Multiple sequence alignment - TraesCS3A01G222500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G222500 chr3A 100.000 4724 0 0 1 4724 416192997 416188274 0.000000e+00 8724.0
1 TraesCS3A01G222500 chr3A 75.699 1288 231 49 1525 2770 416303335 416302088 1.910000e-158 569.0
2 TraesCS3A01G222500 chr3A 84.241 514 74 6 2838 3349 416302043 416301535 1.180000e-135 494.0
3 TraesCS3A01G222500 chr3A 79.358 218 45 0 3491 3708 416301406 416301189 2.280000e-33 154.0
4 TraesCS3A01G222500 chr3D 95.800 3952 116 19 797 4724 313718962 313715037 0.000000e+00 6333.0
5 TraesCS3A01G222500 chr3D 75.680 1287 233 47 1525 2770 313785297 313784050 1.910000e-158 569.0
6 TraesCS3A01G222500 chr3D 83.821 513 78 3 2838 3349 313784005 313783497 2.560000e-132 483.0
7 TraesCS3A01G222500 chr3D 79.817 218 44 0 3491 3708 313783366 313783149 4.890000e-35 159.0
8 TraesCS3A01G222500 chr3B 96.982 2386 67 3 815 3200 405817344 405819724 0.000000e+00 4002.0
9 TraesCS3A01G222500 chr3B 92.177 1061 36 21 3194 4216 405825728 405826779 0.000000e+00 1456.0
10 TraesCS3A01G222500 chr3B 90.625 608 38 10 1 605 405816472 405817063 0.000000e+00 789.0
11 TraesCS3A01G222500 chr3B 75.739 1286 234 45 1525 2770 405788964 405790211 4.100000e-160 575.0
12 TraesCS3A01G222500 chr3B 84.008 519 67 9 2838 3349 405790256 405790765 7.110000e-133 484.0
13 TraesCS3A01G222500 chr3B 90.811 370 11 11 4289 4640 405830551 405830915 1.540000e-129 473.0
14 TraesCS3A01G222500 chr3B 79.817 218 44 0 3491 3708 405790896 405791113 4.890000e-35 159.0
15 TraesCS3A01G222500 chr3B 83.688 141 10 9 660 792 828548738 828548603 2.310000e-23 121.0
16 TraesCS3A01G222500 chr6B 97.710 131 3 0 4204 4334 699597210 699597080 4.760000e-55 226.0
17 TraesCS3A01G222500 chr6B 98.507 67 1 0 3987 4053 254734406 254734472 8.300000e-23 119.0
18 TraesCS3A01G222500 chr6B 98.507 67 1 0 3987 4053 699597274 699597208 8.300000e-23 119.0
19 TraesCS3A01G222500 chr4A 97.710 131 3 0 4204 4334 642324188 642324318 4.760000e-55 226.0
20 TraesCS3A01G222500 chr4A 98.507 67 1 0 3987 4053 642324124 642324190 8.300000e-23 119.0
21 TraesCS3A01G222500 chr2B 97.710 131 3 0 4204 4334 785837803 785837933 4.760000e-55 226.0
22 TraesCS3A01G222500 chr2B 98.507 67 1 0 3987 4053 785837739 785837805 8.300000e-23 119.0
23 TraesCS3A01G222500 chr1B 97.710 131 3 0 4204 4334 365156243 365156373 4.760000e-55 226.0
24 TraesCS3A01G222500 chr1B 96.947 131 4 0 4204 4334 53786392 53786262 2.210000e-53 220.0
25 TraesCS3A01G222500 chr1B 96.947 131 4 0 4204 4334 567127068 567126938 2.210000e-53 220.0
26 TraesCS3A01G222500 chr1B 96.947 131 4 0 4204 4334 647097617 647097747 2.210000e-53 220.0
27 TraesCS3A01G222500 chr1B 98.507 67 1 0 3987 4053 365156179 365156245 8.300000e-23 119.0
28 TraesCS3A01G222500 chr5B 96.947 131 4 0 4204 4334 531923584 531923454 2.210000e-53 220.0
29 TraesCS3A01G222500 chr5B 92.913 127 9 0 2838 2964 655601017 655600891 8.070000e-43 185.0
30 TraesCS3A01G222500 chr5B 98.507 67 1 0 3987 4053 531923648 531923582 8.300000e-23 119.0
31 TraesCS3A01G222500 chr7B 92.913 127 9 0 2838 2964 377732525 377732651 8.070000e-43 185.0
32 TraesCS3A01G222500 chr7A 92.913 127 9 0 2838 2964 646119789 646119663 8.070000e-43 185.0
33 TraesCS3A01G222500 chr2A 91.603 131 11 0 2838 2968 257531910 257531780 1.040000e-41 182.0
34 TraesCS3A01G222500 chr2A 91.000 100 8 1 656 754 717944039 717943940 2.970000e-27 134.0
35 TraesCS3A01G222500 chr6D 91.667 108 7 2 655 760 455101223 455101330 1.060000e-31 148.0
36 TraesCS3A01G222500 chr6D 90.385 104 6 3 659 761 168293754 168293854 2.970000e-27 134.0
37 TraesCS3A01G222500 chr7D 94.565 92 3 2 659 749 426558984 426558894 1.770000e-29 141.0
38 TraesCS3A01G222500 chr7D 94.505 91 3 2 659 748 22964342 22964253 6.370000e-29 139.0
