-143 518.0
33 TraesCS3A01G224300 chr3B 92.336 274 16 1 557 830 407471014 407471282 4.190000e-103 385.0
34 TraesCS3A01G224300 chrUn 85.820 543 54 9 2162 2683 68000625 68001165 3.020000e-154 555.0
35 TraesCS3A01G224300 chrUn 94.737 114 6 0 1737 1850 32898451 32898338 7.630000e-41 178.0
36 TraesCS3A01G224300 chr2D 84.792 480 59 6 1843 2320 596591198 596590731 1.120000e-128 470.0
37 TraesCS3A01G224300 chr2D 91.026 78 7 0 1666 1743 60771152 60771229 3.650000e-19 106.0
38 TraesCS3A01G224300 chr2B 77.314 551 108 11 4 552 731464979 731464444 2.590000e-80 309.0
39 TraesCS3A01G224300 chr2B 91.139 79 5 2 1666 1743 417775152 417775075 3.650000e-19 106.0
40 TraesCS3A01G224300 chr2B 90.123 81 7 1 1663 1743 774539570 774539649 1.310000e-18 104.0
41 TraesCS3A01G224300 chr1B 76.744 559 116 8 4 559 632835908 632835361 1.560000e-77 300.0
42 TraesCS3A01G224300 chr1B 73.477 279 57 11 252 517 484316400 484316126 3.680000e-14 89.8
43 TraesCS3A01G224300 chr6D 75.526 380 80 10 2 373 270112678 270112304 9.870000e-40 174.0
44 TraesCS3A01G224300 chr7A 92.500 120 9 0 1730 1849 671186442 671186561 3.550000e-39 172.0
45 TraesCS3A01G224300 chr6A 94.643 112 5 1 1735 1845 8193075 8192964 3.550000e-39 172.0
46 TraesCS3A01G224300 chr6B 88.372 86 8 2 1658 1743 719933094 719933011 4.730000e-18 102.0
47 TraesCS3A01G224300 chr6B 72.509 291 66 9 4 287 23030961 23031244 6.160000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G224300 chr3A 419830091 419832773 2682 False 4955 4955 100.000000 1 2683 1 chr3A.!!$F1 2682
1 TraesCS3A01G224300 chr3A 340811908 340812768 860 True 891 891 85.731000 1843 2683 1 chr3A.!!$R1 840
2 TraesCS3A01G224300 chr3A 505233657 505234227 570 False 566 566 85.166000 1843 2393 1 chr3A.!!$F2 550
3 TraesCS3A01G224300 chr3D 312711872 312712938 1066 True 804 1184 94.029000 557 1662 2 chr3D.!!$R3 1105
4 TraesCS3A01G224300 chr3D 168832616 168833157 541 True 309 309 77.132000 4 552 1 chr3D.!!$R1 548
5 TraesCS3A01G224300 chr5D 322582214 322583075 861 False 918 918 86.343000 1843 2683 1 chr5D.!!$F1 840
6 TraesCS3A01G224300 chr5D 527146818 527147389 571 True 503 503 83.217000 1846 2393 1 chr5D.!!$R1 547
7 TraesCS3A01G224300 chr2A 666986410 666987269 859 True 900 900 85.995000 1843 2683 1 chr2A.!!$R1 840
8 TraesCS3A01G224300 chr2A 764123024 764123874 850 True 870 870 85.516000 1843 2683 1 chr2A.!!$R3 840
9 TraesCS3A01G224300 chr2A 203536072 203536579 507 False 483 483 83.953000 1885 2390 1 chr2A.!!$F1 505
10 TraesCS3A01G224300 chr1D 436207192 436208049 857 False 898 898 85.947000 1844 2683 1 chr1D.!!$F3 839
11 TraesCS3A01G224300 chr5B 405742051 405742907 856 False 878 878 85.581000 1843 2680 1 chr5B.!!$F2 837
12 TraesCS3A01G224300 chr5B 289584871 289585448 577 False 588 588 85.616000 2121 2683 1 chr5B.!!$F1 562
13 TraesCS3A01G224300 chr7D 489108379 489109223 844 True 854 854 85.267000 1843 2683 1 chr7D.!!$R1 840
14 TraesCS3A01G224300 chr7D 249618368 249618939 571 False 549 549 84.615000 1843 2393 1 chr7D.!!$F2 550
15 TraesCS3A01G224300 chr7D 134828057 134828586 529 False 252 252 75.596000 1 540 1 chr7D.!!$F1 539
16 TraesCS3A01G224300 chr5A 236866009 236866849 840 True 750 750 83.179000 1843 2683 1 chr5A.!!$R2 840
17 TraesCS3A01G224300 chr3B 257779126 257779694 568 True 525 525 83.888000 1843 2393 1 chr3B.!!$R1 550
18 TraesCS3A01G224300 chr3B 407471014 407472155 1141 False 497 588 92.144333 557 1662 3 chr3B.!!$F1 1105
19 TraesCS3A01G224300 chrUn 68000625 68001165 540 False 555 555 85.820000 2162 2683 1 chrUn.!!$F1 521
20 TraesCS3A01G224300 chr2B 731464444 731464979 535 True 309 309 77.314000 4 552 1 chr2B.!!$R2 548
21 TraesCS3A01G224300 chr1B 632835361 632835908 547 True 300 300 76.744000 4 559 1 chr1B.!!$R2 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 179 0.244994 GAGCAAACGCCAGAGAGAGA 59.755 55.0 0.0 0.0 0.0 3.10 F
380 384 0.250234 TCATCCTTGCCAGAAGACGG 59.750 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 1182 0.108138 CGGTCCAGGATCCTGTTGAC 60.108 60.0 34.49 31.60 42.15 3.18 R
1709 1802 0.250770 AGATGGCTGCATGCATCGAT 60.251 50.0 22.97 19.82 45.15 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 0.385598 GCGCGGAAAACTTCTTGACC 60.386 55.000 8.83 0.00 0.00 4.02
65 66 0.942252 GCGGAAAACTTCTTGACCGT 59.058 50.000 0.00 0.00 41.92 4.83
66 67 1.070108 GCGGAAAACTTCTTGACCGTC 60.070 52.381 0.00 0.00 41.92 4.79
93 94 2.011122 TCTTCTTCTTGGAGACGGGT 57.989 50.000 0.00 0.00 0.00 5.28
96 97 1.215647 CTTCTTGGAGACGGGTCCG 59.784 63.158 7.97 7.97 39.81 4.79
119 120 0.337428 AGGGGCAAATCCTCAATGCT 59.663 50.000 0.00 0.00 38.00 3.79
125 126 4.202441 GGCAAATCCTCAATGCTAGAGAA 58.798 43.478 0.00 0.00 39.94 2.87
126 127 4.036144 GGCAAATCCTCAATGCTAGAGAAC 59.964 45.833 0.00 0.00 39.94 3.01
127 128 4.637534 GCAAATCCTCAATGCTAGAGAACA 59.362 41.667 0.00 0.00 37.12 3.18
136 139 6.851363 CTCAATGCTAGAGAACAATGGAGACA 60.851 42.308 0.00 0.00 39.20 3.41
143 146 2.170166 GAACAATGGAGACAATGGGCA 58.830 47.619 0.00 0.00 45.77 5.36
150 153 0.322816 GAGACAATGGGCAAGCTGGA 60.323 55.000 0.00 0.00 0.00 3.86
162 165 2.592102 AAGCTGGAAGATTGGAGCAA 57.408 45.000 0.00 0.00 43.53 3.91
173 176 1.004560 TGGAGCAAACGCCAGAGAG 60.005 57.895 0.00 0.00 41.32 3.20
176 179 0.244994 GAGCAAACGCCAGAGAGAGA 59.755 55.000 0.00 0.00 0.00 3.10
197 200 3.661648 GCCCCTCACACCATGGGT 61.662 66.667 18.09 8.43 40.36 4.51
