Multiple sequence alignment - TraesCS3A01G222400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G222400 chr3A 100.000 4616 0 0 1 4616 416143046 416138431 0.000000e+00 8525.0
1 TraesCS3A01G222400 chr3A 81.416 113 20 1 4470 4581 514098605 514098717 1.770000e-14 91.6
2 TraesCS3A01G222400 chr3D 94.753 3793 128 28 1 3763 313631792 313628041 0.000000e+00 5836.0
3 TraesCS3A01G222400 chr3D 91.351 370 25 2 3835 4199 313628012 313627645 2.480000e-137 499.0
4 TraesCS3A01G222400 chr3D 83.154 279 41 4 4199 4471 475549923 475549645 2.760000e-62 250.0
5 TraesCS3A01G222400 chr3D 80.741 135 25 1 4466 4599 573435152 573435018 2.270000e-18 104.0
6 TraesCS3A01G222400 chr3B 93.935 3100 97 20 684 3755 405945563 405948599 0.000000e+00 4599.0
7 TraesCS3A01G222400 chr3B 88.619 659 34 9 1 659 405937345 405937962 0.000000e+00 763.0
8 TraesCS3A01G222400 chr3B 90.463 367 25 4 3843 4199 405948600 405948966 4.180000e-130 475.0
9 TraesCS3A01G222400 chr3B 84.615 273 37 3 4199 4466 755478756 755478484 2.740000e-67 267.0
10 TraesCS3A01G222400 chr3B 83.929 280 40 3 4199 4473 254192914 254193193 3.540000e-66 263.0
11 TraesCS3A01G222400 chr3B 80.435 138 23 3 4466 4599 404830338 404830475 8.170000e-18 102.0
12 TraesCS3A01G222400 chr3B 81.250 128 23 1 4473 4599 647907062 647906935 8.170000e-18 102.0
13 TraesCS3A01G222400 chr6D 84.249 273 36 5 4199 4466 472495984 472495714 4.580000e-65 259.0
14 TraesCS3A01G222400 chr6D 88.764 89 6 1 3759 3843 175719063 175718975 6.320000e-19 106.0
15 TraesCS3A01G222400 chr4A 83.571 280 40 4 4199 4473 541366953 541367231 1.650000e-64 257.0
16 TraesCS3A01G222400 chr6B 83.883 273 38 4 4199 4466 628238652 628238923 5.930000e-64 255.0
17 TraesCS3A01G222400 chr7D 82.979 282 42 4 4199 4474 555059240 555059521 2.760000e-62 250.0
18 TraesCS3A01G222400 chr7D 83.026 271 39 5 4201 4465 64180795 64181064 5.970000e-59 239.0
19 TraesCS3A01G222400 chr1A 82.545 275 38 8 4199 4466 508634123 508633852 2.780000e-57 233.0
20 TraesCS3A01G222400 chr1A 87.879 99 11 1 3751 3848 53035371 53035469 1.050000e-21 115.0
21 TraesCS3A01G222400 chr1A 87.629 97 7 3 3752 3847 331272194 331272286 1.760000e-19 108.0
22 TraesCS3A01G222400 chr1A 87.097 93 8 4 3753 3845 331272281 331272193 8.170000e-18 102.0
23 TraesCS3A01G222400 chr1A 80.000 135 23 3 4466 4597 155857838 155857705 3.800000e-16 97.1
24 TraesCS3A01G222400 chr2D 87.500 96 9 3 3752 3846 73569827 73569920 1.760000e-19 108.0
25 TraesCS3A01G222400 chr2D 81.343 134 21 3 4466 4597 345076117 345076248 6.320000e-19 106.0
26 TraesCS3A01G222400 chr1B 87.629 97 7 3 3752 3847 355408268 355408360 1.760000e-19 108.0
27 TraesCS3A01G222400 chr1B 87.097 93 8 4 3753 3845 355408355 355408267 8.170000e-18 102.0
28 TraesCS3A01G222400 chr1B 85.714 98 6 4 3751 3848 85441624 85441713 3.800000e-16 97.1
29 TraesCS3A01G222400 chr1B 91.304 46 4 0 924 969 548831015 548830970 3.860000e-06 63.9
30 TraesCS3A01G222400 chr4D 80.882 136 22 3 4466 4598 3566451 3566317 2.270000e-18 104.0
31 TraesCS3A01G222400 chr2B 86.869 99 6 2 3750 3848 247368535 247368626 2.270000e-18 104.0
32 TraesCS3A01G222400 chr1D 80.451 133 23 2 4466 4597 137418320 137418450 1.060000e-16 99.0
33 TraesCS3A01G222400 chr5A 78.947 133 28 0 4466 4598 428155653 428155521 1.770000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G222400 chr3A 416138431 416143046 4615 True 8525.0 8525 100.000 1 4616 1 chr3A.!!$R1 4615
1 TraesCS3A01G222400 chr3D 313627645 313631792 4147 True 3167.5 5836 93.052 1 4199 2 chr3D.!!$R3 4198
2 TraesCS3A01G222400 chr3B 405945563 405948966 3403 False 2537.0 4599 92.199 684 4199 2 chr3B.!!$F4 3515
3 TraesCS3A01G222400 chr3B 405937345 405937962 617 False 763.0 763 88.619 1 659 1 chr3B.!!$F3 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
995 1004 0.255890 CCGGTCCATTCCATCCAAGT 59.744 55.0 0.00 0.00 0.00 3.16 F
1855 1894 1.734163 TAGGTAGGAAAAGCAAGCGC 58.266 50.0 0.00 0.00 38.99 5.92 F
1857 1896 0.169009 GGTAGGAAAAGCAAGCGCAG 59.831 55.0 11.47 2.01 42.27 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 1896 0.887387 TTAAAGACACGGGTGCTGCC 60.887 55.000 0.0 0.0 0.00 4.85 R
2814 2871 1.300465 CTCCACGATCTCCGGCATG 60.300 63.158 0.0 0.0 43.93 4.06 R
3833 3898 1.457346 GCTTGCAATGTACTGCCTCT 58.543 50.000 0.0 0.0 41.90 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 4.260132 GCATGACAAATTCGTCTAGCTCAG 60.260 45.833 0.00 0.00 36.82 3.35
104 105 5.652994 ATTCGTCTAGCTCAGTTTCTCTT 57.347 39.130 0.00 0.00 0.00 2.85
115 116 7.680730 AGCTCAGTTTCTCTTAGAATTTACCA 58.319 34.615 0.00 0.00 33.67 3.25
158 159 3.057526 GCCATCCTCACAACAACCTAAAC 60.058 47.826 0.00 0.00 0.00 2.01
159 160 4.141287 CCATCCTCACAACAACCTAAACA 58.859 43.478 0.00 0.00 0.00 2.83
171 172 4.581409 ACAACCTAAACAGCCATAAAACGT 59.419 37.500 0.00 0.00 0.00 3.99
202 205 3.321682 TCATGCCCTTCCAGAAAAACTTG 59.678 43.478 0.00 0.00 0.00 3.16
208 211 3.548818 CCTTCCAGAAAAACTTGAGCACG 60.549 47.826 0.00 0.00 0.00 5.34
273 276 2.727798 CAGGTGGTACAAAAGTCGTACG 59.272 50.000 9.53 9.53 44.16 3.67
276 279 2.154389 GTGGTACAAAAGTCGTACGCAG 59.846 50.000 11.24 0.00 44.16 5.18
278 281 1.788308 GTACAAAAGTCGTACGCAGCA 59.212 47.619 11.24 0.00 30.72 4.41
471 474 3.052082 CACTGCAGCCCGTTCCTG 61.052 66.667 15.27 0.00 0.00 3.86
525 530 0.682209 TTCCCGGAACTACCCTCTCG 60.682 60.000 0.73 0.00 34.64 4.04
659 664 2.618053 GTAGGACGGTCATTTCACCTG 58.382 52.381 10.76 0.00 33.77 4.00
752 761 1.979693 GTGGCCGACCTGTCTCTCT 60.980 63.158 0.00 0.00 36.63 3.10
753 762 1.679305 TGGCCGACCTGTCTCTCTC 60.679 63.158 0.00 0.00 36.63 3.20
754 763 1.379309 GGCCGACCTGTCTCTCTCT 60.379 63.158 0.00 0.00 0.00 3.10
755 764 1.381165 GGCCGACCTGTCTCTCTCTC 61.381 65.000 0.00 0.00 0.00 3.20
756 765 0.393808 GCCGACCTGTCTCTCTCTCT 60.394 60.000 0.00 0.00 0.00 3.10
757 766 1.663695 CCGACCTGTCTCTCTCTCTC 58.336 60.000 0.00 0.00 0.00 3.20
758 767 1.209504 CCGACCTGTCTCTCTCTCTCT 59.790 57.143 0.00 0.00 0.00 3.10
759 768 2.550978 CGACCTGTCTCTCTCTCTCTC 58.449 57.143 0.00 0.00 0.00 3.20