39 TraesCS3A01G222500 chr7D 92.784 97 4 3 652 747 64381203 64381297 2.290000e-28 137.0
40 TraesCS3A01G222500 chr2D 91.089 101 6 3 659 757 386707081 386706982 2.970000e-27 134.0
41 TraesCS3A01G222500 chr2D 88.889 108 9 3 643 749 574413515 574413620 3.840000e-26 130.0
42 TraesCS3A01G222500 chr4B 98.507 67 1 0 3987 4053 230796947 230797013 8.300000e-23 119.0
43 TraesCS3A01G222500 chr5D 90.000 50 5 0 744 793 59782402 59782353 1.100000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G222500 chr3A 416188274 416192997 4723 True 8724.000000 8724 100.000000 1 4724 1 chr3A.!!$R1 4723
1 TraesCS3A01G222500 chr3A 416301189 416303335 2146 True 405.666667 569 79.766000 1525 3708 3 chr3A.!!$R2 2183
2 TraesCS3A01G222500 chr3D 313715037 313718962 3925 True 6333.000000 6333 95.800000 797 4724 1 chr3D.!!$R1 3927
3 TraesCS3A01G222500 chr3D 313783149 313785297 2148 True 403.666667 569 79.772667 1525 3708 3 chr3D.!!$R2 2183
4 TraesCS3A01G222500 chr3B 405816472 405819724 3252 False 2395.500000 4002 93.803500 1 3200 2 chr3B.!!$F2 3199
5 TraesCS3A01G222500 chr3B 405825728 405830915 5187 False 964.500000 1456 91.494000 3194 4640 2 chr3B.!!$F3 1446
6 TraesCS3A01G222500 chr3B 405788964 405791113 2149 False 406.000000 575 79.854667 1525 3708 3 chr3B.!!$F1 2183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 496 0.252467 CCCTCCCTCCTTCTCACACT 60.252 60.000 0.00 0.0 0.00 3.55 F
574 577 0.677288 AGTACGTAGCAACTGCCACA 59.323 50.000 0.00 0.0 43.38 4.17 F
2097 2240 0.729116 AAAGAAGCATGCGATCCACG 59.271 50.000 18.99 0.0 45.66 4.94 F
3244 3389 3.773560 AGGGCAAGGCATTTTACTGTTA 58.226 40.909 0.00 0.0 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2097 2240 0.178068 ATGGTACGACCTGACATGGC 59.822 55.000 0.00 0.0 39.58 4.40 R
2427 2570 3.008266 TCAGATTGCATCAGGACTTCACA 59.992 43.478 0.00 0.0 0.00 3.58 R
3641 3808 0.319405 GGCTGGCACAATTTCAAGCT 59.681 50.000 0.00 0.0 38.70 3.74 R
4660 8594 0.251787 ATCCTTGGTCCAAACCCTGC 60.252 55.000 5.64 0.0 45.83 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.750125 ATACTTTCTTCTCCAATTTGAACAAAC 57.250 29.630 2.03 0.00 32.51 2.93
47 48 8.260114 ACTTTCTTCTCCAATTTGAACAAACAT 58.740 29.630 2.03 0.00 32.51 2.71
49 50 7.345422 TCTTCTCCAATTTGAACAAACATGA 57.655 32.000 0.00 5.80 32.51 3.07
100 101 0.452987 CCTTTGATGCATCCACCACG 59.547 55.000 23.67 6.42 0.00 4.94
101 102 1.452110 CTTTGATGCATCCACCACGA 58.548 50.000 23.67 0.00 0.00 4.35
118 119 3.118592 CCACGAAGCCTCCTTATTTCTCT 60.119 47.826 0.00 0.00 0.00 3.10
139 140 5.368145 TCTTATCCATGCATTCTACACCAC 58.632 41.667 0.00 0.00 0.00 4.16
142 143 2.305635 TCCATGCATTCTACACCACAGT 59.694 45.455 0.00 0.00 0.00 3.55
165 166 4.584743 TGACTGCACTGTTCTTTCTCTAGA 59.415 41.667 0.00 0.00 0.00 2.43
191 192 3.363341 TGCCTCAAAACGAAATTGACC 57.637 42.857 0.00 0.00 33.47 4.02
196 197 2.888414 TCAAAACGAAATTGACCTCCCC 59.112 45.455 0.00 0.00 32.10 4.81
198 199 2.971901 AACGAAATTGACCTCCCCTT 57.028 45.000 0.00 0.00 0.00 3.95
199 200 2.491675 ACGAAATTGACCTCCCCTTC 57.508 50.000 0.00 0.00 0.00 3.46
200 201 1.702957 ACGAAATTGACCTCCCCTTCA 59.297 47.619 0.00 0.00 0.00 3.02
201 202 2.308866 ACGAAATTGACCTCCCCTTCAT 59.691 45.455 0.00 0.00 0.00 2.57
202 203 3.521937 ACGAAATTGACCTCCCCTTCATA 59.478 43.478 0.00 0.00 0.00 2.15
210 211 5.538877 TGACCTCCCCTTCATATACTCTTT 58.461 41.667 0.00 0.00 0.00 2.52
283 284 1.377072 CGTGGATCACCATGCACCA 60.377 57.895 0.00 0.00 46.10 4.17
296 297 6.545666 TCACCATGCACCACCTTATAAAATAG 59.454 38.462 0.00 0.00 0.00 1.73
299 300 7.617723 ACCATGCACCACCTTATAAAATAGAAA 59.382 33.333 0.00 0.00 0.00 2.52
309 310 9.185680 ACCTTATAAAATAGAAATTTCGGCACT 57.814 29.630 12.42 2.10 34.12 4.40
316 317 4.766404 AGAAATTTCGGCACTAACTTGG 57.234 40.909 12.42 0.00 0.00 3.61
324 325 2.611971 CGGCACTAACTTGGTGAAGCTA 60.612 50.000 9.34 0.00 36.89 3.32