220 223 2.358737 CAACCCTCGCTCCCACAC 60.359 66.667 0.00 0.00 0.00 3.82
237 240 3.458163 CTCCCAGCCGCGTCCTTA 61.458 66.667 4.92 0.00 0.00 2.69
238 241 3.432051 CTCCCAGCCGCGTCCTTAG 62.432 68.421 4.92 0.00 0.00 2.18
246 249 4.832608 GCGTCCTTAGGCCCACCG 62.833 72.222 0.00 0.00 42.76 4.94
288 292 3.005791 TGAGCAAGTCACGATCTTCAGAA 59.994 43.478 0.00 0.00 0.00 3.02
293 297 2.300152 AGTCACGATCTTCAGAAGCCAA 59.700 45.455 5.15 0.00 0.00 4.52
301 305 2.909006 TCTTCAGAAGCCAAGTCATCCT 59.091 45.455 5.15 0.00 0.00 3.24
306 310 3.196469 CAGAAGCCAAGTCATCCTACTCA 59.804 47.826 0.00 0.00 0.00 3.41
324 328 3.256558 CTCAGACTGCGTGAATCAATGA 58.743 45.455 0.00 0.00 0.00 2.57
331 335 3.337358 TGCGTGAATCAATGATCAGTGT 58.663 40.909 21.49 4.50 0.00 3.55
370 374 1.245732 GAGGCCATCATCATCCTTGC 58.754 55.000 5.01 0.00 0.00 4.01
375 379 2.940158 CCATCATCATCCTTGCCAGAA 58.060 47.619 0.00 0.00 0.00 3.02
377 381 3.434596 CCATCATCATCCTTGCCAGAAGA 60.435 47.826 0.00 0.00 0.00 2.87
379 383 1.938577 CATCATCCTTGCCAGAAGACG 59.061 52.381 0.00 0.00 0.00 4.18
380 384 0.250234 TCATCCTTGCCAGAAGACGG 59.750 55.000 0.00 0.00 0.00 4.79
386 390 4.821589 GCCAGAAGACGGGCGGAG 62.822 72.222 0.00 0.00 45.96 4.63
476 480 1.668294 ACCAGCAGAGGTGAAGACG 59.332 57.895 0.00 0.00 41.30 4.18
517 521 3.316029 CACAGTGAATCAACACACCACAT 59.684 43.478 0.00 0.00 42.45 3.21
554 558 2.258591 GGAACGAGCAGCGACTCA 59.741 61.111 5.99 0.00 44.57 3.41
610 614 3.058432 GTCTACTTGCGATCCTGCGTATA 60.058 47.826 0.00 0.00 37.81 1.47
613 617 3.318017 ACTTGCGATCCTGCGTATAATC 58.682 45.455 0.00 0.00 37.81 1.75
759 763 2.289002 GAGGATAAATGCCAAGCTGTCG 59.711 50.000 0.00 0.00 0.00 4.35
761 765 2.223340 GGATAAATGCCAAGCTGTCGTG 60.223 50.000 0.00 0.00 0.00 4.35
771 775 1.732941 AGCTGTCGTGTGTGTTTGAA 58.267 45.000 0.00 0.00 0.00 2.69
807 811 5.009854 TGATGCTCTGTTATGTTCGATCA 57.990 39.130 0.00 0.00 0.00 2.92
824 828 2.978156 TCATCCCAAAAGCCAGAACT 57.022 45.000 0.00 0.00 0.00 3.01
830 834 2.500229 CCAAAAGCCAGAACTACGGAA 58.500 47.619 0.00 0.00 0.00 4.30
831 835 2.882137 CCAAAAGCCAGAACTACGGAAA 59.118 45.455 0.00 0.00 0.00 3.13
832 836 3.506067 CCAAAAGCCAGAACTACGGAAAT 59.494 43.478 0.00 0.00 0.00 2.17
833 837 4.022329 CCAAAAGCCAGAACTACGGAAATT 60.022 41.667 0.00 0.00 0.00 1.82
834 838 5.182380 CCAAAAGCCAGAACTACGGAAATTA 59.818 40.000 0.00 0.00 0.00 1.40
835 839 6.127730 CCAAAAGCCAGAACTACGGAAATTAT 60.128 38.462 0.00 0.00 0.00 1.28
836 840 7.312899 CAAAAGCCAGAACTACGGAAATTATT 58.687 34.615 0.00 0.00 0.00 1.40
837 841 7.462571 AAAGCCAGAACTACGGAAATTATTT 57.537 32.000 0.00 0.00 0.00 1.40
838 842 6.436843 AGCCAGAACTACGGAAATTATTTG 57.563 37.500 0.00 0.00 0.00 2.32
839 843 6.177610 AGCCAGAACTACGGAAATTATTTGA 58.822 36.000 0.00 0.00 0.00 2.69
840 844 6.093633 AGCCAGAACTACGGAAATTATTTGAC 59.906 38.462 0.00 0.00 0.00 3.18
841 845 6.093633 GCCAGAACTACGGAAATTATTTGACT 59.906 38.462 0.00 0.00 0.00 3.41
842 846 7.279313 GCCAGAACTACGGAAATTATTTGACTA 59.721 37.037 0.00 0.00 0.00 2.59
843 847 9.158233 CCAGAACTACGGAAATTATTTGACTAA 57.842 33.333 0.00 0.00 0.00 2.24
845 849 9.379791 AGAACTACGGAAATTATTTGACTAAGG 57.620 33.333 0.00 0.00 0.00 2.69
846 850 9.374838 GAACTACGGAAATTATTTGACTAAGGA 57.625 33.333 0.00 0.00 0.00 3.36
847 851 9.729281 AACTACGGAAATTATTTGACTAAGGAA 57.271 29.630 0.00 0.00 0.00 3.36
848 852 9.729281 ACTACGGAAATTATTTGACTAAGGAAA 57.271 29.630 0.00 0.00 0.00 3.13
851 855 8.520351 ACGGAAATTATTTGACTAAGGAAAAGG 58.480 33.333 0.00 0.00 0.00 3.11
852 856 8.736244 CGGAAATTATTTGACTAAGGAAAAGGA 58.264 33.333 0.00 0.00 0.00 3.36
857 861 9.908152 ATTATTTGACTAAGGAAAAGGAAAACG 57.092 29.630 0.00 0.00 0.00 3.60
858 862 7.576861 ATTTGACTAAGGAAAAGGAAAACGA 57.423 32.000 0.00 0.00 0.00 3.85
859 863 5.996669 TGACTAAGGAAAAGGAAAACGAC 57.003 39.130 0.00 0.00 0.00 4.34
860 864 5.430007 TGACTAAGGAAAAGGAAAACGACA 58.570 37.500 0.00 0.00 0.00 4.35
861 865 6.059484 TGACTAAGGAAAAGGAAAACGACAT 58.941 36.000 0.00 0.00 0.00 3.06
862 866 6.017440 TGACTAAGGAAAAGGAAAACGACATG 60.017 38.462 0.00 0.00 0.00 3.21
863 867 5.826208 ACTAAGGAAAAGGAAAACGACATGT 59.174 36.000 0.00 0.00 0.00 3.21
864 868 4.830826 AGGAAAAGGAAAACGACATGTC 57.169 40.909 16.21 16.21 0.00 3.06
865 869 4.461198 AGGAAAAGGAAAACGACATGTCT 58.539 39.130 22.95 4.58 0.00 3.41
866 870 4.887655 AGGAAAAGGAAAACGACATGTCTT 59.112 37.500 22.95 11.83 0.00 3.01
867 871 5.008712 AGGAAAAGGAAAACGACATGTCTTC 59.991 40.000 22.95 18.39 0.00 2.87
868 872 5.220970 GGAAAAGGAAAACGACATGTCTTCA 60.221 40.000 22.95 0.00 0.00 3.02
869 873 4.813296 AAGGAAAACGACATGTCTTCAC 57.187 40.909 22.95 13.13 0.00 3.18
870 874 3.139077 AGGAAAACGACATGTCTTCACC 58.861 45.455 22.95 17.63 0.00 4.02
871 875 2.875933 GGAAAACGACATGTCTTCACCA 59.124 45.455 22.95 0.00 0.00 4.17
872 876 3.303791 GGAAAACGACATGTCTTCACCAC 60.304 47.826 22.95 8.57 0.00 4.16
873 877 2.910688 AACGACATGTCTTCACCACT 57.089 45.000 22.95 0.00 0.00 4.00
874 878 4.330944 AAACGACATGTCTTCACCACTA 57.669 40.909 22.95 0.00 0.00 2.74
875 879 3.577649 ACGACATGTCTTCACCACTAG 57.422 47.619 22.95 6.41 0.00 2.57
876 880 2.891580 ACGACATGTCTTCACCACTAGT 59.108 45.455 22.95 7.04 0.00 2.57
877 881 3.321111 ACGACATGTCTTCACCACTAGTT 59.679 43.478 22.95 0.00 0.00 2.24
878 882 4.202223 ACGACATGTCTTCACCACTAGTTT 60.202 41.667 22.95 0.00 0.00 2.66
879 883 5.010314 ACGACATGTCTTCACCACTAGTTTA 59.990 40.000 22.95 0.00 0.00 2.01
883 887 8.773404 ACATGTCTTCACCACTAGTTTATTAC 57.227 34.615 0.00 0.00 0.00 1.89