760 769 2.168521 CGACCTGTCTCTCTCTCTCTCT 59.831 54.545 0.00 0.00 0.00 3.10
761 770 3.738281 CGACCTGTCTCTCTCTCTCTCTC 60.738 56.522 0.00 0.00 0.00 3.20
762 771 3.452627 GACCTGTCTCTCTCTCTCTCTCT 59.547 52.174 0.00 0.00 0.00 3.10
763 772 3.452627 ACCTGTCTCTCTCTCTCTCTCTC 59.547 52.174 0.00 0.00 0.00 3.20
764 773 3.708631 CCTGTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
765 774 4.202202 CCTGTCTCTCTCTCTCTCTCTCTC 60.202 54.167 0.00 0.00 0.00 3.20
807 816 0.872388 GTATTAAAGCCCCATCGCCG 59.128 55.000 0.00 0.00 0.00 6.46
925 934 2.120909 CAACCACCATCATCCCCGC 61.121 63.158 0.00 0.00 0.00 6.13
995 1004 0.255890 CCGGTCCATTCCATCCAAGT 59.744 55.000 0.00 0.00 0.00 3.16
1688 1718 4.760047 CTGGACTTGGACGGCCCG 62.760 72.222 3.83 0.00 37.93 6.13
1752 1782 2.285834 CGCTGGCTTTAATTGCTACGAG 60.286 50.000 0.00 0.00 0.00 4.18
1754 1784 3.001736 GCTGGCTTTAATTGCTACGAGAG 59.998 47.826 0.00 0.00 0.00 3.20
1811 1850 7.721399 CACTGGCCTGGAGTATTAATTTCTTAT 59.279 37.037 14.82 0.00 0.00 1.73
1812 1851 8.282256 ACTGGCCTGGAGTATTAATTTCTTATT 58.718 33.333 14.82 0.00 0.00 1.40
1813 1852 9.793259 CTGGCCTGGAGTATTAATTTCTTATTA 57.207 33.333 3.32 0.00 0.00 0.98
1854 1893 4.636206 AGATTTAGGTAGGAAAAGCAAGCG 59.364 41.667 0.00 0.00 0.00 4.68
1855 1894 1.734163 TAGGTAGGAAAAGCAAGCGC 58.266 50.000 0.00 0.00 38.99 5.92
1856 1895 0.250727 AGGTAGGAAAAGCAAGCGCA 60.251 50.000 11.47 0.00 42.27 6.09
1857 1896 0.169009 GGTAGGAAAAGCAAGCGCAG 59.831 55.000 11.47 2.01 42.27 5.18
1858 1897 0.169009 GTAGGAAAAGCAAGCGCAGG 59.831 55.000 11.47 1.05 42.27 4.85
1859 1898 1.586154 TAGGAAAAGCAAGCGCAGGC 61.586 55.000 11.47 13.31 42.27 4.85
1860 1899 2.336088 GAAAAGCAAGCGCAGGCA 59.664 55.556 22.56 0.00 43.41 4.75
1861 1900 1.731969 GAAAAGCAAGCGCAGGCAG 60.732 57.895 22.56 3.43 43.41 4.85
1862 1901 3.853597 AAAAGCAAGCGCAGGCAGC 62.854 57.895 22.56 12.66 43.41 5.25
1964 2019 5.865552 CGCTTCATCCTTTTTCATTGACAAT 59.134 36.000 0.00 0.00 0.00 2.71
1970 2025 8.090214 TCATCCTTTTTCATTGACAATTTCCTC 58.910 33.333 0.00 0.00 0.00 3.71
1971 2026 6.446318 TCCTTTTTCATTGACAATTTCCTCG 58.554 36.000 0.00 0.00 0.00 4.63
1996 2051 7.360269 CGTCTAATTAGTGGCCTTTTTCGTTAA 60.360 37.037 12.19 0.00 0.00 2.01
2014 2069 7.989416 TCGTTAACCCAAAATACAGAAATCT 57.011 32.000 0.00 0.00 0.00 2.40
2121 2176 2.799126 TTTCTGGGTGTGACTTGTGT 57.201 45.000 0.00 0.00 0.00 3.72
2123 2178 4.431416 TTTCTGGGTGTGACTTGTGTAT 57.569 40.909 0.00 0.00 0.00 2.29
2181 2238 5.726980 ACCATGCAACAATCTACACATTT 57.273 34.783 0.00 0.00 0.00 2.32
2743 2800 3.068691 TCCTCTTCGAGCCCACCG 61.069 66.667 0.00 0.00 0.00 4.94
2745 2802 4.069232 CTCTTCGAGCCCACCGCA 62.069 66.667 0.00 0.00 41.38 5.69
2814 2871 1.300542 GGGCATCTACGAGCAGCTC 60.301 63.158 12.94 12.94 0.00 4.09
2853 2910 2.270205 CTGAGGGCGCACAAGGAT 59.730 61.111 14.57 0.00 0.00 3.24
2862 2919 2.434884 CACAAGGATGGCGCTCGT 60.435 61.111 7.64 0.00 0.00 4.18
2976 3033 3.307906 CCCGTGGTCACCTTCGGA 61.308 66.667 25.38 0.00 41.26 4.55
3075 3132 4.082523 CACCGGGACATCGTGCCT 62.083 66.667 6.32 0.00 41.99 4.75
3278 3335 4.966787 GCTGTTCCGGGTGGCCAA 62.967 66.667 7.24 0.00 34.14 4.52
3750 3815 8.163408 TGGTGTAGGTTTAGTGTAGTAGAGTAA 58.837 37.037 0.00 0.00 0.00 2.24
3765 3830 3.678915 GAGTAAGTACTCTCTCCGCAC 57.321 52.381 10.62 0.00 46.99 5.34
3766 3831 2.355444 GAGTAAGTACTCTCTCCGCACC 59.645 54.545 10.62 0.00 46.99 5.01
3767 3832 2.089980 GTAAGTACTCTCTCCGCACCA 58.910 52.381 0.00 0.00 0.00 4.17
3771 3836 2.567615 AGTACTCTCTCCGCACCAAAAT 59.432 45.455 0.00 0.00 0.00 1.82
3772 3837 3.767673 AGTACTCTCTCCGCACCAAAATA 59.232 43.478 0.00 0.00 0.00 1.40
3773 3838 3.914426 ACTCTCTCCGCACCAAAATAT 57.086 42.857 0.00 0.00 0.00 1.28
3774 3839 5.597182 AGTACTCTCTCCGCACCAAAATATA 59.403 40.000 0.00 0.00 0.00 0.86
3775 3840 5.353394 ACTCTCTCCGCACCAAAATATAA 57.647 39.130 0.00 0.00 0.00 0.98
3776 3841 5.360591 ACTCTCTCCGCACCAAAATATAAG 58.639 41.667 0.00 0.00 0.00 1.73
3777 3842 5.128827 ACTCTCTCCGCACCAAAATATAAGA 59.871 40.000 0.00 0.00 0.00 2.10
3778 3843 5.357257 TCTCTCCGCACCAAAATATAAGAC 58.643 41.667 0.00 0.00 0.00 3.01
3779 3844 4.116961 TCTCCGCACCAAAATATAAGACG 58.883 43.478 0.00 0.00 0.00 4.18
3780 3845 3.864243 TCCGCACCAAAATATAAGACGT 58.136 40.909 0.00 0.00 0.00 4.34
3784 3849 5.859648 CCGCACCAAAATATAAGACGTTTTT 59.140 36.000 0.00 0.00 0.00 1.94
3785 3850 6.183359 CCGCACCAAAATATAAGACGTTTTTG 60.183 38.462 11.96 11.96 38.28 2.44
3786 3851 6.521898 GCACCAAAATATAAGACGTTTTTGC 58.478 36.000 13.03 3.70 37.60 3.68
3787 3852 6.144724 GCACCAAAATATAAGACGTTTTTGCA 59.855 34.615 13.03 0.00 37.60 4.08
3788 3853 7.619161 GCACCAAAATATAAGACGTTTTTGCAG 60.619 37.037 13.03 9.44 37.60 4.41
3789 3854 7.381139 CACCAAAATATAAGACGTTTTTGCAGT 59.619 33.333 13.03 6.29 37.60 4.40
3790 3855 7.923878 ACCAAAATATAAGACGTTTTTGCAGTT 59.076 29.630 13.03 0.00 37.60 3.16
3791 3856 8.424731 CCAAAATATAAGACGTTTTTGCAGTTC 58.575 33.333 13.03 0.00 37.60 3.01
3792 3857 8.963130 CAAAATATAAGACGTTTTTGCAGTTCA 58.037 29.630 7.67 0.00 33.75 3.18
3793 3858 9.522804 AAAATATAAGACGTTTTTGCAGTTCAA 57.477 25.926 0.00 0.00 0.00 2.69
3794 3859 9.522804 AAATATAAGACGTTTTTGCAGTTCAAA 57.477 25.926 0.00 0.00 42.50 2.69
3795 3860 9.691362 AATATAAGACGTTTTTGCAGTTCAAAT 57.309 25.926 0.00 0.00 43.53 2.32
3796 3861 9.691362 ATATAAGACGTTTTTGCAGTTCAAATT 57.309 25.926 0.00 0.00 43.53 1.82
3797 3862 6.720012 AAGACGTTTTTGCAGTTCAAATTT 57.280 29.167 0.00 0.00 43.53 1.82
3798 3863 6.093532 AGACGTTTTTGCAGTTCAAATTTG 57.906 33.333 12.15 12.15 43.53 2.32
3799 3864 5.866633 AGACGTTTTTGCAGTTCAAATTTGA 59.133 32.000 16.91 16.91 43.53 2.69
3800 3865 6.367422 AGACGTTTTTGCAGTTCAAATTTGAA 59.633 30.769 26.01 26.01 43.53 2.69
3813 3878 7.664082 TTCAAATTTGAACTGAACTGCAAAA 57.336 28.000 26.01 2.78 41.88 2.44
3814 3879 7.664082 TCAAATTTGAACTGAACTGCAAAAA 57.336 28.000 18.45 0.00 34.38 1.94
3815 3880 7.517321 TCAAATTTGAACTGAACTGCAAAAAC 58.483 30.769 18.45 0.00 34.38 2.43
3816 3881 5.701029 ATTTGAACTGAACTGCAAAAACG 57.299 34.783 0.00 0.00 34.38 3.60