326 327 2.742589 GCACTAACTTGGTGAAGCTACC 59.257 50.000 9.34 0.00 41.24 3.18
327 328 2.993899 CACTAACTTGGTGAAGCTACCG 59.006 50.000 0.00 0.00 43.87 4.02
328 329 2.000447 CTAACTTGGTGAAGCTACCGC 59.000 52.381 1.23 0.00 43.87 5.68
391 393 2.065512 GCCGTTTTGCAAGTAAATGGG 58.934 47.619 18.08 9.30 40.46 4.00
453 455 1.145738 AGCACTCCCAAAACTGTCCAT 59.854 47.619 0.00 0.00 0.00 3.41
455 457 2.862541 CACTCCCAAAACTGTCCATCA 58.137 47.619 0.00 0.00 0.00 3.07
494 496 0.252467 CCCTCCCTCCTTCTCACACT 60.252 60.000 0.00 0.00 0.00 3.55
499 501 1.337260 CCCTCCTTCTCACACTGAACG 60.337 57.143 0.00 0.00 0.00 3.95
500 502 1.613925 CCTCCTTCTCACACTGAACGA 59.386 52.381 0.00 0.00 0.00 3.85
501 503 2.035961 CCTCCTTCTCACACTGAACGAA 59.964 50.000 0.00 0.00 0.00 3.85
502 504 3.312828 CTCCTTCTCACACTGAACGAAG 58.687 50.000 0.00 0.00 31.98 3.79
503 505 2.956333 TCCTTCTCACACTGAACGAAGA 59.044 45.455 0.00 0.00 33.19 2.87
504 506 3.574396 TCCTTCTCACACTGAACGAAGAT 59.426 43.478 0.00 0.00 33.19 2.40
505 507 3.923461 CCTTCTCACACTGAACGAAGATC 59.077 47.826 0.00 0.00 33.19 2.75
506 508 4.321601 CCTTCTCACACTGAACGAAGATCT 60.322 45.833 0.00 0.00 33.19 2.75
507 509 4.427096 TCTCACACTGAACGAAGATCTC 57.573 45.455 0.00 0.00 0.00 2.75
508 510 3.821033 TCTCACACTGAACGAAGATCTCA 59.179 43.478 0.00 0.00 0.00 3.27
509 511 4.460731 TCTCACACTGAACGAAGATCTCAT 59.539 41.667 0.00 0.00 0.00 2.90
566 569 7.384115 GCCATGAATATTTAGAGTACGTAGCAA 59.616 37.037 0.00 0.00 0.00 3.91
574 577 0.677288 AGTACGTAGCAACTGCCACA 59.323 50.000 0.00 0.00 43.38 4.17
588 591 4.323417 ACTGCCACATTTTATTCGTCTCA 58.677 39.130 0.00 0.00 0.00 3.27
592 595 5.065090 TGCCACATTTTATTCGTCTCATCTG 59.935 40.000 0.00 0.00 0.00 2.90
594 597 6.403636 GCCACATTTTATTCGTCTCATCTGTT 60.404 38.462 0.00 0.00 0.00 3.16
603 606 5.723672 TCGTCTCATCTGTTTTAACTCCT 57.276 39.130 0.00 0.00 0.00 3.69
604 607 6.829229 TCGTCTCATCTGTTTTAACTCCTA 57.171 37.500 0.00 0.00 0.00 2.94
608 648 7.384115 CGTCTCATCTGTTTTAACTCCTACAAA 59.616 37.037 0.00 0.00 0.00 2.83
609 649 9.220767 GTCTCATCTGTTTTAACTCCTACAAAT 57.779 33.333 0.00 0.00 0.00 2.32
615 655 9.582431 TCTGTTTTAACTCCTACAAATATCTCG 57.418 33.333 0.00 0.00 0.00 4.04
623 663 5.657474 TCCTACAAATATCTCGGTGTCAAC 58.343 41.667 0.00 0.00 0.00 3.18
674 739 1.424302 CTATCTACTCCCTCCGTCCCA 59.576 57.143 0.00 0.00 0.00 4.37
679 744 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
686 751 3.555168 CCTCCGTCCCATAATGTAAGAGC 60.555 52.174 0.00 0.00 0.00 4.09
693 758 6.027749 GTCCCATAATGTAAGAGCGTTTTTG 58.972 40.000 0.00 0.00 0.00 2.44
695 760 6.027749 CCCATAATGTAAGAGCGTTTTTGAC 58.972 40.000 0.00 0.00 0.00 3.18
697 762 6.523201 CCATAATGTAAGAGCGTTTTTGACAC 59.477 38.462 0.00 0.00 0.00 3.67
698 763 5.751243 AATGTAAGAGCGTTTTTGACACT 57.249 34.783 0.00 0.00 0.00 3.55
699 764 6.854496 AATGTAAGAGCGTTTTTGACACTA 57.146 33.333 0.00 0.00 0.00 2.74
700 765 5.646467 TGTAAGAGCGTTTTTGACACTAC 57.354 39.130 0.00 0.00 0.00 2.73
701 766 5.110598 TGTAAGAGCGTTTTTGACACTACA 58.889 37.500 0.00 0.00 0.00 2.74
702 767 4.795970 AAGAGCGTTTTTGACACTACAG 57.204 40.909 0.00 0.00 0.00 2.74
703 768 3.793559 AGAGCGTTTTTGACACTACAGT 58.206 40.909 0.00 0.00 0.00 3.55
705 770 4.982916 AGAGCGTTTTTGACACTACAGTAG 59.017 41.667 6.00 6.00 0.00 2.57
706 771 4.690122 AGCGTTTTTGACACTACAGTAGT 58.310 39.130 7.48 7.48 40.28 2.73
736 838 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
738 840 4.710375 GCTCTTATATTATGGGACGGAGGA 59.290 45.833 0.00 0.00 0.00 3.71
743 845 5.997384 ATATTATGGGACGGAGGAAGTAC 57.003 43.478 0.00 0.00 0.00 2.73
744 846 3.393426 TTATGGGACGGAGGAAGTACT 57.607 47.619 0.00 0.00 0.00 2.73
745 847 4.524802 TTATGGGACGGAGGAAGTACTA 57.475 45.455 0.00 0.00 0.00 1.82
746 848 3.614568 ATGGGACGGAGGAAGTACTAT 57.385 47.619 0.00 0.00 0.00 2.12
747 849 4.736611 ATGGGACGGAGGAAGTACTATA 57.263 45.455 0.00 0.00 0.00 1.31
