Multiple sequence alignment - TraesCS3A01G222800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G222800 chr3A 100.000 4008 0 0 1 4008 416313338 416309331 0.000000e+00 7402.0
1 TraesCS3A01G222800 chr3A 100.000 3551 0 0 4338 7888 416309001 416305451 0.000000e+00 6558.0
2 TraesCS3A01G222800 chr3A 98.718 312 3 1 2948 3259 51751575 51751885 3.220000e-153 553.0
3 TraesCS3A01G222800 chr3A 89.286 112 9 3 2027 2138 679924278 679924170 3.840000e-28 137.0
4 TraesCS3A01G222800 chr3B 93.787 2543 91 30 411 2950 405780059 405782537 0.000000e+00 3759.0
5 TraesCS3A01G222800 chr3B 96.312 1437 45 3 5496 6930 405782800 405784230 0.000000e+00 2353.0
6 TraesCS3A01G222800 chr3B 99.026 308 3 0 2950 3257 11551819 11552126 3.220000e-153 553.0
7 TraesCS3A01G222800 chr3B 88.303 436 40 5 1 429 405779615 405780046 5.460000e-141 512.0
8 TraesCS3A01G222800 chr3B 95.745 282 11 1 3257 3538 405782535 405782815 3.360000e-123 453.0
9 TraesCS3A01G222800 chr3B 92.437 238 7 3 6932 7169 405785896 405786122 5.900000e-86 329.0
10 TraesCS3A01G222800 chr3B 88.050 159 13 5 5341 5496 125894082 125894237 4.860000e-42 183.0
11 TraesCS3A01G222800 chr3B 87.421 159 14 5 5341 5496 125876390 125876545 2.260000e-40 178.0
12 TraesCS3A01G222800 chr3B 86.111 144 14 5 6191 6330 112281071 112280930 4.930000e-32 150.0
13 TraesCS3A01G222800 chr3D 97.282 1435 36 2 5496 6928 313817632 313816199 0.000000e+00 2431.0
14 TraesCS3A01G222800 chr3D 97.577 784 18 1 2167 2950 313818677 313817895 0.000000e+00 1341.0
15 TraesCS3A01G222800 chr3D 94.464 849 28 6 413 1253 313820737 313819900 0.000000e+00 1290.0
16 TraesCS3A01G222800 chr3D 88.320 488 45 10 7277 7757 313812928 313812446 6.860000e-160 575.0
17 TraesCS3A01G222800 chr3D 89.976 419 33 7 7345 7757 313807979 313807564 4.190000e-147 532.0
18 TraesCS3A01G222800 chr3D 89.976 419 33 7 7345 7757 313809468 313809053 4.190000e-147 532.0
19 TraesCS3A01G222800 chr3D 89.737 419 34 7 7345 7757 313797052 313796637 1.950000e-145 527.0
20 TraesCS3A01G222800 chr3D 89.260 419 36 7 7345 7757 313795081 313794666 4.220000e-142 516.0
21 TraesCS3A01G222800 chr3D 89.260 419 36 7 7345 7757 313805495 313805080 4.220000e-142 516.0
22 TraesCS3A01G222800 chr3D 89.260 419 35 8 7345 7757 313806980 313806566 4.220000e-142 516.0
23 TraesCS3A01G222800 chr3D 89.260 419 35 8 7345 7757 313808970 313808556 4.220000e-142 516.0
24 TraesCS3A01G222800 chr3D 89.260 419 35 8 7345 7757 313810957 313810543 4.220000e-142 516.0
25 TraesCS3A01G222800 chr3D 94.326 282 15 1 3257 3538 313817897 313817617 1.570000e-116 431.0
26 TraesCS3A01G222800 chr3D 89.015 264 9 4 6928 7191 313813201 313812958 7.690000e-80 309.0
27 TraesCS3A01G222800 chr3D 86.220 254 27 7 1 250 313821526 313821277 1.300000e-67 268.0
28 TraesCS3A01G222800 chr3D 89.005 191 15 4 243 429 313820967 313820779 1.710000e-56 231.0
29 TraesCS3A01G222800 chr3D 87.261 157 14 5 5341 5494 253667285 253667438 2.930000e-39 174.0
30 TraesCS3A01G222800 chr3D 93.407 91 2 1 1281 1371 313819901 313819815 1.790000e-26 132.0
31 TraesCS3A01G222800 chr3D 100.000 35 0 0 7217 7251 313812958 313812924 1.840000e-06 65.8
32 TraesCS3A01G222800 chr5A 97.596 1123 23 4 4338 5458 589247508 589248628 0.000000e+00 1921.0
33 TraesCS3A01G222800 chr5A 90.822 523 9 12 3497 4002 589246906 589247406 0.000000e+00 664.0
34 TraesCS3A01G222800 chr5A 92.969 128 7 1 2013 2138 494231046 494231173 1.350000e-42 185.0
35 TraesCS3A01G222800 chr5A 97.727 44 1 0 428 471 702603346 702603303 8.490000e-10 76.8
36 TraesCS3A01G222800 chr2B 95.521 1161 50 2 4338 5496 695682798 695683958 0.000000e+00 1855.0
37 TraesCS3A01G222800 chr2B 92.111 469 29 3 3542 4002 695682227 695682695 0.000000e+00 654.0
38 TraesCS3A01G222800 chr2B 98.107 317 5 1 2950 3266 590002687 590002372 1.160000e-152 551.0
39 TraesCS3A01G222800 chr2B 87.500 112 11 3 2026 2136 232785037 232785146 8.310000e-25 126.0
40 TraesCS3A01G222800 chr2B 96.721 61 2 0 2074 2134 750332509 750332569 1.400000e-17 102.0
41 TraesCS3A01G222800 chr5D 95.755 1013 33 6 4344 5346 379267451 379268463 0.000000e+00 1624.0
42 TraesCS3A01G222800 chr5D 84.439 1176 154 20 4338 5503 506077952 506079108 0.000000e+00 1131.0
43 TraesCS3A01G222800 chr5D 93.617 470 20 6 3542 4002 379266872 379267340 0.000000e+00 693.0
44 TraesCS3A01G222800 chr5D 96.795 156 4 1 5341 5496 379268419 379268573 7.850000e-65 259.0
45 TraesCS3A01G222800 chr5D 82.927 123 11 7 3542 3660 272363109 272362993 1.400000e-17 102.0
46 TraesCS3A01G222800 chr1D 96.750 923 27 3 4338 5257 12407423 12408345 0.000000e+00 1535.0
47 TraesCS3A01G222800 chr1D 87.212 391 18 17 3603 3984 442046735 442047102 4.400000e-112 416.0
48 TraesCS3A01G222800 chr1D 97.059 238 7 0 5259 5496 12410257 12410494 1.230000e-107 401.0
49 TraesCS3A01G222800 chr1D 92.562 242 18 0 3761 4002 12407079 12407320 1.630000e-91 348.0
50 TraesCS3A01G222800 chr1D 91.262 206 7 5 3542 3740 12398617 12398818 3.630000e-68 270.0
51 TraesCS3A01G222800 chr1D 91.200 125 9 1 2016 2138 324746968 324747092 1.360000e-37 169.0
52 TraesCS3A01G222800 chr1D 93.258 89 6 0 6093 6181 484391666 484391578 1.790000e-26 132.0
53 TraesCS3A01G222800 chr4D 84.444 1170 149 22 4338 5496 29180684 29181831 0.000000e+00 1122.0
54 TraesCS3A01G222800 chr4D 87.943 141 8 6 6191 6325 53759994 53760131 2.950000e-34 158.0
55 TraesCS3A01G222800 chr2A 84.202 1171 152 24 4338 5496 133468082 133466933 0.000000e+00 1107.0
56 TraesCS3A01G222800 chr2A 97.231 325 5 4 2935 3257 68129010 68129332 1.500000e-151 547.0
57 TraesCS3A01G222800 chr6D 84.072 1174 158 20 4338 5501 237825498 237826652 0.000000e+00 1105.0
58 TraesCS3A01G222800 chr6D 92.240 683 49 3 2154 2833 438308710 438308029 0.000000e+00 965.0
59 TraesCS3A01G222800 chr6D 88.955 335 26 4 5576 5899 438305479 438305145 3.430000e-108 403.0
60 TraesCS3A01G222800 chr6D 81.856 485 54 16 6436 6913 438304565 438304108 2.080000e-100 377.0
61 TraesCS3A01G222800 chr6D 90.909 264 22 2 5930 6193 438305145 438304884 3.500000e-93 353.0
62 TraesCS3A01G222800 chr6D 76.599 594 85 30 596 1151 438310436 438309859 2.170000e-70 278.0
63 TraesCS3A01G222800 chr6D 86.667 225 20 9 1795 2016 438308951 438308734 2.840000e-59 241.0
64 TraesCS3A01G222800 chr6D 86.466 133 14 4 6200 6331 153810664 153810793 8.250000e-30 143.0
65 TraesCS3A01G222800 chr1A 84.034 1165 154 23 4338 5491 372548390 372549533 0.000000e+00 1092.0
66 TraesCS3A01G222800 chr1A 98.107 317 5 1 2947 3263 261368705 261368390 1.160000e-152 551.0
67 TraesCS3A01G222800 chr6A 92.805 681 48 1 2154 2834 586837644 586836965 0.000000e+00 985.0
68 TraesCS3A01G222800 chr6A 88.905 703 60 8 5497 6183 586836634 586835934 0.000000e+00 850.0
69 TraesCS3A01G222800 chr6A 98.101 316 5 1 2950 3265 359051268 359050954 4.160000e-152 549.0
70 TraesCS3A01G222800 chr6A 83.865 533 48 14 1503 2016 586838181 586837668 2.580000e-129 473.0
71 TraesCS3A01G222800 chr6A 82.093 430 56 12 6436 6858 586833860 586833445 1.630000e-91 348.0
72 TraesCS3A01G222800 chr6B 90.539 687 54 7 2154 2834 663709882 663709201 0.000000e+00 898.0
73 TraesCS3A01G222800 chr6B 84.924 524 49 14 1503 2016 663710409 663709906 3.290000e-138 503.0
74 TraesCS3A01G222800 chr6B 84.286 490 58 11 6436 6919 663697735 663697259 2.010000e-125 460.0
75 TraesCS3A01G222800 chr6B 91.803 183 15 0 5628 5810 663706416 663706234 1.020000e-63 255.0
76 TraesCS3A01G222800 chr6B 92.941 85 6 0 5799 5883 663698166 663698082 2.990000e-24 124.0
77 TraesCS3A01G222800 chr6B 83.065 124 9 9 3542 3660 669337780 669337664 1.400000e-17 102.0
78 TraesCS3A01G222800 chr7A 99.351 308 1 1 2950 3257 671404912 671404606 2.490000e-154 556.0
79 TraesCS3A01G222800 chr7A 91.339 127 8 2 2013 2136 400068824 400068950 3.780000e-38 171.0
80 TraesCS3A01G222800 chr7B 98.107 317 4 2 2944 3259 462883220 462882905 1.160000e-152 551.0
81 TraesCS3A01G222800 chr7B 81.075 465 40 18 3542 4002 657321097 657321517 2.120000e-85 327.0
82 TraesCS3A01G222800 chr7B 88.889 72 6 2 1095 1166 511463109 511463040 3.920000e-13 87.9
83 TraesCS3A01G222800 chr4B 98.397 312 4 1 2948 3259 385922981 385922671 1.500000e-151 547.0
84 TraesCS3A01G222800 chr4B 82.927 123 11 9 3542 3660 414192402 414192518 1.400000e-17 102.0
85 TraesCS3A01G222800 chr4B 100.000 30 0 0 440 469 182257326 182257355 1.000000e-03 56.5
86 TraesCS3A01G222800 chr2D 93.023 129 6 2 2013 2138 87754317 87754189 1.350000e-42 185.0
87 TraesCS3A01G222800 chr2D 89.147 129 6 4 6190 6310 133769558 133769430 3.810000e-33 154.0