3817 3882 3.840890 TGAACTGAACTGCAAAAACGT 57.159 38.095 0.00 0.00 0.00 3.99
3818 3883 3.753842 TGAACTGAACTGCAAAAACGTC 58.246 40.909 0.00 0.00 0.00 4.34
3819 3884 3.438781 TGAACTGAACTGCAAAAACGTCT 59.561 39.130 0.00 0.00 0.00 4.18
3820 3885 4.083003 TGAACTGAACTGCAAAAACGTCTT 60.083 37.500 0.00 0.00 0.00 3.01
3821 3886 5.122554 TGAACTGAACTGCAAAAACGTCTTA 59.877 36.000 0.00 0.00 0.00 2.10
3822 3887 5.751243 ACTGAACTGCAAAAACGTCTTAT 57.249 34.783 0.00 0.00 0.00 1.73
3823 3888 6.854496 ACTGAACTGCAAAAACGTCTTATA 57.146 33.333 0.00 0.00 0.00 0.98
3824 3889 7.435068 ACTGAACTGCAAAAACGTCTTATAT 57.565 32.000 0.00 0.00 0.00 0.86
3825 3890 7.871853 ACTGAACTGCAAAAACGTCTTATATT 58.128 30.769 0.00 0.00 0.00 1.28
3826 3891 8.349983 ACTGAACTGCAAAAACGTCTTATATTT 58.650 29.630 0.00 0.00 0.00 1.40
3827 3892 9.180678 CTGAACTGCAAAAACGTCTTATATTTT 57.819 29.630 0.00 0.00 0.00 1.82
3828 3893 8.963130 TGAACTGCAAAAACGTCTTATATTTTG 58.037 29.630 13.82 13.82 42.66 2.44
3829 3894 7.867445 ACTGCAAAAACGTCTTATATTTTGG 57.133 32.000 17.78 8.43 41.02 3.28
3830 3895 7.430441 ACTGCAAAAACGTCTTATATTTTGGT 58.570 30.769 17.78 8.90 41.02 3.67
3831 3896 8.569641 ACTGCAAAAACGTCTTATATTTTGGTA 58.430 29.630 17.78 0.00 41.02 3.25
3832 3897 9.567848 CTGCAAAAACGTCTTATATTTTGGTAT 57.432 29.630 17.78 0.00 41.02 2.73
3838 3903 8.828688 AACGTCTTATATTTTGGTATAGAGGC 57.171 34.615 0.00 0.00 0.00 4.70
3894 3964 1.680735 TGATGTGGTTTGTTGTCCTGC 59.319 47.619 0.00 0.00 0.00 4.85
3950 4020 7.546316 TGAATAATGCAATGGTGATTTGTCAAG 59.454 33.333 0.00 0.00 0.00 3.02
4002 4072 8.044908 ACTCCACCTGTAAATTCGTTGTTATAT 58.955 33.333 0.00 0.00 0.00 0.86
4004 4074 9.887629 TCCACCTGTAAATTCGTTGTTATATAA 57.112 29.630 0.00 0.00 0.00 0.98
4052 4127 2.223386 ACAACCCAACGAAAATGACGTG 60.223 45.455 0.00 0.00 43.16 4.49
4147 4222 1.202758 TGGCTATACGCTCCAAATGGG 60.203 52.381 0.00 0.00 39.13 4.00
4164 4239 1.137479 TGGGTTCCTTATAACGGCTCG 59.863 52.381 0.00 0.00 0.00 5.03
4184 4259 7.853437 CGGCTCGATATACTTCACTTATCTATG 59.147 40.741 0.00 0.00 0.00 2.23
4193 4268 7.482169 ACTTCACTTATCTATGTCCAGTCAA 57.518 36.000 0.00 0.00 0.00 3.18
4204 4279 9.784531 ATCTATGTCCAGTCAATAGTATTTTGG 57.215 33.333 9.89 9.89 0.00 3.28
4205 4280 8.988060 TCTATGTCCAGTCAATAGTATTTTGGA 58.012 33.333 13.03 13.03 0.00 3.53
4206 4281 9.265901 CTATGTCCAGTCAATAGTATTTTGGAG 57.734 37.037 15.76 5.97 34.20 3.86
4207 4282 6.414732 TGTCCAGTCAATAGTATTTTGGAGG 58.585 40.000 15.76 6.39 34.20 4.30
4208 4283 6.214615 TGTCCAGTCAATAGTATTTTGGAGGA 59.785 38.462 15.76 8.08 34.20 3.71
4209 4284 7.092444 TGTCCAGTCAATAGTATTTTGGAGGAT 60.092 37.037 15.76 0.00 34.20 3.24
4210 4285 7.775561 GTCCAGTCAATAGTATTTTGGAGGATT 59.224 37.037 15.76 0.00 34.20 3.01
4211 4286 8.998814 TCCAGTCAATAGTATTTTGGAGGATTA 58.001 33.333 13.03 0.00 0.00 1.75
4212 4287 9.627123 CCAGTCAATAGTATTTTGGAGGATTAA 57.373 33.333 10.37 0.00 0.00 1.40
4245 4320 7.631717 GGAATTCTTCCTATGTTAGCTGTTT 57.368 36.000 5.23 0.00 46.57 2.83
4246 4321 7.698628 GGAATTCTTCCTATGTTAGCTGTTTC 58.301 38.462 5.23 0.00 46.57 2.78
4247 4322 7.336931 GGAATTCTTCCTATGTTAGCTGTTTCA 59.663 37.037 5.23 0.00 46.57 2.69
4248 4323 8.814038 AATTCTTCCTATGTTAGCTGTTTCAT 57.186 30.769 0.00 0.00 0.00 2.57
4249 4324 8.814038 ATTCTTCCTATGTTAGCTGTTTCATT 57.186 30.769 0.00 0.00 0.00 2.57
4250 4325 7.849804 TCTTCCTATGTTAGCTGTTTCATTC 57.150 36.000 0.00 0.00 0.00 2.67
4251 4326 7.394016 TCTTCCTATGTTAGCTGTTTCATTCA 58.606 34.615 0.00 0.00 0.00 2.57
4252 4327 7.882791 TCTTCCTATGTTAGCTGTTTCATTCAA 59.117 33.333 0.00 0.00 0.00 2.69
4253 4328 8.579850 TTCCTATGTTAGCTGTTTCATTCAAT 57.420 30.769 0.00 0.00 0.00 2.57
4254 4329 7.988737 TCCTATGTTAGCTGTTTCATTCAATG 58.011 34.615 0.00 0.00 0.00 2.82
4255 4330 7.611467 TCCTATGTTAGCTGTTTCATTCAATGT 59.389 33.333 0.00 0.00 0.00 2.71
4256 4331 7.699391 CCTATGTTAGCTGTTTCATTCAATGTG 59.301 37.037 0.00 0.00 0.00 3.21
4257 4332 6.631971 TGTTAGCTGTTTCATTCAATGTGA 57.368 33.333 0.00 0.00 0.00 3.58
4258 4333 7.036996 TGTTAGCTGTTTCATTCAATGTGAA 57.963 32.000 0.00 0.00 41.09 3.18
4260 4335 7.809331 TGTTAGCTGTTTCATTCAATGTGAATC 59.191 33.333 0.00 0.00 43.03 2.52
4261 4336 5.717119 AGCTGTTTCATTCAATGTGAATCC 58.283 37.500 0.00 0.00 43.03 3.01
4262 4337 5.479375 AGCTGTTTCATTCAATGTGAATCCT 59.521 36.000 0.00 0.00 43.03 3.24
4263 4338 6.660521 AGCTGTTTCATTCAATGTGAATCCTA 59.339 34.615 0.00 0.00 43.03 2.94
4264 4339 7.341256 AGCTGTTTCATTCAATGTGAATCCTAT 59.659 33.333 0.00 0.00 43.03 2.57
4265 4340 8.623903 GCTGTTTCATTCAATGTGAATCCTATA 58.376 33.333 0.00 0.00 43.03 1.31
4307 4382 7.775053 TTTTTGTACTATTTCCAGCAGGATT 57.225 32.000 0.00 0.00 45.26 3.01
4308 4383 7.775053 TTTTGTACTATTTCCAGCAGGATTT 57.225 32.000 0.00 0.00 45.26 2.17
4309 4384 7.391148 TTTGTACTATTTCCAGCAGGATTTC 57.609 36.000 0.00 0.00 45.26 2.17
4310 4385 6.313519 TGTACTATTTCCAGCAGGATTTCT 57.686 37.500 0.00 0.00 45.26 2.52
4311 4386 7.432148 TGTACTATTTCCAGCAGGATTTCTA 57.568 36.000 0.00 0.00 45.26 2.10
4312 4387 7.500992 TGTACTATTTCCAGCAGGATTTCTAG 58.499 38.462 0.00 1.07 45.26 2.43
4313 4388 5.372373 ACTATTTCCAGCAGGATTTCTAGC 58.628 41.667 0.00 0.00 45.26 3.42
4314 4389 3.719268 TTTCCAGCAGGATTTCTAGCA 57.281 42.857 0.00 0.00 45.26 3.49
4315 4390 3.939740 TTCCAGCAGGATTTCTAGCAT 57.060 42.857 0.00 0.00 45.26 3.79
4316 4391 3.482156 TCCAGCAGGATTTCTAGCATC 57.518 47.619 0.00 0.00 39.61 3.91
4317 4392 2.105477 TCCAGCAGGATTTCTAGCATCC 59.895 50.000 11.24 11.24 39.61 3.51
4327 4402 7.579761 GGATTTCTAGCATCCTTTCAAATCT 57.420 36.000 11.72 0.00 37.77 2.40
4328 4403 7.424001 GGATTTCTAGCATCCTTTCAAATCTG 58.576 38.462 11.72 0.00 37.77 2.90
4329 4404 7.067981 GGATTTCTAGCATCCTTTCAAATCTGT 59.932 37.037 11.72 0.00 37.77 3.41
4330 4405 7.765695 TTTCTAGCATCCTTTCAAATCTGTT 57.234 32.000 0.00 0.00 0.00 3.16
4331 4406 7.765695 TTCTAGCATCCTTTCAAATCTGTTT 57.234 32.000 0.00 0.00 0.00 2.83
4332 4407 7.383102 TCTAGCATCCTTTCAAATCTGTTTC 57.617 36.000 0.00 0.00 0.00 2.78
4333 4408 6.942005 TCTAGCATCCTTTCAAATCTGTTTCA 59.058 34.615 0.00 0.00 0.00 2.69
