Multiple sequence alignment - TraesCS3A01G222100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G222100 chr3A 100.000 6206 0 0 1661 7866 414819771 414813566 0.000000e+00 11461.0
1 TraesCS3A01G222100 chr3A 100.000 1163 0 0 1 1163 414821431 414820269 0.000000e+00 2148.0
2 TraesCS3A01G222100 chr3B 93.684 5383 232 45 2181 7510 404831520 404826193 0.000000e+00 7958.0
3 TraesCS3A01G222100 chr3B 98.259 517 8 1 1661 2177 404832874 404832359 0.000000e+00 904.0
4 TraesCS3A01G222100 chr3B 92.149 484 6 6 681 1163 404833393 404832941 0.000000e+00 654.0
5 TraesCS3A01G222100 chr3B 88.104 538 62 2 4 540 404834401 404833865 8.610000e-179 638.0
6 TraesCS3A01G222100 chr3B 92.199 141 5 3 551 686 404833558 404833419 2.240000e-45 195.0
7 TraesCS3A01G222100 chr3B 91.250 80 6 1 7549 7628 404826196 404826118 3.000000e-19 108.0
8 TraesCS3A01G222100 chr3B 84.615 104 10 5 69 169 59038359 59038459 1.810000e-16 99.0
9 TraesCS3A01G222100 chr3D 93.496 5381 227 48 2178 7510 315479380 315484685 0.000000e+00 7884.0
10 TraesCS3A01G222100 chr3D 96.429 532 14 5 1661 2190 315475334 315475862 0.000000e+00 872.0
11 TraesCS3A01G222100 chr3D 97.582 455 5 2 709 1163 315474819 315475267 0.000000e+00 774.0
12 TraesCS3A01G222100 chr3D 95.238 273 13 0 1 273 315474460 315474732 4.360000e-117 433.0
13 TraesCS3A01G222100 chr3D 92.453 159 9 2 3225 3383 288550614 288550459 2.860000e-54 224.0
14 TraesCS3A01G222100 chr3D 81.148 244 22 12 7625 7866 315484877 315485098 2.920000e-39 174.0
15 TraesCS3A01G222100 chr3D 88.750 80 8 1 7549 7628 315484682 315484760 6.500000e-16 97.1
16 TraesCS3A01G222100 chr5B 77.650 434 80 13 74 494 398070576 398070147 1.690000e-61 248.0
17 TraesCS3A01G222100 chr5B 84.043 94 8 6 4234 4325 574961390 574961302 5.060000e-12 84.2
18 TraesCS3A01G222100 chr2D 90.449 178 13 2 3223 3400 79056162 79056335 1.710000e-56 231.0
19 TraesCS3A01G222100 chr2D 87.166 187 19 3 3208 3392 335689881 335689698 2.880000e-49 207.0
20 TraesCS3A01G222100 chr2A 88.587 184 17 2 3217 3400 79315994 79316173 3.700000e-53 220.0
21 TraesCS3A01G222100 chr2A 91.772 158 10 1 3229 3386 141506470 141506316 4.780000e-52 217.0
22 TraesCS3A01G222100 chr2A 87.166 187 19 3 3208 3392 446072230 446072047 2.880000e-49 207.0
23 TraesCS3A01G222100 chr2A 84.906 106 13 3 65 169 355452186 355452289 3.880000e-18 104.0
24 TraesCS3A01G222100 chr2A 89.831 59 5 1 10 68 85812428 85812371 3.040000e-09 75.0
25 TraesCS3A01G222100 chr2A 92.157 51 4 0 7575 7625 227622684 227622734 1.090000e-08 73.1
26 TraesCS3A01G222100 chr2B 87.701 187 18 3 3208 3392 403702457 403702274 6.180000e-51 213.0
27 TraesCS3A01G222100 chr2B 84.615 91 7 4 4243 4326 645479774 645479684 5.060000e-12 84.2
28 TraesCS3A01G222100 chr7B 79.141 326 53 9 68 380 456925890 456926213 2.220000e-50 211.0
29 TraesCS3A01G222100 chr7B 86.765 68 5 4 4251 4316 392853832 392853897 1.090000e-08 73.1
30 TraesCS3A01G222100 chr7B 88.136 59 7 0 10 68 52612482 52612424 3.940000e-08 71.3
31 TraesCS3A01G222100 chr1A 76.119 268 55 8 183 442 575012710 575012444 1.780000e-26 132.0
32 TraesCS3A01G222100 chr1A 97.727 44 1 0 7585 7628 320485676 320485633 8.460000e-10 76.8
33 TraesCS3A01G222100 chr1A 97.727 44 1 0 7585 7628 551582345 551582302 8.460000e-10 76.8
34 TraesCS3A01G222100 chr7D 86.275 102 12 2 69 169 632213499 632213399 8.350000e-20 110.0
35 TraesCS3A01G222100 chr7D 81.301 123 17 3 4218 4334 617070558 617070436 2.340000e-15 95.3
36 TraesCS3A01G222100 chr7D 85.000 80 8 1 4235 4310 608098308 608098229 2.350000e-10 78.7
37 TraesCS3A01G222100 chr7D 81.132 106 8 9 65 169 1469550 1469456 3.040000e-09 75.0
38 TraesCS3A01G222100 chr4A 86.275 102 12 2 69 169 670841030 670841130 8.350000e-20 110.0
39 TraesCS3A01G222100 chr6A 84.946 93 9 2 4236 4324 602667398 602667307 1.090000e-13 89.8
40 TraesCS3A01G222100 chr7A 90.625 64 6 0 5 68 229628145 229628208 1.410000e-12 86.1
41 TraesCS3A01G222100 chr7A 83.333 90 10 4 4239 4326 155989198 155989112 2.350000e-10 78.7
42 TraesCS3A01G222100 chr7A 97.778 45 1 0 7584 7628 693453418 693453462 2.350000e-10 78.7
43 TraesCS3A01G222100 chr6B 95.652 46 2 0 7583 7628 487209572 487209527 3.040000e-09 75.0
44 TraesCS3A01G222100 chr4D 95.652 46 2 0 7583 7628 402528010 402527965 3.040000e-09 75.0
45 TraesCS3A01G222100 chr5A 89.655 58 5 1 7584 7640 326719615 326719672 1.090000e-08 73.1
46 TraesCS3A01G222100 chrUn 90.741 54 4 1 15 68 354327248 354327196 3.940000e-08 71.3
47 TraesCS3A01G222100 chr1D 89.286 56 6 0 5 60 262245612 262245557 3.940000e-08 71.3
48 TraesCS3A01G222100 chr6D 85.294 68 9 1 5 71 38536314 38536381 1.420000e-07 69.4
49 TraesCS3A01G222100 chr6D 91.304 46 4 0 1 46 284503364 284503409 6.590000e-06 63.9
50 TraesCS3A01G222100 chr5D 86.885 61 5 2 4257 4317 136352273 136352330 1.830000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G222100 chr3A 414813566 414821431 7865 True 6804.500000 11461 100.000000 1 7866 2 chr3A.!!$R1 7865
1 TraesCS3A01G222100 chr3B 404826118 404834401 8283 True 1742.833333 7958 92.607500 4 7628 6 chr3B.!!$R1 7624