748 850 4.736611 TGGGACGGAGGAAGTACTATAT 57.263 45.455 0.00 0.00 0.00 0.86
749 851 4.404640 TGGGACGGAGGAAGTACTATATG 58.595 47.826 0.00 0.00 0.00 1.78
750 852 4.105217 TGGGACGGAGGAAGTACTATATGA 59.895 45.833 0.00 0.00 0.00 2.15
751 853 4.458642 GGGACGGAGGAAGTACTATATGAC 59.541 50.000 0.00 0.00 0.00 3.06
752 854 4.153835 GGACGGAGGAAGTACTATATGACG 59.846 50.000 0.00 0.00 0.00 4.35
753 855 4.712476 ACGGAGGAAGTACTATATGACGT 58.288 43.478 0.00 0.62 0.00 4.34
754 856 5.128919 ACGGAGGAAGTACTATATGACGTT 58.871 41.667 0.00 0.00 0.00 3.99
755 857 5.591877 ACGGAGGAAGTACTATATGACGTTT 59.408 40.000 0.00 0.00 0.00 3.60
756 858 6.096001 ACGGAGGAAGTACTATATGACGTTTT 59.904 38.462 0.00 0.00 0.00 2.43
757 859 6.417044 CGGAGGAAGTACTATATGACGTTTTG 59.583 42.308 0.00 0.00 0.00 2.44
758 860 6.700520 GGAGGAAGTACTATATGACGTTTTGG 59.299 42.308 0.00 0.00 0.00 3.28
759 861 7.179076 AGGAAGTACTATATGACGTTTTGGT 57.821 36.000 0.00 0.00 0.00 3.67
760 862 8.297470 AGGAAGTACTATATGACGTTTTGGTA 57.703 34.615 0.00 0.00 0.00 3.25
761 863 8.752187 AGGAAGTACTATATGACGTTTTGGTAA 58.248 33.333 0.00 0.00 0.00 2.85
762 864 9.369904 GGAAGTACTATATGACGTTTTGGTAAA 57.630 33.333 0.00 0.00 0.00 2.01
787 889 4.819630 TGTCATATATTTTGGAACGGAGGC 59.180 41.667 0.00 0.00 0.00 4.70
794 896 2.642154 TTGGAACGGAGGCAGTAAAA 57.358 45.000 0.00 0.00 0.00 1.52
795 897 2.178912 TGGAACGGAGGCAGTAAAAG 57.821 50.000 0.00 0.00 0.00 2.27
812 914 9.569167 GCAGTAAAAGGTAAATATGTTTTCCTC 57.431 33.333 12.45 2.32 42.28 3.71
813 915 9.769093 CAGTAAAAGGTAAATATGTTTTCCTCG 57.231 33.333 12.45 0.00 42.28 4.63
983 1085 1.514228 CCGATATCGACATCGCCGG 60.514 63.158 26.32 4.17 45.07 6.13
1018 1120 2.000701 ATGTCAGGCAATCCCGGGA 61.001 57.895 29.18 29.18 39.21 5.14
1180 1282 0.828022 TATCGATGCGGGGACAAGTT 59.172 50.000 8.54 0.00 0.00 2.66
1296 1398 7.417797 GCATGAAATATTTCCCCAACTGTACAT 60.418 37.037 22.42 5.49 36.36 2.29
1332 1434 6.040878 ACTGTATATTTCTCGTGTGGTAAGC 58.959 40.000 0.00 0.00 0.00 3.09
1357 1461 5.585500 TTTTCAATTCGTACTGTTCCTCG 57.415 39.130 0.00 0.00 0.00 4.63
1365 1469 2.352030 CGTACTGTTCCTCGGCTTTACA 60.352 50.000 0.00 0.00 0.00 2.41
1424 1534 3.620761 TGTAGTTGTAGTTCGTGACACG 58.379 45.455 21.88 21.88 44.19 4.49
1464 1575 6.528537 TCTGTGTTCATCAAATTATTGGGG 57.471 37.500 0.00 0.00 37.15 4.96
1511 1622 8.680039 TTTTTCTGCCATTCTCATTTTGAAAT 57.320 26.923 0.00 0.00 0.00 2.17
1513 1624 8.680039 TTTCTGCCATTCTCATTTTGAAATTT 57.320 26.923 0.00 0.00 0.00 1.82
1933 2058 6.681729 TTGAACTTCTGTCTACATTACCCT 57.318 37.500 0.00 0.00 0.00 4.34
2097 2240 0.729116 AAAGAAGCATGCGATCCACG 59.271 50.000 18.99 0.00 45.66 4.94
2391 2534 4.333926 GCTATTTTCTGCTACTGTTCCAGG 59.666 45.833 7.31 0.00 35.51 4.45
2427 2570 7.939039 TCTTTTTCTCATGTCACCTCTTTGTAT 59.061 33.333 0.00 0.00 0.00 2.29
2428 2571 7.439157 TTTTCTCATGTCACCTCTTTGTATG 57.561 36.000 0.00 0.00 0.00 2.39
2467 2610 9.070149 GCAATCTGATCTTTTGAATGTTTACTC 57.930 33.333 0.00 0.00 0.00 2.59
3244 3389 3.773560 AGGGCAAGGCATTTTACTGTTA 58.226 40.909 0.00 0.00 0.00 2.41
3260 3405 4.729868 ACTGTTAGCTCACTGGGAAAAAT 58.270 39.130 9.40 0.00 0.00 1.82
3405 3570 4.775780 TGTACTCTGGTTAGTTAGGTGCAT 59.224 41.667 0.00 0.00 0.00 3.96
3641 3808 1.552337 GGACTTCAGTCAGAGCATGGA 59.448 52.381 9.18 0.00 46.47 3.41
3806 3973 1.958288 ACCATACTGCTCTCACCCTT 58.042 50.000 0.00 0.00 0.00 3.95
3830 3997 5.240623 TGTGAACAGTAAGTAATTTGCCTGG 59.759 40.000 0.00 0.00 0.00 4.45
3831 3998 5.472137 GTGAACAGTAAGTAATTTGCCTGGA 59.528 40.000 0.00 0.00 0.00 3.86
3832 3999 5.705441 TGAACAGTAAGTAATTTGCCTGGAG 59.295 40.000 0.00 0.00 0.00 3.86
3833 4000 5.242795 ACAGTAAGTAATTTGCCTGGAGT 57.757 39.130 0.00 0.00 0.00 3.85
3839 4006 5.242795 AGTAATTTGCCTGGAGTTGTACT 57.757 39.130 0.00 0.00 0.00 2.73
3872 4039 5.351465 GCACTCTTTATCAACCGATCTTTCA 59.649 40.000 0.00 0.00 32.73 2.69