4334 4409 6.409524 AGCATCCTTTCAAATCTGTTTCAA 57.590 33.333 0.00 0.00 0.00 2.69
4335 4410 6.819284 AGCATCCTTTCAAATCTGTTTCAAA 58.181 32.000 0.00 0.00 0.00 2.69
4336 4411 6.927381 AGCATCCTTTCAAATCTGTTTCAAAG 59.073 34.615 0.00 0.00 0.00 2.77
4337 4412 6.925165 GCATCCTTTCAAATCTGTTTCAAAGA 59.075 34.615 0.00 0.00 0.00 2.52
4338 4413 7.439056 GCATCCTTTCAAATCTGTTTCAAAGAA 59.561 33.333 0.00 0.00 0.00 2.52
4339 4414 9.485206 CATCCTTTCAAATCTGTTTCAAAGAAT 57.515 29.630 0.00 0.00 0.00 2.40
4340 4415 9.702494 ATCCTTTCAAATCTGTTTCAAAGAATC 57.298 29.630 0.00 0.00 0.00 2.52
4341 4416 8.694540 TCCTTTCAAATCTGTTTCAAAGAATCA 58.305 29.630 0.00 0.00 0.00 2.57
4342 4417 9.485206 CCTTTCAAATCTGTTTCAAAGAATCAT 57.515 29.630 0.00 0.00 0.00 2.45
4346 4421 9.820725 TCAAATCTGTTTCAAAGAATCATTTGT 57.179 25.926 12.13 0.00 40.36 2.83
4378 4453 5.945466 GATGCAATCAAACAACCCAAAAT 57.055 34.783 0.00 0.00 44.70 1.82
4379 4454 5.930405 GATGCAATCAAACAACCCAAAATC 58.070 37.500 0.00 0.00 44.70 2.17
4380 4455 4.774124 TGCAATCAAACAACCCAAAATCA 58.226 34.783 0.00 0.00 0.00 2.57
4381 4456 5.374921 TGCAATCAAACAACCCAAAATCAT 58.625 33.333 0.00 0.00 0.00 2.45
4382 4457 5.238868 TGCAATCAAACAACCCAAAATCATG 59.761 36.000 0.00 0.00 0.00 3.07
4383 4458 5.239087 GCAATCAAACAACCCAAAATCATGT 59.761 36.000 0.00 0.00 0.00 3.21
4384 4459 6.426328 GCAATCAAACAACCCAAAATCATGTA 59.574 34.615 0.00 0.00 0.00 2.29
4385 4460 7.360269 GCAATCAAACAACCCAAAATCATGTAG 60.360 37.037 0.00 0.00 0.00 2.74
4386 4461 6.095432 TCAAACAACCCAAAATCATGTAGG 57.905 37.500 0.00 0.00 0.00 3.18
4387 4462 5.835819 TCAAACAACCCAAAATCATGTAGGA 59.164 36.000 0.00 0.00 0.00 2.94
4388 4463 6.496565 TCAAACAACCCAAAATCATGTAGGAT 59.503 34.615 0.00 0.00 0.00 3.24
4389 4464 6.933514 AACAACCCAAAATCATGTAGGATT 57.066 33.333 0.00 0.00 39.11 3.01
4390 4465 6.284891 ACAACCCAAAATCATGTAGGATTG 57.715 37.500 0.00 0.00 37.55 2.67
4391 4466 6.015918 ACAACCCAAAATCATGTAGGATTGA 58.984 36.000 0.00 0.00 37.55 2.57
4392 4467 6.153340 ACAACCCAAAATCATGTAGGATTGAG 59.847 38.462 0.00 0.00 37.55 3.02
4393 4468 6.078456 ACCCAAAATCATGTAGGATTGAGA 57.922 37.500 0.00 0.00 37.55 3.27
4394 4469 6.676558 ACCCAAAATCATGTAGGATTGAGAT 58.323 36.000 0.00 0.00 37.55 2.75
4395 4470 7.815383 ACCCAAAATCATGTAGGATTGAGATA 58.185 34.615 0.00 0.00 37.55 1.98
4396 4471 8.281531 ACCCAAAATCATGTAGGATTGAGATAA 58.718 33.333 0.00 0.00 37.55 1.75
4397 4472 8.790718 CCCAAAATCATGTAGGATTGAGATAAG 58.209 37.037 0.00 0.00 37.55 1.73
4398 4473 9.347240 CCAAAATCATGTAGGATTGAGATAAGT 57.653 33.333 0.00 0.00 37.55 2.24
4404 4479 9.367160 TCATGTAGGATTGAGATAAGTATGACA 57.633 33.333 0.00 0.00 0.00 3.58
4424 4499 8.961294 ATGACATTTCAATCCTTTGTTTTTCA 57.039 26.923 0.00 0.00 34.61 2.69
4425 4500 8.961294 TGACATTTCAATCCTTTGTTTTTCAT 57.039 26.923 0.00 0.00 34.32 2.57
4432 4507 9.624697 TTCAATCCTTTGTTTTTCATATTCTCG 57.375 29.630 0.00 0.00 34.32 4.04
4433 4508 7.754924 TCAATCCTTTGTTTTTCATATTCTCGC 59.245 33.333 0.00 0.00 34.32 5.03
4434 4509 6.567687 TCCTTTGTTTTTCATATTCTCGCA 57.432 33.333 0.00 0.00 0.00 5.10
4435 4510 7.156876 TCCTTTGTTTTTCATATTCTCGCAT 57.843 32.000 0.00 0.00 0.00 4.73
4436 4511 7.601856 TCCTTTGTTTTTCATATTCTCGCATT 58.398 30.769 0.00 0.00 0.00 3.56
4437 4512 8.087750 TCCTTTGTTTTTCATATTCTCGCATTT 58.912 29.630 0.00 0.00 0.00 2.32
4438 4513 8.711457 CCTTTGTTTTTCATATTCTCGCATTTT 58.289 29.630 0.00 0.00 0.00 1.82
4446 4521 9.950680 TTTCATATTCTCGCATTTTTAGAATCC 57.049 29.630 0.00 0.00 39.85 3.01
4447 4522 8.908786 TCATATTCTCGCATTTTTAGAATCCT 57.091 30.769 0.00 0.00 39.85 3.24
4448 4523 9.996554 TCATATTCTCGCATTTTTAGAATCCTA 57.003 29.630 0.00 0.00 39.85 2.94
4450 4525 6.583912 TTCTCGCATTTTTAGAATCCTACG 57.416 37.500 0.00 0.00 0.00 3.51
4451 4526 5.898174 TCTCGCATTTTTAGAATCCTACGA 58.102 37.500 0.00 0.00 0.00 3.43
4452 4527 6.334989 TCTCGCATTTTTAGAATCCTACGAA 58.665 36.000 0.00 0.00 0.00 3.85
4453 4528 6.984474 TCTCGCATTTTTAGAATCCTACGAAT 59.016 34.615 0.00 0.00 0.00 3.34
4454 4529 7.169308 TCTCGCATTTTTAGAATCCTACGAATC 59.831 37.037 0.00 0.00 0.00 2.52
4455 4530 6.759356 TCGCATTTTTAGAATCCTACGAATCA 59.241 34.615 0.00 0.00 0.00 2.57
4456 4531 7.279090 TCGCATTTTTAGAATCCTACGAATCAA 59.721 33.333 0.00 0.00 0.00 2.57
4457 4532 7.908082 CGCATTTTTAGAATCCTACGAATCAAA 59.092 33.333 0.00 0.00 0.00 2.69
4458 4533 9.226345 GCATTTTTAGAATCCTACGAATCAAAG 57.774 33.333 0.00 0.00 0.00 2.77
4461 4536 8.718102 TTTTAGAATCCTACGAATCAAAGAGG 57.282 34.615 0.00 0.00 0.00 3.69
4462 4537 4.698575 AGAATCCTACGAATCAAAGAGGC 58.301 43.478 0.00 0.00 0.00 4.70
4463 4538 2.981859 TCCTACGAATCAAAGAGGCC 57.018 50.000 0.00 0.00 0.00 5.19
4464 4539 1.485066 TCCTACGAATCAAAGAGGCCC 59.515 52.381 0.00 0.00 0.00 5.80
4465 4540 1.486726 CCTACGAATCAAAGAGGCCCT 59.513 52.381 0.00 0.00 0.00 5.19
4466 4541 2.698797 CCTACGAATCAAAGAGGCCCTA 59.301 50.000 0.00 0.00 0.00 3.53
4467 4542 3.134081 CCTACGAATCAAAGAGGCCCTAA 59.866 47.826 0.00 0.00 0.00 2.69
4468 4543 2.987232 ACGAATCAAAGAGGCCCTAAC 58.013 47.619 0.00 0.00 0.00 2.34
4469 4544 2.304761 ACGAATCAAAGAGGCCCTAACA 59.695 45.455 0.00 0.00 0.00 2.41
4470 4545 3.054361 ACGAATCAAAGAGGCCCTAACAT 60.054 43.478 0.00 0.00 0.00 2.71
4471 4546 3.313526 CGAATCAAAGAGGCCCTAACATG 59.686 47.826 0.00 0.00 0.00 3.21
4472 4547 4.273318 GAATCAAAGAGGCCCTAACATGT 58.727 43.478 0.00 0.00 0.00 3.21
4473 4548 3.806949 TCAAAGAGGCCCTAACATGTT 57.193 42.857 16.68 16.68 0.00 2.71
4474 4549 4.112634 TCAAAGAGGCCCTAACATGTTT 57.887 40.909 17.78 0.00 0.00 2.83
4475 4550 4.479158 TCAAAGAGGCCCTAACATGTTTT 58.521 39.130 17.78 0.00 0.00 2.43
4476 4551 4.280677 TCAAAGAGGCCCTAACATGTTTTG 59.719 41.667 17.78 11.44 0.00 2.44
4477 4552 3.806949 AGAGGCCCTAACATGTTTTGA 57.193 42.857 17.78 0.00 0.00 2.69
4478 4553 3.690460 AGAGGCCCTAACATGTTTTGAG 58.310 45.455 17.78 8.14 0.00 3.02
4479 4554 3.074538 AGAGGCCCTAACATGTTTTGAGT 59.925 43.478 17.78 0.00 0.00 3.41
4480 4555 4.288626 AGAGGCCCTAACATGTTTTGAGTA 59.711 41.667 17.78 0.00 0.00 2.59