890 894 9.733219 CTTCACCACTAGTTTATTACTACTAGC 57.267 37.037 8.71 0.00 44.89 3.42
892 896 9.417561 TCACCACTAGTTTATTACTACTAGCAT 57.582 33.333 8.71 0.00 44.89 3.79
895 899 8.979574 CCACTAGTTTATTACTACTAGCATTGC 58.020 37.037 0.00 0.00 44.89 3.56
897 901 6.526566 AGTTTATTACTACTAGCATTGCGC 57.473 37.500 0.00 0.00 36.57 6.09
919 923 4.726416 CCAACTTTGCACACATCATACTC 58.274 43.478 0.00 0.00 0.00 2.59
920 924 4.379813 CCAACTTTGCACACATCATACTCC 60.380 45.833 0.00 0.00 0.00 3.85
935 939 9.944376 ACATCATACTCCTAAATTATGCGTATT 57.056 29.630 0.00 0.00 0.00 1.89
1035 1041 0.251341 AGGCGCAACCATTTCTCCTT 60.251 50.000 10.83 0.00 43.14 3.36
1074 1080 1.483827 CTGCATCTTCTACCTCCTGCA 59.516 52.381 0.00 0.00 37.93 4.41
1176 1182 3.905678 CCTACGAGCTGGCCTCCG 61.906 72.222 3.32 4.65 37.27 4.63
1208 1214 3.755628 GACCGCCACCTCGCTGTA 61.756 66.667 0.00 0.00 0.00 2.74
1214 1220 2.650116 CCACCTCGCTGTAGCTGGT 61.650 63.158 11.02 11.02 42.92 4.00
1223 1229 3.450115 GTAGCTGGTCCGCCGTCT 61.450 66.667 0.00 0.00 37.67 4.18
1274 1286 0.850100 TGGAGGGAAAGAACCAGCAA 59.150 50.000 0.00 0.00 0.00 3.91
1460 1546 2.425312 TCGATCCTCTCTTCTGTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
1504 1592 7.012327 TCTCTATGGATTTTCTTGGTTATTGCG 59.988 37.037 0.00 0.00 0.00 4.85
1529 1619 7.703197 CGGTTTTATGTGTAAAAGAAACAGGTT 59.297 33.333 0.00 0.00 39.69 3.50
1532 1622 9.575783 TTTTATGTGTAAAAGAAACAGGTTGTC 57.424 29.630 0.00 0.00 35.45 3.18
1541 1631 8.926715 AAAAGAAACAGGTTGTCTTTTGTATC 57.073 30.769 20.92 1.85 45.35 2.24
1662 1755 6.757237 TGGTTGAACAAATATGCACTTGATT 58.243 32.000 10.98 3.46 0.00 2.57
1663 1756 7.215789 TGGTTGAACAAATATGCACTTGATTT 58.784 30.769 10.98 2.79 0.00 2.17
1664 1757 7.714377 TGGTTGAACAAATATGCACTTGATTTT 59.286 29.630 10.98 0.00 0.00 1.82
1665 1758 9.202273 GGTTGAACAAATATGCACTTGATTTTA 57.798 29.630 10.98 0.00 0.00 1.52
1694 1787 9.825109 TTATTTTTGAAAAGGAGGTTAAACCAG 57.175 29.630 0.00 0.00 41.95 4.00
1695 1788 4.929819 TTGAAAAGGAGGTTAAACCAGC 57.070 40.909 0.00 0.00 41.95 4.85
1696 1789 2.882137 TGAAAAGGAGGTTAAACCAGCG 59.118 45.455 0.00 0.00 41.95 5.18
1697 1790 1.905637 AAAGGAGGTTAAACCAGCGG 58.094 50.000 0.00 0.00 41.95 5.52
1698 1791 0.608308 AAGGAGGTTAAACCAGCGGC 60.608 55.000 0.00 0.00 41.95 6.53
1699 1792 2.044555 GGAGGTTAAACCAGCGGCC 61.045 63.158 0.00 0.00 41.95 6.13
1700 1793 1.002502 GAGGTTAAACCAGCGGCCT 60.003 57.895 0.00 0.00 41.95 5.19
1701 1794 1.002502 AGGTTAAACCAGCGGCCTC 60.003 57.895 0.00 0.00 41.95 4.70
1702 1795 1.002502 GGTTAAACCAGCGGCCTCT 60.003 57.895 0.00 0.00 38.42 3.69
1703 1796 1.305930 GGTTAAACCAGCGGCCTCTG 61.306 60.000 16.16 16.16 38.42 3.35
1704 1797 0.605589 GTTAAACCAGCGGCCTCTGT 60.606 55.000 21.00 5.80 32.32 3.41
1705 1798 0.978151 TTAAACCAGCGGCCTCTGTA 59.022 50.000 21.00 4.79 32.32 2.74
1706 1799 1.200519 TAAACCAGCGGCCTCTGTAT 58.799 50.000 21.00 6.46 32.32 2.29
1707 1800 0.328258 AAACCAGCGGCCTCTGTATT 59.672 50.000 21.00 12.12 32.32 1.89
1708 1801 1.200519 AACCAGCGGCCTCTGTATTA 58.799 50.000 21.00 0.00 32.32 0.98
1709 1802 1.200519 ACCAGCGGCCTCTGTATTAA 58.799 50.000 21.00 0.00 32.32 1.40
1710 1803 1.768870 ACCAGCGGCCTCTGTATTAAT 59.231 47.619 21.00 0.00 32.32 1.40
1711 1804 2.224305 ACCAGCGGCCTCTGTATTAATC 60.224 50.000 21.00 0.00 32.32 1.75
1712 1805 2.061773 CAGCGGCCTCTGTATTAATCG 58.938 52.381 14.89 0.00 0.00 3.34
1713 1806 1.961394 AGCGGCCTCTGTATTAATCGA 59.039 47.619 0.00 0.00 0.00 3.59
1714 1807 2.563179 AGCGGCCTCTGTATTAATCGAT 59.437 45.455 0.00 0.00 0.00 3.59
1715 1808 2.668457 GCGGCCTCTGTATTAATCGATG 59.332 50.000 0.00 0.00 0.00 3.84
1716 1809 2.668457 CGGCCTCTGTATTAATCGATGC 59.332 50.000 0.00 0.00 0.00 3.91
1717 1810 3.664107 GGCCTCTGTATTAATCGATGCA 58.336 45.455 0.00 0.00 0.00 3.96
1718 1811 4.256920 GGCCTCTGTATTAATCGATGCAT 58.743 43.478 0.00 0.00 0.00 3.96
1719 1812 4.093998 GGCCTCTGTATTAATCGATGCATG 59.906 45.833 2.46 0.00 0.00 4.06
1720 1813 4.436584 GCCTCTGTATTAATCGATGCATGC 60.437 45.833 11.82 11.82 0.00 4.06
1721 1814 4.692155 CCTCTGTATTAATCGATGCATGCA 59.308 41.667 25.04 25.04 0.00 3.96
1722 1815 5.163884 CCTCTGTATTAATCGATGCATGCAG 60.164 44.000 26.69 20.44 32.38 4.41
1723 1816 4.152938 TCTGTATTAATCGATGCATGCAGC 59.847 41.667 25.69 25.69 45.96 5.25
1724 1817 3.189080 TGTATTAATCGATGCATGCAGCC 59.811 43.478 28.76 19.54 44.83 4.85
1725 1818 1.677942 TTAATCGATGCATGCAGCCA 58.322 45.000 28.76 18.55 44.83 4.75
1726 1819 1.900245 TAATCGATGCATGCAGCCAT 58.100 45.000 28.76 20.10 44.83 4.40
1727 1820 0.596577 AATCGATGCATGCAGCCATC 59.403 50.000 28.76 18.37 44.83 3.51
1728 1821 0.250770 ATCGATGCATGCAGCCATCT 60.251 50.000 28.76 9.83 44.83 2.90
1729 1822 0.464916 TCGATGCATGCAGCCATCTT 60.465 50.000 28.76 9.02 44.83 2.40
1730 1823 0.384309 CGATGCATGCAGCCATCTTT 59.616 50.000 28.76 8.20 44.83 2.52
1731 1824 1.605232 CGATGCATGCAGCCATCTTTA 59.395 47.619 28.76 0.00 44.83 1.85
1732 1825 2.228103 CGATGCATGCAGCCATCTTTAT 59.772 45.455 28.76 6.59 44.83 1.40
1733 1826 3.305131 CGATGCATGCAGCCATCTTTATT 60.305 43.478 28.76 6.01 44.83 1.40
1734 1827 4.083164 CGATGCATGCAGCCATCTTTATTA 60.083 41.667 28.76 0.00 44.83 0.98
1735 1828 5.563280 CGATGCATGCAGCCATCTTTATTAA 60.563 40.000 28.76 0.00 44.83 1.40
1736 1829 5.794726 TGCATGCAGCCATCTTTATTAAT 57.205 34.783 18.46 0.00 44.83 1.40
1737 1830 6.164417 TGCATGCAGCCATCTTTATTAATT 57.836 33.333 18.46 0.00 44.83 1.40
1738 1831 7.287512 TGCATGCAGCCATCTTTATTAATTA 57.712 32.000 18.46 0.00 44.83 1.40