2 TraesCS3A01G222100 chr3D 315474460 315485098 10638 False 1705.683333 7884 92.107167 1 7866 6 chr3D.!!$F1 7865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 457 0.320683 TGTGAGCATTGAGTCCACCG 60.321 55.000 0.00 0.00 0.00 4.94 F
444 459 0.396435 TGAGCATTGAGTCCACCGTT 59.604 50.000 0.00 0.00 0.00 4.44 F
2380 6299 0.610174 TTGAGATGCCTCGTGCTCTT 59.390 50.000 0.00 0.00 42.33 2.85 F
2619 6538 1.547372 CTTGGGGCTTGATTGTTCCTG 59.453 52.381 0.00 0.00 0.00 3.86 F
3507 7429 1.692411 AAGCAAAAGCTTCTCCGGTT 58.308 45.000 0.00 0.00 0.00 4.44 F
4092 8016 1.348036 ACTGTACTGTCTTTCCTGGGC 59.652 52.381 0.00 0.00 0.00 5.36 F
4170 8094 2.221169 TGTTTGGTGCATGTCAGTCTC 58.779 47.619 0.00 0.00 0.00 3.36 F
5524 9456 1.226746 GTGAGGACTTTTCACCACCG 58.773 55.000 0.00 0.00 39.17 4.94 F
6234 10193 0.506080 GCGTTCATAGCTGCGATGAG 59.494 55.000 21.57 14.23 34.85 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2216 6134 0.517316 CTCGCCCAAGTAACTTGCAC 59.483 55.000 0.00 0.00 39.85 4.57 R
2417 6336 0.533032 TTCGTGACACGGCCATATCA 59.467 50.000 26.55 2.84 42.81 2.15 R
3661 7583 0.550914 ACCTGCACAGTCTTTCCCAA 59.449 50.000 0.00 0.00 0.00 4.12 R
3675 7597 2.292267 CATAATGTGGTCCTCACCTGC 58.708 52.381 0.00 0.00 45.48 4.85 R
5297 9224 0.733729 GAAGCATGCAAGAGAGCCTG 59.266 55.000 21.98 0.00 33.92 4.85 R
5413 9340 1.227205 CAGCCCAGATCGAGCAGAC 60.227 63.158 2.38 0.00 0.00 3.51 R
5926 9865 1.539065 CGAGGTATGCATGGGACTGAC 60.539 57.143 10.16 0.00 0.00 3.51 R
6715 10674 0.458669 CAGGAAGCACATGGCCATTC 59.541 55.000 17.92 11.75 46.50 2.67 R
7693 11794 0.877071 TCCTGACAGACGAACGGTAC 59.123 55.000 3.32 0.00 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 8.880878 ATGTTGTTTTACCTGTTAACCATTTC 57.119 30.769 2.48 0.00 0.00 2.17
172 173 9.683069 ACAATTTGAATCTGATGTTGTTTACTC 57.317 29.630 2.79 0.00 0.00 2.59
240 241 2.665052 GCGTACGATCCGTCTTTTTCTT 59.335 45.455 21.65 0.00 41.54 2.52
273 288 4.094294 TCGATTCGGATTGGAAATGAACAC 59.906 41.667 6.18 0.00 0.00 3.32
274 289 4.094887 CGATTCGGATTGGAAATGAACACT 59.905 41.667 0.00 0.00 0.00 3.55
275 290 5.391950 CGATTCGGATTGGAAATGAACACTT 60.392 40.000 0.00 0.00 0.00 3.16
276 291 5.371115 TTCGGATTGGAAATGAACACTTC 57.629 39.130 0.00 0.00 0.00 3.01
277 292 4.393834 TCGGATTGGAAATGAACACTTCA 58.606 39.130 0.00 0.00 45.01 3.02
278 293 4.455533 TCGGATTGGAAATGAACACTTCAG 59.544 41.667 0.00 0.00 43.98 3.02
279 294 4.488879 GGATTGGAAATGAACACTTCAGC 58.511 43.478 0.00 0.00 43.98 4.26
280 295 4.022068 GGATTGGAAATGAACACTTCAGCA 60.022 41.667 0.00 0.00 43.98 4.41
281 296 4.998671 TTGGAAATGAACACTTCAGCAA 57.001 36.364 0.00 0.00 43.98 3.91
282 297 4.998671 TGGAAATGAACACTTCAGCAAA 57.001 36.364 0.00 0.00 43.98 3.68
283 298 5.336150 TGGAAATGAACACTTCAGCAAAA 57.664 34.783 0.00 0.00 43.98 2.44
284 299 5.916318 TGGAAATGAACACTTCAGCAAAAT 58.084 33.333 0.00 0.00 43.98 1.82
285 300 5.984926 TGGAAATGAACACTTCAGCAAAATC 59.015 36.000 0.00 0.00 43.98 2.17
286 301 5.984926 GGAAATGAACACTTCAGCAAAATCA 59.015 36.000 0.00 0.00 43.98 2.57
287 302 6.479660 GGAAATGAACACTTCAGCAAAATCAA 59.520 34.615 0.00 0.00 43.98 2.57
293 308 5.673514 ACACTTCAGCAAAATCAAATTGGT 58.326 33.333 0.00 0.00 38.93 3.67
317 332 6.812160 GTGACGAAAGAAACTGTCTATACCAT 59.188 38.462 0.00 0.00 34.56 3.55
326 341 4.871513 ACTGTCTATACCATGCATGTACG 58.128 43.478 24.58 12.42 0.00 3.67
339 354 0.964860 ATGTACGCATGGGCAAAGCA 60.965 50.000 10.10 2.57 41.24 3.91
341 356 0.526096 GTACGCATGGGCAAAGCATG 60.526 55.000 10.10 0.00 41.24 4.06
355 370 5.876460 GGCAAAGCATGATAGGAAAACAAAT 59.124 36.000 0.00 0.00 0.00 2.32
369 384 8.992835 AGGAAAACAAATTTCTCATCTTATGC 57.007 30.769 0.00 0.00 45.57 3.14
370 385 8.587608 AGGAAAACAAATTTCTCATCTTATGCA 58.412 29.630 0.00 0.00 45.57 3.96
388 403 2.037772 TGCAGAGAGAGAGGAAAACACC 59.962 50.000 0.00 0.00 0.00 4.16
437 452 6.253746 GTTGTGATTATGTGAGCATTGAGTC 58.746 40.000 0.00 0.00 36.58 3.36
442 457 0.320683 TGTGAGCATTGAGTCCACCG 60.321 55.000 0.00 0.00 0.00 4.94
444 459 0.396435 TGAGCATTGAGTCCACCGTT 59.604 50.000 0.00 0.00 0.00 4.44
447 462 0.727398 GCATTGAGTCCACCGTTAGC 59.273 55.000 0.00 0.00 0.00 3.09
452 467 1.593296 GAGTCCACCGTTAGCGAGGT 61.593 60.000 0.00 0.00 42.34 3.85
456 471 2.283388 ACCGTTAGCGAGGTGGGA 60.283 61.111 0.00 0.00 39.66 4.37
458 473 1.153628 CCGTTAGCGAGGTGGGAAG 60.154 63.158 0.00 0.00 41.33 3.46
459 474 1.810030 CGTTAGCGAGGTGGGAAGC 60.810 63.158 0.00 0.00 41.33 3.86
460 475 1.295423 GTTAGCGAGGTGGGAAGCA 59.705 57.895 0.00 0.00 0.00 3.91
467 483 2.939640 GCGAGGTGGGAAGCAAGATAAA 60.940 50.000 0.00 0.00 0.00 1.40
469 485 3.686016 GAGGTGGGAAGCAAGATAAACA 58.314 45.455 0.00 0.00 0.00 2.83
470 486 4.079253 GAGGTGGGAAGCAAGATAAACAA 58.921 43.478 0.00 0.00 0.00 2.83
478 494 5.458779 GGAAGCAAGATAAACAACAACACAC 59.541 40.000 0.00 0.00 0.00 3.82
481 497 7.270757 AGCAAGATAAACAACAACACACATA 57.729 32.000 0.00 0.00 0.00 2.29
482 498 7.362662 AGCAAGATAAACAACAACACACATAG 58.637 34.615 0.00 0.00 0.00 2.23
526 542 1.444933 TTTGGGTCCTGAGTCATGGT 58.555 50.000 0.00 0.00 0.00 3.55
531 547 2.158755 GGGTCCTGAGTCATGGTTATGG 60.159 54.545 0.00 0.00 34.97 2.74