88 TraesCS3A01G222800 chr4A 91.339 127 9 2 2013 2138 617850698 617850573 1.050000e-38 172.0
89 TraesCS3A01G222800 chr4A 88.732 142 12 3 5357 5496 743571775 743571636 3.780000e-38 171.0
90 TraesCS3A01G222800 chr4A 88.652 141 7 6 6191 6325 543368437 543368300 6.330000e-36 163.0
91 TraesCS3A01G222800 chr4A 86.486 148 8 11 6191 6330 84537500 84537357 1.370000e-32 152.0
92 TraesCS3A01G222800 chr4A 88.000 125 6 9 3542 3660 67297025 67296904 1.070000e-28 139.0
93 TraesCS3A01G222800 chr5B 85.535 159 17 5 5341 5496 527601990 527601835 2.280000e-35 161.0
94 TraesCS3A01G222800 chr5B 85.714 140 10 6 6200 6330 290386636 290386498 1.070000e-28 139.0
95 TraesCS3A01G222800 chr5B 95.122 41 2 0 428 468 35573643 35573603 1.840000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G222800 chr3A 416305451 416313338 7887 True 6980.000000 7402 100.000000 1 7888 2 chr3A.!!$R2 7887
1 TraesCS3A01G222800 chr3B 405779615 405786122 6507 False 1481.200000 3759 93.316800 1 7169 5 chr3B.!!$F4 7168
2 TraesCS3A01G222800 chr3D 313805080 313821526 16446 True 637.612500 2431 91.663000 1 7757 16 chr3D.!!$R2 7756
3 TraesCS3A01G222800 chr3D 313794666 313797052 2386 True 521.500000 527 89.498500 7345 7757 2 chr3D.!!$R1 412
4 TraesCS3A01G222800 chr5A 589246906 589248628 1722 False 1292.500000 1921 94.209000 3497 5458 2 chr5A.!!$F2 1961
5 TraesCS3A01G222800 chr2B 695682227 695683958 1731 False 1254.500000 1855 93.816000 3542 5496 2 chr2B.!!$F3 1954
6 TraesCS3A01G222800 chr5D 506077952 506079108 1156 False 1131.000000 1131 84.439000 4338 5503 1 chr5D.!!$F1 1165
7 TraesCS3A01G222800 chr5D 379266872 379268573 1701 False 858.666667 1624 95.389000 3542 5496 3 chr5D.!!$F2 1954
8 TraesCS3A01G222800 chr1D 12407079 12410494 3415 False 761.333333 1535 95.457000 3761 5496 3 chr1D.!!$F4 1735
9 TraesCS3A01G222800 chr4D 29180684 29181831 1147 False 1122.000000 1122 84.444000 4338 5496 1 chr4D.!!$F1 1158
10 TraesCS3A01G222800 chr2A 133466933 133468082 1149 True 1107.000000 1107 84.202000 4338 5496 1 chr2A.!!$R1 1158
11 TraesCS3A01G222800 chr6D 237825498 237826652 1154 False 1105.000000 1105 84.072000 4338 5501 1 chr6D.!!$F2 1163
12 TraesCS3A01G222800 chr6D 438304108 438310436 6328 True 436.166667 965 86.204333 596 6913 6 chr6D.!!$R1 6317
13 TraesCS3A01G222800 chr1A 372548390 372549533 1143 False 1092.000000 1092 84.034000 4338 5491 1 chr1A.!!$F1 1153
14 TraesCS3A01G222800 chr6A 586833445 586838181 4736 True 664.000000 985 86.917000 1503 6858 4 chr6A.!!$R2 5355
15 TraesCS3A01G222800 chr6B 663706234 663710409 4175 True 552.000000 898 89.088667 1503 5810 3 chr6B.!!$R3 4307
16 TraesCS3A01G222800 chr6B 663697259 663698166 907 True 292.000000 460 88.613500 5799 6919 2 chr6B.!!$R2 1120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 1388 0.034616 CGAAGCCTCATCCTCCATCC 59.965 60.000 0.0 0.0 0.00 3.51 F
2040 2824 0.476338 TGCTACCCTTTGGCTGTTGA 59.524 50.000 0.0 0.0 33.59 3.18 F
2968 3943 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.0 0.0 46.91 3.86 F
3308 4283 1.368641 TCATGTCAGTAATGCACGCC 58.631 50.000 0.0 0.0 0.00 5.68 F
3576 4564 2.189784 GGAGAAACCCTAGCCGCC 59.810 66.667 0.0 0.0 0.00 6.13 F
5293 8221 3.585289 TGATGGGTGCTAAGTTCTTGGTA 59.415 43.478 0.0 0.0 0.00 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2668 3637 1.538512 CTGTTGATGCAGTTGACCCAG 59.461 52.381 0.00 0.00 0.00 4.45 R
3235 4210 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94 R
4930 5941 2.044555 CAGCGACCACCGAGACCTA 61.045 63.158 0.00 0.00 41.76 3.08 R
5149 6160 2.260844 TTCACTCAGCACCTTGAAGG 57.739 50.000 10.24 10.24 42.49 3.46 R
5525 10589 4.659115 ACCCCGAAATTTAAGCAACTACT 58.341 39.130 0.00 0.00 0.00 2.57 R
7058 20278 0.104144 TCCTCCTCAACCCCCTTCAA 60.104 55.000 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 6.252281 TCGCTGTAAATAAACAATAAAGCCG 58.748 36.000 0.00 0.00 0.00 5.52
56 57 5.454232 CGCTGTAAATAAACAATAAAGCCGG 59.546 40.000 0.00 0.00 0.00 6.13
81 82 4.974275 GGCGACTTAGAAGGAAAAACAAAC 59.026 41.667 0.00 0.00 0.00 2.93
82 83 5.220989 GGCGACTTAGAAGGAAAAACAAACT 60.221 40.000 0.00 0.00 0.00 2.66
83 84 5.681543 GCGACTTAGAAGGAAAAACAAACTG 59.318 40.000 0.00 0.00 0.00 3.16
113 114 4.059304 TACCGGTGGCGTAGGGGA 62.059 66.667 19.93 0.00 0.00 4.81
146 148 4.993705 AACTTCAGGGGTAAATCTGACA 57.006 40.909 0.00 0.00 39.43 3.58
149 151 4.104102 ACTTCAGGGGTAAATCTGACAACA 59.896 41.667 0.00 0.00 39.43 3.33
183 185 5.551233 AGCAATAGCCGCTTTATTATCAGA 58.449 37.500 0.00 0.00 43.56 3.27
186 188 7.824289 AGCAATAGCCGCTTTATTATCAGATAA 59.176 33.333 5.29 5.29 43.56 1.75
193 195 9.899226 GCCGCTTTATTATCAGATAAAGATTTT 57.101 29.630 17.12 0.00 45.79 1.82
355 682 2.280524 CGAACCGGTGAACTGGCA 60.281 61.111 8.52 0.00 46.43 4.92
360 687 2.425592 CGGTGAACTGGCAGTCCA 59.574 61.111 22.31 12.63 40.85 4.02
403 730 2.056577 GCCTTACCGATTCGATTACCG 58.943 52.381 7.83 0.00 40.25 4.02
471 888 3.426787 TCAAACCGAATGAGCCCTTAA 57.573 42.857 0.00 0.00 0.00 1.85
540 964 3.423154 CGGTCGTCAAAGCCAGCC 61.423 66.667 0.00 0.00 0.00 4.85
633 1060 2.244651 GCGGATCGGGAATTCACGG 61.245 63.158 28.60 14.31 44.15 4.94
928 1377 4.403976 GACGATGGTCGAAGCCTC 57.596 61.111 6.34 0.00 43.74 4.70
929 1378 1.511305 GACGATGGTCGAAGCCTCA 59.489 57.895 6.34 0.00 43.74 3.86
930 1379 0.103208 GACGATGGTCGAAGCCTCAT 59.897 55.000 6.34 0.00 43.74 2.90
931 1380 0.103208 ACGATGGTCGAAGCCTCATC 59.897 55.000 6.34 0.00 43.74 2.92
932 1381 0.598680 CGATGGTCGAAGCCTCATCC 60.599 60.000 0.00 0.00 43.74 3.51
933 1382 0.755686 GATGGTCGAAGCCTCATCCT 59.244 55.000 0.00 0.00 32.27 3.24
934 1383 0.755686 ATGGTCGAAGCCTCATCCTC 59.244 55.000 0.00 0.00 0.00 3.71
939 1388 0.034616 CGAAGCCTCATCCTCCATCC 59.965 60.000 0.00 0.00 0.00 3.51
1034 1489 2.047179 GGACGAGAAGGGGCACAC 60.047 66.667 0.00 0.00 0.00 3.82
1111 1584 9.906660 CTAGGTCTATGCTAGATTTTGTTAGAG 57.093 37.037 0.00 0.00 37.13 2.43
1113 1586 8.763601 AGGTCTATGCTAGATTTTGTTAGAGTT 58.236 33.333 0.00 0.00 37.13 3.01
1227 1748 0.759346 AGCTTGGTTCCTCGTCACTT 59.241 50.000 0.00 0.00 0.00 3.16
1251 1772 2.339712 GCTGGTTGCCGCATTTGT 59.660 55.556 0.00 0.00 35.15 2.83
1252 1773 1.583986 GCTGGTTGCCGCATTTGTA 59.416 52.632 0.00 0.00 35.15 2.41
1254 1775 1.404047 GCTGGTTGCCGCATTTGTAAT 60.404 47.619 0.00 0.00 35.15 1.89
1255 1776 2.261345 CTGGTTGCCGCATTTGTAATG 58.739 47.619 0.00 0.00 0.00 1.90
1256 1777 1.615883 TGGTTGCCGCATTTGTAATGT 59.384 42.857 0.00 0.00 0.00 2.71
1257 1778 1.991965 GGTTGCCGCATTTGTAATGTG 59.008 47.619 0.00 6.08 0.00 3.21
1261 1782 0.529833 CCGCATTTGTAATGTGGCCA 59.470 50.000 16.41 0.00 41.97 5.36
1262 1783 1.136695 CCGCATTTGTAATGTGGCCAT 59.863 47.619 9.72 0.00 41.97 4.40
1264 1785 2.604011 CGCATTTGTAATGTGGCCATTG 59.396 45.455 9.72 0.00 41.37 2.82
1267 1788 3.674528 TTTGTAATGTGGCCATTGGTG 57.325 42.857 9.72 0.00 41.37 4.17
1271 1795 1.193462 AATGTGGCCATTGGTGGGTG 61.193 55.000 9.72 0.00 46.14 4.61
1321 1850 8.597167 CATGATTATAGAGAAACCCCTCATGTA 58.403 37.037 0.00 0.00 35.13 2.29
1384 1921 9.520515 AACTCTTGTATAGGATCAACAACAATT 57.479 29.630 0.00 0.00 0.00 2.32
1445 1994 2.048444 TTCCTAGTCCGCGTAGATGT 57.952 50.000 4.92 0.00 0.00 3.06
1474 2023 5.603596 TGTCAAGTACATACTTCAACGGTT 58.396 37.500 1.18 0.00 44.19 4.44
1608 2196 2.502947 CTCTGAGTCATCAATGTCCCCA 59.497 50.000 0.00 0.00 34.23 4.96
1648 2236 7.013529 GCTGAAAATTGCAAAAATGTCTCATC 58.986 34.615 1.71 0.00 0.00 2.92
1654 2242 6.638096 TTGCAAAAATGTCTCATCTCAGAA 57.362 33.333 0.00 0.00 0.00 3.02
1973 2757 4.766375 CACCTATAAACGACCACTTGGAT 58.234 43.478 1.14 0.00 38.94 3.41
1974 2758 5.183228 CACCTATAAACGACCACTTGGATT 58.817 41.667 1.14 0.00 38.94 3.01
2040 2824 0.476338 TGCTACCCTTTGGCTGTTGA 59.524 50.000 0.00 0.00 33.59 3.18
2060 2844 8.801715 TGTTGATTCTTGCTTTTGTTAGAATC 57.198 30.769 13.86 13.86 46.70 2.52
2156 2940 5.932303 ACATATCCATATCGGTGCAAAGTAC 59.068 40.000 0.00 0.00 35.57 2.73
2617 3586 5.485708 GGTAATTCCCAGGTGAGAGCTATAT 59.514 44.000 0.00 0.00 0.00 0.86
2668 3637 6.072783 GCTGAAACCAATATTCATAGAGAGGC 60.073 42.308 0.00 0.00 36.30 4.70
2883 3858 7.802738 TGTTTGCATACATTACCTATTATCGC 58.197 34.615 5.83 0.00 0.00 4.58
2950 3925 6.260870 ACGGAGTATCATGTAGCAGATAAG 57.739 41.667 0.00 0.00 41.94 1.73
2951 3926 5.184096 ACGGAGTATCATGTAGCAGATAAGG 59.816 44.000 0.00 0.00 41.94 2.69
2952 3927 5.415221 GGAGTATCATGTAGCAGATAAGGC 58.585 45.833 0.00 0.00 36.25 4.35
2953 3928 5.413309 AGTATCATGTAGCAGATAAGGCC 57.587 43.478 0.00 0.00 0.00 5.19
2954 3929 5.090139 AGTATCATGTAGCAGATAAGGCCT 58.910 41.667 0.00 0.00 0.00 5.19
2955 3930 4.550076 ATCATGTAGCAGATAAGGCCTC 57.450 45.455 5.23 0.00 0.00 4.70