3883 4050 8.279970 TCAACCGATCTTTCAATTGACAATAT 57.720 30.769 7.89 4.63 0.00 1.28
3966 4140 6.372937 CCTGAGCTACTTTTAAGAAGGAAAGG 59.627 42.308 0.00 0.00 37.22 3.11
3970 4144 6.272558 AGCTACTTTTAAGAAGGAAAGGGAGA 59.727 38.462 0.00 0.00 37.22 3.71
3971 4145 6.596106 GCTACTTTTAAGAAGGAAAGGGAGAG 59.404 42.308 0.00 0.00 37.22 3.20
3972 4146 5.882040 ACTTTTAAGAAGGAAAGGGAGAGG 58.118 41.667 0.00 0.00 37.22 3.69
3976 4150 0.391793 GAAGGAAAGGGAGAGGCGTG 60.392 60.000 0.00 0.00 0.00 5.34
3998 4172 6.092748 GTGTGTTTGGCTATTTAGTGAATGG 58.907 40.000 0.00 0.00 0.00 3.16
4113 4316 6.135290 TGTCATTATTCATTGCCAGCTTAC 57.865 37.500 0.00 0.00 0.00 2.34
4131 4334 9.167311 CCAGCTTACACTCATTTCTTTAATACT 57.833 33.333 0.00 0.00 0.00 2.12
4155 4358 3.127425 ACTAGGTTTTGCCTCACTGTC 57.873 47.619 0.00 0.00 46.96 3.51
4158 4361 0.307760 GGTTTTGCCTCACTGTCGTG 59.692 55.000 0.00 0.00 42.59 4.35
4221 4429 5.924825 CCCCGAATTAAGAAATACTAGTCCG 59.075 44.000 0.00 0.00 0.00 4.79
4232 4440 9.813446 AAGAAATACTAGTCCGGTATAGTTTTG 57.187 33.333 21.02 0.28 34.21 2.44
4233 4441 8.419442 AGAAATACTAGTCCGGTATAGTTTTGG 58.581 37.037 21.02 0.00 34.21 3.28
4234 4442 7.666063 AATACTAGTCCGGTATAGTTTTGGT 57.334 36.000 21.02 4.66 34.21 3.67
4236 4444 4.774200 ACTAGTCCGGTATAGTTTTGGTGT 59.226 41.667 13.41 0.00 0.00 4.16
4254 4462 4.744136 GTGTAACTAGGTTTTGCCTCAC 57.256 45.455 0.00 0.00 46.96 3.51
4338 8251 9.962759 CTCAGAAGACAAAAACAAAAATCAAAG 57.037 29.630 0.00 0.00 0.00 2.77
4342 8255 8.846943 AAGACAAAAACAAAAATCAAAGGTCT 57.153 26.923 0.00 0.00 32.59 3.85
4362 8275 6.049790 GGTCTACAAATTTCTAGCGATTCCT 58.950 40.000 0.00 0.00 0.00 3.36
4369 8286 8.739972 ACAAATTTCTAGCGATTCCTTTGTTAT 58.260 29.630 0.00 0.00 33.19 1.89
4370 8287 9.573133 CAAATTTCTAGCGATTCCTTTGTTATT 57.427 29.630 0.00 0.00 0.00 1.40
4376 8293 6.436843 AGCGATTCCTTTGTTATTAACCTG 57.563 37.500 4.17 0.00 0.00 4.00
4434 8352 1.372872 GGCCACCACATTTTCGTGC 60.373 57.895 0.00 0.00 35.47 5.34
4462 8380 5.181433 GGAACAAACAGTTAGGAACAGATCC 59.819 44.000 0.00 0.00 44.39 3.36
4471 8389 2.990066 GGAACAGATCCGATGGAAGT 57.010 50.000 0.00 0.00 38.79 3.01
4684 8618 1.539827 GGTTTGGACCAAGGATTCACG 59.460 52.381 7.07 0.00 45.77 4.35
4697 8631 1.925847 GATTCACGAAGAGAGCAGCTG 59.074 52.381 10.11 10.11 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.750125 GTTTGTTCAAATTGGAGAAGAAAGTAT 57.250 29.630 9.59 0.00 37.58 2.12
40 41 1.133823 TGTGGAGTGCCTCATGTTTGT 60.134 47.619 0.00 0.00 32.98 2.83
47 48 2.171237 CCTTATCATGTGGAGTGCCTCA 59.829 50.000 0.00 0.00 41.50 3.86
49 50 2.200081 ACCTTATCATGTGGAGTGCCT 58.800 47.619 0.00 0.00 34.31 4.75
61 62 3.153919 GGTGTGGCAAAGAACCTTATCA 58.846 45.455 0.00 0.00 0.00 2.15
63 64 3.525800 AGGTGTGGCAAAGAACCTTAT 57.474 42.857 6.61 0.00 40.14 1.73
100 101 6.831976 TGGATAAGAGAAATAAGGAGGCTTC 58.168 40.000 0.00 0.00 0.00 3.86
101 102 6.831664 TGGATAAGAGAAATAAGGAGGCTT 57.168 37.500 0.00 0.00 0.00 4.35
118 119 5.109500 TGTGGTGTAGAATGCATGGATAA 57.891 39.130 0.00 0.00 29.67 1.75
142 143 3.827008 AGAGAAAGAACAGTGCAGTCA 57.173 42.857 0.00 0.00 0.00 3.41
165 166 5.814705 TCAATTTCGTTTTGAGGCAAAATGT 59.185 32.000 18.76 3.76 45.23 2.71
191 192 7.256154 GGAAGAGAAAGAGTATATGAAGGGGAG 60.256 44.444 0.00 0.00 0.00 4.30
210 211 7.733773 TGTGGAATATGAAGTAAGGAAGAGA 57.266 36.000 0.00 0.00 0.00 3.10
283 284 9.185680 AGTGCCGAAATTTCTATTTTATAAGGT 57.814 29.630 15.92 0.00 34.16 3.50
296 297 4.023536 TCACCAAGTTAGTGCCGAAATTTC 60.024 41.667 8.20 8.20 35.14 2.17
299 300 3.134574 TCACCAAGTTAGTGCCGAAAT 57.865 42.857 0.00 0.00 35.14 2.17
303 304 0.517316 GCTTCACCAAGTTAGTGCCG 59.483 55.000 0.00 0.00 35.14 5.69
309 310 2.088950 GCGGTAGCTTCACCAAGTTA 57.911 50.000 6.48 0.00 38.61 2.24
324 325 1.536943 GGGAGACTTGACAGAGCGGT 61.537 60.000 0.00 0.00 0.00 5.68