4481 4556 5.044846 AGAGGCCCTAACATGTTTTGAGTAT 60.045 40.000 17.78 0.00 0.00 2.12
4482 4557 5.193679 AGGCCCTAACATGTTTTGAGTATC 58.806 41.667 17.78 0.36 0.00 2.24
4483 4558 5.044846 AGGCCCTAACATGTTTTGAGTATCT 60.045 40.000 17.78 2.52 34.92 1.98
4484 4559 5.652452 GGCCCTAACATGTTTTGAGTATCTT 59.348 40.000 17.78 0.00 34.92 2.40
4485 4560 6.826741 GGCCCTAACATGTTTTGAGTATCTTA 59.173 38.462 17.78 0.00 34.92 2.10
4486 4561 7.338449 GGCCCTAACATGTTTTGAGTATCTTAA 59.662 37.037 17.78 0.00 34.92 1.85
4487 4562 8.903820 GCCCTAACATGTTTTGAGTATCTTAAT 58.096 33.333 17.78 0.00 34.92 1.40
4594 4669 7.451731 TCTTATATTTGTGAATGGAGGGAGT 57.548 36.000 0.00 0.00 0.00 3.85
4595 4670 8.561536 TCTTATATTTGTGAATGGAGGGAGTA 57.438 34.615 0.00 0.00 0.00 2.59
4596 4671 8.429641 TCTTATATTTGTGAATGGAGGGAGTAC 58.570 37.037 0.00 0.00 0.00 2.73
4597 4672 6.831664 ATATTTGTGAATGGAGGGAGTACT 57.168 37.500 0.00 0.00 0.00 2.73
4598 4673 7.931015 ATATTTGTGAATGGAGGGAGTACTA 57.069 36.000 0.00 0.00 0.00 1.82
4599 4674 5.677319 TTTGTGAATGGAGGGAGTACTAG 57.323 43.478 0.00 0.00 0.00 2.57
4600 4675 3.031736 TGTGAATGGAGGGAGTACTAGC 58.968 50.000 0.00 0.00 0.00 3.42
4601 4676 3.301274 GTGAATGGAGGGAGTACTAGCT 58.699 50.000 0.00 0.00 0.00 3.32
4602 4677 3.707102 GTGAATGGAGGGAGTACTAGCTT 59.293 47.826 0.00 0.00 0.00 3.74
4603 4678 4.894114 GTGAATGGAGGGAGTACTAGCTTA 59.106 45.833 0.00 0.00 0.00 3.09
4604 4679 5.363005 GTGAATGGAGGGAGTACTAGCTTAA 59.637 44.000 0.00 0.00 0.00 1.85
4605 4680 6.042208 GTGAATGGAGGGAGTACTAGCTTAAT 59.958 42.308 0.00 0.00 0.00 1.40
4606 4681 6.042093 TGAATGGAGGGAGTACTAGCTTAATG 59.958 42.308 0.00 0.00 0.00 1.90
4607 4682 3.641906 TGGAGGGAGTACTAGCTTAATGC 59.358 47.826 0.00 0.00 43.29 3.56
4608 4683 3.641906 GGAGGGAGTACTAGCTTAATGCA 59.358 47.826 0.00 0.00 45.94 3.96
4609 4684 4.501743 GGAGGGAGTACTAGCTTAATGCAC 60.502 50.000 0.00 0.00 45.94 4.57
4610 4685 4.030913 AGGGAGTACTAGCTTAATGCACA 58.969 43.478 0.00 0.00 45.94 4.57
4611 4686 4.120589 GGGAGTACTAGCTTAATGCACAC 58.879 47.826 0.00 0.00 45.94 3.82
4612 4687 3.797256 GGAGTACTAGCTTAATGCACACG 59.203 47.826 0.00 0.00 45.94 4.49
4613 4688 4.421948 GAGTACTAGCTTAATGCACACGT 58.578 43.478 0.00 0.00 45.94 4.49
4614 4689 4.174009 AGTACTAGCTTAATGCACACGTG 58.826 43.478 15.48 15.48 45.94 4.49
4615 4690 3.313012 ACTAGCTTAATGCACACGTGA 57.687 42.857 25.01 0.00 45.94 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 9.382275 GTTGTGAGGATGGCAATTTTATTTATT 57.618 29.630 0.00 0.00 0.00 1.40
124 125 8.538701 TGTTGTGAGGATGGCAATTTTATTTAT 58.461 29.630 0.00 0.00 0.00 1.40
129 130 5.510520 GGTTGTTGTGAGGATGGCAATTTTA 60.511 40.000 0.00 0.00 0.00 1.52
158 159 3.003275 ACAAGACACACGTTTTATGGCTG 59.997 43.478 0.00 0.00 30.00 4.85
159 160 3.211045 ACAAGACACACGTTTTATGGCT 58.789 40.909 0.00 0.00 31.10 4.75
171 172 1.545428 GGAAGGGCATGACAAGACACA 60.545 52.381 0.00 0.00 0.00 3.72
202 205 4.695217 TTTGGGAAATGTTATCGTGCTC 57.305 40.909 0.00 0.00 0.00 4.26
208 211 6.756542 GCCTGTATGTTTTGGGAAATGTTATC 59.243 38.462 0.00 0.00 0.00 1.75
255 258 2.126467 TGCGTACGACTTTTGTACCAC 58.874 47.619 21.65 0.00 39.16 4.16
288 291 5.334105 CGGCATTATTCCTAATTCCTTCGTG 60.334 44.000 0.00 0.00 30.86 4.35
471 474 7.873505 ACAATAGAACAAGAGAGGAGTAAACAC 59.126 37.037 0.00 0.00 0.00 3.32
580 585 1.534235 AAGAGGCGACAGGTGGTCT 60.534 57.895 0.00 0.00 44.68 3.85
659 664 1.342819 AGCGGGAAGACTGATATGAGC 59.657 52.381 0.00 0.00 0.00 4.26
701 706 1.600485 GGCGAAACCGAGAGAAAAACA 59.400 47.619 0.00 0.00 0.00 2.83
752 761 3.591527 AGGAACAAGGAGAGAGAGAGAGA 59.408 47.826 0.00 0.00 0.00 3.10
753 762 3.947834 GAGGAACAAGGAGAGAGAGAGAG 59.052 52.174 0.00 0.00 0.00 3.20
754 763 3.591527 AGAGGAACAAGGAGAGAGAGAGA 59.408 47.826 0.00 0.00 0.00 3.10
755 764 3.968265 AGAGGAACAAGGAGAGAGAGAG 58.032 50.000 0.00 0.00 0.00 3.20
756 765 4.324719 GGTAGAGGAACAAGGAGAGAGAGA 60.325 50.000 0.00 0.00 0.00 3.10
757 766 3.951680 GGTAGAGGAACAAGGAGAGAGAG 59.048 52.174 0.00 0.00 0.00 3.20
758 767 3.309265 GGGTAGAGGAACAAGGAGAGAGA 60.309 52.174 0.00 0.00 0.00 3.10
759 768 3.028130 GGGTAGAGGAACAAGGAGAGAG 58.972 54.545 0.00 0.00 0.00 3.20
760 769 2.620886 CGGGTAGAGGAACAAGGAGAGA 60.621 54.545 0.00 0.00 0.00 3.10
761 770 1.751924 CGGGTAGAGGAACAAGGAGAG 59.248 57.143 0.00 0.00 0.00 3.20
762 771 1.076677 ACGGGTAGAGGAACAAGGAGA 59.923 52.381 0.00 0.00 0.00 3.71
763 772 1.477295 GACGGGTAGAGGAACAAGGAG 59.523 57.143 0.00 0.00 0.00 3.69
764 773 1.076677 AGACGGGTAGAGGAACAAGGA 59.923 52.381 0.00 0.00 0.00 3.36
765 774 1.477295 GAGACGGGTAGAGGAACAAGG 59.523 57.143 0.00 0.00 0.00 3.61
807 816 2.434359 CGGAGGAGTTGGGCGAAC 60.434 66.667 3.99 3.99 34.40 3.95
895 904 2.835431 TGGTTGGCGTTGGTTGGG 60.835 61.111 0.00 0.00 0.00 4.12
1260 1290 2.424733 GGTGAGGAGCCGGTAGTCC 61.425 68.421 1.90 7.47 0.00 3.85
1711 1741 6.741358 CCAGCGTTTTTATTAGTTGAGCTAAC 59.259 38.462 0.00 0.00 41.93 2.34
1811 1850 7.732222 AATCTGGCAAACATTAATCCCTTAA 57.268 32.000 0.00 0.00 0.00 1.85
1812 1851 7.732222 AAATCTGGCAAACATTAATCCCTTA 57.268 32.000 0.00 0.00 0.00 2.69
1813 1852 6.625532 AAATCTGGCAAACATTAATCCCTT 57.374 33.333 0.00 0.00 0.00 3.95
1815 1854 6.098266 ACCTAAATCTGGCAAACATTAATCCC 59.902 38.462 0.00 0.00 0.00 3.85
1816 1855 7.112452 ACCTAAATCTGGCAAACATTAATCC 57.888 36.000 0.00 0.00 0.00 3.01
1817 1856 8.352942 CCTACCTAAATCTGGCAAACATTAATC 58.647 37.037 0.00 0.00 0.00 1.75
1856 1895 1.764571 TAAAGACACGGGTGCTGCCT 61.765 55.000 0.00 0.00 37.43 4.75
1857 1896 0.887387 TTAAAGACACGGGTGCTGCC 60.887 55.000 0.00 0.00 0.00 4.85
1858 1897 1.165270 ATTAAAGACACGGGTGCTGC 58.835 50.000 0.00 0.00 0.00 5.25
1859 1898 3.365969 GGAAATTAAAGACACGGGTGCTG 60.366 47.826 0.00 0.00 0.00 4.41
1860 1899 2.817844 GGAAATTAAAGACACGGGTGCT 59.182 45.455 0.00 0.00 0.00 4.40
1861 1900 2.554893 TGGAAATTAAAGACACGGGTGC 59.445 45.455 0.00 0.00 0.00 5.01
1862 1901 4.436852 CGATGGAAATTAAAGACACGGGTG 60.437 45.833 0.00 0.00 0.00 4.61
1863 1902 3.687698 CGATGGAAATTAAAGACACGGGT 59.312 43.478 0.00 0.00 0.00 5.28
1964 2019 3.773119 AGGCCACTAATTAGACGAGGAAA 59.227 43.478 19.38 0.00 0.00 3.13