1739 1832 7.147312 TGCATGCAGCCATCTTTATTAATTAC 58.853 34.615 18.46 0.00 44.83 1.89
1740 1833 7.014518 TGCATGCAGCCATCTTTATTAATTACT 59.985 33.333 18.46 0.00 44.83 2.24
1741 1834 7.869429 GCATGCAGCCATCTTTATTAATTACTT 59.131 33.333 14.21 0.00 37.23 2.24
1742 1835 9.403110 CATGCAGCCATCTTTATTAATTACTTC 57.597 33.333 0.00 0.00 0.00 3.01
1743 1836 7.940850 TGCAGCCATCTTTATTAATTACTTCC 58.059 34.615 0.00 0.00 0.00 3.46
1744 1837 7.779798 TGCAGCCATCTTTATTAATTACTTCCT 59.220 33.333 0.00 0.00 0.00 3.36
1745 1838 8.293157 GCAGCCATCTTTATTAATTACTTCCTC 58.707 37.037 0.00 0.00 0.00 3.71
1746 1839 8.787852 CAGCCATCTTTATTAATTACTTCCTCC 58.212 37.037 0.00 0.00 0.00 4.30
1747 1840 7.661847 AGCCATCTTTATTAATTACTTCCTCCG 59.338 37.037 0.00 0.00 0.00 4.63
1748 1841 7.444487 GCCATCTTTATTAATTACTTCCTCCGT 59.556 37.037 0.00 0.00 0.00 4.69
1749 1842 9.338622 CCATCTTTATTAATTACTTCCTCCGTT 57.661 33.333 0.00 0.00 0.00 4.44
1752 1845 9.729281 TCTTTATTAATTACTTCCTCCGTTTGT 57.271 29.630 0.00 0.00 0.00 2.83
1762 1855 9.558396 TTACTTCCTCCGTTTGTTTTTATTAGA 57.442 29.630 0.00 0.00 0.00 2.10
1763 1856 7.868775 ACTTCCTCCGTTTGTTTTTATTAGAC 58.131 34.615 0.00 0.00 0.00 2.59
1764 1857 6.470557 TCCTCCGTTTGTTTTTATTAGACG 57.529 37.500 0.00 0.00 0.00 4.18
1765 1858 5.990996 TCCTCCGTTTGTTTTTATTAGACGT 59.009 36.000 0.00 0.00 0.00 4.34
1766 1859 6.482973 TCCTCCGTTTGTTTTTATTAGACGTT 59.517 34.615 0.00 0.00 0.00 3.99
1767 1860 6.793680 CCTCCGTTTGTTTTTATTAGACGTTC 59.206 38.462 0.00 0.00 0.00 3.95
1768 1861 7.244166 TCCGTTTGTTTTTATTAGACGTTCA 57.756 32.000 0.00 0.00 0.00 3.18
1769 1862 7.346695 TCCGTTTGTTTTTATTAGACGTTCAG 58.653 34.615 0.00 0.00 0.00 3.02
1770 1863 7.224362 TCCGTTTGTTTTTATTAGACGTTCAGA 59.776 33.333 0.00 0.00 0.00 3.27
1771 1864 7.319615 CCGTTTGTTTTTATTAGACGTTCAGAC 59.680 37.037 0.00 0.00 0.00 3.51
1772 1865 7.847078 CGTTTGTTTTTATTAGACGTTCAGACA 59.153 33.333 0.00 0.00 0.00 3.41
1773 1866 9.493206 GTTTGTTTTTATTAGACGTTCAGACAA 57.507 29.630 0.00 0.00 0.00 3.18
1774 1867 9.493206 TTTGTTTTTATTAGACGTTCAGACAAC 57.507 29.630 0.00 0.00 0.00 3.32
1775 1868 8.428186 TGTTTTTATTAGACGTTCAGACAACT 57.572 30.769 0.00 0.00 0.00 3.16
1776 1869 8.885722 TGTTTTTATTAGACGTTCAGACAACTT 58.114 29.630 0.00 0.00 0.00 2.66
1777 1870 9.155053 GTTTTTATTAGACGTTCAGACAACTTG 57.845 33.333 0.00 0.00 0.00 3.16
1778 1871 8.428186 TTTTATTAGACGTTCAGACAACTTGT 57.572 30.769 0.00 0.00 0.00 3.16
1779 1872 8.428186 TTTATTAGACGTTCAGACAACTTGTT 57.572 30.769 0.00 0.00 0.00 2.83
1780 1873 6.920569 ATTAGACGTTCAGACAACTTGTTT 57.079 33.333 0.00 0.00 0.00 2.83
1781 1874 6.730960 TTAGACGTTCAGACAACTTGTTTT 57.269 33.333 0.00 0.00 0.00 2.43
1782 1875 4.969816 AGACGTTCAGACAACTTGTTTTG 58.030 39.130 0.00 0.00 0.00 2.44
1783 1876 4.454504 AGACGTTCAGACAACTTGTTTTGT 59.545 37.500 0.00 0.00 42.55 2.83
1784 1877 4.472286 ACGTTCAGACAACTTGTTTTGTG 58.528 39.130 0.00 0.00 39.88 3.33
1785 1878 3.300590 CGTTCAGACAACTTGTTTTGTGC 59.699 43.478 0.00 0.00 39.88 4.57
1786 1879 4.485163 GTTCAGACAACTTGTTTTGTGCT 58.515 39.130 0.00 0.00 39.88 4.40
1787 1880 4.095410 TCAGACAACTTGTTTTGTGCTG 57.905 40.909 0.00 0.00 39.88 4.41
1788 1881 3.505680 TCAGACAACTTGTTTTGTGCTGT 59.494 39.130 0.00 0.00 39.88 4.40
1789 1882 4.022416 TCAGACAACTTGTTTTGTGCTGTT 60.022 37.500 0.00 0.00 39.88 3.16
1790 1883 4.685628 CAGACAACTTGTTTTGTGCTGTTT 59.314 37.500 0.00 0.00 39.88 2.83
1791 1884 5.177327 CAGACAACTTGTTTTGTGCTGTTTT 59.823 36.000 0.00 0.00 39.88 2.43
1792 1885 5.757808 AGACAACTTGTTTTGTGCTGTTTTT 59.242 32.000 0.00 0.00 39.88 1.94
1793 1886 5.746539 ACAACTTGTTTTGTGCTGTTTTTG 58.253 33.333 0.00 0.00 38.31 2.44
1794 1887 5.525378 ACAACTTGTTTTGTGCTGTTTTTGA 59.475 32.000 0.00 0.00 38.31 2.69
1795 1888 6.037610 ACAACTTGTTTTGTGCTGTTTTTGAA 59.962 30.769 0.00 0.00 38.31 2.69
1796 1889 5.984627 ACTTGTTTTGTGCTGTTTTTGAAC 58.015 33.333 0.00 0.00 0.00 3.18
1797 1890 5.525378 ACTTGTTTTGTGCTGTTTTTGAACA 59.475 32.000 0.00 0.00 0.00 3.18
1808 1901 6.859715 CTGTTTTTGAACAGTGTCTGAAAG 57.140 37.500 10.34 0.00 43.80 2.62
1809 1902 6.325919 TGTTTTTGAACAGTGTCTGAAAGT 57.674 33.333 0.00 0.00 35.18 2.66
1810 1903 6.378582 TGTTTTTGAACAGTGTCTGAAAGTC 58.621 36.000 0.00 0.00 35.18 3.01
1811 1904 6.206634 TGTTTTTGAACAGTGTCTGAAAGTCT 59.793 34.615 0.00 0.00 35.18 3.24
1812 1905 7.389330 TGTTTTTGAACAGTGTCTGAAAGTCTA 59.611 33.333 0.00 0.00 35.18 2.59
1813 1906 7.915293 TTTTGAACAGTGTCTGAAAGTCTAA 57.085 32.000 0.00 0.00 35.18 2.10
1814 1907 7.915293 TTTGAACAGTGTCTGAAAGTCTAAA 57.085 32.000 0.00 0.00 35.18 1.85
1815 1908 7.915293 TTGAACAGTGTCTGAAAGTCTAAAA 57.085 32.000 0.00 0.00 35.18 1.52
1816 1909 8.506168 TTGAACAGTGTCTGAAAGTCTAAAAT 57.494 30.769 0.00 0.00 35.18 1.82
1817 1910 7.919690 TGAACAGTGTCTGAAAGTCTAAAATG 58.080 34.615 0.00 0.00 35.18 2.32
1818 1911 7.552687 TGAACAGTGTCTGAAAGTCTAAAATGT 59.447 33.333 0.00 0.00 35.18 2.71
1819 1912 7.484035 ACAGTGTCTGAAAGTCTAAAATGTC 57.516 36.000 3.70 0.00 35.18 3.06
1820 1913 7.275920 ACAGTGTCTGAAAGTCTAAAATGTCT 58.724 34.615 3.70 0.00 35.18 3.41
1821 1914 7.770897 ACAGTGTCTGAAAGTCTAAAATGTCTT 59.229 33.333 3.70 0.00 35.18 3.01
1822 1915 9.261180 CAGTGTCTGAAAGTCTAAAATGTCTTA 57.739 33.333 0.00 0.00 32.44 2.10
1924 2030 8.109634 ACCTACAAATTTGATAATGAGGAGTGT 58.890 33.333 24.64 0.06 0.00 3.55
1957 2063 4.426416 CATATCTAAAACCGGTGTCGTCA 58.574 43.478 8.52 0.00 33.95 4.35