540 556 3.118038 AGTCATGGTTATGGGCGTGTTAT 60.118 43.478 0.00 0.00 34.97 1.89
541 557 4.101898 AGTCATGGTTATGGGCGTGTTATA 59.898 41.667 0.00 0.00 34.97 0.98
542 558 5.001232 GTCATGGTTATGGGCGTGTTATAT 58.999 41.667 0.00 0.00 34.97 0.86
545 561 3.391626 TGGTTATGGGCGTGTTATATCCA 59.608 43.478 0.00 0.00 0.00 3.41
546 562 4.042311 TGGTTATGGGCGTGTTATATCCAT 59.958 41.667 0.00 0.00 40.78 3.41
547 563 5.248705 TGGTTATGGGCGTGTTATATCCATA 59.751 40.000 0.00 0.00 38.87 2.74
548 564 6.069905 TGGTTATGGGCGTGTTATATCCATAT 60.070 38.462 0.00 0.00 39.37 1.78
549 565 6.260050 GGTTATGGGCGTGTTATATCCATATG 59.740 42.308 0.00 0.00 39.37 1.78
550 566 5.692115 ATGGGCGTGTTATATCCATATGA 57.308 39.130 3.65 0.00 36.55 2.15
551 567 5.491323 TGGGCGTGTTATATCCATATGAA 57.509 39.130 3.65 0.00 0.00 2.57
553 569 6.299922 TGGGCGTGTTATATCCATATGAAAA 58.700 36.000 3.65 0.00 0.00 2.29
554 570 6.205853 TGGGCGTGTTATATCCATATGAAAAC 59.794 38.462 3.65 2.07 0.00 2.43
555 571 6.430000 GGGCGTGTTATATCCATATGAAAACT 59.570 38.462 3.65 0.00 0.00 2.66
557 573 9.162764 GGCGTGTTATATCCATATGAAAACTAT 57.837 33.333 3.65 0.00 0.00 2.12
678 994 5.937540 TCTTATTCTTTCCAAAGCGATCACA 59.062 36.000 0.00 0.00 35.99 3.58
679 995 6.599244 TCTTATTCTTTCCAAAGCGATCACAT 59.401 34.615 0.00 0.00 35.99 3.21
953 1301 1.233369 GGATTCGGGAGGAGGAGGA 59.767 63.158 0.00 0.00 0.00 3.71
1971 2319 5.892160 TCCATTTGAAGAGATTGCTTCTG 57.108 39.130 0.00 0.00 43.60 3.02
2131 2479 3.214328 GTCTCAACTGAACAATGGTGGT 58.786 45.455 0.00 0.00 0.00 4.16
2152 2500 4.704057 GGTCCATGAAAGAAAGCTTCTGAT 59.296 41.667 0.00 0.00 40.59 2.90
2161 2509 8.260114 TGAAAGAAAGCTTCTGATTTTTCCTTT 58.740 29.630 0.00 0.00 40.59 3.11
2178 2526 7.916914 TTTCCTTTATTGTCTAGCACTTACC 57.083 36.000 0.00 0.00 0.00 2.85
2202 6120 4.822685 TGCAATCTGTGGCCAATATTTT 57.177 36.364 7.24 0.00 0.00 1.82
2216 6134 5.916883 GCCAATATTTTCGGACAATGATCTG 59.083 40.000 0.00 0.00 0.00 2.90
2231 6149 3.411446 TGATCTGTGCAAGTTACTTGGG 58.589 45.455 24.13 2.82 41.31 4.12
2322 6241 2.414612 AGGAAGTTGGAACAGGTGGTA 58.585 47.619 0.00 0.00 42.39 3.25
2380 6299 0.610174 TTGAGATGCCTCGTGCTCTT 59.390 50.000 0.00 0.00 42.33 2.85
2391 6310 1.676384 GTGCTCTTCAGGCCTCACT 59.324 57.895 0.00 0.00 0.00 3.41
2456 6375 4.455606 GAACCATTAGATGCCAGCTTAGT 58.544 43.478 0.00 0.00 0.00 2.24
2619 6538 1.547372 CTTGGGGCTTGATTGTTCCTG 59.453 52.381 0.00 0.00 0.00 3.86
2677 6596 2.159170 ACTTGCTCGATTGCTCCTAGTC 60.159 50.000 0.00 0.00 0.00 2.59
2759 6678 2.027192 TCCTTACCTCAACACTGATGCC 60.027 50.000 0.00 0.00 0.00 4.40
2813 6732 4.518970 GTGTTTGTGTTAGATGATGGTGGT 59.481 41.667 0.00 0.00 0.00 4.16
2823 6742 2.024176 TGATGGTGGTGAGGTACTGT 57.976 50.000 0.00 0.00 41.55 3.55
2867 6786 3.763897 GACAATGGCTAGGGAATGTTTGT 59.236 43.478 0.00 0.00 0.00 2.83
3072 6991 3.427098 GGAACAGTGCGTATTTAAAGCCC 60.427 47.826 0.00 0.00 0.00 5.19
3081 7000 3.687264 CGTATTTAAAGCCCCACCCTCAT 60.687 47.826 0.00 0.00 0.00 2.90
3112 7031 5.334260 GGCATCCAAACATTCAACAATTGTG 60.334 40.000 12.82 6.76 0.00 3.33
3125 7044 6.153067 TCAACAATTGTGAAACGTTTCAGTT 58.847 32.000 37.00 31.20 46.80 3.16
3237 7159 8.167605 TGAAGAGAATTTATAGTACTCCCTCG 57.832 38.462 0.00 0.00 0.00 4.63
3316 7238 4.939439 ACGGTTTAGTGTGTTTCTTCACTT 59.061 37.500 3.25 0.00 43.39 3.16
3389 7311 3.266772 TGTGAATGGAGGGAGTGCTATTT 59.733 43.478 0.00 0.00 0.00 1.40
3416 7338 8.710749 ACAACAAGGATATATACGGGTACTAA 57.289 34.615 0.00 0.00 0.00 2.24
3422 7344 9.979897 AAGGATATATACGGGTACTAACATGTA 57.020 33.333 0.00 0.00 0.00 2.29
3432 7354 8.863086 ACGGGTACTAACATGTATAATATGTGT 58.137 33.333 0.00 3.43 38.67 3.72
3473 7395 1.981256 TTGGAGAGCTTTCGCCTTTT 58.019 45.000 0.00 0.00 36.60 2.27
3492 7414 7.903995 CCTTTTGGCTTTTATTCATTAAGCA 57.096 32.000 0.00 0.00 44.60 3.91
3505 7427 3.440173 TCATTAAGCAAAAGCTTCTCCGG 59.560 43.478 5.93 0.00 0.00 5.14
3506 7428 2.561478 TAAGCAAAAGCTTCTCCGGT 57.439 45.000 5.93 0.00 0.00 5.28
3507 7429 1.692411 AAGCAAAAGCTTCTCCGGTT 58.308 45.000 0.00 0.00 0.00 4.44
3599 7521 4.122046 GTGCCAAGCTGTTCTGAAATTTT 58.878 39.130 0.00 0.00 0.00 1.82
3661 7583 3.783082 CAAGGAGAGGAAAGGGGAATACT 59.217 47.826 0.00 0.00 0.00 2.12
3675 7597 4.010349 GGGAATACTTGGGAAAGACTGTG 58.990 47.826 0.00 0.00 0.00 3.66
3700 7622 2.679837 GTGAGGACCACATTATGCACAG 59.320 50.000 0.00 0.00 45.03 3.66
4092 8016 1.348036 ACTGTACTGTCTTTCCTGGGC 59.652 52.381 0.00 0.00 0.00 5.36
4170 8094 2.221169 TGTTTGGTGCATGTCAGTCTC 58.779 47.619 0.00 0.00 0.00 3.36
4251 8175 7.598759 TTATGATCTACTCCCTCTGTAAACC 57.401 40.000 0.00 0.00 0.00 3.27
4283 8207 8.617290 AGACGTTTTAAATCACTAAATGACCT 57.383 30.769 0.00 0.00 41.24 3.85
4284 8208 9.715121 AGACGTTTTAAATCACTAAATGACCTA 57.285 29.630 0.00 0.00 41.24 3.08
4368 8292 7.886629 AATGTCACTGCCTAATATTTGTCAT 57.113 32.000 0.00 0.00 0.00 3.06
4369 8293 7.886629 ATGTCACTGCCTAATATTTGTCATT 57.113 32.000 0.00 0.00 0.00 2.57
4817 8744 9.271828 GTAATTCATTTTTGGTTCCTCAACATT 57.728 29.630 0.00 0.00 33.70 2.71
4818 8745 8.750515 AATTCATTTTTGGTTCCTCAACATTT 57.249 26.923 0.00 0.00 33.70 2.32
4823 8750 4.916983 TTGGTTCCTCAACATTTCTGTG 57.083 40.909 0.00 0.00 35.22 3.66