2956 3931 2.634940 TCATGTAGCAGATAAGGCCTCC 59.365 50.000 5.23 0.00 0.00 4.30
2957 3932 2.478872 TGTAGCAGATAAGGCCTCCT 57.521 50.000 5.23 0.13 33.87 3.69
2958 3933 2.764269 TGTAGCAGATAAGGCCTCCTT 58.236 47.619 5.23 3.40 46.63 3.36
2959 3934 3.115390 TGTAGCAGATAAGGCCTCCTTT 58.885 45.455 5.23 0.00 41.69 3.11
2960 3935 2.725221 AGCAGATAAGGCCTCCTTTG 57.275 50.000 5.23 4.16 41.69 2.77
2961 3936 1.213926 AGCAGATAAGGCCTCCTTTGG 59.786 52.381 5.23 0.00 41.69 3.28
2962 3937 1.064389 GCAGATAAGGCCTCCTTTGGT 60.064 52.381 5.23 0.00 41.69 3.67
2963 3938 2.621668 GCAGATAAGGCCTCCTTTGGTT 60.622 50.000 5.23 0.00 41.69 3.67
2964 3939 3.701664 CAGATAAGGCCTCCTTTGGTTT 58.298 45.455 5.23 0.00 41.69 3.27
2965 3940 3.445096 CAGATAAGGCCTCCTTTGGTTTG 59.555 47.826 5.23 0.00 41.69 2.93
2966 3941 2.302587 TAAGGCCTCCTTTGGTTTGG 57.697 50.000 5.23 0.00 41.69 3.28
2967 3942 0.560688 AAGGCCTCCTTTGGTTTGGA 59.439 50.000 5.23 0.00 41.69 3.53
2968 3943 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86
2975 3950 5.551305 CTCCTTTGGTTTGGAGGAATTTT 57.449 39.130 0.00 0.00 44.44 1.82
2976 3951 5.289083 TCCTTTGGTTTGGAGGAATTTTG 57.711 39.130 0.00 0.00 36.67 2.44
2977 3952 3.814842 CCTTTGGTTTGGAGGAATTTTGC 59.185 43.478 0.00 0.00 32.11 3.68
2978 3953 4.450053 CTTTGGTTTGGAGGAATTTTGCA 58.550 39.130 0.00 0.00 0.00 4.08
2979 3954 3.749665 TGGTTTGGAGGAATTTTGCAG 57.250 42.857 0.00 0.00 0.00 4.41
2980 3955 2.368221 TGGTTTGGAGGAATTTTGCAGG 59.632 45.455 0.00 0.00 0.00 4.85
2981 3956 2.632512 GGTTTGGAGGAATTTTGCAGGA 59.367 45.455 0.00 0.00 0.00 3.86
2982 3957 3.261643 GGTTTGGAGGAATTTTGCAGGAT 59.738 43.478 0.00 0.00 0.00 3.24
2983 3958 4.263025 GGTTTGGAGGAATTTTGCAGGATT 60.263 41.667 0.00 0.00 0.00 3.01
2984 3959 5.308014 GTTTGGAGGAATTTTGCAGGATTT 58.692 37.500 0.00 0.00 0.00 2.17
2985 3960 5.565455 TTGGAGGAATTTTGCAGGATTTT 57.435 34.783 0.00 0.00 0.00 1.82
2986 3961 5.151297 TGGAGGAATTTTGCAGGATTTTC 57.849 39.130 0.00 0.00 0.00 2.29
2987 3962 4.592351 TGGAGGAATTTTGCAGGATTTTCA 59.408 37.500 0.00 0.00 0.00 2.69
2988 3963 5.248934 TGGAGGAATTTTGCAGGATTTTCAT 59.751 36.000 0.00 0.00 0.00 2.57
2989 3964 6.440010 TGGAGGAATTTTGCAGGATTTTCATA 59.560 34.615 0.00 0.00 0.00 2.15
2990 3965 6.982724 GGAGGAATTTTGCAGGATTTTCATAG 59.017 38.462 0.00 0.00 0.00 2.23
2991 3966 6.881570 AGGAATTTTGCAGGATTTTCATAGG 58.118 36.000 0.00 0.00 0.00 2.57
2992 3967 6.669154 AGGAATTTTGCAGGATTTTCATAGGA 59.331 34.615 0.00 0.00 0.00 2.94
2993 3968 7.346436 AGGAATTTTGCAGGATTTTCATAGGAT 59.654 33.333 0.00 0.00 0.00 3.24
2994 3969 8.641541 GGAATTTTGCAGGATTTTCATAGGATA 58.358 33.333 0.00 0.00 0.00 2.59
2995 3970 9.688592 GAATTTTGCAGGATTTTCATAGGATAG 57.311 33.333 0.00 0.00 0.00 2.08
2996 3971 7.587037 TTTTGCAGGATTTTCATAGGATAGG 57.413 36.000 0.00 0.00 0.00 2.57
2997 3972 6.514012 TTGCAGGATTTTCATAGGATAGGA 57.486 37.500 0.00 0.00 0.00 2.94
2998 3973 6.708885 TGCAGGATTTTCATAGGATAGGAT 57.291 37.500 0.00 0.00 28.27 3.24
2999 3974 7.095183 TGCAGGATTTTCATAGGATAGGATT 57.905 36.000 0.00 0.00 28.27 3.01
3000 3975 7.529555 TGCAGGATTTTCATAGGATAGGATTT 58.470 34.615 0.00 0.00 28.27 2.17
3001 3976 7.667219 TGCAGGATTTTCATAGGATAGGATTTC 59.333 37.037 0.00 0.00 28.27 2.17
3002 3977 7.887495 GCAGGATTTTCATAGGATAGGATTTCT 59.113 37.037 0.00 0.00 28.27 2.52
3028 4003 5.973899 GGAAAAATTCCTTCAGAGCTCTT 57.026 39.130 15.27 0.00 46.57 2.85
3029 4004 6.338214 GGAAAAATTCCTTCAGAGCTCTTT 57.662 37.500 15.27 1.02 46.57 2.52
3030 4005 6.155136 GGAAAAATTCCTTCAGAGCTCTTTG 58.845 40.000 15.27 4.87 46.57 2.77
3031 4006 5.718724 AAAATTCCTTCAGAGCTCTTTGG 57.281 39.130 15.27 15.93 0.00 3.28
3032 4007 4.379302 AATTCCTTCAGAGCTCTTTGGT 57.621 40.909 15.27 0.00 0.00 3.67
3033 4008 3.864789 TTCCTTCAGAGCTCTTTGGTT 57.135 42.857 15.27 0.00 0.00 3.67
3034 4009 3.864789 TCCTTCAGAGCTCTTTGGTTT 57.135 42.857 15.27 0.00 0.00 3.27
3035 4010 3.480470 TCCTTCAGAGCTCTTTGGTTTG 58.520 45.455 15.27 1.50 0.00 2.93
3036 4011 3.117888 TCCTTCAGAGCTCTTTGGTTTGT 60.118 43.478 15.27 0.00 31.30 2.83
3037 4012 4.102524 TCCTTCAGAGCTCTTTGGTTTGTA 59.897 41.667 15.27 0.00 31.30 2.41
3038 4013 4.453819 CCTTCAGAGCTCTTTGGTTTGTAG 59.546 45.833 15.27 5.08 31.30 2.74
3039 4014 4.008074 TCAGAGCTCTTTGGTTTGTAGG 57.992 45.455 15.27 0.00 31.30 3.18
3040 4015 3.646162 TCAGAGCTCTTTGGTTTGTAGGA 59.354 43.478 15.27 0.20 31.30 2.94
3041 4016 4.102524 TCAGAGCTCTTTGGTTTGTAGGAA 59.897 41.667 15.27 0.00 31.30 3.36
3042 4017 5.006386 CAGAGCTCTTTGGTTTGTAGGAAT 58.994 41.667 15.27 0.00 0.00 3.01
3043 4018 5.006386 AGAGCTCTTTGGTTTGTAGGAATG 58.994 41.667 11.45 0.00 0.00 2.67
3044 4019 4.985538 AGCTCTTTGGTTTGTAGGAATGA 58.014 39.130 0.00 0.00 0.00 2.57
3045 4020 5.385198 AGCTCTTTGGTTTGTAGGAATGAA 58.615 37.500 0.00 0.00 0.00 2.57
3046 4021 5.833131 AGCTCTTTGGTTTGTAGGAATGAAA 59.167 36.000 0.00 0.00 0.00 2.69
3047 4022 6.494835 AGCTCTTTGGTTTGTAGGAATGAAAT 59.505 34.615 0.00 0.00 0.00 2.17
3048 4023 6.808704 GCTCTTTGGTTTGTAGGAATGAAATC 59.191 38.462 0.00 0.00 0.00 2.17
3049 4024 7.227049 TCTTTGGTTTGTAGGAATGAAATCC 57.773 36.000 0.00 0.00 39.96 3.01
3063 4038 7.115414 GGAATGAAATCCTATTCCTATGGAGG 58.885 42.308 8.37 0.00 45.66 4.30
3064 4039 7.037297 GGAATGAAATCCTATTCCTATGGAGGA 60.037 40.741 8.37 0.00 45.66 3.71
3084 4059 5.574970 GGAATTCTTCCTATCCTCCACAT 57.425 43.478 5.23 0.00 46.57 3.21
3085 4060 5.946486 GGAATTCTTCCTATCCTCCACATT 58.054 41.667 5.23 0.00 46.57 2.71
3086 4061 6.368805 GGAATTCTTCCTATCCTCCACATTT 58.631 40.000 5.23 0.00 46.57 2.32
3087 4062 6.488344 GGAATTCTTCCTATCCTCCACATTTC 59.512 42.308 5.23 0.00 46.57 2.17
3088 4063 6.581388 ATTCTTCCTATCCTCCACATTTCA 57.419 37.500 0.00 0.00 0.00 2.69
3089 4064 6.581388 TTCTTCCTATCCTCCACATTTCAT 57.419 37.500 0.00 0.00 0.00 2.57
3090 4065 7.690454 TTCTTCCTATCCTCCACATTTCATA 57.310 36.000 0.00 0.00 0.00 2.15
3091 4066 7.308450 TCTTCCTATCCTCCACATTTCATAG 57.692 40.000 0.00 0.00 0.00 2.23
3092 4067 6.270927 TCTTCCTATCCTCCACATTTCATAGG 59.729 42.308 0.00 0.00 35.93 2.57
3093 4068 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
3094 4069 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
3095 4070 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
3096 4071 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
3097 4072 7.229506 CCTATCCTCCACATTTCATAGGAAAAC 59.770 40.741 6.65 0.00 45.52 2.43
3098 4073 5.886609 TCCTCCACATTTCATAGGAAAACA 58.113 37.500 6.65 0.00 45.52 2.83
3099 4074 6.310941 TCCTCCACATTTCATAGGAAAACAA 58.689 36.000 6.65 0.00 45.52 2.83
3100 4075 6.780031 TCCTCCACATTTCATAGGAAAACAAA 59.220 34.615 6.65 0.00 45.52 2.83
3101 4076 6.868339 CCTCCACATTTCATAGGAAAACAAAC 59.132 38.462 6.65 0.00 45.52 2.93
3102 4077 7.353414 TCCACATTTCATAGGAAAACAAACA 57.647 32.000 6.65 0.00 45.52 2.83
3103 4078 7.961351 TCCACATTTCATAGGAAAACAAACAT 58.039 30.769 6.65 0.00 45.52 2.71
3104 4079 8.428063 TCCACATTTCATAGGAAAACAAACATT 58.572 29.630 6.65 0.00 45.52 2.71
3105 4080 9.054922 CCACATTTCATAGGAAAACAAACATTT 57.945 29.630 6.65 0.00 45.52 2.32
3106 4081 9.866936 CACATTTCATAGGAAAACAAACATTTG 57.133 29.630 6.65 2.77 45.52 2.32
3107 4082 8.558700 ACATTTCATAGGAAAACAAACATTTGC 58.441 29.630 6.65 0.00 45.52 3.68
3108 4083 7.489574 TTTCATAGGAAAACAAACATTTGCC 57.510 32.000 0.00 0.00 39.96 4.52
3113 4088 5.842907 AGGAAAACAAACATTTGCCTAGAC 58.157 37.500 4.25 0.00 44.68 2.59
3114 4089 5.598417 AGGAAAACAAACATTTGCCTAGACT 59.402 36.000 4.25 0.00 44.68 3.24
3115 4090 5.920840 GGAAAACAAACATTTGCCTAGACTC 59.079 40.000 4.25 0.00 41.79 3.36
3116 4091 6.460953 GGAAAACAAACATTTGCCTAGACTCA 60.461 38.462 4.25 0.00 41.79 3.41
3117 4092 6.463995 AAACAAACATTTGCCTAGACTCAA 57.536 33.333 4.25 0.00 41.79 3.02
3118 4093 6.655078 AACAAACATTTGCCTAGACTCAAT 57.345 33.333 4.25 0.00 41.79 2.57
3119 4094 6.017400 ACAAACATTTGCCTAGACTCAATG 57.983 37.500 4.25 0.00 41.79 2.82
3120 4095 5.047802 ACAAACATTTGCCTAGACTCAATGG 60.048 40.000 4.25 0.00 41.79 3.16
3121 4096 4.574674 ACATTTGCCTAGACTCAATGGA 57.425 40.909 0.00 0.00 0.00 3.41
3122 4097 4.922206 ACATTTGCCTAGACTCAATGGAA 58.078 39.130 0.00 0.00 0.00 3.53
3123 4098 5.324409 ACATTTGCCTAGACTCAATGGAAA 58.676 37.500 0.00 0.00 0.00 3.13
3124 4099 5.774690 ACATTTGCCTAGACTCAATGGAAAA 59.225 36.000 0.00 0.00 32.29 2.29
3125 4100 6.267471 ACATTTGCCTAGACTCAATGGAAAAA 59.733 34.615 0.00 0.00 31.60 1.94
3148 4123 6.780457 AAATCCTATGGTGTGAATCAAAGG 57.220 37.500 0.00 0.00 0.00 3.11
3149 4124 4.235079 TCCTATGGTGTGAATCAAAGGG 57.765 45.455 0.00 0.00 0.00 3.95
3150 4125 2.689983 CCTATGGTGTGAATCAAAGGGC 59.310 50.000 0.00 0.00 0.00 5.19