1972 2078 1.204704 TCGTCACTGATCCATCCACAC 59.795 52.381 0.00 0.00 0.00 3.82
2001 2107 1.073284 AGGACTAACAACCGGTGCAAT 59.927 47.619 8.52 0.00 0.00 3.56
2020 2126 2.736144 TAGACCTAAAGCACACACCG 57.264 50.000 0.00 0.00 0.00 4.94
2027 2133 1.533625 AAAGCACACACCGCATACAT 58.466 45.000 0.00 0.00 0.00 2.29
2040 2146 5.290158 CACCGCATACATACGTTTTAGAAGT 59.710 40.000 0.00 0.00 0.00 3.01
2060 2167 1.137675 TCGCCATCTTCATCAGACCAG 59.862 52.381 0.00 0.00 32.83 4.00
2073 2180 1.134965 CAGACCAGTGACCGATCTTCC 60.135 57.143 0.00 0.00 0.00 3.46
2108 2216 0.982852 TCATCCTTGCCAGTCCGGAT 60.983 55.000 7.81 0.00 36.74 4.18
2174 2283 4.094684 GTCATCCAGACGCGAAGG 57.905 61.111 15.93 11.80 37.53 3.46
2188 2297 2.200899 GCGAAGGCTCTGAAAGATCTC 58.799 52.381 0.00 0.00 45.62 2.75
2254 2363 2.110967 CGGCCAGGCATGACTTGAG 61.111 63.158 15.19 0.00 0.00 3.02
2293 2421 0.179089 CATCCTGCCTCTGTCTTCCG 60.179 60.000 0.00 0.00 0.00 4.30
2294 2422 0.324738 ATCCTGCCTCTGTCTTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
2297 2425 1.867919 CTGCCTCTGTCTTCCGACGT 61.868 60.000 0.00 0.00 43.21 4.34
2417 2549 2.497138 CATCACCAGCAACTGTCAAGA 58.503 47.619 0.00 0.00 0.00 3.02
2423 2555 2.023673 CAGCAACTGTCAAGAACCCAA 58.976 47.619 0.00 0.00 0.00 4.12
2454 2586 1.152030 ACCACTCAGCCCTCAAGGA 60.152 57.895 0.00 0.00 38.24 3.36
2458 2590 0.178921 ACTCAGCCCTCAAGGAGACA 60.179 55.000 0.00 0.00 38.24 3.41
2461 2593 1.920835 AGCCCTCAAGGAGACACCC 60.921 63.158 0.00 0.00 40.05 4.61
2555 2693 1.135960 GGGGGAATGAAGGAGGAGAG 58.864 60.000 0.00 0.00 0.00 3.20
2594 2732 1.463553 AAGAAAAGCGGTGCCCTTGG 61.464 55.000 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.110823 CGGTCAAGAAGTTTTCCGCG 60.111 55.000 0.00 0.00 0.00 6.46
63 64 3.670991 CCAAGAAGAAGAAGAAGTCGACG 59.329 47.826 10.46 0.00 0.00 5.12
65 66 4.827835 TCTCCAAGAAGAAGAAGAAGTCGA 59.172 41.667 0.00 0.00 0.00 4.20
66 67 4.920927 GTCTCCAAGAAGAAGAAGAAGTCG 59.079 45.833 0.00 0.00 0.00 4.18
93 94 2.362375 GATTTGCCCCTTGCCGGA 60.362 61.111 5.05 0.00 40.16 5.14
96 97 0.904394 TTGAGGATTTGCCCCTTGCC 60.904 55.000 0.00 0.00 40.16 4.52
100 101 0.337428 AGCATTGAGGATTTGCCCCT 59.663 50.000 0.00 0.00 37.07 4.79
105 106 6.748333 TTGTTCTCTAGCATTGAGGATTTG 57.252 37.500 0.00 0.00 32.78 2.32
107 108 5.826737 CCATTGTTCTCTAGCATTGAGGATT 59.173 40.000 0.00 0.00 32.78 3.01
119 120 4.626287 GCCCATTGTCTCCATTGTTCTCTA 60.626 45.833 0.00 0.00 0.00 2.43
125 126 2.173519 CTTGCCCATTGTCTCCATTGT 58.826 47.619 0.00 0.00 0.00 2.71
126 127 1.134907 GCTTGCCCATTGTCTCCATTG 60.135 52.381 0.00 0.00 0.00 2.82
127 128 1.188863 GCTTGCCCATTGTCTCCATT 58.811 50.000 0.00 0.00 0.00 3.16
136 139 1.829222 CAATCTTCCAGCTTGCCCATT 59.171 47.619 0.00 0.00 0.00 3.16
138 141 0.612732 CCAATCTTCCAGCTTGCCCA 60.613 55.000 0.00 0.00 0.00 5.36
143 146 2.560105 GTTTGCTCCAATCTTCCAGCTT 59.440 45.455 0.00 0.00 32.76 3.74
150 153 0.883833 CTGGCGTTTGCTCCAATCTT 59.116 50.000 0.00 0.00 42.25 2.40
162 165 1.882989 GCACCTCTCTCTCTGGCGTT 61.883 60.000 0.00 0.00 0.00 4.84
189 192 2.672996 GTTGCTGCGACCCATGGT 60.673 61.111 11.73 0.00 39.44 3.55
197 200 4.742201 GAGCGAGGGTTGCTGCGA 62.742 66.667 0.00 0.00 44.18 5.10
209 212 2.997315 CTGGGAGTGTGGGAGCGA 60.997 66.667 0.00 0.00 0.00 4.93
220 223 3.432051 CTAAGGACGCGGCTGGGAG 62.432 68.421 13.91 0.00 0.00 4.30
255 259 1.396301 GACTTGCTCAAGGAGAATGCG 59.604 52.381 13.48 0.00 42.53 4.73
288 292 2.763448 GTCTGAGTAGGATGACTTGGCT 59.237 50.000 0.00 0.00 0.00 4.75
293 297 2.020720 CGCAGTCTGAGTAGGATGACT 58.979 52.381 3.32 0.00 39.98 3.41
301 305 3.934457 TTGATTCACGCAGTCTGAGTA 57.066 42.857 9.04 0.00 41.61 2.59
306 310 3.865446 TGATCATTGATTCACGCAGTCT 58.135 40.909 0.00 0.00 41.61 3.24
324 328 1.734655 ACTCCAACCCTGACACTGAT 58.265 50.000 0.00 0.00 0.00 2.90
331 335 1.752198 CCGACAACTCCAACCCTGA 59.248 57.895 0.00 0.00 0.00 3.86
370 374 4.148825 CCTCCGCCCGTCTTCTGG 62.149 72.222 0.00 0.00 0.00 3.86
449 453 4.704833 TCTGCTGGTGGCTTCCGC 62.705 66.667 0.00 0.00 42.39 5.54
469 473 1.070786 GGCTTGGTGGACGTCTTCA 59.929 57.895 16.46 8.58 0.00 3.02
491 495 1.597195 TGTGTTGATTCACTGTGCGTC 59.403 47.619 2.12 4.27 38.90 5.19
500 504 3.507162 AGGATGTGGTGTGTTGATTCA 57.493 42.857 0.00 0.00 0.00 2.57
502 506 3.758554 GCTTAGGATGTGGTGTGTTGATT 59.241 43.478 0.00 0.00 0.00 2.57
517 521 3.081409 GCCCAGTCCGGCTTAGGA 61.081 66.667 0.00 0.00 46.10 2.94
537 541 1.803519 CTGAGTCGCTGCTCGTTCC 60.804 63.158 0.00 0.00 38.28 3.62
542 546 1.091537 ACTACTCTGAGTCGCTGCTC 58.908 55.000 14.62 0.00 36.12 4.26
552 556 1.068588 ACTTGCACGCAACTACTCTGA 59.931 47.619 0.00 0.00 0.00 3.27
554 558 3.254060 CATACTTGCACGCAACTACTCT 58.746 45.455 0.00 0.00 0.00 3.24
610 614 4.210120 GCTTCGCAGATCATCGTAAAGATT 59.790 41.667 0.00 0.00 34.44 2.40
613 617 3.060674 CAGCTTCGCAGATCATCGTAAAG 60.061 47.826 0.00 0.27 35.04 1.85
743 747 1.535028 CACACGACAGCTTGGCATTTA 59.465 47.619 0.00 0.00 0.00 1.40
759 763 3.429085 CAGCTGTTCTTCAAACACACAC 58.571 45.455 5.25 0.00 0.00 3.82
761 765 2.423538 ACCAGCTGTTCTTCAAACACAC 59.576 45.455 13.81 0.00 0.00 3.82
807 811 2.618045 CCGTAGTTCTGGCTTTTGGGAT 60.618 50.000 0.00 0.00 0.00 3.85
831 835 9.908152 CGTTTTCCTTTTCCTTAGTCAAATAAT 57.092 29.630 0.00 0.00 0.00 1.28
832 836 9.122779 TCGTTTTCCTTTTCCTTAGTCAAATAA 57.877 29.630 0.00 0.00 0.00 1.40
833 837 8.562052 GTCGTTTTCCTTTTCCTTAGTCAAATA 58.438 33.333 0.00 0.00 0.00 1.40
834 838 7.067737 TGTCGTTTTCCTTTTCCTTAGTCAAAT 59.932 33.333 0.00 0.00 0.00 2.32