4836 8763 4.389992 ACATTTCTGTGTAGTGCTGAATCG 59.610 41.667 0.00 0.00 33.22 3.34
4924 8851 7.815068 GGTTTGCCTATACATATCTAGTCAGTG 59.185 40.741 0.00 0.00 0.00 3.66
4951 8878 2.469826 TGTTCAAGCTGTAGTGTGTCG 58.530 47.619 0.00 0.00 0.00 4.35
5131 9058 7.769044 TCTTATTAGTTCCAAGTGACTAATGGC 59.231 37.037 15.35 0.00 44.50 4.40
5212 9139 5.734720 TCTCTCTGTGTTGAAAGTGAGTTT 58.265 37.500 0.00 0.00 36.12 2.66
5233 9160 7.106239 AGTTTGATTTGCACAGCTATACTAGT 58.894 34.615 0.00 0.00 0.00 2.57
5272 9199 7.986085 AAATGATTGCTAGTGTCTAACAGTT 57.014 32.000 0.00 0.00 33.15 3.16
5413 9340 3.616956 TGGCAGTCTCCTATTGTTCTG 57.383 47.619 0.00 0.00 0.00 3.02
5452 9379 5.220796 GCTGTTTTCTTTTCTTACACGACCT 60.221 40.000 0.00 0.00 0.00 3.85
5524 9456 1.226746 GTGAGGACTTTTCACCACCG 58.773 55.000 0.00 0.00 39.17 4.94
5533 9465 5.079689 ACTTTTCACCACCGAAAATGTTT 57.920 34.783 0.00 0.00 42.39 2.83
5545 9477 5.295045 ACCGAAAATGTTTTACACTCGAAGT 59.705 36.000 8.49 0.00 32.87 3.01
5574 9506 3.433957 GTGCCACGTGTATGATTTGTGTA 59.566 43.478 15.65 0.00 0.00 2.90
5706 9638 3.616219 TGCTAAGTATGCCCGTGAAAAT 58.384 40.909 0.00 0.00 0.00 1.82
5751 9683 1.822990 CTTGGAATGCAGATGGCTGTT 59.177 47.619 0.00 0.00 44.17 3.16
5767 9699 3.306780 GGCTGTTGTAGAGTTTGCTAGGA 60.307 47.826 0.00 0.00 0.00 2.94
5782 9714 5.883685 TGCTAGGAATGTCATGAATCTCT 57.116 39.130 0.00 0.00 0.00 3.10
5785 9717 5.927689 GCTAGGAATGTCATGAATCTCTCTG 59.072 44.000 0.00 0.00 0.00 3.35
5790 9722 4.748277 TGTCATGAATCTCTCTGATGCA 57.252 40.909 0.00 0.00 44.34 3.96
5796 9728 4.903054 TGAATCTCTCTGATGCAAACAGT 58.097 39.130 18.93 4.14 37.76 3.55
5808 9740 7.175467 TCTGATGCAAACAGTACTGAATTTGAT 59.825 33.333 29.28 21.87 38.02 2.57
5810 9742 5.688823 TGCAAACAGTACTGAATTTGATCG 58.311 37.500 29.28 14.82 34.62 3.69
5821 9753 2.589798 ATTTGATCGCAATGCCAAGG 57.410 45.000 0.00 0.00 33.25 3.61
5862 9801 3.896888 TGCCTGAGGTTTGTGAAATTCAT 59.103 39.130 0.00 0.00 0.00 2.57
5868 9807 7.596248 CCTGAGGTTTGTGAAATTCATAACTTG 59.404 37.037 17.31 6.83 27.07 3.16
5937 9876 3.068590 AGCAACTTTTTGTCAGTCCCATG 59.931 43.478 0.00 0.00 34.90 3.66
5945 9884 1.486310 TGTCAGTCCCATGCATACCTC 59.514 52.381 0.00 0.00 0.00 3.85
5964 9903 8.577296 CATACCTCGGAGTTAGATTTCTATTCA 58.423 37.037 4.02 0.00 0.00 2.57
6018 9957 1.835483 GCACAATGCGCCTAGGATCG 61.835 60.000 14.75 8.87 31.71 3.69
6044 9983 2.229784 GGACATTCTTCAAGGTTGCTGG 59.770 50.000 0.00 0.00 0.00 4.85
6093 10050 9.220767 GTATAATCATTTCCTTAAGCCTAGGTG 57.779 37.037 11.31 0.00 34.29 4.00
6103 10060 7.280356 TCCTTAAGCCTAGGTGTCATTTTATC 58.720 38.462 11.31 0.00 34.29 1.75
6127 10084 6.938596 TCAGCATTCTCCTTACATAATCATGG 59.061 38.462 0.00 0.00 36.39 3.66
6168 10127 5.457686 AGGTATGGCAATGTGGATTATGTT 58.542 37.500 0.00 0.00 0.00 2.71
6199 10158 1.043816 CCGGCACAGATATGAGGTCT 58.956 55.000 0.00 0.00 0.00 3.85
6216 10175 6.630071 TGAGGTCTGGCTTTAATAATTTTGC 58.370 36.000 0.00 0.00 0.00 3.68
6220 10179 6.034577 GGTCTGGCTTTAATAATTTTGCGTTC 59.965 38.462 0.00 0.00 0.00 3.95
6228 10187 7.678194 TTAATAATTTTGCGTTCATAGCTGC 57.322 32.000 0.00 0.00 35.28 5.25
6234 10193 0.506080 GCGTTCATAGCTGCGATGAG 59.494 55.000 21.57 14.23 34.85 2.90
6235 10194 1.135046 CGTTCATAGCTGCGATGAGG 58.865 55.000 21.57 15.33 34.85 3.86
6239 10198 4.676459 CGTTCATAGCTGCGATGAGGATAT 60.676 45.833 21.57 0.00 34.85 1.63
6268 10227 1.308998 AAGTTCTTGCCTGTTCACGG 58.691 50.000 0.00 0.00 0.00 4.94
6269 10228 0.535102 AGTTCTTGCCTGTTCACGGG 60.535 55.000 0.00 0.00 45.30 5.28
6276 10235 2.516888 CCTGTTCACGGGGGTCTGT 61.517 63.158 0.00 0.00 38.76 3.41
6286 10245 1.002659 CGGGGGTCTGTAACATGTTCA 59.997 52.381 15.85 11.82 0.00 3.18
6328 10287 5.716228 TGATATGGTGCCAGAGTTTGAAAAT 59.284 36.000 0.00 0.00 0.00 1.82
6401 10360 3.128349 TGACTAAAACCACGACTTGCTC 58.872 45.455 0.00 0.00 0.00 4.26
6418 10377 2.884012 TGCTCGCTTGGAAATCTTTCAA 59.116 40.909 5.14 0.00 38.92 2.69
6423 10382 5.702865 TCGCTTGGAAATCTTTCAATTCAG 58.297 37.500 5.14 0.00 38.92 3.02
6427 10386 7.169645 CGCTTGGAAATCTTTCAATTCAGAAAA 59.830 33.333 5.14 0.00 38.92 2.29
6452 10411 2.679837 CACGCCTTGATCAAGTTGCTAT 59.320 45.455 29.03 16.06 36.72 2.97
6567 10526 5.402270 CACTATTTGTTGGTAAGCTGTTTGC 59.598 40.000 0.00 0.00 43.29 3.68
6587 10546 2.483714 GCTGTCTGTTCACCTGTTGAGA 60.484 50.000 0.00 0.00 34.94 3.27
6592 10551 3.938963 TCTGTTCACCTGTTGAGAAACAC 59.061 43.478 0.00 0.00 34.94 3.32
6595 10554 5.492895 TGTTCACCTGTTGAGAAACACTTA 58.507 37.500 0.00 0.00 34.94 2.24
6597 10556 5.353394 TCACCTGTTGAGAAACACTTACT 57.647 39.130 0.00 0.00 0.00 2.24
6598 10557 5.741011 TCACCTGTTGAGAAACACTTACTT 58.259 37.500 0.00 0.00 0.00 2.24
6599 10558 5.815740 TCACCTGTTGAGAAACACTTACTTC 59.184 40.000 0.00 0.00 0.00 3.01
6608 10567 7.386059 TGAGAAACACTTACTTCATCATGCTA 58.614 34.615 0.00 0.00 0.00 3.49
6609 10568 7.331934 TGAGAAACACTTACTTCATCATGCTAC 59.668 37.037 0.00 0.00 0.00 3.58
6655 10614 7.696992 AAACCATATGTTAATCCTCGTTTGT 57.303 32.000 1.24 0.00 35.67 2.83
6664 10623 8.271312 TGTTAATCCTCGTTTGTATTTTAGGG 57.729 34.615 0.00 0.00 0.00 3.53
6703 10662 1.544724 GGCAATTGGACAAGGTGCTA 58.455 50.000 17.58 0.00 36.26 3.49