1970 2025 4.390909 ACGAAAAAGGCCACTAATTAGACG 59.609 41.667 19.38 9.21 0.00 4.18
1971 2026 5.874895 ACGAAAAAGGCCACTAATTAGAC 57.125 39.130 19.38 7.76 0.00 2.59
2017 2072 6.579666 AACTACTCCTACGTGTTGATTACA 57.420 37.500 0.00 0.00 0.00 2.41
2121 2176 6.923508 CGCAACTGGAAGATTATGACAGTATA 59.076 38.462 0.00 0.00 41.15 1.47
2123 2178 5.109210 CGCAACTGGAAGATTATGACAGTA 58.891 41.667 0.00 0.00 41.15 2.74
2156 2212 5.119931 TGTGTAGATTGTTGCATGGTTTC 57.880 39.130 0.00 0.00 0.00 2.78
2157 2213 5.726980 ATGTGTAGATTGTTGCATGGTTT 57.273 34.783 0.00 0.00 0.00 3.27
2158 2214 5.726980 AATGTGTAGATTGTTGCATGGTT 57.273 34.783 0.00 0.00 0.00 3.67
2159 2215 5.726980 AAATGTGTAGATTGTTGCATGGT 57.273 34.783 0.00 0.00 0.00 3.55
2181 2238 8.859517 ACGAAAATCAAAATTAGGACGAAAAA 57.140 26.923 0.00 0.00 0.00 1.94
2743 2800 3.195698 GCCGGTGTCCTCGAATGC 61.196 66.667 1.90 0.00 0.00 3.56
2745 2802 2.830704 GAACGCCGGTGTCCTCGAAT 62.831 60.000 23.19 2.98 0.00 3.34
2814 2871 1.300465 CTCCACGATCTCCGGCATG 60.300 63.158 0.00 0.00 43.93 4.06
3336 3393 2.733593 GAGTTGAGGAACGCGCGT 60.734 61.111 32.73 32.73 37.15 6.01
3637 3694 8.754080 TCAAAGAACCCAAAGAAAAGAATGTAA 58.246 29.630 0.00 0.00 0.00 2.41
3750 3815 1.629043 TTTGGTGCGGAGAGAGTACT 58.371 50.000 0.00 0.00 0.00 2.73
3757 3822 4.116961 CGTCTTATATTTTGGTGCGGAGA 58.883 43.478 0.00 0.00 0.00 3.71
3763 3828 7.381139 ACTGCAAAAACGTCTTATATTTTGGTG 59.619 33.333 17.78 0.40 41.02 4.17
3764 3829 7.430441 ACTGCAAAAACGTCTTATATTTTGGT 58.570 30.769 17.78 8.90 41.02 3.67
3765 3830 7.867445 ACTGCAAAAACGTCTTATATTTTGG 57.133 32.000 17.78 8.43 41.02 3.28
3766 3831 8.963130 TGAACTGCAAAAACGTCTTATATTTTG 58.037 29.630 13.82 13.82 42.66 2.44
3767 3832 9.522804 TTGAACTGCAAAAACGTCTTATATTTT 57.477 25.926 0.00 0.00 32.46 1.82
3789 3854 7.664082 TTTTGCAGTTCAGTTCAAATTTGAA 57.336 28.000 26.01 26.01 44.31 2.69
3790 3855 7.517321 GTTTTTGCAGTTCAGTTCAAATTTGA 58.483 30.769 16.91 16.91 34.92 2.69
3791 3856 6.462323 CGTTTTTGCAGTTCAGTTCAAATTTG 59.538 34.615 12.15 12.15 0.00 2.32
3792 3857 6.147000 ACGTTTTTGCAGTTCAGTTCAAATTT 59.853 30.769 0.00 0.00 0.00 1.82
3793 3858 5.637387 ACGTTTTTGCAGTTCAGTTCAAATT 59.363 32.000 0.00 0.00 0.00 1.82
3794 3859 5.167845 ACGTTTTTGCAGTTCAGTTCAAAT 58.832 33.333 0.00 0.00 0.00 2.32
3795 3860 4.551388 ACGTTTTTGCAGTTCAGTTCAAA 58.449 34.783 0.00 0.00 0.00 2.69
3796 3861 4.083003 AGACGTTTTTGCAGTTCAGTTCAA 60.083 37.500 0.00 0.00 0.00 2.69
3797 3862 3.438781 AGACGTTTTTGCAGTTCAGTTCA 59.561 39.130 0.00 0.00 0.00 3.18
3798 3863 4.016113 AGACGTTTTTGCAGTTCAGTTC 57.984 40.909 0.00 0.00 0.00 3.01
3799 3864 4.434713 AAGACGTTTTTGCAGTTCAGTT 57.565 36.364 0.00 0.00 0.00 3.16
3800 3865 5.751243 ATAAGACGTTTTTGCAGTTCAGT 57.249 34.783 0.00 0.00 0.00 3.41
3801 3866 8.728088 AAATATAAGACGTTTTTGCAGTTCAG 57.272 30.769 0.00 0.00 0.00 3.02
3802 3867 8.963130 CAAAATATAAGACGTTTTTGCAGTTCA 58.037 29.630 7.67 0.00 33.75 3.18
3803 3868 8.424731 CCAAAATATAAGACGTTTTTGCAGTTC 58.575 33.333 13.03 0.00 37.60 3.01
3804 3869 7.923878 ACCAAAATATAAGACGTTTTTGCAGTT 59.076 29.630 13.03 0.00 37.60 3.16
3805 3870 7.430441 ACCAAAATATAAGACGTTTTTGCAGT 58.570 30.769 13.03 6.29 37.60 4.40
3806 3871 7.867445 ACCAAAATATAAGACGTTTTTGCAG 57.133 32.000 13.03 5.81 37.60 4.41
3812 3877 9.269453 GCCTCTATACCAAAATATAAGACGTTT 57.731 33.333 0.00 0.00 0.00 3.60
3813 3878 8.426489 TGCCTCTATACCAAAATATAAGACGTT 58.574 33.333 0.00 0.00 0.00 3.99
3814 3879 7.959175 TGCCTCTATACCAAAATATAAGACGT 58.041 34.615 0.00 0.00 0.00 4.34
3815 3880 8.088981 ACTGCCTCTATACCAAAATATAAGACG 58.911 37.037 0.00 0.00 0.00 4.18
3821 3886 9.507329 CAATGTACTGCCTCTATACCAAAATAT 57.493 33.333 0.00 0.00 0.00 1.28
3822 3887 7.444183 GCAATGTACTGCCTCTATACCAAAATA 59.556 37.037 0.00 0.00 36.25 1.40
3823 3888 6.263168 GCAATGTACTGCCTCTATACCAAAAT 59.737 38.462 0.00 0.00 36.25 1.82
3824 3889 5.588648 GCAATGTACTGCCTCTATACCAAAA 59.411 40.000 0.00 0.00 36.25 2.44
3825 3890 5.123227 GCAATGTACTGCCTCTATACCAAA 58.877 41.667 0.00 0.00 36.25 3.28
3826 3891 4.163268 TGCAATGTACTGCCTCTATACCAA 59.837 41.667 4.79 0.00 41.90 3.67
3827 3892 3.709141 TGCAATGTACTGCCTCTATACCA 59.291 43.478 4.79 0.00 41.90 3.25
3828 3893 4.336889 TGCAATGTACTGCCTCTATACC 57.663 45.455 4.79 0.00 41.90 2.73
3829 3894 4.212214 GCTTGCAATGTACTGCCTCTATAC 59.788 45.833 0.00 0.00 41.90 1.47
3830 3895 4.380531 GCTTGCAATGTACTGCCTCTATA 58.619 43.478 0.00 0.00 41.90 1.31
3831 3896 3.209410 GCTTGCAATGTACTGCCTCTAT 58.791 45.455 0.00 0.00 41.90 1.98
3832 3897 2.632377 GCTTGCAATGTACTGCCTCTA 58.368 47.619 0.00 0.00 41.90 2.43
3833 3898 1.457346 GCTTGCAATGTACTGCCTCT 58.543 50.000 0.00 0.00 41.90 3.69
3838 3903 2.708514 GCATACGCTTGCAATGTACTG 58.291 47.619 12.34 12.21 42.31 2.74
3871 3941 4.022416 GCAGGACAACAAACCACATCAATA 60.022 41.667 0.00 0.00 0.00 1.90
3894 3964 4.974721 ACTTTGCGGGCCACCAGG 62.975 66.667 4.39 0.53 36.13 4.45
3904 3974 2.355009 GGCCTGCACAACTTTGCG 60.355 61.111 0.00 0.00 46.20 4.85
3971 4041 4.202326 ACGAATTTACAGGTGGAGTTCACT 60.202 41.667 0.51 0.00 45.38 3.41
3972 4042 4.062991 ACGAATTTACAGGTGGAGTTCAC 58.937 43.478 0.00 0.00 45.34 3.18
4023 4098 5.855740 TTTTCGTTGGGTTGTTCCTTTAT 57.144 34.783 0.00 0.00 36.25 1.40
4032 4107 2.223386 ACACGTCATTTTCGTTGGGTTG 60.223 45.455 0.00 0.00 39.55 3.77
4034 4109 1.600485 GACACGTCATTTTCGTTGGGT 59.400 47.619 0.00 0.00 39.55 4.51
4052 4127 3.799281 ATGAGTAGCAGAGCAAGAGAC 57.201 47.619 0.00 0.00 0.00 3.36
4131 4206 2.775384 AGGAACCCATTTGGAGCGTATA 59.225 45.455 0.00 0.00 37.39 1.47
4147 4222 6.850555 AGTATATCGAGCCGTTATAAGGAAC 58.149 40.000 6.74 0.00 29.71 3.62
4184 4259 6.650120 TCCTCCAAAATACTATTGACTGGAC 58.350 40.000 4.47 0.00 0.00 4.02
4222 4297 8.268850 TGAAACAGCTAACATAGGAAGAATTC 57.731 34.615 0.00 0.00 46.67 2.17
4223 4298 8.814038 ATGAAACAGCTAACATAGGAAGAATT 57.186 30.769 0.00 0.00 0.00 2.17
4224 4299 8.814038 AATGAAACAGCTAACATAGGAAGAAT 57.186 30.769 0.00 0.00 0.00 2.40
4225 4300 7.882791 TGAATGAAACAGCTAACATAGGAAGAA 59.117 33.333 0.00 0.00 0.00 2.52