835 839 6.374894 TGTCGTTTTCCTTTTCCTTAGTCAAA 59.625 34.615 0.00 0.00 0.00 2.69
836 840 5.881443 TGTCGTTTTCCTTTTCCTTAGTCAA 59.119 36.000 0.00 0.00 0.00 3.18
837 841 5.430007 TGTCGTTTTCCTTTTCCTTAGTCA 58.570 37.500 0.00 0.00 0.00 3.41
838 842 5.996669 TGTCGTTTTCCTTTTCCTTAGTC 57.003 39.130 0.00 0.00 0.00 2.59
839 843 5.826208 ACATGTCGTTTTCCTTTTCCTTAGT 59.174 36.000 0.00 0.00 0.00 2.24
840 844 6.204882 AGACATGTCGTTTTCCTTTTCCTTAG 59.795 38.462 19.85 0.00 34.09 2.18
841 845 6.059484 AGACATGTCGTTTTCCTTTTCCTTA 58.941 36.000 19.85 0.00 34.09 2.69
842 846 4.887655 AGACATGTCGTTTTCCTTTTCCTT 59.112 37.500 19.85 0.00 34.09 3.36
843 847 4.461198 AGACATGTCGTTTTCCTTTTCCT 58.539 39.130 19.85 0.00 34.09 3.36
844 848 4.830826 AGACATGTCGTTTTCCTTTTCC 57.169 40.909 19.85 0.00 34.09 3.13
845 849 5.681543 GTGAAGACATGTCGTTTTCCTTTTC 59.318 40.000 19.85 14.27 37.82 2.29
846 850 5.449999 GGTGAAGACATGTCGTTTTCCTTTT 60.450 40.000 19.85 5.59 37.82 2.27
847 851 4.036380 GGTGAAGACATGTCGTTTTCCTTT 59.964 41.667 19.85 6.32 37.82 3.11
848 852 3.564225 GGTGAAGACATGTCGTTTTCCTT 59.436 43.478 19.85 7.06 37.82 3.36
849 853 3.139077 GGTGAAGACATGTCGTTTTCCT 58.861 45.455 19.85 0.00 37.82 3.36
850 854 2.875933 TGGTGAAGACATGTCGTTTTCC 59.124 45.455 19.85 18.07 37.82 3.13
851 855 3.560068 AGTGGTGAAGACATGTCGTTTTC 59.440 43.478 19.85 17.51 38.82 2.29
852 856 3.541632 AGTGGTGAAGACATGTCGTTTT 58.458 40.909 19.85 9.28 34.09 2.43
853 857 3.194005 AGTGGTGAAGACATGTCGTTT 57.806 42.857 19.85 10.03 34.09 3.60
854 858 2.910688 AGTGGTGAAGACATGTCGTT 57.089 45.000 19.85 14.03 34.09 3.85
855 859 2.891580 ACTAGTGGTGAAGACATGTCGT 59.108 45.455 19.85 17.24 34.09 4.34
856 860 3.577649 ACTAGTGGTGAAGACATGTCG 57.422 47.619 19.85 4.51 34.09 4.35
857 861 7.907214 AATAAACTAGTGGTGAAGACATGTC 57.093 36.000 18.47 18.47 0.00 3.06
858 862 8.594550 AGTAATAAACTAGTGGTGAAGACATGT 58.405 33.333 0.00 0.00 36.36 3.21
861 865 9.305555 AGTAGTAATAAACTAGTGGTGAAGACA 57.694 33.333 0.00 0.00 41.84 3.41
864 868 9.733219 GCTAGTAGTAATAAACTAGTGGTGAAG 57.267 37.037 0.00 0.00 44.61 3.02
865 869 9.246670 TGCTAGTAGTAATAAACTAGTGGTGAA 57.753 33.333 0.00 0.00 44.61 3.18
866 870 8.812513 TGCTAGTAGTAATAAACTAGTGGTGA 57.187 34.615 0.00 0.00 44.61 4.02
869 873 8.979574 GCAATGCTAGTAGTAATAAACTAGTGG 58.020 37.037 0.00 1.87 44.61 4.00
870 874 8.691727 CGCAATGCTAGTAGTAATAAACTAGTG 58.308 37.037 2.94 3.79 44.61 2.74
871 875 7.381678 GCGCAATGCTAGTAGTAATAAACTAGT 59.618 37.037 0.30 0.00 44.61 2.57
872 876 7.148787 GGCGCAATGCTAGTAGTAATAAACTAG 60.149 40.741 10.83 5.36 45.26 2.57
873 877 6.643770 GGCGCAATGCTAGTAGTAATAAACTA 59.356 38.462 10.83 0.00 45.43 2.24
874 878 5.465724 GGCGCAATGCTAGTAGTAATAAACT 59.534 40.000 10.83 0.00 45.43 2.66
875 879 5.235616 TGGCGCAATGCTAGTAGTAATAAAC 59.764 40.000 10.83 0.00 45.43 2.01
876 880 5.361427 TGGCGCAATGCTAGTAGTAATAAA 58.639 37.500 10.83 0.00 45.43 1.40
877 881 4.951254 TGGCGCAATGCTAGTAGTAATAA 58.049 39.130 10.83 0.00 45.43 1.40
878 882 4.594123 TGGCGCAATGCTAGTAGTAATA 57.406 40.909 10.83 0.00 45.43 0.98
879 883 3.469008 TGGCGCAATGCTAGTAGTAAT 57.531 42.857 10.83 0.00 45.43 1.89
883 887 1.656652 AGTTGGCGCAATGCTAGTAG 58.343 50.000 10.83 0.00 45.43 2.57
885 889 1.068333 CAAAGTTGGCGCAATGCTAGT 60.068 47.619 10.83 0.00 45.43 2.57
890 894 1.854664 GTGCAAAGTTGGCGCAATG 59.145 52.632 10.83 0.00 41.27 2.82
895 899 0.030504 TGATGTGTGCAAAGTTGGCG 59.969 50.000 0.00 0.00 0.00 5.69
897 901 4.379813 GGAGTATGATGTGTGCAAAGTTGG 60.380 45.833 0.00 0.00 0.00 3.77
935 939 6.255237 TGTTTATGATTTTCGACCGCGTTATA 59.745 34.615 4.92 0.00 38.98 0.98
938 942 3.186817 TGTTTATGATTTTCGACCGCGTT 59.813 39.130 4.92 0.00 38.98 4.84
1035 1041 2.035961 CAGTCGAGGAAGAGGACAACAA 59.964 50.000 0.00 0.00 33.18 2.83
1176 1182 0.108138 CGGTCCAGGATCCTGTTGAC 60.108 60.000 34.49 31.60 42.15 3.18
1214 1220 4.671590 TCACCAGGAGACGGCGGA 62.672 66.667 13.24 0.00 0.00 5.54
1274 1286 4.681978 GCCCTGAACGCCACGACT 62.682 66.667 0.00 0.00 0.00 4.18
1376 1462 3.642755 GGAGCAACACCGACACAG 58.357 61.111 0.00 0.00 0.00 3.66
1402 1488 2.380084 TTCAGATCCAACCGCACTAC 57.620 50.000 0.00 0.00 0.00 2.73
1477 1564 8.686334 GCAATAACCAAGAAAATCCATAGAGAA 58.314 33.333 0.00 0.00 0.00 2.87
1504 1592 8.813282 CAACCTGTTTCTTTTACACATAAAACC 58.187 33.333 0.00 0.00 35.73 3.27
1529 1619 3.472652 ACAACAGCCGATACAAAAGACA 58.527 40.909 0.00 0.00 0.00 3.41
1532 1622 4.481930 TGAACAACAGCCGATACAAAAG 57.518 40.909 0.00 0.00 0.00 2.27
1541 1631 1.452110 TGATCCATGAACAACAGCCG 58.548 50.000 0.00 0.00 0.00 5.52
1630 1720 6.589523 TGCATATTTGTTCAACCAATACAAGC 59.410 34.615 0.00 3.27 33.74 4.01
1668 1761 9.825109 CTGGTTTAACCTCCTTTTCAAAAATAA 57.175 29.630 15.68 0.00 39.58 1.40
1669 1762 7.929245 GCTGGTTTAACCTCCTTTTCAAAAATA 59.071 33.333 15.68 0.00 39.58 1.40
1670 1763 6.765989 GCTGGTTTAACCTCCTTTTCAAAAAT 59.234 34.615 15.68 0.00 39.58 1.82
1671 1764 6.110033 GCTGGTTTAACCTCCTTTTCAAAAA 58.890 36.000 15.68 0.00 39.58 1.94
1672 1765 5.666462 GCTGGTTTAACCTCCTTTTCAAAA 58.334 37.500 15.68 0.00 39.58 2.44
1673 1766 4.202070 CGCTGGTTTAACCTCCTTTTCAAA 60.202 41.667 15.68 0.00 39.58 2.69
1674 1767 3.316868 CGCTGGTTTAACCTCCTTTTCAA 59.683 43.478 15.68 0.00 39.58 2.69
1675 1768 2.882137 CGCTGGTTTAACCTCCTTTTCA 59.118 45.455 15.68 0.00 39.58 2.69
1676 1769 2.228103 CCGCTGGTTTAACCTCCTTTTC 59.772 50.000 15.68 0.00 39.58 2.29
1677 1770 2.235891 CCGCTGGTTTAACCTCCTTTT 58.764 47.619 15.68 0.00 39.58 2.27