6706 10665 2.295909 GCAATTGGACAAGGTGCTACAA 59.704 45.455 7.72 0.00 34.38 2.41
6707 10666 3.243704 GCAATTGGACAAGGTGCTACAAA 60.244 43.478 7.72 0.00 34.38 2.83
6728 10687 2.332362 CTGCTCGAATGGCCATGTGC 62.332 60.000 21.63 19.61 40.16 4.57
6735 10694 1.610554 AATGGCCATGTGCTTCCTGC 61.611 55.000 21.63 0.00 40.92 4.85
6745 10704 1.068055 GTGCTTCCTGCCAAACATCAG 60.068 52.381 0.00 0.00 42.00 2.90
6768 10727 0.253044 AGCAATGGTCCATACACGCT 59.747 50.000 4.33 8.33 0.00 5.07
6784 10743 1.368579 GCTGGCTGCACACCAAAAT 59.631 52.632 11.80 0.00 42.31 1.82
6785 10744 0.947180 GCTGGCTGCACACCAAAATG 60.947 55.000 11.80 0.00 42.31 2.32
6818 10777 1.135575 CGAAGAAGCTTGCCAATGGTC 60.136 52.381 2.10 0.00 0.00 4.02
6836 10795 4.503296 ATGGTCTAGCGAATGGAACATACC 60.503 45.833 3.61 0.00 44.37 2.73
6862 10821 0.752743 ATGGGAATGGTGTCCATGCG 60.753 55.000 1.86 0.00 44.40 4.73
6880 10839 1.777101 CGTAGCTAGCTCAAGGATGC 58.223 55.000 23.26 0.00 0.00 3.91
6930 10896 1.674359 TGCATCAGTTTTGTCGTGGT 58.326 45.000 0.00 0.00 0.00 4.16
6981 10947 5.847670 AGAAAAAGTTCTGTACTCGATGC 57.152 39.130 0.00 0.00 42.73 3.91
7022 10988 2.031930 GTGCTCGTTCGGTGGTTTTTAA 59.968 45.455 0.00 0.00 0.00 1.52
7049 11015 3.260483 CGAGCTGGATCTGCGTGC 61.260 66.667 0.00 0.00 33.59 5.34
7050 11016 3.260483 GAGCTGGATCTGCGTGCG 61.260 66.667 0.00 0.00 33.59 5.34
7057 11023 1.738099 GATCTGCGTGCGAGTGGTT 60.738 57.895 0.00 0.00 0.00 3.67
7072 11043 4.559704 CGAGTGGTTTGCTTCTTCTCTACT 60.560 45.833 0.00 0.00 0.00 2.57
7115 11086 5.367060 ACAGAAGTGGGTAAGAAGAGTTTCT 59.633 40.000 0.00 0.00 45.51 2.52
7167 11138 4.383679 GACGTTGTATTTGTTTCGAGAGC 58.616 43.478 0.00 0.00 0.00 4.09
7200 11171 3.215151 TGTAAGCGAATTTGGGTGTTCA 58.785 40.909 0.00 0.00 0.00 3.18
7204 11175 1.930371 GCGAATTTGGGTGTTCAGCAC 60.930 52.381 4.46 0.00 46.97 4.40
7220 11191 2.031245 CAGCACTTTGTATTTGGACGCA 60.031 45.455 0.00 0.00 0.00 5.24
7236 11207 1.393196 ACGCAGTTTTGTGCTTTTTGC 59.607 42.857 0.00 0.00 37.78 3.68
7237 11208 3.184209 ACGCAGTTTTGTGCTTTTTGCA 61.184 40.909 0.00 0.00 46.18 4.08
7272 11249 7.729116 TGATATGATGTATCTGACTGCTTTGA 58.271 34.615 0.00 0.00 0.00 2.69
7273 11250 7.654923 TGATATGATGTATCTGACTGCTTTGAC 59.345 37.037 0.00 0.00 0.00 3.18
7274 11251 5.411831 TGATGTATCTGACTGCTTTGACT 57.588 39.130 0.00 0.00 0.00 3.41
7275 11252 5.173664 TGATGTATCTGACTGCTTTGACTG 58.826 41.667 0.00 0.00 0.00 3.51
7276 11253 3.329386 TGTATCTGACTGCTTTGACTGC 58.671 45.455 0.00 0.00 0.00 4.40
7277 11254 2.855209 ATCTGACTGCTTTGACTGCT 57.145 45.000 0.00 0.00 0.00 4.24
7278 11255 2.627515 TCTGACTGCTTTGACTGCTT 57.372 45.000 0.00 0.00 0.00 3.91
7279 11256 2.923121 TCTGACTGCTTTGACTGCTTT 58.077 42.857 0.00 0.00 0.00 3.51
7280 11257 2.615447 TCTGACTGCTTTGACTGCTTTG 59.385 45.455 0.00 0.00 0.00 2.77
7290 11267 5.371115 TTTGACTGCTTTGTTATAGTGCC 57.629 39.130 0.00 0.00 0.00 5.01
7298 11275 4.142403 GCTTTGTTATAGTGCCTTGCATGA 60.142 41.667 0.00 0.00 41.91 3.07
7302 11279 5.893687 TGTTATAGTGCCTTGCATGATTTG 58.106 37.500 0.00 0.00 41.91 2.32
7312 11289 5.221303 GCCTTGCATGATTTGAAGCCTATAA 60.221 40.000 0.00 0.00 0.00 0.98
7314 11291 6.263842 CCTTGCATGATTTGAAGCCTATAAGA 59.736 38.462 0.00 0.00 0.00 2.10
7318 11295 8.530311 TGCATGATTTGAAGCCTATAAGAAAAA 58.470 29.630 0.00 0.00 0.00 1.94
7423 11403 3.441163 TGTGCCGTATAGATTTGACGTC 58.559 45.455 9.11 9.11 34.81 4.34
7431 11411 7.019418 CCGTATAGATTTGACGTCGATATCAA 58.981 38.462 19.80 9.53 34.81 2.57
7433 11413 7.532884 CGTATAGATTTGACGTCGATATCAACA 59.467 37.037 19.80 9.69 34.61 3.33
7436 11416 7.539712 AGATTTGACGTCGATATCAACAATT 57.460 32.000 19.80 2.39 34.61 2.32
7515 11496 9.452287 AATTATTTGGATTCTTGGATTGGTTTG 57.548 29.630 0.00 0.00 0.00 2.93
7516 11497 4.888326 TTGGATTCTTGGATTGGTTTGG 57.112 40.909 0.00 0.00 0.00 3.28
7517 11498 4.125124 TGGATTCTTGGATTGGTTTGGA 57.875 40.909 0.00 0.00 0.00 3.53
7518 11499 4.487804 TGGATTCTTGGATTGGTTTGGAA 58.512 39.130 0.00 0.00 0.00 3.53
7519 11500 5.092968 TGGATTCTTGGATTGGTTTGGAAT 58.907 37.500 0.00 0.00 0.00 3.01
7520 11501 5.046448 TGGATTCTTGGATTGGTTTGGAATG 60.046 40.000 0.00 0.00 0.00 2.67
7521 11502 5.187576 GGATTCTTGGATTGGTTTGGAATGA 59.812 40.000 0.00 0.00 0.00 2.57
7522 11503 6.295802 GGATTCTTGGATTGGTTTGGAATGAA 60.296 38.462 0.00 0.00 0.00 2.57
7523 11504 5.726980 TCTTGGATTGGTTTGGAATGAAG 57.273 39.130 0.00 0.00 0.00 3.02
7524 11505 4.527816 TCTTGGATTGGTTTGGAATGAAGG 59.472 41.667 0.00 0.00 0.00 3.46
7525 11506 4.125124 TGGATTGGTTTGGAATGAAGGA 57.875 40.909 0.00 0.00 0.00 3.36
7526 11507 4.487804 TGGATTGGTTTGGAATGAAGGAA 58.512 39.130 0.00 0.00 0.00 3.36
7527 11508 4.527816 TGGATTGGTTTGGAATGAAGGAAG 59.472 41.667 0.00 0.00 0.00 3.46
7528 11509 4.528206 GGATTGGTTTGGAATGAAGGAAGT 59.472 41.667 0.00 0.00 0.00 3.01
7529 11510 5.714806 GGATTGGTTTGGAATGAAGGAAGTA 59.285 40.000 0.00 0.00 0.00 2.24
7530 11511 6.350194 GGATTGGTTTGGAATGAAGGAAGTAC 60.350 42.308 0.00 0.00 0.00 2.73
7531 11512 5.319043 TGGTTTGGAATGAAGGAAGTACT 57.681 39.130 0.00 0.00 0.00 2.73
7532 11513 6.442541 TGGTTTGGAATGAAGGAAGTACTA 57.557 37.500 0.00 0.00 0.00 1.82