326 327 1.153939 CGGGAGACTTGACAGAGCG 60.154 63.158 0.00 0.00 0.00 5.03
327 328 0.389166 CACGGGAGACTTGACAGAGC 60.389 60.000 0.00 0.00 0.00 4.09
328 329 0.244994 CCACGGGAGACTTGACAGAG 59.755 60.000 0.00 0.00 0.00 3.35
329 330 0.178973 TCCACGGGAGACTTGACAGA 60.179 55.000 0.00 0.00 0.00 3.41
405 407 9.325248 TGGAGGATTGTGATCTACATGATATTA 57.675 33.333 0.00 0.00 39.48 0.98
408 410 7.616528 TTGGAGGATTGTGATCTACATGATA 57.383 36.000 0.00 0.00 39.48 2.15
423 425 1.075601 TGGGAGTGCTTTGGAGGATT 58.924 50.000 0.00 0.00 0.00 3.01
424 426 1.075601 TTGGGAGTGCTTTGGAGGAT 58.924 50.000 0.00 0.00 0.00 3.24
484 486 4.804108 AGATCTTCGTTCAGTGTGAGAAG 58.196 43.478 13.85 13.85 39.52 2.85
494 496 6.536582 GGAGATTTCAATGAGATCTTCGTTCA 59.463 38.462 16.03 0.00 34.36 3.18
499 501 4.213059 GCGGGAGATTTCAATGAGATCTTC 59.787 45.833 16.03 14.15 34.36 2.87
500 502 4.133078 GCGGGAGATTTCAATGAGATCTT 58.867 43.478 16.03 2.43 34.36 2.40
501 503 3.495806 GGCGGGAGATTTCAATGAGATCT 60.496 47.826 15.05 15.05 36.43 2.75
502 504 2.810852 GGCGGGAGATTTCAATGAGATC 59.189 50.000 5.71 5.71 0.00 2.75
503 505 2.173356 TGGCGGGAGATTTCAATGAGAT 59.827 45.455 0.00 0.00 0.00 2.75
504 506 1.559219 TGGCGGGAGATTTCAATGAGA 59.441 47.619 0.00 0.00 0.00 3.27
505 507 2.042686 TGGCGGGAGATTTCAATGAG 57.957 50.000 0.00 0.00 0.00 2.90
506 508 2.734755 ATGGCGGGAGATTTCAATGA 57.265 45.000 0.00 0.00 0.00 2.57
507 509 3.004734 GGTAATGGCGGGAGATTTCAATG 59.995 47.826 0.00 0.00 0.00 2.82
508 510 3.222603 GGTAATGGCGGGAGATTTCAAT 58.777 45.455 0.00 0.00 0.00 2.57
509 511 2.025793 TGGTAATGGCGGGAGATTTCAA 60.026 45.455 0.00 0.00 0.00 2.69
542 545 9.464714 AGTTGCTACGTACTCTAAATATTCATG 57.535 33.333 0.00 0.00 0.00 3.07
548 551 5.125900 TGGCAGTTGCTACGTACTCTAAATA 59.874 40.000 3.88 0.00 41.70 1.40
566 569 4.323417 TGAGACGAATAAAATGTGGCAGT 58.677 39.130 0.00 0.00 0.00 4.40
592 595 8.601476 CACCGAGATATTTGTAGGAGTTAAAAC 58.399 37.037 0.00 0.00 0.00 2.43
594 597 7.844009 ACACCGAGATATTTGTAGGAGTTAAA 58.156 34.615 0.00 0.00 0.00 1.52
597 600 5.421056 TGACACCGAGATATTTGTAGGAGTT 59.579 40.000 0.00 0.00 0.00 3.01
599 602 5.515797 TGACACCGAGATATTTGTAGGAG 57.484 43.478 0.00 0.00 0.00 3.69
600 603 5.186215 TGTTGACACCGAGATATTTGTAGGA 59.814 40.000 0.00 0.00 0.00 2.94
601 604 5.416083 TGTTGACACCGAGATATTTGTAGG 58.584 41.667 0.00 0.00 0.00 3.18
603 606 7.625395 GCAAATGTTGACACCGAGATATTTGTA 60.625 37.037 0.00 0.00 36.90 2.41
604 607 6.611381 CAAATGTTGACACCGAGATATTTGT 58.389 36.000 0.00 0.00 32.53 2.83
608 648 4.517285 AGCAAATGTTGACACCGAGATAT 58.483 39.130 0.00 0.00 0.00 1.63
609 649 3.932710 GAGCAAATGTTGACACCGAGATA 59.067 43.478 0.00 0.00 0.00 1.98
615 655 0.603065 GGGGAGCAAATGTTGACACC 59.397 55.000 0.00 0.00 0.00 4.16
639 679 6.661805 GGAGTAGATAGGAGAGAACAATAGGG 59.338 46.154 0.00 0.00 0.00 3.53
640 680 6.661805 GGGAGTAGATAGGAGAGAACAATAGG 59.338 46.154 0.00 0.00 0.00 2.57
641 681 7.466804 AGGGAGTAGATAGGAGAGAACAATAG 58.533 42.308 0.00 0.00 0.00 1.73
642 682 7.409408 AGGGAGTAGATAGGAGAGAACAATA 57.591 40.000 0.00 0.00 0.00 1.90
643 683 6.288096 AGGGAGTAGATAGGAGAGAACAAT 57.712 41.667 0.00 0.00 0.00 2.71
644 684 5.399267 GGAGGGAGTAGATAGGAGAGAACAA 60.399 48.000 0.00 0.00 0.00 2.83
645 685 4.105057 GGAGGGAGTAGATAGGAGAGAACA 59.895 50.000 0.00 0.00 0.00 3.18
646 686 4.659115 GGAGGGAGTAGATAGGAGAGAAC 58.341 52.174 0.00 0.00 0.00 3.01
647 687 3.328343 CGGAGGGAGTAGATAGGAGAGAA 59.672 52.174 0.00 0.00 0.00 2.87
648 688 2.907696 CGGAGGGAGTAGATAGGAGAGA 59.092 54.545 0.00 0.00 0.00 3.10
649 689 2.640826 ACGGAGGGAGTAGATAGGAGAG 59.359 54.545 0.00 0.00 0.00 3.20
650 690 2.638855 GACGGAGGGAGTAGATAGGAGA 59.361 54.545 0.00 0.00 0.00 3.71
652 692 1.704070 GGACGGAGGGAGTAGATAGGA 59.296 57.143 0.00 0.00 0.00 2.94
653 693 1.272037 GGGACGGAGGGAGTAGATAGG 60.272 61.905 0.00 0.00 0.00 2.57
655 695 1.526315 TGGGACGGAGGGAGTAGATA 58.474 55.000 0.00 0.00 0.00 1.98