1678 1771 1.905637 CCGCTGGTTTAACCTCCTTT 58.094 50.000 15.68 0.00 39.58 3.11
1679 1772 0.608308 GCCGCTGGTTTAACCTCCTT 60.608 55.000 15.68 0.00 39.58 3.36
1680 1773 1.002502 GCCGCTGGTTTAACCTCCT 60.003 57.895 15.68 0.00 39.58 3.69
1681 1774 2.044555 GGCCGCTGGTTTAACCTCC 61.045 63.158 15.68 5.24 39.58 4.30
1682 1775 1.002502 AGGCCGCTGGTTTAACCTC 60.003 57.895 15.68 6.32 39.58 3.85
1683 1776 1.002502 GAGGCCGCTGGTTTAACCT 60.003 57.895 15.68 0.00 39.58 3.50
1684 1777 1.002502 AGAGGCCGCTGGTTTAACC 60.003 57.895 8.76 7.27 39.22 2.85
1685 1778 0.605589 ACAGAGGCCGCTGGTTTAAC 60.606 55.000 35.51 2.52 40.20 2.01
1686 1779 0.978151 TACAGAGGCCGCTGGTTTAA 59.022 50.000 35.51 15.65 40.20 1.52
1687 1780 1.200519 ATACAGAGGCCGCTGGTTTA 58.799 50.000 35.51 21.64 40.20 2.01
1688 1781 0.328258 AATACAGAGGCCGCTGGTTT 59.672 50.000 35.51 25.58 40.20 3.27
1689 1782 1.200519 TAATACAGAGGCCGCTGGTT 58.799 50.000 35.51 29.44 40.20 3.67
1690 1783 1.200519 TTAATACAGAGGCCGCTGGT 58.799 50.000 35.51 24.02 40.20 4.00
1691 1784 2.417719 GATTAATACAGAGGCCGCTGG 58.582 52.381 35.51 20.06 40.20 4.85
1692 1785 2.061773 CGATTAATACAGAGGCCGCTG 58.938 52.381 32.13 32.13 41.63 5.18
1693 1786 1.961394 TCGATTAATACAGAGGCCGCT 59.039 47.619 1.77 1.77 0.00 5.52
1694 1787 2.433868 TCGATTAATACAGAGGCCGC 57.566 50.000 0.00 0.00 0.00 6.53
1695 1788 2.668457 GCATCGATTAATACAGAGGCCG 59.332 50.000 11.32 0.00 34.79 6.13
1696 1789 3.664107 TGCATCGATTAATACAGAGGCC 58.336 45.455 16.60 0.00 39.33 5.19
1697 1790 4.436584 GCATGCATCGATTAATACAGAGGC 60.437 45.833 14.21 14.03 40.32 4.70
1698 1791 4.692155 TGCATGCATCGATTAATACAGAGG 59.308 41.667 18.46 0.00 0.00 3.69
1699 1792 5.670588 GCTGCATGCATCGATTAATACAGAG 60.671 44.000 22.97 4.39 42.31 3.35
1700 1793 4.152938 GCTGCATGCATCGATTAATACAGA 59.847 41.667 22.97 0.00 42.31 3.41
1701 1794 4.400845 GCTGCATGCATCGATTAATACAG 58.599 43.478 22.97 5.57 42.31 2.74
1702 1795 3.189080 GGCTGCATGCATCGATTAATACA 59.811 43.478 22.97 0.00 45.15 2.29
1703 1796 3.189080 TGGCTGCATGCATCGATTAATAC 59.811 43.478 22.97 1.99 45.15 1.89
1704 1797 3.410508 TGGCTGCATGCATCGATTAATA 58.589 40.909 22.97 0.00 45.15 0.98
1705 1798 2.232399 TGGCTGCATGCATCGATTAAT 58.768 42.857 22.97 0.00 45.15 1.40
1706 1799 1.677942 TGGCTGCATGCATCGATTAA 58.322 45.000 22.97 0.00 45.15 1.40
1707 1800 1.808343 GATGGCTGCATGCATCGATTA 59.192 47.619 22.97 4.92 45.15 1.75
1708 1801 0.596577 GATGGCTGCATGCATCGATT 59.403 50.000 22.97 5.00 45.15 3.34
1709 1802 0.250770 AGATGGCTGCATGCATCGAT 60.251 50.000 22.97 19.82 45.15 3.59
1710 1803 0.464916 AAGATGGCTGCATGCATCGA 60.465 50.000 22.97 15.35 45.15 3.59
1711 1804 0.384309 AAAGATGGCTGCATGCATCG 59.616 50.000 22.97 12.00 45.15 3.84
1712 1805 3.936372 ATAAAGATGGCTGCATGCATC 57.064 42.857 22.97 17.75 45.15 3.91
1713 1806 5.794726 TTAATAAAGATGGCTGCATGCAT 57.205 34.783 22.97 5.92 45.15 3.96
1714 1807 5.794726 ATTAATAAAGATGGCTGCATGCA 57.205 34.783 21.29 21.29 45.15 3.96
1715 1808 7.373493 AGTAATTAATAAAGATGGCTGCATGC 58.627 34.615 11.82 11.82 41.94 4.06
1716 1809 9.403110 GAAGTAATTAATAAAGATGGCTGCATG 57.597 33.333 0.50 0.00 0.00 4.06
1717 1810 8.579863 GGAAGTAATTAATAAAGATGGCTGCAT 58.420 33.333 0.50 0.00 0.00 3.96
1718 1811 7.779798 AGGAAGTAATTAATAAAGATGGCTGCA 59.220 33.333 0.50 0.00 0.00 4.41
1719 1812 8.171164 AGGAAGTAATTAATAAAGATGGCTGC 57.829 34.615 0.00 0.00 0.00 5.25
1720 1813 8.787852 GGAGGAAGTAATTAATAAAGATGGCTG 58.212 37.037 0.00 0.00 0.00 4.85
1721 1814 7.661847 CGGAGGAAGTAATTAATAAAGATGGCT 59.338 37.037 0.00 0.00 0.00 4.75
1722 1815 7.444487 ACGGAGGAAGTAATTAATAAAGATGGC 59.556 37.037 0.00 0.00 0.00 4.40
1723 1816 8.904099 ACGGAGGAAGTAATTAATAAAGATGG 57.096 34.615 0.00 0.00 0.00 3.51
1726 1819 9.729281 ACAAACGGAGGAAGTAATTAATAAAGA 57.271 29.630 0.00 0.00 0.00 2.52
1736 1829 9.558396 TCTAATAAAAACAAACGGAGGAAGTAA 57.442 29.630 0.00 0.00 0.00 2.24
1737 1830 8.992073 GTCTAATAAAAACAAACGGAGGAAGTA 58.008 33.333 0.00 0.00 0.00 2.24
1738 1831 7.307573 CGTCTAATAAAAACAAACGGAGGAAGT 60.308 37.037 0.00 0.00 0.00 3.01
1739 1832 7.013529 CGTCTAATAAAAACAAACGGAGGAAG 58.986 38.462 0.00 0.00 0.00 3.46
1740 1833 6.482973 ACGTCTAATAAAAACAAACGGAGGAA 59.517 34.615 0.00 0.00 33.26 3.36
1741 1834 5.990996 ACGTCTAATAAAAACAAACGGAGGA 59.009 36.000 0.00 0.00 33.26 3.71
1742 1835 6.232139 ACGTCTAATAAAAACAAACGGAGG 57.768 37.500 0.00 0.00 33.26 4.30
1743 1836 7.346695 TGAACGTCTAATAAAAACAAACGGAG 58.653 34.615 0.00 0.00 33.26 4.63
1744 1837 7.224362 TCTGAACGTCTAATAAAAACAAACGGA 59.776 33.333 0.00 0.00 33.26 4.69
1745 1838 7.319615 GTCTGAACGTCTAATAAAAACAAACGG 59.680 37.037 0.00 0.00 33.26 4.44
1746 1839 7.847078 TGTCTGAACGTCTAATAAAAACAAACG 59.153 33.333 0.00 0.00 35.00 3.60
1747 1840 9.493206 TTGTCTGAACGTCTAATAAAAACAAAC 57.507 29.630 0.00 0.00 0.00 2.93
1748 1841 9.493206 GTTGTCTGAACGTCTAATAAAAACAAA 57.507 29.630 0.00 0.00 0.00 2.83
1749 1842 8.885722 AGTTGTCTGAACGTCTAATAAAAACAA 58.114 29.630 0.00 0.00 0.00 2.83
1750 1843 8.428186 AGTTGTCTGAACGTCTAATAAAAACA 57.572 30.769 0.00 0.00 0.00 2.83
1751 1844 9.155053 CAAGTTGTCTGAACGTCTAATAAAAAC 57.845 33.333 0.00 0.00 0.00 2.43
1752 1845 8.885722 ACAAGTTGTCTGAACGTCTAATAAAAA 58.114 29.630 1.64 0.00 0.00 1.94
1753 1846 8.428186 ACAAGTTGTCTGAACGTCTAATAAAA 57.572 30.769 1.64 0.00 0.00 1.52
1754 1847 8.428186 AACAAGTTGTCTGAACGTCTAATAAA 57.572 30.769 9.40 0.00 0.00 1.40