7533 11514 6.472887 TGGTTTGGAATGAAGGAAGTACTAG 58.527 40.000 0.00 0.00 0.00 2.57
7534 11515 6.043938 TGGTTTGGAATGAAGGAAGTACTAGT 59.956 38.462 0.00 0.00 0.00 2.57
7535 11516 7.236019 TGGTTTGGAATGAAGGAAGTACTAGTA 59.764 37.037 0.00 0.00 0.00 1.82
7536 11517 7.764901 GGTTTGGAATGAAGGAAGTACTAGTAG 59.235 40.741 1.87 0.00 0.00 2.57
7537 11518 8.529476 GTTTGGAATGAAGGAAGTACTAGTAGA 58.471 37.037 1.87 0.00 0.00 2.59
7538 11519 8.840200 TTGGAATGAAGGAAGTACTAGTAGAT 57.160 34.615 1.87 0.00 0.00 1.98
7539 11520 8.840200 TGGAATGAAGGAAGTACTAGTAGATT 57.160 34.615 1.87 1.28 0.00 2.40
7540 11521 8.915036 TGGAATGAAGGAAGTACTAGTAGATTC 58.085 37.037 15.12 15.12 0.00 2.52
7541 11522 9.138596 GGAATGAAGGAAGTACTAGTAGATTCT 57.861 37.037 19.72 8.21 0.00 2.40
7542 11523 9.959749 GAATGAAGGAAGTACTAGTAGATTCTG 57.040 37.037 19.72 0.00 0.00 3.02
7543 11524 7.883391 TGAAGGAAGTACTAGTAGATTCTGG 57.117 40.000 19.72 0.00 0.00 3.86
7544 11525 6.834451 TGAAGGAAGTACTAGTAGATTCTGGG 59.166 42.308 19.72 0.00 0.00 4.45
7545 11526 6.593759 AGGAAGTACTAGTAGATTCTGGGA 57.406 41.667 19.72 0.00 0.00 4.37
7546 11527 6.607019 AGGAAGTACTAGTAGATTCTGGGAG 58.393 44.000 19.72 0.00 0.00 4.30
7547 11528 6.160814 AGGAAGTACTAGTAGATTCTGGGAGT 59.839 42.308 19.72 0.00 0.00 3.85
7548 11529 6.263617 GGAAGTACTAGTAGATTCTGGGAGTG 59.736 46.154 19.72 0.00 0.00 3.51
7549 11530 6.578313 AGTACTAGTAGATTCTGGGAGTGA 57.422 41.667 1.87 0.00 0.00 3.41
7550 11531 7.156694 AGTACTAGTAGATTCTGGGAGTGAT 57.843 40.000 1.87 0.00 0.00 3.06
7551 11532 7.001674 AGTACTAGTAGATTCTGGGAGTGATG 58.998 42.308 1.87 0.00 0.00 3.07
7591 11572 7.190920 AGTTTAGCAGTGATGTTTTGTACTC 57.809 36.000 0.00 0.00 0.00 2.59
7596 11577 4.804261 GCAGTGATGTTTTGTACTCCCTCT 60.804 45.833 0.00 0.00 0.00 3.69
7615 11596 8.433421 TCCCTCTGTAAAGAAATATAAAAGCG 57.567 34.615 0.00 0.00 0.00 4.68
7632 11613 6.952935 AAAAGCGTTAAGATCACTAGTCTG 57.047 37.500 0.00 0.00 0.00 3.51
7633 11614 5.646577 AAGCGTTAAGATCACTAGTCTGT 57.353 39.130 0.00 0.00 0.00 3.41
7634 11615 6.754702 AAGCGTTAAGATCACTAGTCTGTA 57.245 37.500 0.00 0.00 0.00 2.74
7635 11616 6.366315 AGCGTTAAGATCACTAGTCTGTAG 57.634 41.667 0.00 0.00 0.00 2.74
7636 11617 5.297278 AGCGTTAAGATCACTAGTCTGTAGG 59.703 44.000 0.00 0.00 0.00 3.18
7637 11618 5.505985 GCGTTAAGATCACTAGTCTGTAGGG 60.506 48.000 0.00 0.00 0.00 3.53
7638 11619 5.821470 CGTTAAGATCACTAGTCTGTAGGGA 59.179 44.000 0.00 0.00 0.00 4.20
7640 11621 7.013464 CGTTAAGATCACTAGTCTGTAGGGATT 59.987 40.741 0.00 0.00 37.77 3.01
7642 11623 9.575868 TTAAGATCACTAGTCTGTAGGGATTAG 57.424 37.037 0.00 0.00 37.77 1.73
7656 11757 3.397955 AGGGATTAGGAGTGTTTGGTTGT 59.602 43.478 0.00 0.00 0.00 3.32
7657 11758 3.506067 GGGATTAGGAGTGTTTGGTTGTG 59.494 47.826 0.00 0.00 0.00 3.33
7658 11759 3.506067 GGATTAGGAGTGTTTGGTTGTGG 59.494 47.826 0.00 0.00 0.00 4.17
7665 11766 4.261447 GGAGTGTTTGGTTGTGGTTATGTC 60.261 45.833 0.00 0.00 0.00 3.06
7668 11769 3.634448 TGTTTGGTTGTGGTTATGTCCAG 59.366 43.478 0.00 0.00 38.23 3.86
7688 11789 6.878317 TCCAGTTGGATTTGAGATAGTAGTG 58.122 40.000 0.00 0.00 39.78 2.74
7689 11790 6.440647 TCCAGTTGGATTTGAGATAGTAGTGT 59.559 38.462 0.00 0.00 39.78 3.55
7690 11791 7.038302 TCCAGTTGGATTTGAGATAGTAGTGTT 60.038 37.037 0.00 0.00 39.78 3.32
7691 11792 7.607991 CCAGTTGGATTTGAGATAGTAGTGTTT 59.392 37.037 0.00 0.00 37.39 2.83
7692 11793 8.660373 CAGTTGGATTTGAGATAGTAGTGTTTC 58.340 37.037 0.00 0.00 0.00 2.78
7693 11794 7.545965 AGTTGGATTTGAGATAGTAGTGTTTCG 59.454 37.037 0.00 0.00 0.00 3.46
7694 11795 6.931838 TGGATTTGAGATAGTAGTGTTTCGT 58.068 36.000 0.00 0.00 0.00 3.85
7695 11796 8.058667 TGGATTTGAGATAGTAGTGTTTCGTA 57.941 34.615 0.00 0.00 0.00 3.43
7696 11797 7.972277 TGGATTTGAGATAGTAGTGTTTCGTAC 59.028 37.037 0.00 0.00 0.00 3.67
7697 11798 7.434602 GGATTTGAGATAGTAGTGTTTCGTACC 59.565 40.741 0.00 0.00 0.00 3.34
7698 11799 5.475273 TGAGATAGTAGTGTTTCGTACCG 57.525 43.478 0.00 0.00 0.00 4.02
7705 11806 1.334869 AGTGTTTCGTACCGTTCGTCT 59.665 47.619 0.00 0.00 0.00 4.18
7723 11824 4.279922 TCGTCTGTCAGGATTGAGTGTTTA 59.720 41.667 0.00 0.00 32.98 2.01
7745 11846 2.885135 TCAGGTCATGAGGTGCAAAT 57.115 45.000 0.00 0.00 32.77 2.32
7746 11847 2.439409 TCAGGTCATGAGGTGCAAATG 58.561 47.619 0.00 0.00 32.77 2.32
7747 11848 1.475280 CAGGTCATGAGGTGCAAATGG 59.525 52.381 0.00 0.00 0.00 3.16
7748 11849 1.076024 AGGTCATGAGGTGCAAATGGT 59.924 47.619 0.00 0.00 0.00 3.55
7749 11850 1.895131 GGTCATGAGGTGCAAATGGTT 59.105 47.619 0.00 0.00 0.00 3.67
7750 11851 2.094545 GGTCATGAGGTGCAAATGGTTC 60.095 50.000 0.00 0.00 0.00 3.62
7751 11852 2.094545 GTCATGAGGTGCAAATGGTTCC 60.095 50.000 0.00 0.00 0.00 3.62
7752 11853 1.894466 CATGAGGTGCAAATGGTTCCA 59.106 47.619 0.00 0.00 0.00 3.53
7753 11854 1.619654 TGAGGTGCAAATGGTTCCAG 58.380 50.000 0.00 0.00 0.00 3.86
7754 11855 1.144708 TGAGGTGCAAATGGTTCCAGA 59.855 47.619 0.00 0.00 0.00 3.86
7755 11856 2.225091 TGAGGTGCAAATGGTTCCAGAT 60.225 45.455 0.00 0.00 0.00 2.90
7796 11899 4.070009 GTTTGGTTGGGGTACTAACAGAG 58.930 47.826 0.00 0.00 0.00 3.35
7801 11904 1.272313 TGGGGTACTAACAGAGCGAGT 60.272 52.381 0.00 0.00 0.00 4.18