3151 4126 2.307496 ATGGTGTGAATCAAAGGGCA 57.693 45.000 0.00 0.00 0.00 5.36
3152 4127 2.307496 TGGTGTGAATCAAAGGGCAT 57.693 45.000 0.00 0.00 0.00 4.40
3153 4128 2.170166 TGGTGTGAATCAAAGGGCATC 58.830 47.619 0.00 0.00 0.00 3.91
3154 4129 2.225091 TGGTGTGAATCAAAGGGCATCT 60.225 45.455 0.00 0.00 0.00 2.90
3155 4130 2.424956 GGTGTGAATCAAAGGGCATCTC 59.575 50.000 0.00 0.00 0.00 2.75
3156 4131 3.350833 GTGTGAATCAAAGGGCATCTCT 58.649 45.455 0.00 0.00 0.00 3.10
3157 4132 3.760684 GTGTGAATCAAAGGGCATCTCTT 59.239 43.478 0.00 0.00 0.00 2.85
3158 4133 4.219288 GTGTGAATCAAAGGGCATCTCTTT 59.781 41.667 0.00 0.00 35.09 2.52
3159 4134 4.834496 TGTGAATCAAAGGGCATCTCTTTT 59.166 37.500 0.00 0.00 32.72 2.27
3160 4135 5.305128 TGTGAATCAAAGGGCATCTCTTTTT 59.695 36.000 0.00 0.00 32.72 1.94
3161 4136 5.866092 GTGAATCAAAGGGCATCTCTTTTTC 59.134 40.000 0.00 0.00 32.72 2.29
3162 4137 5.776716 TGAATCAAAGGGCATCTCTTTTTCT 59.223 36.000 5.65 0.00 32.72 2.52
3163 4138 6.947733 TGAATCAAAGGGCATCTCTTTTTCTA 59.052 34.615 5.65 0.00 32.72 2.10
3164 4139 7.616935 TGAATCAAAGGGCATCTCTTTTTCTAT 59.383 33.333 5.65 0.00 32.72 1.98
3165 4140 7.968014 ATCAAAGGGCATCTCTTTTTCTATT 57.032 32.000 0.00 0.00 32.72 1.73
3166 4141 7.396540 TCAAAGGGCATCTCTTTTTCTATTC 57.603 36.000 0.00 0.00 32.72 1.75
3167 4142 6.378280 TCAAAGGGCATCTCTTTTTCTATTCC 59.622 38.462 0.00 0.00 32.72 3.01
3168 4143 5.723860 AGGGCATCTCTTTTTCTATTCCT 57.276 39.130 0.00 0.00 0.00 3.36
3169 4144 6.831664 AGGGCATCTCTTTTTCTATTCCTA 57.168 37.500 0.00 0.00 0.00 2.94
3170 4145 7.399674 AGGGCATCTCTTTTTCTATTCCTAT 57.600 36.000 0.00 0.00 0.00 2.57
3171 4146 7.230027 AGGGCATCTCTTTTTCTATTCCTATG 58.770 38.462 0.00 0.00 0.00 2.23
3172 4147 6.072230 GGGCATCTCTTTTTCTATTCCTATGC 60.072 42.308 0.00 0.00 36.22 3.14
3173 4148 6.488006 GGCATCTCTTTTTCTATTCCTATGCA 59.512 38.462 0.00 0.00 38.14 3.96
3174 4149 7.176340 GGCATCTCTTTTTCTATTCCTATGCAT 59.824 37.037 3.79 3.79 38.14 3.96
3175 4150 9.224267 GCATCTCTTTTTCTATTCCTATGCATA 57.776 33.333 6.20 6.20 36.79 3.14
3193 4168 5.044428 GCATAGGATTTGAGATGCATGTC 57.956 43.478 16.63 16.63 43.36 3.06
3194 4169 4.517832 GCATAGGATTTGAGATGCATGTCA 59.482 41.667 21.70 21.70 43.36 3.58
3195 4170 5.183331 GCATAGGATTTGAGATGCATGTCAT 59.817 40.000 25.41 13.07 43.36 3.06
3208 4183 6.819397 ATGCATGTCATCTCATTTCCTATG 57.181 37.500 0.00 0.00 0.00 2.23
3209 4184 5.932455 TGCATGTCATCTCATTTCCTATGA 58.068 37.500 0.00 0.00 0.00 2.15
3210 4185 5.761726 TGCATGTCATCTCATTTCCTATGAC 59.238 40.000 7.23 7.23 45.40 3.06
3211 4186 5.996513 GCATGTCATCTCATTTCCTATGACT 59.003 40.000 13.59 0.19 45.40 3.41
3212 4187 6.485984 GCATGTCATCTCATTTCCTATGACTT 59.514 38.462 13.59 6.42 45.40 3.01
3213 4188 7.013083 GCATGTCATCTCATTTCCTATGACTTT 59.987 37.037 13.59 1.75 45.40 2.66
3214 4189 8.557864 CATGTCATCTCATTTCCTATGACTTTC 58.442 37.037 13.59 0.00 45.40 2.62
3215 4190 7.050377 TGTCATCTCATTTCCTATGACTTTCC 58.950 38.462 13.59 0.00 45.40 3.13
3216 4191 7.092712 TGTCATCTCATTTCCTATGACTTTCCT 60.093 37.037 13.59 0.00 45.40 3.36
3217 4192 8.424918 GTCATCTCATTTCCTATGACTTTCCTA 58.575 37.037 0.00 0.00 43.07 2.94
3218 4193 9.163894 TCATCTCATTTCCTATGACTTTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
3219 4194 9.790344 CATCTCATTTCCTATGACTTTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
3221 4196 8.432805 TCTCATTTCCTATGACTTTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
3222 4197 8.337118 TCATTTCCTATGACTTTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
3223 4198 9.447279 TCATTTCCTATGACTTTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
3226 4201 9.447279 TTTCCTATGACTTTCCTATTCCTATGA 57.553 33.333 0.00 0.00 0.00 2.15
3227 4202 9.621239 TTCCTATGACTTTCCTATTCCTATGAT 57.379 33.333 0.00 0.00 0.00 2.45
3228 4203 9.621239 TCCTATGACTTTCCTATTCCTATGATT 57.379 33.333 0.00 0.00 0.00 2.57
3232 4207 8.980481 TGACTTTCCTATTCCTATGATTTTCC 57.020 34.615 0.00 0.00 0.00 3.13
3233 4208 8.556589 TGACTTTCCTATTCCTATGATTTTCCA 58.443 33.333 0.00 0.00 0.00 3.53
3234 4209 9.408648 GACTTTCCTATTCCTATGATTTTCCAA 57.591 33.333 0.00 0.00 0.00 3.53
3235 4210 9.942526 ACTTTCCTATTCCTATGATTTTCCAAT 57.057 29.630 0.00 0.00 0.00 3.16
3237 4212 8.940397 TTCCTATTCCTATGATTTTCCAATCC 57.060 34.615 0.00 0.00 38.50 3.01
3238 4213 8.293027 TCCTATTCCTATGATTTTCCAATCCT 57.707 34.615 0.00 0.00 38.50 3.24
3239 4214 9.405369 TCCTATTCCTATGATTTTCCAATCCTA 57.595 33.333 0.00 0.00 38.50 2.94
3244 4219 8.924511 TCCTATGATTTTCCAATCCTATGAAC 57.075 34.615 0.00 0.00 38.50 3.18
3245 4220 7.944554 TCCTATGATTTTCCAATCCTATGAACC 59.055 37.037 0.00 0.00 38.50 3.62
3246 4221 7.725397 CCTATGATTTTCCAATCCTATGAACCA 59.275 37.037 0.00 0.00 38.50 3.67
3247 4222 7.976414 ATGATTTTCCAATCCTATGAACCAA 57.024 32.000 0.00 0.00 38.50 3.67
3248 4223 7.789202 TGATTTTCCAATCCTATGAACCAAA 57.211 32.000 0.00 0.00 38.50 3.28
3249 4224 7.839907 TGATTTTCCAATCCTATGAACCAAAG 58.160 34.615 0.00 0.00 38.50 2.77
3250 4225 6.603940 TTTTCCAATCCTATGAACCAAAGG 57.396 37.500 0.00 0.00 0.00 3.11
3251 4226 5.528600 TTCCAATCCTATGAACCAAAGGA 57.471 39.130 0.00 0.00 43.38 3.36
3252 4227 5.116084 TCCAATCCTATGAACCAAAGGAG 57.884 43.478 0.00 0.00 42.53 3.69
3253 4228 4.079787 TCCAATCCTATGAACCAAAGGAGG 60.080 45.833 0.00 0.00 42.53 4.30
3254 4229 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
3255 4230 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
3256 4231 1.566231 CCTATGAACCAAAGGAGGCCT 59.434 52.381 3.86 3.86 33.87 5.19
3257 4232 2.777692 CCTATGAACCAAAGGAGGCCTA 59.222 50.000 4.42 0.00 31.13 3.93
3308 4283 1.368641 TCATGTCAGTAATGCACGCC 58.631 50.000 0.00 0.00 0.00 5.68
3345 4320 8.253113 ACATTCACTTTTCTTTGTCAAATGAGT 58.747 29.630 0.00 0.00 0.00 3.41
3378 4353 9.214957 ACAGATCGTGTTTCAAGAATGTAAATA 57.785 29.630 5.62 0.00 34.94 1.40
3395 4370 7.081857 TGTAAATAGGTGGAAACTGGTAGTT 57.918 36.000 0.00 0.00 40.80 2.24
3472 4449 5.786311 AGCACAACTGAAAATGCATATTGT 58.214 33.333 0.00 1.83 40.63 2.71
3576 4564 2.189784 GGAGAAACCCTAGCCGCC 59.810 66.667 0.00 0.00 0.00 6.13
5293 8221 3.585289 TGATGGGTGCTAAGTTCTTGGTA 59.415 43.478 0.00 0.00 0.00 3.25
5579 10649 7.488322 ACAACCATTTAAATATCCGGTGATTG 58.512 34.615 0.00 6.44 32.18 2.67
5678 13065 6.403636 CGGTTTATCTTCTTTGCAGCTATTGT 60.404 38.462 0.00 0.00 0.00 2.71
5971 13358 4.763073 TCAGGTGATCTTGCAATACTCAG 58.237 43.478 0.00 0.00 0.00 3.35
6005 13392 5.794687 TGTTTATACCGACTGCAAAGATG 57.205 39.130 0.00 0.00 0.00 2.90
6272 13662 4.946772 TGTTTGTTCACTCATTTCAGTCCA 59.053 37.500 0.00 0.00 0.00 4.02
6410 13802 3.206150 CCAATAGTGAAATCTCCGGTGG 58.794 50.000 0.00 0.00 0.00 4.61
6469 15823 5.433526 TGTGGCAAATAGGGACTTGTATAC 58.566 41.667 0.00 0.00 41.75 1.47
6521 15879 3.076621 ACATGTCTAGTGCACCATTGTG 58.923 45.455 14.63 8.58 45.65 3.33
6708 16068 8.324567 TCGTTTGATTTTGCATTTAAAACTGTC 58.675 29.630 0.00 0.00 32.86 3.51
6789 16149 1.920835 GTGAAGGAGGAGGTGGGCT 60.921 63.158 0.00 0.00 0.00 5.19
6827 16187 2.292103 AGCTGACAGAGATCGCTTTC 57.708 50.000 6.65 5.74 0.00 2.62
6828 16188 1.547820 AGCTGACAGAGATCGCTTTCA 59.452 47.619 13.65 13.65 0.00 2.69
6903 16263 5.622233 GCCAAATAAGTGACCAAGGTTGATC 60.622 44.000 0.00 0.00 0.00 2.92
6974 20194 1.480954 GGTCGAACTATGGCCTCTTCA 59.519 52.381 3.32 0.00 0.00 3.02
6987 20207 3.321111 GGCCTCTTCATCGGTTGTCTATA 59.679 47.826 0.00 0.00 0.00 1.31
7049 20269 2.370849 TCTCTTAGGGCTTGTTCGGTTT 59.629 45.455 0.00 0.00 0.00 3.27
7051 20271 4.224370 TCTCTTAGGGCTTGTTCGGTTTAT 59.776 41.667 0.00 0.00 0.00 1.40
7052 20272 5.422970 TCTCTTAGGGCTTGTTCGGTTTATA 59.577 40.000 0.00 0.00 0.00 0.98
7053 20273 5.667466 TCTTAGGGCTTGTTCGGTTTATAG 58.333 41.667 0.00 0.00 0.00 1.31
7054 20274 5.422970 TCTTAGGGCTTGTTCGGTTTATAGA 59.577 40.000 0.00 0.00 0.00 1.98
7055 20275 4.138487 AGGGCTTGTTCGGTTTATAGAG 57.862 45.455 0.00 0.00 0.00 2.43
7056 20276 3.118371 AGGGCTTGTTCGGTTTATAGAGG 60.118 47.826 0.00 0.00 0.00 3.69
7057 20277 3.118519 GGGCTTGTTCGGTTTATAGAGGA 60.119 47.826 0.00 0.00 0.00 3.71
7058 20278 4.444449 GGGCTTGTTCGGTTTATAGAGGAT 60.444 45.833 0.00 0.00 0.00 3.24
7059 20279 5.123936 GGCTTGTTCGGTTTATAGAGGATT 58.876 41.667 0.00 0.00 0.00 3.01
7113 20333 3.704231 CTGCATCCCCTCAACCCCG 62.704 68.421 0.00 0.00 0.00 5.73
7124 20344 0.838554 TCAACCCCGTCCAATCCTCA 60.839 55.000 0.00 0.00 0.00 3.86
7149 20369 1.204941 ACCAGCGGAGAGTACAATCAC 59.795 52.381 0.00 0.00 0.00 3.06
7177 20397 6.793492 AATTCTTGTGACAGTAGCTTCTTC 57.207 37.500 0.00 0.00 0.00 2.87
7179 20399 2.724977 TGTGACAGTAGCTTCTTCGG 57.275 50.000 0.00 0.00 0.00 4.30
7190 20410 5.659971 AGTAGCTTCTTCGGGATAGGTTTAA 59.340 40.000 0.00 0.00 0.00 1.52