1755 1848 8.428186 AAACAAGTTGTCTGAACGTCTAATAA 57.572 30.769 9.40 0.00 0.00 1.40
1756 1849 8.332464 CAAAACAAGTTGTCTGAACGTCTAATA 58.668 33.333 9.40 0.00 0.00 0.98
1757 1850 6.920569 AAACAAGTTGTCTGAACGTCTAAT 57.079 33.333 9.40 0.00 0.00 1.73
1758 1851 6.148150 ACAAAACAAGTTGTCTGAACGTCTAA 59.852 34.615 19.62 0.00 37.10 2.10
1759 1852 5.640357 ACAAAACAAGTTGTCTGAACGTCTA 59.360 36.000 19.62 0.00 37.10 2.59
1760 1853 4.454504 ACAAAACAAGTTGTCTGAACGTCT 59.545 37.500 19.62 0.00 37.10 4.18
1761 1854 4.553429 CACAAAACAAGTTGTCTGAACGTC 59.447 41.667 19.62 0.00 39.73 4.34
1762 1855 4.472286 CACAAAACAAGTTGTCTGAACGT 58.528 39.130 19.62 6.41 39.73 3.99
1763 1856 3.300590 GCACAAAACAAGTTGTCTGAACG 59.699 43.478 19.62 11.18 39.73 3.95
1764 1857 4.324402 CAGCACAAAACAAGTTGTCTGAAC 59.676 41.667 19.62 12.68 39.73 3.18
1765 1858 4.022416 ACAGCACAAAACAAGTTGTCTGAA 60.022 37.500 20.77 0.00 39.73 3.02
1766 1859 3.505680 ACAGCACAAAACAAGTTGTCTGA 59.494 39.130 20.77 0.00 39.73 3.27
1767 1860 3.836949 ACAGCACAAAACAAGTTGTCTG 58.163 40.909 9.40 12.94 39.73 3.51
1768 1861 4.519540 AACAGCACAAAACAAGTTGTCT 57.480 36.364 9.40 0.00 39.73 3.41
1769 1862 5.590104 AAAACAGCACAAAACAAGTTGTC 57.410 34.783 9.40 0.00 39.73 3.18
1770 1863 5.525378 TCAAAAACAGCACAAAACAAGTTGT 59.475 32.000 1.64 1.64 42.48 3.32
1771 1864 5.983475 TCAAAAACAGCACAAAACAAGTTG 58.017 33.333 0.00 0.00 34.52 3.16
1772 1865 6.037610 TGTTCAAAAACAGCACAAAACAAGTT 59.962 30.769 0.00 0.00 40.45 2.66
1773 1866 5.525378 TGTTCAAAAACAGCACAAAACAAGT 59.475 32.000 0.00 0.00 40.45 3.16
1774 1867 5.983475 TGTTCAAAAACAGCACAAAACAAG 58.017 33.333 0.00 0.00 40.45 3.16
1775 1868 5.991328 TGTTCAAAAACAGCACAAAACAA 57.009 30.435 0.00 0.00 40.45 2.83
1786 1879 6.206634 AGACTTTCAGACACTGTTCAAAAACA 59.793 34.615 0.00 0.00 43.06 2.83
1787 1880 6.612306 AGACTTTCAGACACTGTTCAAAAAC 58.388 36.000 0.00 0.00 35.85 2.43
1788 1881 6.817765 AGACTTTCAGACACTGTTCAAAAA 57.182 33.333 0.00 0.00 32.61 1.94
1789 1882 7.915293 TTAGACTTTCAGACACTGTTCAAAA 57.085 32.000 0.00 0.00 32.61 2.44
1790 1883 7.915293 TTTAGACTTTCAGACACTGTTCAAA 57.085 32.000 0.00 0.00 32.61 2.69
1791 1884 7.915293 TTTTAGACTTTCAGACACTGTTCAA 57.085 32.000 0.00 0.00 32.61 2.69
1792 1885 7.552687 ACATTTTAGACTTTCAGACACTGTTCA 59.447 33.333 0.00 0.00 32.61 3.18
1793 1886 7.920738 ACATTTTAGACTTTCAGACACTGTTC 58.079 34.615 0.00 0.00 32.61 3.18
1794 1887 7.770897 AGACATTTTAGACTTTCAGACACTGTT 59.229 33.333 0.00 0.00 32.61 3.16
1795 1888 7.275920 AGACATTTTAGACTTTCAGACACTGT 58.724 34.615 0.00 0.00 32.61 3.55
1796 1889 7.721286 AGACATTTTAGACTTTCAGACACTG 57.279 36.000 0.00 0.00 0.00 3.66
1828 1921 9.449719 CCTTTGTGAAATACTACCTCTGTTTAT 57.550 33.333 0.00 0.00 0.00 1.40
1829 1922 8.434392 ACCTTTGTGAAATACTACCTCTGTTTA 58.566 33.333 0.00 0.00 0.00 2.01
1830 1923 7.287810 ACCTTTGTGAAATACTACCTCTGTTT 58.712 34.615 0.00 0.00 0.00 2.83
1831 1924 6.838382 ACCTTTGTGAAATACTACCTCTGTT 58.162 36.000 0.00 0.00 0.00 3.16
1832 1925 6.270231 AGACCTTTGTGAAATACTACCTCTGT 59.730 38.462 0.00 0.00 0.00 3.41
1833 1926 6.702329 AGACCTTTGTGAAATACTACCTCTG 58.298 40.000 0.00 0.00 0.00 3.35
1834 1927 6.936968 AGACCTTTGTGAAATACTACCTCT 57.063 37.500 0.00 0.00 0.00 3.69
1835 1928 8.092687 TGTTAGACCTTTGTGAAATACTACCTC 58.907 37.037 0.00 0.00 0.00 3.85
1836 1929 7.970102 TGTTAGACCTTTGTGAAATACTACCT 58.030 34.615 0.00 0.00 0.00 3.08
1837 1930 8.611654 TTGTTAGACCTTTGTGAAATACTACC 57.388 34.615 0.00 0.00 0.00 3.18
1838 1931 9.485206 TCTTGTTAGACCTTTGTGAAATACTAC 57.515 33.333 0.00 0.00 0.00 2.73
1840 1933 8.837389 GTTCTTGTTAGACCTTTGTGAAATACT 58.163 33.333 0.00 0.00 0.00 2.12
1841 1934 8.617809 TGTTCTTGTTAGACCTTTGTGAAATAC 58.382 33.333 0.00 0.00 0.00 1.89
1924 2030 5.163343 CGGTTTTAGATATGGGGAGTGAGAA 60.163 44.000 0.00 0.00 0.00 2.87
1957 2063 1.347707 ACGTTGTGTGGATGGATCAGT 59.652 47.619 0.00 0.00 0.00 3.41
1972 2078 3.611113 CGGTTGTTAGTCCTGATACGTTG 59.389 47.826 0.00 0.00 0.00 4.10
2001 2107 1.337447 GCGGTGTGTGCTTTAGGTCTA 60.337 52.381 0.00 0.00 0.00 2.59
2020 2126 5.421203 GCGACTTCTAAAACGTATGTATGC 58.579 41.667 0.00 0.00 0.00 3.14
2027 2133 4.445452 AGATGGCGACTTCTAAAACGTA 57.555 40.909 4.55 0.00 42.54 3.57
2040 2146 1.137675 CTGGTCTGATGAAGATGGCGA 59.862 52.381 0.00 0.00 37.23 5.54
2073 2180 2.094597 GGATGATGCAGATCTCTCTCCG 60.095 54.545 0.00 0.00 0.00 4.63
2108 2216 1.440060 GTGGTGGCATCGACGGATA 59.560 57.895 0.00 0.00 0.00 2.59
2174 2283 2.192624 GCACGAGAGATCTTTCAGAGC 58.807 52.381 13.26 11.31 0.00 4.09
2209 2318 1.676916 GCTATGCTGAGTTGTGCCTGA 60.677 52.381 0.00 0.00 0.00 3.86
2216 2325 2.030091 CGACATGTGCTATGCTGAGTTG 59.970 50.000 1.15 0.00 0.00 3.16
2217 2326 2.274437 CGACATGTGCTATGCTGAGTT 58.726 47.619 1.15 0.00 0.00 3.01
2275 2403 0.324738 TCGGAAGACAGAGGCAGGAT 60.325 55.000 0.00 0.00 33.31 3.24
2293 2421 0.865769 ATCGTTTGTGGAGCAACGTC 59.134 50.000 4.90 0.00 36.72 4.34
2294 2422 0.586319 CATCGTTTGTGGAGCAACGT 59.414 50.000 4.90 0.00 36.72 3.99
2297 2425 0.874390 GAGCATCGTTTGTGGAGCAA 59.126 50.000 0.00 0.00 34.87 3.91
2345 2473 2.690497 GGTCTTCCAGATCAGACGATGA 59.310 50.000 0.00 0.00 40.45 2.92
2389 2521 2.034687 GCTGGTGATGGGCACTGT 59.965 61.111 0.00 0.00 46.86 3.55
2417 2549 1.760480 GGTGGGCACTGTTTGGGTT 60.760 57.895 0.00 0.00 0.00 4.11
2423 2555 2.123897 GTGGTGGTGGGCACTGTT 60.124 61.111 0.00 0.00 0.00 3.16
2461 2593 0.460987 GATGCCGTGACCTTCCTGAG 60.461 60.000 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.