7824 11927 6.040504 AGTTGGTTTCTTAGGGAATGTTTGAC 59.959 38.462 0.00 0.00 33.53 3.18
7832 11935 2.986728 AGGGAATGTTTGACCTAGGTGT 59.013 45.455 22.10 0.00 0.00 4.16
7855 11958 2.596575 CGCACACGAACACTTAACTGTG 60.597 50.000 0.00 0.00 43.93 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 5.779529 ATGCACCCAAAATAGCATTCTAG 57.220 39.130 0.00 0.00 44.63 2.43
151 152 7.490962 AACGAGTAAACAACATCAGATTCAA 57.509 32.000 0.00 0.00 0.00 2.69
157 158 6.533819 TGGTTAACGAGTAAACAACATCAG 57.466 37.500 0.00 0.00 36.42 2.90
199 200 4.122776 CGCTACTGATAAAGGTTGCATCT 58.877 43.478 0.00 0.00 34.82 2.90
201 202 3.873910 ACGCTACTGATAAAGGTTGCAT 58.126 40.909 0.00 0.00 34.82 3.96
240 241 0.959867 TCCGAATCGACACCGGTACA 60.960 55.000 6.87 0.00 43.40 2.90
273 288 5.107760 CGTCACCAATTTGATTTTGCTGAAG 60.108 40.000 0.00 0.00 0.00 3.02
274 289 4.744137 CGTCACCAATTTGATTTTGCTGAA 59.256 37.500 0.00 0.00 0.00 3.02
275 290 4.037327 TCGTCACCAATTTGATTTTGCTGA 59.963 37.500 0.00 0.00 0.00 4.26
276 291 4.297510 TCGTCACCAATTTGATTTTGCTG 58.702 39.130 0.00 0.00 0.00 4.41
277 292 4.582701 TCGTCACCAATTTGATTTTGCT 57.417 36.364 0.00 0.00 0.00 3.91
278 293 5.461737 TCTTTCGTCACCAATTTGATTTTGC 59.538 36.000 0.00 0.00 0.00 3.68
279 294 7.462109 TTCTTTCGTCACCAATTTGATTTTG 57.538 32.000 0.00 0.00 0.00 2.44
280 295 7.763985 AGTTTCTTTCGTCACCAATTTGATTTT 59.236 29.630 0.00 0.00 0.00 1.82
281 296 7.222611 CAGTTTCTTTCGTCACCAATTTGATTT 59.777 33.333 0.00 0.00 0.00 2.17
282 297 6.697019 CAGTTTCTTTCGTCACCAATTTGATT 59.303 34.615 0.00 0.00 0.00 2.57
283 298 6.183360 ACAGTTTCTTTCGTCACCAATTTGAT 60.183 34.615 0.00 0.00 0.00 2.57
284 299 5.124776 ACAGTTTCTTTCGTCACCAATTTGA 59.875 36.000 0.00 0.00 0.00 2.69
285 300 5.339990 ACAGTTTCTTTCGTCACCAATTTG 58.660 37.500 0.00 0.00 0.00 2.32
286 301 5.357032 AGACAGTTTCTTTCGTCACCAATTT 59.643 36.000 0.00 0.00 0.00 1.82
287 302 4.881850 AGACAGTTTCTTTCGTCACCAATT 59.118 37.500 0.00 0.00 0.00 2.32
293 308 6.335471 TGGTATAGACAGTTTCTTTCGTCA 57.665 37.500 0.00 0.00 35.55 4.35
326 341 1.000506 CCTATCATGCTTTGCCCATGC 59.999 52.381 0.00 0.00 39.83 4.06
330 345 3.195396 TGTTTTCCTATCATGCTTTGCCC 59.805 43.478 0.00 0.00 0.00 5.36
331 346 4.454728 TGTTTTCCTATCATGCTTTGCC 57.545 40.909 0.00 0.00 0.00 4.52
355 370 6.040729 CCTCTCTCTCTGCATAAGATGAGAAA 59.959 42.308 19.52 3.78 40.65 2.52
369 384 4.615588 AAGGTGTTTTCCTCTCTCTCTG 57.384 45.455 0.00 0.00 36.74 3.35
370 385 8.616799 ATTATAAGGTGTTTTCCTCTCTCTCT 57.383 34.615 0.00 0.00 36.74 3.10
388 403 8.772677 CGCGTTCGTATGTTATCAATTATAAG 57.227 34.615 0.00 0.00 30.55 1.73
407 422 3.659735 CTCACATAATCACAACGCGTTC 58.340 45.455 23.92 0.00 0.00 3.95
442 457 0.321298 TTGCTTCCCACCTCGCTAAC 60.321 55.000 0.00 0.00 0.00 2.34
444 459 0.902984 TCTTGCTTCCCACCTCGCTA 60.903 55.000 0.00 0.00 0.00 4.26
447 462 2.678336 GTTTATCTTGCTTCCCACCTCG 59.322 50.000 0.00 0.00 0.00 4.63
452 467 4.646945 TGTTGTTGTTTATCTTGCTTCCCA 59.353 37.500 0.00 0.00 0.00 4.37
453 468 4.982295 GTGTTGTTGTTTATCTTGCTTCCC 59.018 41.667 0.00 0.00 0.00 3.97
455 470 6.033341 TGTGTGTTGTTGTTTATCTTGCTTC 58.967 36.000 0.00 0.00 0.00 3.86
456 471 5.960113 TGTGTGTTGTTGTTTATCTTGCTT 58.040 33.333 0.00 0.00 0.00 3.91
458 473 6.582295 CCTATGTGTGTTGTTGTTTATCTTGC 59.418 38.462 0.00 0.00 0.00 4.01
459 474 7.870826 TCCTATGTGTGTTGTTGTTTATCTTG 58.129 34.615 0.00 0.00 0.00 3.02
460 475 8.514594 CATCCTATGTGTGTTGTTGTTTATCTT 58.485 33.333 0.00 0.00 0.00 2.40
467 483 3.253188 GTGCATCCTATGTGTGTTGTTGT 59.747 43.478 0.00 0.00 0.00 3.32
469 485 2.483877 CGTGCATCCTATGTGTGTTGTT 59.516 45.455 0.00 0.00 0.00 2.83
470 486 2.076100 CGTGCATCCTATGTGTGTTGT 58.924 47.619 0.00 0.00 0.00 3.32
478 494 1.858091 GACTCCACGTGCATCCTATG 58.142 55.000 10.91 0.00 0.00 2.23
481 497 2.276116 ACGACTCCACGTGCATCCT 61.276 57.895 10.91 0.00 44.84 3.24
482 498 2.261671 ACGACTCCACGTGCATCC 59.738 61.111 10.91 0.00 44.84 3.51
515 531 1.134401 ACGCCCATAACCATGACTCAG 60.134 52.381 0.00 0.00 33.67 3.35
521 537 4.394920 GGATATAACACGCCCATAACCATG 59.605 45.833 0.00 0.00 0.00 3.66
526 542 7.189079 TCATATGGATATAACACGCCCATAA 57.811 36.000 2.13 0.00 41.51 1.90
531 547 7.435068 AGTTTTCATATGGATATAACACGCC 57.565 36.000 2.13 0.00 0.00 5.68
649 965 6.001460 TCGCTTTGGAAAGAATAAGAAAGGA 58.999 36.000 3.23 0.00 38.28 3.36
678 994 1.007963 TCCTCCCCCTCTCGTTTACAT 59.992 52.381 0.00 0.00 0.00 2.29
679 995 0.410663 TCCTCCCCCTCTCGTTTACA 59.589 55.000 0.00 0.00 0.00 2.41
835 1183 1.813178 GTGGAGAAGGTTTTAGCAGGC 59.187 52.381 0.00 0.00 0.00 4.85
1971 2319 1.001760 TCTCTCCCACTAGGCCACC 59.998 63.158 5.01 0.00 34.51 4.61
2131 2479 6.906157 AAATCAGAAGCTTTCTTTCATGGA 57.094 33.333 0.00 0.00 38.11 3.41
2152 2500 8.789762 GGTAAGTGCTAGACAATAAAGGAAAAA 58.210 33.333 0.00 0.00 0.00 1.94
2161 2509 4.163268 TGCATGGGTAAGTGCTAGACAATA 59.837 41.667 0.00 0.00 41.78 1.90
2163 2511 2.304470 TGCATGGGTAAGTGCTAGACAA 59.696 45.455 0.00 0.00 41.78 3.18
2177 2525 1.259142 TTGGCCACAGATTGCATGGG 61.259 55.000 3.88 0.00 33.81 4.00
2178 2526 0.828022 ATTGGCCACAGATTGCATGG 59.172 50.000 3.88 0.00 36.51 3.66