7191 20411 4.767478 AGCTTCTTCGGGATAGGTTTAAC 58.233 43.478 0.00 0.00 0.00 2.01
7192 20412 3.875727 GCTTCTTCGGGATAGGTTTAACC 59.124 47.826 5.91 5.91 38.99 2.85
7193 20413 3.806625 TCTTCGGGATAGGTTTAACCG 57.193 47.619 8.63 0.00 44.90 4.44
7200 20420 5.556355 GGGATAGGTTTAACCGAACAAAG 57.444 43.478 8.63 0.00 44.90 2.77
7201 20421 5.247862 GGGATAGGTTTAACCGAACAAAGA 58.752 41.667 8.63 0.00 44.90 2.52
7202 20422 5.122869 GGGATAGGTTTAACCGAACAAAGAC 59.877 44.000 8.63 0.00 44.90 3.01
7203 20423 5.122869 GGATAGGTTTAACCGAACAAAGACC 59.877 44.000 8.63 0.79 44.90 3.85
7204 20424 3.888583 AGGTTTAACCGAACAAAGACCA 58.111 40.909 8.63 0.00 44.90 4.02
7205 20425 3.881089 AGGTTTAACCGAACAAAGACCAG 59.119 43.478 8.63 0.00 44.90 4.00
7206 20426 3.549423 GGTTTAACCGAACAAAGACCAGC 60.549 47.826 0.00 0.00 0.00 4.85
7207 20427 1.504359 TAACCGAACAAAGACCAGCG 58.496 50.000 0.00 0.00 0.00 5.18
7208 20428 0.179067 AACCGAACAAAGACCAGCGA 60.179 50.000 0.00 0.00 0.00 4.93
7209 20429 0.179067 ACCGAACAAAGACCAGCGAA 60.179 50.000 0.00 0.00 0.00 4.70
7210 20430 0.512952 CCGAACAAAGACCAGCGAAG 59.487 55.000 0.00 0.00 0.00 3.79
7251 20471 4.021894 ACTGTCAAGAATAGCTCGAACTGT 60.022 41.667 0.00 0.00 0.00 3.55
7252 20472 4.237724 TGTCAAGAATAGCTCGAACTGTG 58.762 43.478 0.00 0.00 0.00 3.66
7253 20473 3.614616 GTCAAGAATAGCTCGAACTGTGG 59.385 47.826 0.00 0.00 0.00 4.17
7254 20474 3.509967 TCAAGAATAGCTCGAACTGTGGA 59.490 43.478 0.00 0.00 0.00 4.02
7255 20475 3.512033 AGAATAGCTCGAACTGTGGAC 57.488 47.619 0.00 0.00 0.00 4.02
7256 20476 2.159366 AGAATAGCTCGAACTGTGGACG 60.159 50.000 0.00 0.00 0.00 4.79
7257 20477 1.174783 ATAGCTCGAACTGTGGACGT 58.825 50.000 0.00 0.00 0.00 4.34
7258 20478 0.240145 TAGCTCGAACTGTGGACGTG 59.760 55.000 0.00 0.00 0.00 4.49
7259 20479 1.299926 GCTCGAACTGTGGACGTGT 60.300 57.895 0.00 0.00 0.00 4.49
7260 20480 0.874607 GCTCGAACTGTGGACGTGTT 60.875 55.000 0.00 0.00 0.00 3.32
7261 20481 1.567504 CTCGAACTGTGGACGTGTTT 58.432 50.000 0.00 0.00 0.00 2.83
7262 20482 1.257936 CTCGAACTGTGGACGTGTTTG 59.742 52.381 0.00 0.00 0.00 2.93
7263 20483 0.315869 CGAACTGTGGACGTGTTTGC 60.316 55.000 0.00 0.00 0.00 3.68
7264 20484 1.014352 GAACTGTGGACGTGTTTGCT 58.986 50.000 0.00 0.00 0.00 3.91
7265 20485 1.400494 GAACTGTGGACGTGTTTGCTT 59.600 47.619 0.00 0.00 0.00 3.91
7266 20486 1.014352 ACTGTGGACGTGTTTGCTTC 58.986 50.000 0.00 0.00 0.00 3.86
7267 20487 1.013596 CTGTGGACGTGTTTGCTTCA 58.986 50.000 0.00 0.00 0.00 3.02
7268 20488 0.730265 TGTGGACGTGTTTGCTTCAC 59.270 50.000 0.00 0.00 0.00 3.18
7269 20489 0.730265 GTGGACGTGTTTGCTTCACA 59.270 50.000 0.00 0.00 35.79 3.58
7270 20490 1.013596 TGGACGTGTTTGCTTCACAG 58.986 50.000 0.00 3.54 35.79 3.66
7271 20491 1.295792 GGACGTGTTTGCTTCACAGA 58.704 50.000 0.00 0.00 35.79 3.41
7272 20492 1.873591 GGACGTGTTTGCTTCACAGAT 59.126 47.619 0.00 0.00 35.79 2.90
7273 20493 2.349817 GGACGTGTTTGCTTCACAGATG 60.350 50.000 0.00 0.00 35.79 2.90
7274 20494 1.603802 ACGTGTTTGCTTCACAGATGG 59.396 47.619 0.00 0.00 35.79 3.51
7275 20495 1.603802 CGTGTTTGCTTCACAGATGGT 59.396 47.619 7.12 0.00 35.79 3.55
7276 20496 2.805671 CGTGTTTGCTTCACAGATGGTA 59.194 45.455 7.12 0.00 35.79 3.25
7277 20497 3.249799 CGTGTTTGCTTCACAGATGGTAA 59.750 43.478 7.12 0.00 35.79 2.85
7278 20498 4.537015 GTGTTTGCTTCACAGATGGTAAC 58.463 43.478 0.00 0.00 36.05 2.50
7279 20499 3.249799 TGTTTGCTTCACAGATGGTAACG 59.750 43.478 0.00 0.00 42.51 3.18
7326 20546 7.389607 TCACATGATGTATTAGATGCAGAATGG 59.610 37.037 0.00 0.00 35.86 3.16
7346 20566 4.062293 TGGACAAATACAGTCTCGTTTGG 58.938 43.478 0.00 0.00 36.23 3.28
7349 20569 5.008316 GGACAAATACAGTCTCGTTTGGTTT 59.992 40.000 0.00 0.00 36.23 3.27
7350 20570 6.203338 GGACAAATACAGTCTCGTTTGGTTTA 59.797 38.462 0.00 0.00 36.23 2.01
7351 20571 7.254863 GGACAAATACAGTCTCGTTTGGTTTAA 60.255 37.037 0.00 0.00 36.23 1.52
7352 20572 7.412063 ACAAATACAGTCTCGTTTGGTTTAAC 58.588 34.615 0.00 0.00 36.23 2.01
7353 20573 6.549912 AATACAGTCTCGTTTGGTTTAACC 57.450 37.500 7.27 7.27 39.22 2.85
7376 20596 3.670625 TGTAACGGAAATGACTCCCTTG 58.329 45.455 0.00 0.00 31.03 3.61
7386 20609 0.681733 GACTCCCTTGACACAGCAGA 59.318 55.000 0.00 0.00 0.00 4.26
7397 20620 0.107456 CACAGCAGACCAGAACCACT 59.893 55.000 0.00 0.00 0.00 4.00
7414 23534 7.965107 CAGAACCACTAATAAATGAACAGCTTC 59.035 37.037 0.00 0.00 0.00 3.86
7425 23545 4.541973 TGAACAGCTTCTCAGAGCAATA 57.458 40.909 0.00 0.00 45.12 1.90
7467 23587 9.744468 AAACATTCAACTTCTAAAATAAACGCT 57.256 25.926 0.00 0.00 0.00 5.07
7468 23588 9.744468 AACATTCAACTTCTAAAATAAACGCTT 57.256 25.926 0.00 0.00 0.00 4.68
7469 23589 9.744468 ACATTCAACTTCTAAAATAAACGCTTT 57.256 25.926 0.00 0.00 0.00 3.51
7527 24643 6.035112 GTCCGTTTCTGATACACTTTCATCTC 59.965 42.308 0.00 0.00 0.00 2.75
7623 25730 9.152595 CTCCCTCTTTAGTTGTACTATTGAAAC 57.847 37.037 0.00 0.00 29.64 2.78
7637 25744 6.498304 ACTATTGAAACAATCGCAATCATCC 58.502 36.000 0.00 0.00 34.41 3.51
7640 25747 4.674475 TGAAACAATCGCAATCATCCATG 58.326 39.130 0.00 0.00 0.00 3.66
7642 25749 5.356470 TGAAACAATCGCAATCATCCATGTA 59.644 36.000 0.00 0.00 0.00 2.29
7649 25756 6.245115 TCGCAATCATCCATGTAATCAATC 57.755 37.500 0.00 0.00 0.00 2.67
7673 25780 0.896923 TGGTTTGCAGCATGAATCCC 59.103 50.000 0.00 0.00 39.69 3.85
7685 25792 8.266473 TGCAGCATGAATCCCTTTTTAAAATAT 58.734 29.630 0.55 0.00 39.69 1.28
7686 25793 9.112725 GCAGCATGAATCCCTTTTTAAAATATT 57.887 29.630 0.55 0.58 39.69 1.28
7767 26373 8.385898 TCCTTCGTAAACAAAATGTAAGATGT 57.614 30.769 0.00 0.00 0.00 3.06
7769 26375 9.458374 CCTTCGTAAACAAAATGTAAGATGTTT 57.542 29.630 7.72 7.72 45.18 2.83
7783 26389 9.757227 ATGTAAGATGTTTTAGATCACTAGAGC 57.243 33.333 0.00 0.00 0.00 4.09
7784 26390 8.749354 TGTAAGATGTTTTAGATCACTAGAGCA 58.251 33.333 0.00 0.00 31.24 4.26
7785 26391 9.587772 GTAAGATGTTTTAGATCACTAGAGCAA 57.412 33.333 0.00 0.00 30.70 3.91
7790 26396 8.948631 TGTTTTAGATCACTAGAGCAATTAGG 57.051 34.615 0.00 0.00 30.99 2.69
7791 26397 8.758829 TGTTTTAGATCACTAGAGCAATTAGGA 58.241 33.333 0.00 0.00 30.99 2.94
7796 26402 8.900983 AGATCACTAGAGCAATTAGGAATTTC 57.099 34.615 0.00 0.00 30.99 2.17
7797 26403 8.713036 AGATCACTAGAGCAATTAGGAATTTCT 58.287 33.333 0.00 0.00 30.99 2.52
7799 26405 9.771534 ATCACTAGAGCAATTAGGAATTTCTAC 57.228 33.333 0.00 0.00 0.00 2.59
7800 26406 7.921214 TCACTAGAGCAATTAGGAATTTCTACG 59.079 37.037 0.00 0.00 0.00 3.51
7805 26876 7.770897 AGAGCAATTAGGAATTTCTACGAATGT 59.229 33.333 0.00 0.00 0.00 2.71
7807 26878 7.336931 AGCAATTAGGAATTTCTACGAATGTGT 59.663 33.333 0.00 0.00 0.00 3.72
7879 26951 4.584327 AAAAAGAATTTGACCGGAGTGG 57.416 40.909 9.46 0.00 39.02 4.00
7880 26952 2.200373 AAGAATTTGACCGGAGTGGG 57.800 50.000 9.46 0.00 44.64 4.61
7882 26954 1.916181 AGAATTTGACCGGAGTGGGAT 59.084 47.619 9.46 0.00 44.64 3.85
7883 26955 2.308866 AGAATTTGACCGGAGTGGGATT 59.691 45.455 9.46 0.00 44.64 3.01
7885 26957 1.904287 TTTGACCGGAGTGGGATTTG 58.096 50.000 9.46 0.00 44.64 2.32
7886 26958 1.060729 TTGACCGGAGTGGGATTTGA 58.939 50.000 9.46 0.00 44.64 2.69
7887 26959 1.060729 TGACCGGAGTGGGATTTGAA 58.939 50.000 9.46 0.00 44.64 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 0.390735 TTTCCTTCTAAGTCGCCGCC 60.391 55.000 0.00 0.00 0.00 6.13
56 57 1.435577 TTTTCCTTCTAAGTCGCCGC 58.564 50.000 0.00 0.00 0.00 6.53
95 96 3.534056 CCCCTACGCCACCGGTAG 61.534 72.222 6.87 0.00 39.22 3.18
146 148 2.283145 ATTGCTTCTGTCTGCCTGTT 57.717 45.000 0.00 0.00 0.00 3.16
149 151 1.407989 GGCTATTGCTTCTGTCTGCCT 60.408 52.381 0.00 0.00 39.59 4.75
305 629 7.012799 GGTTTGCTTTTGGGAAATTTTATCACA 59.987 33.333 0.00 0.00 37.56 3.58
355 682 3.208594 GTCAGGTTTTTACCGTTGGACT 58.791 45.455 0.00 0.00 34.28 3.85
360 687 3.208594 GTCTGGTCAGGTTTTTACCGTT 58.791 45.455 0.00 0.00 35.98 4.44
403 730 7.587629 AGTAGCATAGTTTTAAAAACCGAACC 58.412 34.615 1.31 0.00 0.00 3.62
453 870 3.081804 CAGTTAAGGGCTCATTCGGTTT 58.918 45.455 0.00 0.00 0.00 3.27
493 917 4.680237 CCAGTCCGTTCCGCTGCA 62.680 66.667 0.00 0.00 0.00 4.41
554 978 3.760035 TTCTGCGGCTCCGACTCC 61.760 66.667 13.11 0.00 42.83 3.85
830 1276 1.952621 TAAAGCTCACTGGCCTAGGT 58.047 50.000 11.31 0.00 0.00 3.08
923 1372 0.473501 GGAGGATGGAGGATGAGGCT 60.474 60.000 0.00 0.00 0.00 4.58
928 1377 1.670590 GAGCGGAGGATGGAGGATG 59.329 63.158 0.00 0.00 0.00 3.51
929 1378 1.905843 CGAGCGGAGGATGGAGGAT 60.906 63.158 0.00 0.00 0.00 3.24
930 1379 2.519541 CGAGCGGAGGATGGAGGA 60.520 66.667 0.00 0.00 0.00 3.71
931 1380 3.610669 CCGAGCGGAGGATGGAGG 61.611 72.222 2.00 0.00 37.50 4.30
932 1381 3.610669 CCCGAGCGGAGGATGGAG 61.611 72.222 11.05 0.00 37.50 3.86