656 696 0.861155 ATGGGACGGAGGGAGTAGAT 59.139 55.000 0.00 0.00 0.00 1.98
657 697 1.526315 TATGGGACGGAGGGAGTAGA 58.474 55.000 0.00 0.00 0.00 2.59
658 698 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
674 739 7.435068 AGTGTCAAAAACGCTCTTACATTAT 57.565 32.000 0.00 0.00 45.69 1.28
679 744 5.233689 ACTGTAGTGTCAAAAACGCTCTTAC 59.766 40.000 0.00 0.00 45.69 2.34
697 762 8.684973 ATAAGAGCGTTTTTACACTACTGTAG 57.315 34.615 13.13 13.13 34.25 2.74
699 764 9.649167 AATATAAGAGCGTTTTTACACTACTGT 57.351 29.630 0.00 0.00 0.00 3.55
705 770 9.048446 TCCCATAATATAAGAGCGTTTTTACAC 57.952 33.333 0.00 0.00 0.00 2.90
706 771 9.048446 GTCCCATAATATAAGAGCGTTTTTACA 57.952 33.333 0.00 0.00 0.00 2.41
707 772 8.219105 CGTCCCATAATATAAGAGCGTTTTTAC 58.781 37.037 0.00 0.00 0.00 2.01
728 830 4.458642 GTCATATAGTACTTCCTCCGTCCC 59.541 50.000 0.00 0.00 0.00 4.46
729 831 4.153835 CGTCATATAGTACTTCCTCCGTCC 59.846 50.000 0.00 0.00 0.00 4.79
736 838 8.931385 TTACCAAAACGTCATATAGTACTTCC 57.069 34.615 0.00 0.00 0.00 3.46
757 859 9.458374 CCGTTCCAAAATATATGACATTTTACC 57.542 33.333 0.00 0.00 34.61 2.85
760 862 8.413229 CCTCCGTTCCAAAATATATGACATTTT 58.587 33.333 0.00 0.00 36.31 1.82
761 863 7.470009 GCCTCCGTTCCAAAATATATGACATTT 60.470 37.037 0.00 0.00 0.00 2.32
762 864 6.016276 GCCTCCGTTCCAAAATATATGACATT 60.016 38.462 0.00 0.00 0.00 2.71
763 865 5.473504 GCCTCCGTTCCAAAATATATGACAT 59.526 40.000 0.00 0.00 0.00 3.06
764 866 4.819630 GCCTCCGTTCCAAAATATATGACA 59.180 41.667 0.00 0.00 0.00 3.58
765 867 4.819630 TGCCTCCGTTCCAAAATATATGAC 59.180 41.667 0.00 0.00 0.00 3.06
766 868 5.042463 TGCCTCCGTTCCAAAATATATGA 57.958 39.130 0.00 0.00 0.00 2.15
767 869 4.821805 ACTGCCTCCGTTCCAAAATATATG 59.178 41.667 0.00 0.00 0.00 1.78
768 870 5.048846 ACTGCCTCCGTTCCAAAATATAT 57.951 39.130 0.00 0.00 0.00 0.86
769 871 4.497291 ACTGCCTCCGTTCCAAAATATA 57.503 40.909 0.00 0.00 0.00 0.86
770 872 3.366052 ACTGCCTCCGTTCCAAAATAT 57.634 42.857 0.00 0.00 0.00 1.28
771 873 2.871096 ACTGCCTCCGTTCCAAAATA 57.129 45.000 0.00 0.00 0.00 1.40
772 874 2.871096 TACTGCCTCCGTTCCAAAAT 57.129 45.000 0.00 0.00 0.00 1.82
775 877 2.500229 CTTTTACTGCCTCCGTTCCAA 58.500 47.619 0.00 0.00 0.00 3.53
777 879 1.271217 ACCTTTTACTGCCTCCGTTCC 60.271 52.381 0.00 0.00 0.00 3.62
787 889 9.769093 CGAGGAAAACATATTTACCTTTTACTG 57.231 33.333 0.00 0.00 28.73 2.74
794 896 5.397559 CCCTCCGAGGAAAACATATTTACCT 60.398 44.000 16.69 0.00 37.67 3.08
795 897 4.820173 CCCTCCGAGGAAAACATATTTACC 59.180 45.833 16.69 0.00 37.67 2.85
812 914 2.440796 ATGCATTGTGGCCCTCCG 60.441 61.111 0.00 0.00 34.14 4.63
813 915 2.428925 CCATGCATTGTGGCCCTCC 61.429 63.158 0.00 0.00 0.00 4.30
967 1069 2.152699 CGCCGGCGATGTCGATATC 61.153 63.158 44.86 11.81 43.02 1.63
996 1098 1.233019 CGGGATTGCCTGACATGATC 58.767 55.000 0.00 0.00 43.76 2.92
1146 1248 1.892819 CGATATCCATGGCCTCCGCT 61.893 60.000 6.96 0.00 34.44 5.52
1180 1282 2.992689 TCCTGTGGCGGCGTTAGA 60.993 61.111 9.37 0.00 0.00 2.10
1330 1432 6.016276 AGGAACAGTACGAATTGAAAAATGCT 60.016 34.615 0.00 0.00 0.00 3.79
1332 1434 6.519761 CGAGGAACAGTACGAATTGAAAAATG 59.480 38.462 0.00 0.00 0.00 2.32
1357 1461 7.519970 CGAATGATACCCATAACTTGTAAAGCC 60.520 40.741 0.00 0.00 40.58 4.35
1365 1469 5.888982 ACTCCGAATGATACCCATAACTT 57.111 39.130 0.00 0.00 34.45 2.66
1438 1548 8.137437 CCCCAATAATTTGATGAACACAGATAC 58.863 37.037 0.00 0.00 34.60 2.24
1464 1575 2.161410 TGCTTGTGACGCCAATGTAATC 59.839 45.455 0.00 0.00 0.00 1.75
1933 2058 6.597672 ACCAGCAAATTTATCGATGTAGAACA 59.402 34.615 8.54 0.00 0.00 3.18
1980 2123 2.038269 AACGGCCACTTGGTATGCG 61.038 57.895 2.24 0.00 37.57 4.73
2097 2240 0.178068 ATGGTACGACCTGACATGGC 59.822 55.000 0.00 0.00 39.58 4.40
2427 2570 3.008266 TCAGATTGCATCAGGACTTCACA 59.992 43.478 0.00 0.00 0.00 3.58