4226 4301 7.394016 TGAATGAAACAGCTAACATAGGAAGA 58.606 34.615 0.00 0.00 0.00 2.87
4227 4302 7.615582 TGAATGAAACAGCTAACATAGGAAG 57.384 36.000 0.00 0.00 0.00 3.46
4228 4303 7.994425 TTGAATGAAACAGCTAACATAGGAA 57.006 32.000 0.00 0.00 0.00 3.36
4229 4304 7.611467 ACATTGAATGAAACAGCTAACATAGGA 59.389 33.333 12.80 0.00 0.00 2.94
4230 4305 7.699391 CACATTGAATGAAACAGCTAACATAGG 59.301 37.037 12.80 0.00 0.00 2.57
4231 4306 8.453320 TCACATTGAATGAAACAGCTAACATAG 58.547 33.333 12.80 0.00 0.00 2.23
4232 4307 8.334263 TCACATTGAATGAAACAGCTAACATA 57.666 30.769 12.80 0.00 0.00 2.29
4233 4308 7.218228 TCACATTGAATGAAACAGCTAACAT 57.782 32.000 12.80 0.00 0.00 2.71
4234 4309 6.631971 TCACATTGAATGAAACAGCTAACA 57.368 33.333 12.80 0.00 0.00 2.41
4235 4310 7.274250 GGATTCACATTGAATGAAACAGCTAAC 59.726 37.037 12.80 0.00 46.20 2.34
4236 4311 7.177216 AGGATTCACATTGAATGAAACAGCTAA 59.823 33.333 12.80 0.00 46.20 3.09
4237 4312 6.660521 AGGATTCACATTGAATGAAACAGCTA 59.339 34.615 12.80 0.00 46.20 3.32
4238 4313 5.479375 AGGATTCACATTGAATGAAACAGCT 59.521 36.000 12.80 0.00 46.20 4.24
4239 4314 5.717119 AGGATTCACATTGAATGAAACAGC 58.283 37.500 12.80 0.00 46.20 4.40
4283 4358 7.775053 AATCCTGCTGGAAATAGTACAAAAA 57.225 32.000 17.04 0.00 46.80 1.94
4284 4359 7.669722 AGAAATCCTGCTGGAAATAGTACAAAA 59.330 33.333 17.04 0.00 46.80 2.44
4285 4360 7.175104 AGAAATCCTGCTGGAAATAGTACAAA 58.825 34.615 17.04 0.00 46.80 2.83
4286 4361 6.721318 AGAAATCCTGCTGGAAATAGTACAA 58.279 36.000 17.04 0.00 46.80 2.41
4287 4362 6.313519 AGAAATCCTGCTGGAAATAGTACA 57.686 37.500 17.04 0.00 46.80 2.90
4288 4363 6.425417 GCTAGAAATCCTGCTGGAAATAGTAC 59.575 42.308 17.04 1.45 46.80 2.73
4289 4364 6.099701 TGCTAGAAATCCTGCTGGAAATAGTA 59.900 38.462 17.04 11.95 46.80 1.82
4290 4365 5.104360 TGCTAGAAATCCTGCTGGAAATAGT 60.104 40.000 17.04 3.58 46.80 2.12
4291 4366 5.371526 TGCTAGAAATCCTGCTGGAAATAG 58.628 41.667 17.04 15.27 46.80 1.73
4292 4367 5.372343 TGCTAGAAATCCTGCTGGAAATA 57.628 39.130 17.04 6.39 46.80 1.40
4293 4368 4.240881 TGCTAGAAATCCTGCTGGAAAT 57.759 40.909 17.04 8.28 46.80 2.17
4294 4369 3.719268 TGCTAGAAATCCTGCTGGAAA 57.281 42.857 17.04 0.00 46.80 3.13
4295 4370 3.434167 GGATGCTAGAAATCCTGCTGGAA 60.434 47.826 17.04 0.00 46.80 3.53
4297 4372 2.502295 GGATGCTAGAAATCCTGCTGG 58.498 52.381 14.65 2.58 40.50 4.85
4303 4378 7.067981 ACAGATTTGAAAGGATGCTAGAAATCC 59.932 37.037 14.26 14.26 43.47 3.01
4304 4379 7.994194 ACAGATTTGAAAGGATGCTAGAAATC 58.006 34.615 13.35 13.35 0.00 2.17
4305 4380 7.951347 ACAGATTTGAAAGGATGCTAGAAAT 57.049 32.000 0.00 0.00 0.00 2.17
4306 4381 7.765695 AACAGATTTGAAAGGATGCTAGAAA 57.234 32.000 0.00 0.00 0.00 2.52
4307 4382 7.448161 TGAAACAGATTTGAAAGGATGCTAGAA 59.552 33.333 0.00 0.00 0.00 2.10
4308 4383 6.942005 TGAAACAGATTTGAAAGGATGCTAGA 59.058 34.615 0.00 0.00 0.00 2.43
4309 4384 7.149569 TGAAACAGATTTGAAAGGATGCTAG 57.850 36.000 0.00 0.00 0.00 3.42
4310 4385 7.523293 TTGAAACAGATTTGAAAGGATGCTA 57.477 32.000 0.00 0.00 0.00 3.49
4311 4386 6.409524 TTGAAACAGATTTGAAAGGATGCT 57.590 33.333 0.00 0.00 0.00 3.79
4312 4387 6.925165 TCTTTGAAACAGATTTGAAAGGATGC 59.075 34.615 10.45 0.00 44.50 3.91
4313 4388 8.876275 TTCTTTGAAACAGATTTGAAAGGATG 57.124 30.769 10.45 0.00 44.50 3.51
4314 4389 9.702494 GATTCTTTGAAACAGATTTGAAAGGAT 57.298 29.630 10.45 8.06 44.97 3.24
4315 4390 8.694540 TGATTCTTTGAAACAGATTTGAAAGGA 58.305 29.630 10.45 4.15 44.50 3.36
4316 4391 8.876275 TGATTCTTTGAAACAGATTTGAAAGG 57.124 30.769 10.45 0.00 44.50 3.11
4320 4395 9.820725 ACAAATGATTCTTTGAAACAGATTTGA 57.179 25.926 16.21 0.00 38.17 2.69
4347 4422 7.387397 GGGTTGTTTGATTGCATCATAGAAAAA 59.613 33.333 0.00 0.00 39.39 1.94
4348 4423 6.873076 GGGTTGTTTGATTGCATCATAGAAAA 59.127 34.615 0.00 0.00 39.39 2.29
4349 4424 6.014755 TGGGTTGTTTGATTGCATCATAGAAA 60.015 34.615 0.00 0.00 39.39 2.52
4350 4425 5.479724 TGGGTTGTTTGATTGCATCATAGAA 59.520 36.000 0.00 0.00 39.39 2.10
4351 4426 5.015515 TGGGTTGTTTGATTGCATCATAGA 58.984 37.500 0.00 0.00 39.39 1.98
4352 4427 5.327616 TGGGTTGTTTGATTGCATCATAG 57.672 39.130 0.00 0.00 39.39 2.23
4353 4428 5.735285 TTGGGTTGTTTGATTGCATCATA 57.265 34.783 0.00 0.00 39.39 2.15
4354 4429 4.620589 TTGGGTTGTTTGATTGCATCAT 57.379 36.364 0.00 0.00 39.39 2.45
4355 4430 4.412796 TTTGGGTTGTTTGATTGCATCA 57.587 36.364 0.00 0.00 37.55 3.07
4356 4431 5.469421 TGATTTTGGGTTGTTTGATTGCATC 59.531 36.000 0.00 0.00 0.00 3.91
4357 4432 5.374921 TGATTTTGGGTTGTTTGATTGCAT 58.625 33.333 0.00 0.00 0.00 3.96
4358 4433 4.774124 TGATTTTGGGTTGTTTGATTGCA 58.226 34.783 0.00 0.00 0.00 4.08
4359 4434 5.239087 ACATGATTTTGGGTTGTTTGATTGC 59.761 36.000 0.00 0.00 0.00 3.56
4360 4435 6.864360 ACATGATTTTGGGTTGTTTGATTG 57.136 33.333 0.00 0.00 0.00 2.67
4361 4436 7.016072 TCCTACATGATTTTGGGTTGTTTGATT 59.984 33.333 0.00 0.00 0.00 2.57
4362 4437 6.496565 TCCTACATGATTTTGGGTTGTTTGAT 59.503 34.615 0.00 0.00 0.00 2.57
4363 4438 5.835819 TCCTACATGATTTTGGGTTGTTTGA 59.164 36.000 0.00 0.00 0.00 2.69
4364 4439 6.095432 TCCTACATGATTTTGGGTTGTTTG 57.905 37.500 0.00 0.00 0.00 2.93
4365 4440 6.933514 ATCCTACATGATTTTGGGTTGTTT 57.066 33.333 0.00 0.00 0.00 2.83
4366 4441 6.496565 TCAATCCTACATGATTTTGGGTTGTT 59.503 34.615 0.00 0.00 39.26 2.83
4367 4442 6.015918 TCAATCCTACATGATTTTGGGTTGT 58.984 36.000 0.00 0.00 39.26 3.32
4368 4443 6.377996 TCTCAATCCTACATGATTTTGGGTTG 59.622 38.462 0.00 6.77 39.50 3.77
4369 4444 6.493166 TCTCAATCCTACATGATTTTGGGTT 58.507 36.000 0.00 0.00 32.71 4.11
4370 4445 6.078456 TCTCAATCCTACATGATTTTGGGT 57.922 37.500 0.00 0.00 32.71 4.51
4371 4446 8.696043 TTATCTCAATCCTACATGATTTTGGG 57.304 34.615 0.00 0.00 32.71 4.12
4372 4447 9.347240 ACTTATCTCAATCCTACATGATTTTGG 57.653 33.333 0.00 0.00 32.71 3.28
4378 4453 9.367160 TGTCATACTTATCTCAATCCTACATGA 57.633 33.333 0.00 0.00 0.00 3.07
4399 4474 8.961294 TGAAAAACAAAGGATTGAAATGTCAT 57.039 26.923 0.00 0.00 38.94 3.06
4400 4475 8.961294 ATGAAAAACAAAGGATTGAAATGTCA 57.039 26.923 0.00 0.00 38.94 3.58