1117 1590 8.627403 CCTCTCACTGCATGTTTTAATCAATAT 58.373 33.333 0.00 0.00 0.00 1.28
1251 1772 0.411452 ACCCACCAATGGCCACATTA 59.589 50.000 8.16 0.00 45.24 1.90
1254 1775 1.720077 TACACCCACCAATGGCCACA 61.720 55.000 8.16 0.00 45.76 4.17
1255 1776 0.324275 ATACACCCACCAATGGCCAC 60.324 55.000 8.16 0.00 45.76 5.01
1256 1777 0.324183 CATACACCCACCAATGGCCA 60.324 55.000 8.56 8.56 45.76 5.36
1257 1778 0.324275 ACATACACCCACCAATGGCC 60.324 55.000 0.00 0.00 45.76 5.36
1259 1780 3.924114 TCTACATACACCCACCAATGG 57.076 47.619 0.00 0.00 46.81 3.16
1261 1782 7.633018 AATCTATCTACATACACCCACCAAT 57.367 36.000 0.00 0.00 0.00 3.16
1262 1783 8.736097 ATAATCTATCTACATACACCCACCAA 57.264 34.615 0.00 0.00 0.00 3.67
1417 1957 3.131396 CGCGGACTAGGAATTAGCATTT 58.869 45.455 0.00 0.00 32.25 2.32
1418 1958 2.102588 ACGCGGACTAGGAATTAGCATT 59.897 45.455 12.47 0.00 32.25 3.56
1474 2023 3.855255 TGGTGATTGTGTCTCCTCAAA 57.145 42.857 0.00 0.00 40.43 2.69
1648 2236 7.264221 ACTAATTACAGCATCTGTCTTCTGAG 58.736 38.462 2.39 0.00 41.21 3.35
1654 2242 6.238786 CCGAGTACTAATTACAGCATCTGTCT 60.239 42.308 2.39 0.00 41.21 3.41
1844 2619 8.594687 CACTCTGATTAAACCAACAACAAAAAG 58.405 33.333 0.00 0.00 0.00 2.27
1856 2631 4.184629 ACAGATCGCACTCTGATTAAACC 58.815 43.478 16.99 0.00 44.48 3.27
1993 2777 8.729756 CAATTTACAACAACTCATATGGTCTGA 58.270 33.333 2.13 0.00 0.00 3.27
2040 2824 8.125978 TCCATGATTCTAACAAAAGCAAGAAT 57.874 30.769 0.00 0.00 40.47 2.40
2060 2844 9.434420 GTCCATTATCTTCTCTTCTTATCCATG 57.566 37.037 0.00 0.00 0.00 3.66
2156 2940 8.407064 AGGAATATAATAGAAGACGAATAGGCG 58.593 37.037 0.00 0.00 37.29 5.52
2534 3500 7.113965 GCACTGAATGATTTTGAAGTAACACTG 59.886 37.037 0.00 0.00 0.00 3.66
2617 3586 5.305386 TCCAAGAAATCTGAGTCAGTCTTCA 59.695 40.000 25.37 13.52 31.09 3.02
2668 3637 1.538512 CTGTTGATGCAGTTGACCCAG 59.461 52.381 0.00 0.00 0.00 4.45
2780 3750 8.793592 GTCAACATTAACTGGGATAAAAGTTCT 58.206 33.333 0.00 0.00 37.74 3.01
2883 3858 8.859156 CAAATTTAAAATAACACACCAGGATCG 58.141 33.333 0.00 0.00 0.00 3.69
2950 3925 2.658548 CTCCAAACCAAAGGAGGCC 58.341 57.895 0.00 0.00 46.11 5.19
2954 3929 4.444164 GCAAAATTCCTCCAAACCAAAGGA 60.444 41.667 0.00 0.00 37.42 3.36
2955 3930 3.814842 GCAAAATTCCTCCAAACCAAAGG 59.185 43.478 0.00 0.00 0.00 3.11
2956 3931 4.450053 TGCAAAATTCCTCCAAACCAAAG 58.550 39.130 0.00 0.00 0.00 2.77
2957 3932 4.450053 CTGCAAAATTCCTCCAAACCAAA 58.550 39.130 0.00 0.00 0.00 3.28
2958 3933 3.181456 CCTGCAAAATTCCTCCAAACCAA 60.181 43.478 0.00 0.00 0.00 3.67
2959 3934 2.368221 CCTGCAAAATTCCTCCAAACCA 59.632 45.455 0.00 0.00 0.00 3.67
2960 3935 2.632512 TCCTGCAAAATTCCTCCAAACC 59.367 45.455 0.00 0.00 0.00 3.27
2961 3936 4.541973 ATCCTGCAAAATTCCTCCAAAC 57.458 40.909 0.00 0.00 0.00 2.93
2962 3937 5.565455 AAATCCTGCAAAATTCCTCCAAA 57.435 34.783 0.00 0.00 0.00 3.28
2963 3938 5.071519 TGAAAATCCTGCAAAATTCCTCCAA 59.928 36.000 0.00 0.00 0.00 3.53
2964 3939 4.592351 TGAAAATCCTGCAAAATTCCTCCA 59.408 37.500 0.00 0.00 0.00 3.86
2965 3940 5.151297 TGAAAATCCTGCAAAATTCCTCC 57.849 39.130 0.00 0.00 0.00 4.30
2966 3941 6.982724 CCTATGAAAATCCTGCAAAATTCCTC 59.017 38.462 0.00 0.00 0.00 3.71
2967 3942 6.669154 TCCTATGAAAATCCTGCAAAATTCCT 59.331 34.615 0.00 0.00 0.00 3.36
2968 3943 6.877236 TCCTATGAAAATCCTGCAAAATTCC 58.123 36.000 0.00 0.00 0.00 3.01
2969 3944 9.688592 CTATCCTATGAAAATCCTGCAAAATTC 57.311 33.333 0.00 0.00 0.00 2.17
2970 3945 8.645110 CCTATCCTATGAAAATCCTGCAAAATT 58.355 33.333 0.00 0.00 0.00 1.82
2971 3946 8.006564 TCCTATCCTATGAAAATCCTGCAAAAT 58.993 33.333 0.00 0.00 0.00 1.82
2972 3947 7.353525 TCCTATCCTATGAAAATCCTGCAAAA 58.646 34.615 0.00 0.00 0.00 2.44
2973 3948 6.910191 TCCTATCCTATGAAAATCCTGCAAA 58.090 36.000 0.00 0.00 0.00 3.68
2974 3949 6.514012 TCCTATCCTATGAAAATCCTGCAA 57.486 37.500 0.00 0.00 0.00 4.08
2975 3950 6.708885 ATCCTATCCTATGAAAATCCTGCA 57.291 37.500 0.00 0.00 0.00 4.41
2976 3951 7.887495 AGAAATCCTATCCTATGAAAATCCTGC 59.113 37.037 0.00 0.00 0.00 4.85
3007 3982 6.155136 CCAAAGAGCTCTGAAGGAATTTTTC 58.845 40.000 19.06 0.00 0.00 2.29
3008 3983 5.600069 ACCAAAGAGCTCTGAAGGAATTTTT 59.400 36.000 27.00 9.59 0.00 1.94
3009 3984 5.143369 ACCAAAGAGCTCTGAAGGAATTTT 58.857 37.500 27.00 10.23 0.00 1.82
3010 3985 4.734266 ACCAAAGAGCTCTGAAGGAATTT 58.266 39.130 27.00 10.86 0.00 1.82
3011 3986 4.379302 ACCAAAGAGCTCTGAAGGAATT 57.621 40.909 27.00 11.51 0.00 2.17
3012 3987 4.379302 AACCAAAGAGCTCTGAAGGAAT 57.621 40.909 27.00 16.39 0.00 3.01
3013 3988 3.864789 AACCAAAGAGCTCTGAAGGAA 57.135 42.857 27.00 0.00 0.00 3.36
3014 3989 3.117888 ACAAACCAAAGAGCTCTGAAGGA 60.118 43.478 27.00 0.00 0.00 3.36
3015 3990 3.217626 ACAAACCAAAGAGCTCTGAAGG 58.782 45.455 19.06 20.58 0.00 3.46
3016 3991 4.453819 CCTACAAACCAAAGAGCTCTGAAG 59.546 45.833 19.06 11.19 0.00 3.02
3017 3992 4.102524 TCCTACAAACCAAAGAGCTCTGAA 59.897 41.667 19.06 0.00 0.00 3.02
3018 3993 3.646162 TCCTACAAACCAAAGAGCTCTGA 59.354 43.478 19.06 2.19 0.00 3.27
3019 3994 4.008074 TCCTACAAACCAAAGAGCTCTG 57.992 45.455 19.06 7.57 0.00 3.35
3020 3995 4.706842 TTCCTACAAACCAAAGAGCTCT 57.293 40.909 11.45 11.45 0.00 4.09
3021 3996 5.003804 TCATTCCTACAAACCAAAGAGCTC 58.996 41.667 5.27 5.27 0.00 4.09
3022 3997 4.985538 TCATTCCTACAAACCAAAGAGCT 58.014 39.130 0.00 0.00 0.00 4.09
3023 3998 5.705609 TTCATTCCTACAAACCAAAGAGC 57.294 39.130 0.00 0.00 0.00 4.09
3024 3999 7.177392 AGGATTTCATTCCTACAAACCAAAGAG 59.823 37.037 0.00 0.00 44.50 2.85
3025 4000 7.010160 AGGATTTCATTCCTACAAACCAAAGA 58.990 34.615 0.00 0.00 44.50 2.52
3026 4001 7.232118 AGGATTTCATTCCTACAAACCAAAG 57.768 36.000 0.00 0.00 44.50 2.77
3063 4038 7.056635 TGAAATGTGGAGGATAGGAAGAATTC 58.943 38.462 0.00 0.00 46.67 2.17
3064 4039 6.973642 TGAAATGTGGAGGATAGGAAGAATT 58.026 36.000 0.00 0.00 0.00 2.17
3065 4040 6.581388 TGAAATGTGGAGGATAGGAAGAAT 57.419 37.500 0.00 0.00 0.00 2.40
3066 4041 6.581388 ATGAAATGTGGAGGATAGGAAGAA 57.419 37.500 0.00 0.00 0.00 2.52
3067 4042 6.270927 CCTATGAAATGTGGAGGATAGGAAGA 59.729 42.308 0.00 0.00 36.16 2.87
3068 4043 6.270927 TCCTATGAAATGTGGAGGATAGGAAG 59.729 42.308 0.00 0.00 38.86 3.46
3069 4044 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
3070 4045 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
3071 4046 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
3072 4047 7.775093 TGTTTTCCTATGAAATGTGGAGGATAG 59.225 37.037 0.00 0.00 40.08 2.08
3073 4048 7.638444 TGTTTTCCTATGAAATGTGGAGGATA 58.362 34.615 0.00 0.00 40.08 2.59
3074 4049 6.493166 TGTTTTCCTATGAAATGTGGAGGAT 58.507 36.000 0.00 0.00 40.08 3.24
3075 4050 5.886609 TGTTTTCCTATGAAATGTGGAGGA 58.113 37.500 0.00 0.00 40.08 3.71
3076 4051 6.588719 TTGTTTTCCTATGAAATGTGGAGG 57.411 37.500 0.00 0.00 40.08 4.30
3077 4052 7.432869 TGTTTGTTTTCCTATGAAATGTGGAG 58.567 34.615 0.00 0.00 40.08 3.86
3078 4053 7.353414 TGTTTGTTTTCCTATGAAATGTGGA 57.647 32.000 0.00 0.00 40.08 4.02
3079 4054 8.606040 AATGTTTGTTTTCCTATGAAATGTGG 57.394 30.769 0.00 0.00 40.08 4.17
3080 4055 9.866936 CAAATGTTTGTTTTCCTATGAAATGTG 57.133 29.630 0.00 0.00 40.08 3.21
3081 4056 8.558700 GCAAATGTTTGTTTTCCTATGAAATGT 58.441 29.630 7.26 0.00 38.13 2.71
3082 4057 8.016801 GGCAAATGTTTGTTTTCCTATGAAATG 58.983 33.333 7.26 0.00 38.13 2.32
3083 4058 7.938490 AGGCAAATGTTTGTTTTCCTATGAAAT 59.062 29.630 7.26 0.00 38.13 2.17
3084 4059 7.278875 AGGCAAATGTTTGTTTTCCTATGAAA 58.721 30.769 7.26 0.00 40.24 2.69
3085 4060 6.825610 AGGCAAATGTTTGTTTTCCTATGAA 58.174 32.000 7.26 0.00 40.24 2.57
3086 4061 6.418057 AGGCAAATGTTTGTTTTCCTATGA 57.582 33.333 7.26 0.00 40.24 2.15
3087 4062 7.542130 GTCTAGGCAAATGTTTGTTTTCCTATG 59.458 37.037 7.26 4.68 40.24 2.23
3088 4063 7.451566 AGTCTAGGCAAATGTTTGTTTTCCTAT 59.548 33.333 0.00 0.00 40.24 2.57
3089 4064 6.775629 AGTCTAGGCAAATGTTTGTTTTCCTA 59.224 34.615 0.00 7.92 40.24 2.94
3090 4065 5.598417 AGTCTAGGCAAATGTTTGTTTTCCT 59.402 36.000 0.00 7.28 40.24 3.36
3091 4066 5.842907 AGTCTAGGCAAATGTTTGTTTTCC 58.157 37.500 0.00 0.65 40.24 3.13
3092 4067 6.503524 TGAGTCTAGGCAAATGTTTGTTTTC 58.496 36.000 0.00 0.00 40.24 2.29
3093 4068 6.463995 TGAGTCTAGGCAAATGTTTGTTTT 57.536 33.333 0.00 0.00 40.24 2.43
3094 4069 6.463995 TTGAGTCTAGGCAAATGTTTGTTT 57.536 33.333 0.00 0.00 40.24 2.83
3095 4070 6.449698 CATTGAGTCTAGGCAAATGTTTGTT 58.550 36.000 12.33 0.05 40.24 2.83
3096 4071 5.047802 CCATTGAGTCTAGGCAAATGTTTGT 60.048 40.000 16.85 0.00 40.24 2.83
3097 4072 5.183713 TCCATTGAGTCTAGGCAAATGTTTG 59.816 40.000 16.85 1.19 41.03 2.93
3098 4073 5.324409 TCCATTGAGTCTAGGCAAATGTTT 58.676 37.500 16.85 0.00 0.00 2.83
3099 4074 4.922206 TCCATTGAGTCTAGGCAAATGTT 58.078 39.130 16.85 0.00 0.00 2.71