2428 2571 3.603532 TCAGATTGCATCAGGACTTCAC 58.396 45.455 0.00 0.00 0.00 3.18
2467 2610 5.776173 ATGAGATACTTCACGGACCTAAG 57.224 43.478 0.00 0.00 0.00 2.18
2759 2902 4.647424 TCAAAAACAAAACCTGCGAGAT 57.353 36.364 0.00 0.00 0.00 2.75
3260 3405 9.692749 CAGATCATTAACGCTACTAAGGAAATA 57.307 33.333 0.00 0.00 0.00 1.40
3405 3570 9.448438 TTCATAAGCAGACTTTCTTGCTAAATA 57.552 29.630 0.00 0.00 37.33 1.40
3641 3808 0.319405 GGCTGGCACAATTTCAAGCT 59.681 50.000 0.00 0.00 38.70 3.74
3806 3973 5.240623 CCAGGCAAATTACTTACTGTTCACA 59.759 40.000 0.00 0.00 0.00 3.58
3830 3997 1.014564 GCAGCACCGGAGTACAACTC 61.015 60.000 9.46 0.00 44.32 3.01
3831 3998 1.004918 GCAGCACCGGAGTACAACT 60.005 57.895 9.46 0.00 0.00 3.16
3832 3999 1.301401 TGCAGCACCGGAGTACAAC 60.301 57.895 9.46 0.00 0.00 3.32
3833 4000 1.301401 GTGCAGCACCGGAGTACAA 60.301 57.895 15.27 0.00 0.00 2.41
3839 4006 0.613260 ATAAAGAGTGCAGCACCGGA 59.387 50.000 22.41 3.85 34.49 5.14
3872 4039 4.403432 CCAGGAACCTGCATATTGTCAATT 59.597 41.667 14.66 0.00 42.35 2.32
3883 4050 3.265737 ACATGTTATACCAGGAACCTGCA 59.734 43.478 14.66 7.10 42.35 4.41
3966 4140 2.617274 GCCAAACACACGCCTCTCC 61.617 63.158 0.00 0.00 0.00 3.71
3970 4144 1.616159 AAATAGCCAAACACACGCCT 58.384 45.000 0.00 0.00 0.00 5.52
3971 4145 2.486592 ACTAAATAGCCAAACACACGCC 59.513 45.455 0.00 0.00 0.00 5.68
3972 4146 3.187637 TCACTAAATAGCCAAACACACGC 59.812 43.478 0.00 0.00 0.00 5.34
3976 4150 6.509418 TCCATTCACTAAATAGCCAAACAC 57.491 37.500 0.00 0.00 0.00 3.32
3998 4172 5.107337 CGTGAGTGTATGATGTATTGCCATC 60.107 44.000 0.00 0.00 41.32 3.51
4088 4262 5.664294 AGCTGGCAATGAATAATGACAAA 57.336 34.783 0.00 0.00 33.31 2.83
4158 4361 9.561270 GGCATCTTATCTAACAAAAAGAAGAAC 57.439 33.333 0.00 0.00 32.13 3.01
4221 4429 8.853077 AAACCTAGTTACACCAAAACTATACC 57.147 34.615 0.00 0.00 38.42 2.73
4229 4437 4.922471 GGCAAAACCTAGTTACACCAAA 57.078 40.909 0.00 0.00 34.51 3.28
4254 4462 8.134895 TGGCTAACAAAAAGAAGAATACAACAG 58.865 33.333 0.00 0.00 0.00 3.16
4338 8251 6.049790 AGGAATCGCTAGAAATTTGTAGACC 58.950 40.000 22.81 15.97 0.00 3.85
4342 8255 7.681939 ACAAAGGAATCGCTAGAAATTTGTA 57.318 32.000 0.00 0.00 37.73 2.41
4362 8275 7.344871 TCCCTTTGGTTTCAGGTTAATAACAAA 59.655 33.333 5.45 0.00 0.00 2.83
4369 8286 4.799715 TCTCCCTTTGGTTTCAGGTTAA 57.200 40.909 0.00 0.00 0.00 2.01
4370 8287 4.508405 CCATCTCCCTTTGGTTTCAGGTTA 60.508 45.833 0.00 0.00 0.00 2.85
4371 8288 3.500343 CATCTCCCTTTGGTTTCAGGTT 58.500 45.455 0.00 0.00 0.00 3.50
4376 8293 1.852633 CCCCATCTCCCTTTGGTTTC 58.147 55.000 0.00 0.00 0.00 2.78
4434 8352 3.396260 TCCTAACTGTTTGTTCCTCCG 57.604 47.619 0.00 0.00 39.89 4.63
4462 8380 1.133253 CGCACTTGCACTTCCATCG 59.867 57.895 1.48 0.00 42.21 3.84
4470 8388 1.683790 CCTACGCTACGCACTTGCAC 61.684 60.000 1.48 0.00 42.21 4.57
4471 8389 1.445410 CCTACGCTACGCACTTGCA 60.445 57.895 1.48 0.00 42.21 4.08
4487 8420 1.426598 CTTGCATACCATCCCATCCCT 59.573 52.381 0.00 0.00 0.00 4.20
4488 8421 1.425066 TCTTGCATACCATCCCATCCC 59.575 52.381 0.00 0.00 0.00 3.85
4490 8423 3.005554 CGATCTTGCATACCATCCCATC 58.994 50.000 0.00 0.00 0.00 3.51
4491 8424 2.290514 CCGATCTTGCATACCATCCCAT 60.291 50.000 0.00 0.00 0.00 4.00
4655 8589 1.573108 TGGTCCAAACCCTGCAAAAA 58.427 45.000 0.00 0.00 45.83 1.94
4659 8593 1.152567 CCTTGGTCCAAACCCTGCA 60.153 57.895 5.64 0.00 45.83 4.41
4660 8594 0.251787 ATCCTTGGTCCAAACCCTGC 60.252 55.000 5.64 0.00 45.83 4.85
4661 8595 2.171003 GAATCCTTGGTCCAAACCCTG 58.829 52.381 5.64 0.00 45.83 4.45
4662 8596 1.786441 TGAATCCTTGGTCCAAACCCT 59.214 47.619 5.64 0.00 45.83 4.34
4663 8597 1.893137 GTGAATCCTTGGTCCAAACCC 59.107 52.381 5.64 0.00 45.83 4.11
4664 8598 1.539827 CGTGAATCCTTGGTCCAAACC 59.460 52.381 5.64 0.00 46.66 3.27
4697 8631 1.726853 ACACCATTCTCGTAAGCAGC 58.273 50.000 0.00 0.00 37.18 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.