4406 4481 9.624697 CGAGAATATGAAAAACAAAGGATTGAA 57.375 29.630 0.00 0.00 38.94 2.69
4407 4482 7.754924 GCGAGAATATGAAAAACAAAGGATTGA 59.245 33.333 0.00 0.00 38.94 2.57
4408 4483 7.541783 TGCGAGAATATGAAAAACAAAGGATTG 59.458 33.333 0.00 0.00 42.46 2.67
4409 4484 7.601856 TGCGAGAATATGAAAAACAAAGGATT 58.398 30.769 0.00 0.00 0.00 3.01
4410 4485 7.156876 TGCGAGAATATGAAAAACAAAGGAT 57.843 32.000 0.00 0.00 0.00 3.24
4411 4486 6.567687 TGCGAGAATATGAAAAACAAAGGA 57.432 33.333 0.00 0.00 0.00 3.36
4412 4487 7.816945 AATGCGAGAATATGAAAAACAAAGG 57.183 32.000 0.00 0.00 0.00 3.11
4420 4495 9.950680 GGATTCTAAAAATGCGAGAATATGAAA 57.049 29.630 0.00 0.00 39.46 2.69
4421 4496 9.342308 AGGATTCTAAAAATGCGAGAATATGAA 57.658 29.630 0.00 0.00 39.46 2.57
4422 4497 8.908786 AGGATTCTAAAAATGCGAGAATATGA 57.091 30.769 0.00 0.00 39.46 2.15
4424 4499 8.926710 CGTAGGATTCTAAAAATGCGAGAATAT 58.073 33.333 0.00 0.00 39.46 1.28
4425 4500 8.139350 TCGTAGGATTCTAAAAATGCGAGAATA 58.861 33.333 0.00 0.00 39.46 1.75
4426 4501 6.984474 TCGTAGGATTCTAAAAATGCGAGAAT 59.016 34.615 0.00 0.00 41.51 2.40
4427 4502 6.334989 TCGTAGGATTCTAAAAATGCGAGAA 58.665 36.000 0.00 0.00 33.90 2.87
4428 4503 5.898174 TCGTAGGATTCTAAAAATGCGAGA 58.102 37.500 0.00 0.00 0.00 4.04
4429 4504 6.583912 TTCGTAGGATTCTAAAAATGCGAG 57.416 37.500 0.00 0.00 0.00 5.03
4430 4505 6.759356 TGATTCGTAGGATTCTAAAAATGCGA 59.241 34.615 8.35 0.00 0.00 5.10
4431 4506 6.943981 TGATTCGTAGGATTCTAAAAATGCG 58.056 36.000 8.35 0.00 0.00 4.73
4432 4507 9.226345 CTTTGATTCGTAGGATTCTAAAAATGC 57.774 33.333 8.35 0.00 0.00 3.56
4435 4510 9.162764 CCTCTTTGATTCGTAGGATTCTAAAAA 57.837 33.333 8.35 1.96 0.00 1.94
4436 4511 7.280205 GCCTCTTTGATTCGTAGGATTCTAAAA 59.720 37.037 8.35 2.49 0.00 1.52
4437 4512 6.761714 GCCTCTTTGATTCGTAGGATTCTAAA 59.238 38.462 8.35 6.74 0.00 1.85
4438 4513 6.281405 GCCTCTTTGATTCGTAGGATTCTAA 58.719 40.000 8.35 6.50 0.00 2.10
4439 4514 5.221461 GGCCTCTTTGATTCGTAGGATTCTA 60.221 44.000 0.00 0.00 0.00 2.10
4440 4515 4.443598 GGCCTCTTTGATTCGTAGGATTCT 60.444 45.833 0.00 0.00 0.00 2.40
4441 4516 3.810386 GGCCTCTTTGATTCGTAGGATTC 59.190 47.826 0.00 1.32 0.00 2.52
4442 4517 3.433740 GGGCCTCTTTGATTCGTAGGATT 60.434 47.826 0.84 0.00 0.00 3.01
4443 4518 2.104963 GGGCCTCTTTGATTCGTAGGAT 59.895 50.000 0.84 0.00 0.00 3.24
4444 4519 1.485066 GGGCCTCTTTGATTCGTAGGA 59.515 52.381 0.84 0.00 0.00 2.94
4445 4520 1.486726 AGGGCCTCTTTGATTCGTAGG 59.513 52.381 0.00 0.00 0.00 3.18
4446 4521 2.990066 AGGGCCTCTTTGATTCGTAG 57.010 50.000 0.00 0.00 0.00 3.51
4447 4522 3.516300 TGTTAGGGCCTCTTTGATTCGTA 59.484 43.478 10.74 0.00 0.00 3.43
4448 4523 2.304761 TGTTAGGGCCTCTTTGATTCGT 59.695 45.455 10.74 0.00 0.00 3.85
4449 4524 2.985896 TGTTAGGGCCTCTTTGATTCG 58.014 47.619 10.74 0.00 0.00 3.34
4450 4525 4.273318 ACATGTTAGGGCCTCTTTGATTC 58.727 43.478 10.74 0.00 0.00 2.52
4451 4526 4.322057 ACATGTTAGGGCCTCTTTGATT 57.678 40.909 10.74 0.00 0.00 2.57
4452 4527 4.322057 AACATGTTAGGGCCTCTTTGAT 57.678 40.909 10.74 0.00 0.00 2.57
4453 4528 3.806949 AACATGTTAGGGCCTCTTTGA 57.193 42.857 10.74 0.00 0.00 2.69
4454 4529 4.280677 TCAAAACATGTTAGGGCCTCTTTG 59.719 41.667 10.74 9.27 0.00 2.77
4455 4530 4.479158 TCAAAACATGTTAGGGCCTCTTT 58.521 39.130 10.74 0.00 0.00 2.52
4456 4531 4.082125 CTCAAAACATGTTAGGGCCTCTT 58.918 43.478 10.74 0.00 0.00 2.85
4457 4532 3.074538 ACTCAAAACATGTTAGGGCCTCT 59.925 43.478 10.74 0.00 0.00 3.69
4458 4533 3.421844 ACTCAAAACATGTTAGGGCCTC 58.578 45.455 10.74 0.00 0.00 4.70
4459 4534 3.525800 ACTCAAAACATGTTAGGGCCT 57.474 42.857 12.58 12.58 0.00 5.19
4460 4535 5.193679 AGATACTCAAAACATGTTAGGGCC 58.806 41.667 12.39 0.00 0.00 5.80
4461 4536 6.759497 AAGATACTCAAAACATGTTAGGGC 57.241 37.500 12.39 0.43 0.00 5.19
4568 4643 9.170890 ACTCCCTCCATTCACAAATATAAGATA 57.829 33.333 0.00 0.00 0.00 1.98
4569 4644 8.050316 ACTCCCTCCATTCACAAATATAAGAT 57.950 34.615 0.00 0.00 0.00 2.40
4570 4645 7.451731 ACTCCCTCCATTCACAAATATAAGA 57.548 36.000 0.00 0.00 0.00 2.10
4571 4646 8.432805 AGTACTCCCTCCATTCACAAATATAAG 58.567 37.037 0.00 0.00 0.00 1.73
4572 4647 8.331931 AGTACTCCCTCCATTCACAAATATAA 57.668 34.615 0.00 0.00 0.00 0.98
4573 4648 7.931015 AGTACTCCCTCCATTCACAAATATA 57.069 36.000 0.00 0.00 0.00 0.86
4574 4649 6.831664 AGTACTCCCTCCATTCACAAATAT 57.168 37.500 0.00 0.00 0.00 1.28
4575 4650 6.183360 GCTAGTACTCCCTCCATTCACAAATA 60.183 42.308 0.00 0.00 0.00 1.40
4576 4651 5.396884 GCTAGTACTCCCTCCATTCACAAAT 60.397 44.000 0.00 0.00 0.00 2.32
4577 4652 4.081087 GCTAGTACTCCCTCCATTCACAAA 60.081 45.833 0.00 0.00 0.00 2.83
4578 4653 3.451178 GCTAGTACTCCCTCCATTCACAA 59.549 47.826 0.00 0.00 0.00 3.33
4579 4654 3.031736 GCTAGTACTCCCTCCATTCACA 58.968 50.000 0.00 0.00 0.00 3.58
4580 4655 3.301274 AGCTAGTACTCCCTCCATTCAC 58.699 50.000 0.00 0.00 0.00 3.18
4581 4656 3.689872 AGCTAGTACTCCCTCCATTCA 57.310 47.619 0.00 0.00 0.00 2.57
4582 4657 6.459923 CATTAAGCTAGTACTCCCTCCATTC 58.540 44.000 0.00 0.00 0.00 2.67
4583 4658 5.221742 GCATTAAGCTAGTACTCCCTCCATT 60.222 44.000 0.00 0.00 41.15 3.16
4584 4659 4.284746 GCATTAAGCTAGTACTCCCTCCAT 59.715 45.833 0.00 0.00 41.15 3.41
4585 4660 3.641906 GCATTAAGCTAGTACTCCCTCCA 59.358 47.826 0.00 0.00 41.15 3.86
4586 4661 3.641906 TGCATTAAGCTAGTACTCCCTCC 59.358 47.826 0.00 0.00 45.94 4.30
4587 4662 4.099573 TGTGCATTAAGCTAGTACTCCCTC 59.900 45.833 0.00 0.00 45.94 4.30
4588 4663 4.030913 TGTGCATTAAGCTAGTACTCCCT 58.969 43.478 0.00 0.00 45.94 4.20
4589 4664 4.120589 GTGTGCATTAAGCTAGTACTCCC 58.879 47.826 0.00 0.00 45.94 4.30
4590 4665 3.797256 CGTGTGCATTAAGCTAGTACTCC 59.203 47.826 0.00 0.00 45.94 3.85
4591 4666 4.265556 CACGTGTGCATTAAGCTAGTACTC 59.734 45.833 7.58 0.00 45.94 2.59
4592 4667 4.082408 TCACGTGTGCATTAAGCTAGTACT 60.082 41.667 16.51 0.00 45.94 2.73
4593 4668 4.171005 TCACGTGTGCATTAAGCTAGTAC 58.829 43.478 16.51 0.00 45.94 2.73
4594 4669 4.443913 TCACGTGTGCATTAAGCTAGTA 57.556 40.909 16.51 0.00 45.94 1.82
4595 4670 3.313012 TCACGTGTGCATTAAGCTAGT 57.687 42.857 16.51 0.00 45.94 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.