3100 4075 4.574674 TCCATTGAGTCTAGGCAAATGT 57.425 40.909 16.85 0.00 0.00 2.71
3101 4076 5.902613 TTTCCATTGAGTCTAGGCAAATG 57.097 39.130 13.20 13.20 0.00 2.32
3102 4077 6.916360 TTTTTCCATTGAGTCTAGGCAAAT 57.084 33.333 0.00 0.00 0.00 2.32
3123 4098 7.310609 CCCTTTGATTCACACCATAGGATTTTT 60.311 37.037 0.00 0.00 34.69 1.94
3124 4099 6.155049 CCCTTTGATTCACACCATAGGATTTT 59.845 38.462 0.00 0.00 34.69 1.82
3125 4100 5.658190 CCCTTTGATTCACACCATAGGATTT 59.342 40.000 0.00 0.00 34.69 2.17
3126 4101 5.203528 CCCTTTGATTCACACCATAGGATT 58.796 41.667 0.00 0.00 34.69 3.01
3127 4102 4.796606 CCCTTTGATTCACACCATAGGAT 58.203 43.478 0.00 0.00 34.69 3.24
3128 4103 3.624707 GCCCTTTGATTCACACCATAGGA 60.625 47.826 0.00 0.00 34.69 2.94
3129 4104 2.689983 GCCCTTTGATTCACACCATAGG 59.310 50.000 0.00 0.00 33.22 2.57
3130 4105 3.355378 TGCCCTTTGATTCACACCATAG 58.645 45.455 0.00 0.00 0.00 2.23
3131 4106 3.448093 TGCCCTTTGATTCACACCATA 57.552 42.857 0.00 0.00 0.00 2.74
3132 4107 2.307496 TGCCCTTTGATTCACACCAT 57.693 45.000 0.00 0.00 0.00 3.55
3133 4108 2.170166 GATGCCCTTTGATTCACACCA 58.830 47.619 0.00 0.00 0.00 4.17
3134 4109 2.424956 GAGATGCCCTTTGATTCACACC 59.575 50.000 0.00 0.00 0.00 4.16
3135 4110 3.350833 AGAGATGCCCTTTGATTCACAC 58.649 45.455 0.00 0.00 0.00 3.82
3136 4111 3.726557 AGAGATGCCCTTTGATTCACA 57.273 42.857 0.00 0.00 0.00 3.58
3137 4112 5.397142 AAAAGAGATGCCCTTTGATTCAC 57.603 39.130 0.00 0.00 34.42 3.18
3138 4113 5.776716 AGAAAAAGAGATGCCCTTTGATTCA 59.223 36.000 0.00 0.00 34.42 2.57
3139 4114 6.278172 AGAAAAAGAGATGCCCTTTGATTC 57.722 37.500 0.00 0.00 34.42 2.52
3140 4115 7.968014 ATAGAAAAAGAGATGCCCTTTGATT 57.032 32.000 0.00 0.00 34.42 2.57
3141 4116 7.069208 GGAATAGAAAAAGAGATGCCCTTTGAT 59.931 37.037 0.00 0.00 34.42 2.57
3142 4117 6.378280 GGAATAGAAAAAGAGATGCCCTTTGA 59.622 38.462 0.00 0.00 34.42 2.69
3143 4118 6.379417 AGGAATAGAAAAAGAGATGCCCTTTG 59.621 38.462 0.00 0.00 34.42 2.77
3144 4119 6.497640 AGGAATAGAAAAAGAGATGCCCTTT 58.502 36.000 0.00 0.00 35.55 3.11
3145 4120 6.084749 AGGAATAGAAAAAGAGATGCCCTT 57.915 37.500 0.00 0.00 0.00 3.95
3146 4121 5.723860 AGGAATAGAAAAAGAGATGCCCT 57.276 39.130 0.00 0.00 0.00 5.19
3147 4122 6.072230 GCATAGGAATAGAAAAAGAGATGCCC 60.072 42.308 0.00 0.00 31.89 5.36
3148 4123 6.488006 TGCATAGGAATAGAAAAAGAGATGCC 59.512 38.462 0.00 0.00 36.09 4.40
3149 4124 7.502120 TGCATAGGAATAGAAAAAGAGATGC 57.498 36.000 0.00 0.00 37.16 3.91
3171 4146 4.517832 TGACATGCATCTCAAATCCTATGC 59.482 41.667 1.73 0.00 43.92 3.14
3172 4147 6.819397 ATGACATGCATCTCAAATCCTATG 57.181 37.500 8.81 0.00 28.85 2.23
3185 4160 6.430308 GTCATAGGAAATGAGATGACATGCAT 59.570 38.462 8.58 0.00 44.91 3.96
3186 4161 5.761726 GTCATAGGAAATGAGATGACATGCA 59.238 40.000 8.58 0.00 44.91 3.96
3187 4162 5.996513 AGTCATAGGAAATGAGATGACATGC 59.003 40.000 14.37 0.00 46.94 4.06
3188 4163 8.447924 AAAGTCATAGGAAATGAGATGACATG 57.552 34.615 14.37 0.00 46.94 3.21
3189 4164 7.718753 GGAAAGTCATAGGAAATGAGATGACAT 59.281 37.037 14.37 1.96 46.94 3.06
3190 4165 7.050377 GGAAAGTCATAGGAAATGAGATGACA 58.950 38.462 14.37 0.00 46.94 3.58
3191 4166 7.278875 AGGAAAGTCATAGGAAATGAGATGAC 58.721 38.462 5.86 5.86 45.57 3.06
3192 4167 7.443302 AGGAAAGTCATAGGAAATGAGATGA 57.557 36.000 0.00 0.00 0.00 2.92
3193 4168 9.790344 AATAGGAAAGTCATAGGAAATGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
3195 4170 8.432805 GGAATAGGAAAGTCATAGGAAATGAGA 58.567 37.037 0.00 0.00 0.00 3.27
3196 4171 8.435982 AGGAATAGGAAAGTCATAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
3197 4172 8.337118 AGGAATAGGAAAGTCATAGGAAATGA 57.663 34.615 0.00 0.00 0.00 2.57
3200 4175 9.447279 TCATAGGAATAGGAAAGTCATAGGAAA 57.553 33.333 0.00 0.00 0.00 3.13
3201 4176 9.621239 ATCATAGGAATAGGAAAGTCATAGGAA 57.379 33.333 0.00 0.00 0.00 3.36
3202 4177 9.621239 AATCATAGGAATAGGAAAGTCATAGGA 57.379 33.333 0.00 0.00 0.00 2.94
3206 4181 9.579932 GGAAAATCATAGGAATAGGAAAGTCAT 57.420 33.333 0.00 0.00 0.00 3.06
3207 4182 8.556589 TGGAAAATCATAGGAATAGGAAAGTCA 58.443 33.333 0.00 0.00 0.00 3.41
3208 4183 8.980481 TGGAAAATCATAGGAATAGGAAAGTC 57.020 34.615 0.00 0.00 0.00 3.01
3209 4184 9.942526 ATTGGAAAATCATAGGAATAGGAAAGT 57.057 29.630 0.00 0.00 0.00 2.66
3211 4186 9.367160 GGATTGGAAAATCATAGGAATAGGAAA 57.633 33.333 1.28 0.00 0.00 3.13
3212 4187 8.736675 AGGATTGGAAAATCATAGGAATAGGAA 58.263 33.333 1.28 0.00 0.00 3.36
3213 4188 8.293027 AGGATTGGAAAATCATAGGAATAGGA 57.707 34.615 1.28 0.00 0.00 2.94
3218 4193 9.354673 GTTCATAGGATTGGAAAATCATAGGAA 57.645 33.333 13.10 13.10 41.07 3.36
3219 4194 7.944554 GGTTCATAGGATTGGAAAATCATAGGA 59.055 37.037 4.08 4.08 35.40 2.94
3220 4195 7.725397 TGGTTCATAGGATTGGAAAATCATAGG 59.275 37.037 1.28 0.58 30.31 2.57
3221 4196 8.696043 TGGTTCATAGGATTGGAAAATCATAG 57.304 34.615 1.28 0.00 30.31 2.23
3222 4197 9.486123 TTTGGTTCATAGGATTGGAAAATCATA 57.514 29.630 1.28 0.00 31.19 2.15
3223 4198 7.976414 TTGGTTCATAGGATTGGAAAATCAT 57.024 32.000 1.28 0.00 0.00 2.45
3224 4199 7.093377 CCTTTGGTTCATAGGATTGGAAAATCA 60.093 37.037 0.00 0.00 35.14 2.57
3225 4200 7.124147 TCCTTTGGTTCATAGGATTGGAAAATC 59.876 37.037 3.54 0.00 36.84 2.17
3226 4201 6.959366 TCCTTTGGTTCATAGGATTGGAAAAT 59.041 34.615 3.54 0.00 36.84 1.82
3227 4202 6.318913 TCCTTTGGTTCATAGGATTGGAAAA 58.681 36.000 3.54 0.00 36.84 2.29
3228 4203 5.898120 TCCTTTGGTTCATAGGATTGGAAA 58.102 37.500 3.54 0.00 36.84 3.13
3229 4204 5.509498 CTCCTTTGGTTCATAGGATTGGAA 58.491 41.667 7.38 0.00 39.94 3.53
3230 4205 4.079787 CCTCCTTTGGTTCATAGGATTGGA 60.080 45.833 7.38 0.00 39.94 3.53
3231 4206 4.210331 CCTCCTTTGGTTCATAGGATTGG 58.790 47.826 7.38 3.85 39.94 3.16
3232 4207 3.633986 GCCTCCTTTGGTTCATAGGATTG 59.366 47.826 7.38 4.49 39.94 2.67
3233 4208 3.373110 GGCCTCCTTTGGTTCATAGGATT 60.373 47.826 0.00 0.00 39.94 3.01
3234 4209 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
3235 4210 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
3236 4211 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
3237 4212 4.503714 TTAGGCCTCCTTTGGTTCATAG 57.496 45.455 9.68 0.00 34.61 2.23
3238 4213 4.938575 TTTAGGCCTCCTTTGGTTCATA 57.061 40.909 9.68 0.00 34.61 2.15
3239 4214 3.825908 TTTAGGCCTCCTTTGGTTCAT 57.174 42.857 9.68 0.00 34.61 2.57
3240 4215 3.181423 ACATTTAGGCCTCCTTTGGTTCA 60.181 43.478 9.68 0.00 34.61 3.18
3241 4216 3.431415 ACATTTAGGCCTCCTTTGGTTC 58.569 45.455 9.68 0.00 34.61 3.62
3242 4217 3.542969 ACATTTAGGCCTCCTTTGGTT 57.457 42.857 9.68 0.00 34.61 3.67
3243 4218 3.542969 AACATTTAGGCCTCCTTTGGT 57.457 42.857 9.68 0.00 34.61 3.67
3244 4219 4.890158 AAAACATTTAGGCCTCCTTTGG 57.110 40.909 9.68 0.00 34.61 3.28
3345 4320 4.594123 TGAAACACGATCTGTCCAGTAA 57.406 40.909 0.00 0.00 30.29 2.24
3378 4353 5.836024 TTATCAACTACCAGTTTCCACCT 57.164 39.130 0.00 0.00 36.03 4.00
3395 4370 7.338196 ACAAACACCGGATATTTCACATTATCA 59.662 33.333 9.46 0.00 0.00 2.15
3469 4446 2.296831 TCGGTCTTCGTGTTTCACAA 57.703 45.000 1.00 0.00 40.32 3.33
3472 4449 3.256383 TCCTATTCGGTCTTCGTGTTTCA 59.744 43.478 0.00 0.00 40.32 2.69
4930 5941 2.044555 CAGCGACCACCGAGACCTA 61.045 63.158 0.00 0.00 41.76 3.08
5149 6160 2.260844 TTCACTCAGCACCTTGAAGG 57.739 50.000 10.24 10.24 42.49 3.46
5497 8427 9.153721 CACAAATGCATTATCCAACAAAATACT 57.846 29.630 13.39 0.00 0.00 2.12
5498 8428 8.934825 ACACAAATGCATTATCCAACAAAATAC 58.065 29.630 13.39 0.00 0.00 1.89
5500 8430 7.982761 ACACAAATGCATTATCCAACAAAAT 57.017 28.000 13.39 0.00 0.00 1.82
5502 8432 7.665690 ACTACACAAATGCATTATCCAACAAA 58.334 30.769 13.39 0.00 0.00 2.83
5503 8433 7.225784 ACTACACAAATGCATTATCCAACAA 57.774 32.000 13.39 0.00 0.00 2.83
5504 8434 6.832520 ACTACACAAATGCATTATCCAACA 57.167 33.333 13.39 0.00 0.00 3.33
5505 8435 7.985476 ACTACTACACAAATGCATTATCCAAC 58.015 34.615 13.39 0.00 0.00 3.77
5506 8436 8.458052 CAACTACTACACAAATGCATTATCCAA 58.542 33.333 13.39 0.00 0.00 3.53
5507 8437 7.415095 GCAACTACTACACAAATGCATTATCCA 60.415 37.037 13.39 0.00 32.80 3.41
5508 8438 6.912591 GCAACTACTACACAAATGCATTATCC 59.087 38.462 13.39 0.00 32.80 2.59
5509 8439 7.697691 AGCAACTACTACACAAATGCATTATC 58.302 34.615 13.39 0.00 34.89 1.75
5510 8440 7.630242 AGCAACTACTACACAAATGCATTAT 57.370 32.000 13.39 0.84 34.89 1.28
5521 10585 6.402875 CCCCGAAATTTAAGCAACTACTACAC 60.403 42.308 0.00 0.00 0.00 2.90
5525 10589 4.659115 ACCCCGAAATTTAAGCAACTACT 58.341 39.130 0.00 0.00 0.00 2.57
5678 13065 3.008266 TGGTTTGTGATCATCAGAGAGCA 59.992 43.478 3.34 3.34 31.63 4.26
5971 13358 6.146673 AGTCGGTATAAACAACAGCAAGTTAC 59.853 38.462 0.00 0.00 38.74 2.50
6317 13709 3.839490 TGAAATTTGGTACTCCCTCCGTA 59.161 43.478 0.00 0.00 0.00 4.02
6486 15842 7.095229 GCACTAGACATGTCAAGTTCAATACAA 60.095 37.037 27.02 0.00 0.00 2.41
6708 16068 3.404899 AGCACAAATTTGGCAAGGAATG 58.595 40.909 24.29 13.05 0.00 2.67
6930 16290 2.728397 CATGGCAGGTGATCCCATG 58.272 57.895 11.92 11.92 46.89 3.66
6987 20207 6.875195 CCAAGCACAACAAATGAAGGAATATT 59.125 34.615 0.00 0.00 0.00 1.28
7049 20269 4.903149 TCAACCCCCTTCAATCCTCTATA 58.097 43.478 0.00 0.00 0.00 1.31
7051 20271 3.115390 CTCAACCCCCTTCAATCCTCTA 58.885 50.000 0.00 0.00 0.00 2.43
7052 20272 1.918957 CTCAACCCCCTTCAATCCTCT 59.081 52.381 0.00 0.00 0.00 3.69
7053 20273 1.064389 CCTCAACCCCCTTCAATCCTC 60.064 57.143 0.00 0.00 0.00 3.71
7054 20274 1.002857 CCTCAACCCCCTTCAATCCT 58.997 55.000 0.00 0.00 0.00 3.24
7055 20275 0.999712 TCCTCAACCCCCTTCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
7056 20276 1.064389 CCTCCTCAACCCCCTTCAATC 60.064 57.143 0.00 0.00 0.00 2.67
7057 20277 1.002857 CCTCCTCAACCCCCTTCAAT 58.997 55.000 0.00 0.00 0.00 2.57
7058 20278 0.104144 TCCTCCTCAACCCCCTTCAA 60.104 55.000 0.00 0.00 0.00 2.69
7059 20279 0.121197 ATCCTCCTCAACCCCCTTCA 59.879 55.000 0.00 0.00 0.00 3.02
7113 20333 3.065371 CGCTGGTTTATTGAGGATTGGAC 59.935 47.826 0.00 0.00 0.00 4.02
7124 20344 4.546829 TTGTACTCTCCGCTGGTTTATT 57.453 40.909 0.00 0.00 0.00 1.40
7149 20369 4.926238 AGCTACTGTCACAAGAATTTCTCG 59.074 41.667 0.00 0.00 0.00 4.04
7170 20390 3.875727 GGTTAAACCTATCCCGAAGAAGC 59.124 47.826 0.00 0.00 34.73 3.86
7177 20397 3.249986 TGTTCGGTTAAACCTATCCCG 57.750 47.619 0.00 0.00 35.66 5.14
7179 20399 5.122869 GGTCTTTGTTCGGTTAAACCTATCC 59.877 44.000 0.00 0.00 35.66 2.59
7190 20410 0.179067 TTCGCTGGTCTTTGTTCGGT 60.179 50.000 0.00 0.00 0.00 4.69
7191 20411 0.512952 CTTCGCTGGTCTTTGTTCGG 59.487 55.000 0.00 0.00 0.00 4.30
7192 20412 0.110644 GCTTCGCTGGTCTTTGTTCG 60.111 55.000 0.00 0.00 0.00 3.95
7193 20413 1.230324 AGCTTCGCTGGTCTTTGTTC 58.770 50.000 0.00 0.00 37.57 3.18
7194 20414 3.403936 AGCTTCGCTGGTCTTTGTT 57.596 47.368 0.00 0.00 37.57 2.83
7204 20424 1.479730 TCTCATGATGACAGCTTCGCT 59.520 47.619 0.00 0.00 40.77 4.93
7205 20425 1.931906 TCTCATGATGACAGCTTCGC 58.068 50.000 0.00 0.00 0.00 4.70
7206 20426 2.606725 GGTTCTCATGATGACAGCTTCG 59.393 50.000 0.00 0.00 0.00 3.79
7207 20427 3.373439 GTGGTTCTCATGATGACAGCTTC 59.627 47.826 0.00 0.00 0.00 3.86
7208 20428 3.008813 AGTGGTTCTCATGATGACAGCTT 59.991 43.478 0.00 0.00 0.00 3.74
7209 20429 2.570752 AGTGGTTCTCATGATGACAGCT 59.429 45.455 0.00 0.00 0.00 4.24
7210 20430 2.676839 CAGTGGTTCTCATGATGACAGC 59.323 50.000 0.00 0.00 0.00 4.40
7211 20431 3.931468 GACAGTGGTTCTCATGATGACAG 59.069 47.826 0.00 0.00 0.00 3.51
7212 20432 3.324556 TGACAGTGGTTCTCATGATGACA 59.675 43.478 0.00 0.00 0.00 3.58
7213 20433 3.930336 TGACAGTGGTTCTCATGATGAC 58.070 45.455 0.00 0.00 0.00 3.06
7214 20434 4.284234 TCTTGACAGTGGTTCTCATGATGA 59.716 41.667 0.00 0.00 0.00 2.92
7215 20435 4.572909 TCTTGACAGTGGTTCTCATGATG 58.427 43.478 0.00 0.00 0.00 3.07
7251 20471 1.013596 CTGTGAAGCAAACACGTCCA 58.986 50.000 0.00 0.00 40.61 4.02
7252 20472 1.295792 TCTGTGAAGCAAACACGTCC 58.704 50.000 0.00 0.00 40.61 4.79
7253 20473 2.349817 CCATCTGTGAAGCAAACACGTC 60.350 50.000 0.00 0.00 40.61 4.34
7254 20474 1.603802 CCATCTGTGAAGCAAACACGT 59.396 47.619 0.00 0.00 40.61 4.49
7255 20475 1.603802 ACCATCTGTGAAGCAAACACG 59.396 47.619 0.00 0.00 40.61 4.49
7256 20476 4.537015 GTTACCATCTGTGAAGCAAACAC 58.463 43.478 0.00 0.00 38.55 3.32
7257 20477 3.249799 CGTTACCATCTGTGAAGCAAACA 59.750 43.478 0.00 0.00 0.00 2.83
7258 20478 3.810373 CGTTACCATCTGTGAAGCAAAC 58.190 45.455 0.00 0.00 0.00 2.93
7259 20479 2.225491 GCGTTACCATCTGTGAAGCAAA 59.775 45.455 0.00 0.00 37.77 3.68
7260 20480 1.804151 GCGTTACCATCTGTGAAGCAA 59.196 47.619 0.00 0.00 37.77 3.91
7261 20481 1.270571 TGCGTTACCATCTGTGAAGCA 60.271 47.619 0.00 0.00 43.57 3.91
7262 20482 1.438651 TGCGTTACCATCTGTGAAGC 58.561 50.000 0.00 0.00 38.21 3.86
7263 20483 3.664276 CGTTTGCGTTACCATCTGTGAAG 60.664 47.826 0.00 0.00 0.00 3.02
7264 20484 2.222213 CGTTTGCGTTACCATCTGTGAA 59.778 45.455 0.00 0.00 0.00 3.18
7265 20485 1.795872 CGTTTGCGTTACCATCTGTGA 59.204 47.619 0.00 0.00 0.00 3.58
7266 20486 2.226262 CGTTTGCGTTACCATCTGTG 57.774 50.000 0.00 0.00 0.00 3.66
7277 20497 5.359716 TATGTTTTCCATAACGTTTGCGT 57.640 34.783 5.91 0.00 43.22 5.24
7278 20498 6.021782 GTGATATGTTTTCCATAACGTTTGCG 60.022 38.462 5.91 0.00 39.43 4.85
7279 20499 6.804295 TGTGATATGTTTTCCATAACGTTTGC 59.196 34.615 5.91 0.00 39.43 3.68
7314 20534 5.503927 ACTGTATTTGTCCATTCTGCATCT 58.496 37.500 0.00 0.00 0.00 2.90
7326 20546 5.668558 AACCAAACGAGACTGTATTTGTC 57.331 39.130 0.00 0.00 31.48 3.18
7346 20566 6.905578 AGTCATTTCCGTTACATGGTTAAAC 58.094 36.000 0.00 0.00 0.00 2.01
7349 20569 5.180271 GGAGTCATTTCCGTTACATGGTTA 58.820 41.667 0.00 0.00 0.00 2.85
7350 20570 4.007659 GGAGTCATTTCCGTTACATGGTT 58.992 43.478 0.00 0.00 0.00 3.67
7351 20571 3.606687 GGAGTCATTTCCGTTACATGGT 58.393 45.455 0.00 0.00 0.00 3.55
7352 20572 2.943033 GGGAGTCATTTCCGTTACATGG 59.057 50.000 0.00 0.00 38.17 3.66
7353 20573 3.873910 AGGGAGTCATTTCCGTTACATG 58.126 45.455 0.00 0.00 38.17 3.21
7354 20574 4.019681 TCAAGGGAGTCATTTCCGTTACAT 60.020 41.667 0.27 0.00 41.92 2.29
7376 20596 0.106708 TGGTTCTGGTCTGCTGTGTC 59.893 55.000 0.00 0.00 0.00 3.67
7386 20609 6.151144 GCTGTTCATTTATTAGTGGTTCTGGT 59.849 38.462 0.00 0.00 0.00 4.00
7397 20620 7.105588 TGCTCTGAGAAGCTGTTCATTTATTA 58.894 34.615 9.28 0.00 42.94 0.98
7414 23534 8.752766 AACAATGTTGATTTTATTGCTCTGAG 57.247 30.769 0.00 0.00 35.71 3.35
7467 23587 7.227910 GTGGGTCAGATTTGTGAAGTACTAAAA 59.772 37.037 0.00 0.00 0.00 1.52
7468 23588 6.708949 GTGGGTCAGATTTGTGAAGTACTAAA 59.291 38.462 0.00 0.00 0.00 1.85
7469 23589 6.228258 GTGGGTCAGATTTGTGAAGTACTAA 58.772 40.000 0.00 0.00 0.00 2.24
7470 23590 5.279809 GGTGGGTCAGATTTGTGAAGTACTA 60.280 44.000 0.00 0.00 0.00 1.82
7584 25691 8.161640 ACTAAAGAGGGAGTAGTAGAGTACTT 57.838 38.462 0.00 0.00 40.14 2.24
7586 25693 7.828717 ACAACTAAAGAGGGAGTAGTAGAGTAC 59.171 40.741 0.00 0.00 0.00 2.73
7594 25701 9.186837 TCAATAGTACAACTAAAGAGGGAGTAG 57.813 37.037 0.00 0.00 33.89 2.57
7623 25730 6.004408 TGATTACATGGATGATTGCGATTG 57.996 37.500 0.00 0.00 0.00 2.67
7637 25744 7.537715 TGCAAACCAGTAAGATTGATTACATG 58.462 34.615 0.00 0.00 37.98 3.21
7640 25747 6.030228 GCTGCAAACCAGTAAGATTGATTAC 58.970 40.000 0.00 0.00 43.71 1.89
7642 25749 4.523943 TGCTGCAAACCAGTAAGATTGATT 59.476 37.500 0.00 0.00 43.71 2.57
7649 25756 3.921119 TTCATGCTGCAAACCAGTAAG 57.079 42.857 6.36 0.00 43.71 2.34
7757 26363 9.757227 GCTCTAGTGATCTAAAACATCTTACAT 57.243 33.333 0.00 0.00 0.00 2.29
7758 26364 8.749354 TGCTCTAGTGATCTAAAACATCTTACA 58.251 33.333 0.00 0.00 0.00 2.41
7759 26365 9.587772 TTGCTCTAGTGATCTAAAACATCTTAC 57.412 33.333 0.00 0.00 0.00 2.34
7761 26367 9.678260 AATTGCTCTAGTGATCTAAAACATCTT 57.322 29.630 0.00 0.00 0.00 2.40
7765 26371 8.758829 TCCTAATTGCTCTAGTGATCTAAAACA 58.241 33.333 0.00 0.00 0.00 2.83
7770 26376 9.988815 GAAATTCCTAATTGCTCTAGTGATCTA 57.011 33.333 0.00 0.00 0.00 1.98
7771 26377 8.713036 AGAAATTCCTAATTGCTCTAGTGATCT 58.287 33.333 0.00 0.00 30.70 2.75
7773 26379 9.771534 GTAGAAATTCCTAATTGCTCTAGTGAT 57.228 33.333 0.00 0.00 37.86 3.06
7774 26380 7.921214 CGTAGAAATTCCTAATTGCTCTAGTGA 59.079 37.037 0.00 0.00 37.86 3.41
7775 26381 7.921214 TCGTAGAAATTCCTAATTGCTCTAGTG 59.079 37.037 0.00 0.00 37.86 2.74
7777 26383 8.873215 TTCGTAGAAATTCCTAATTGCTCTAG 57.127 34.615 0.00 0.00 45.90 2.43
7780 26386 7.852945 CACATTCGTAGAAATTCCTAATTGCTC 59.147 37.037 0.00 0.00 45.90 4.26
7782 26388 7.472543 ACACATTCGTAGAAATTCCTAATTGC 58.527 34.615 0.00 0.00 45.90 3.56
7783 26389 8.122952 GGACACATTCGTAGAAATTCCTAATTG 58.877 37.037 0.00 0.00 45.90 2.32
7784 26390 8.047310 AGGACACATTCGTAGAAATTCCTAATT 58.953 33.333 0.00 0.00 45.90 1.40
7785 26391 7.565680 AGGACACATTCGTAGAAATTCCTAAT 58.434 34.615 0.00 0.00 45.90 1.73
7786 26392 6.942976 AGGACACATTCGTAGAAATTCCTAA 58.057 36.000 0.00 0.00 45.90 2.69
7788 26394 5.422214 AGGACACATTCGTAGAAATTCCT 57.578 39.130 0.00 0.00 45.90 3.36
7789 26395 7.787725 ATTAGGACACATTCGTAGAAATTCC 57.212 36.000 0.00 0.00 45.90 3.01
7799 26405 9.104965 TGGAAAGTATTTATTAGGACACATTCG 57.895 33.333 0.00 0.00 39.27 3.34
7805 26876 9.667107 CTGTTCTGGAAAGTATTTATTAGGACA 57.333 33.333 0.00 0.00 39.27 4.02
7862 26934 1.358152 TCCCACTCCGGTCAAATTCT 58.642 50.000 0.00 0.00 0.00 2.40
7866 26938 1.422024 TCAAATCCCACTCCGGTCAAA 59.578 47.619 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.