2202 6120 2.289631 ACTTGCACAGATCATTGTCCGA 60.290 45.455 0.00 0.00 0.00 4.55
2216 6134 0.517316 CTCGCCCAAGTAACTTGCAC 59.483 55.000 0.00 0.00 39.85 4.57
2231 6149 2.930682 GTTCAGATACTTGGGAACTCGC 59.069 50.000 0.00 0.00 37.31 5.03
2278 6196 3.304659 CCACGGACACAAAAGGATGAAAG 60.305 47.826 0.00 0.00 0.00 2.62
2380 6299 1.059098 ACAACATCAGTGAGGCCTGA 58.941 50.000 12.00 0.00 45.06 3.86
2417 6336 0.533032 TTCGTGACACGGCCATATCA 59.467 50.000 26.55 2.84 42.81 2.15
2456 6375 6.320926 TGAATCAAGTCAAAGATTCCAACACA 59.679 34.615 11.34 0.00 45.94 3.72
2619 6538 1.880027 CCACCAGTTCTACAAGGCAAC 59.120 52.381 0.00 0.00 0.00 4.17
2677 6596 0.734942 CATGAGGCCAAAAGCAAGCG 60.735 55.000 5.01 0.00 46.50 4.68
2731 6650 3.521126 AGTGTTGAGGTAAGGATCTGCAT 59.479 43.478 0.00 0.00 0.00 3.96
2732 6651 2.906389 AGTGTTGAGGTAAGGATCTGCA 59.094 45.455 0.00 0.00 0.00 4.41
2813 6732 3.750501 TGGTCCTATGACAGTACCTCA 57.249 47.619 0.41 0.00 43.65 3.86
2844 6763 2.736670 ACATTCCCTAGCCATTGTCC 57.263 50.000 0.00 0.00 0.00 4.02
2867 6786 6.427853 CACAAGACAATACTTGATGAGGTGAA 59.572 38.462 14.00 0.00 46.85 3.18
3072 6991 0.251742 TGCCCAAGAAATGAGGGTGG 60.252 55.000 0.00 0.00 44.69 4.61
3112 7031 4.433304 CGTCAACATCAACTGAAACGTTTC 59.567 41.667 29.72 29.72 37.69 2.78
3125 7044 7.490079 GGTACAAGTATATCAACGTCAACATCA 59.510 37.037 0.00 0.00 0.00 3.07
3278 7200 4.811969 AAACCGTGTCTGTATACATCCA 57.188 40.909 5.91 3.35 0.00 3.41
3288 7210 3.869246 AGAAACACACTAAACCGTGTCTG 59.131 43.478 0.00 0.00 45.74 3.51
3309 7231 7.974501 ACTACATACGGACTGAAATAAGTGAAG 59.025 37.037 0.00 0.00 0.00 3.02
3316 7238 6.971726 ATGGACTACATACGGACTGAAATA 57.028 37.500 0.00 0.00 38.26 1.40
3389 7311 8.710749 AGTACCCGTATATATCCTTGTTGTTA 57.289 34.615 0.00 0.00 0.00 2.41
3407 7329 9.350357 GACACATATTATACATGTTAGTACCCG 57.650 37.037 2.30 0.00 34.39 5.28
3416 7338 9.710900 ATTCACGATGACACATATTATACATGT 57.289 29.630 2.69 2.69 37.09 3.21
3422 7344 9.764363 AACTGTATTCACGATGACACATATTAT 57.236 29.630 0.00 0.00 0.00 1.28
3492 7414 5.946377 AGATTATTCAACCGGAGAAGCTTTT 59.054 36.000 9.46 0.00 0.00 2.27
3505 7427 6.372659 TGGCTTTCTGACTGAGATTATTCAAC 59.627 38.462 0.00 0.00 0.00 3.18
3506 7428 6.475504 TGGCTTTCTGACTGAGATTATTCAA 58.524 36.000 0.00 0.00 0.00 2.69
3507 7429 6.053632 TGGCTTTCTGACTGAGATTATTCA 57.946 37.500 0.00 0.00 0.00 2.57
3577 7499 3.375782 AATTTCAGAACAGCTTGGCAC 57.624 42.857 0.00 0.00 0.00 5.01
3617 7539 6.785488 TGTCAATAACAGACTGTCATGAAC 57.215 37.500 8.93 6.07 36.94 3.18
3661 7583 0.550914 ACCTGCACAGTCTTTCCCAA 59.449 50.000 0.00 0.00 0.00 4.12
3675 7597 2.292267 CATAATGTGGTCCTCACCTGC 58.708 52.381 0.00 0.00 45.48 4.85
3831 7754 2.516930 CCGTCCATGCCATCCACC 60.517 66.667 0.00 0.00 0.00 4.61
4092 8016 7.402862 TCCAAAAGAAGATAAGTTTCCCCTAG 58.597 38.462 0.00 0.00 0.00 3.02
4143 8067 3.181488 TGACATGCACCAAACAGAAGTTG 60.181 43.478 0.00 0.00 38.17 3.16
4170 8094 4.282068 CAACAACATTCAGAACTGGAACG 58.718 43.478 1.93 0.00 0.00 3.95
4234 8158 9.198475 TCTTATAAAGGTTTACAGAGGGAGTAG 57.802 37.037 0.00 0.00 0.00 2.57
4268 8192 8.617290 AAGACGTTTTAGGTCATTTAGTGATT 57.383 30.769 0.00 0.00 39.48 2.57
4269 8193 9.886132 ATAAGACGTTTTAGGTCATTTAGTGAT 57.114 29.630 4.75 0.00 39.48 3.06
4285 8209 9.551734 ACCTCTGTAAACTTTTATAAGACGTTT 57.448 29.630 0.00 11.20 35.30 3.60
4287 8211 9.852091 CTACCTCTGTAAACTTTTATAAGACGT 57.148 33.333 0.00 0.00 35.30 4.34
4288 8212 9.852091 ACTACCTCTGTAAACTTTTATAAGACG 57.148 33.333 0.00 0.00 35.30 4.18
4332 8256 9.995003 TTAGGCAGTGACATTAAAATGATTTTT 57.005 25.926 8.60 0.00 39.67 1.94
4384 8309 4.811969 TGAGTCGGCTTGGTTTTCTATA 57.188 40.909 0.00 0.00 0.00 1.31
4528 8453 9.559958 AATACAAGTGCGAAAAATGAGATTAAG 57.440 29.630 0.00 0.00 0.00 1.85
4578 8503 4.754114 CAGAACTGGGAGAGTTTCTCTTTG 59.246 45.833 6.10 0.38 45.48 2.77
4817 8744 3.660501 ACGATTCAGCACTACACAGAA 57.339 42.857 0.00 0.00 0.00 3.02
4818 8745 4.983671 ATACGATTCAGCACTACACAGA 57.016 40.909 0.00 0.00 0.00 3.41
4823 8750 5.220605 GGGACAAAATACGATTCAGCACTAC 60.221 44.000 0.00 0.00 0.00 2.73
4910 8837 6.408858 ACAAAAACGCACTGACTAGATATG 57.591 37.500 0.00 0.00 0.00 1.78
4924 8851 3.482110 CACTACAGCTTGAACAAAAACGC 59.518 43.478 0.00 0.00 0.00 4.84
5131 9058 3.127548 AGCAATGCGTACCTGAAATGAAG 59.872 43.478 0.00 0.00 0.00 3.02
5212 9139 6.471233 AGACTAGTATAGCTGTGCAAATCA 57.529 37.500 0.00 0.00 44.39 2.57
5233 9160 8.297470 AGCAATCATTTAGAAGGCATAAAAGA 57.703 30.769 0.00 0.00 33.32 2.52
5253 9180 6.595716 GGATTCAACTGTTAGACACTAGCAAT 59.404 38.462 0.00 0.00 0.00 3.56
5297 9224 0.733729 GAAGCATGCAAGAGAGCCTG 59.266 55.000 21.98 0.00 33.92 4.85
5302 9229 5.620654 GCAATAAACTGAAGCATGCAAGAGA 60.621 40.000 21.98 5.77 32.80 3.10
5413 9340 1.227205 CAGCCCAGATCGAGCAGAC 60.227 63.158 2.38 0.00 0.00 3.51
5524 9456 8.609478 TTCAACTTCGAGTGTAAAACATTTTC 57.391 30.769 0.00 0.00 0.00 2.29
5533 9465 3.496884 GCACCATTCAACTTCGAGTGTAA 59.503 43.478 0.00 0.00 0.00 2.41
5545 9477 1.809547 CATACACGTGGCACCATTCAA 59.190 47.619 21.57 0.00 0.00 2.69
5604 9536 3.817084 CAGCACTCTGAAATGAAAGACCA 59.183 43.478 0.00 0.00 42.95 4.02
5751 9683 5.738619 TGACATTCCTAGCAAACTCTACA 57.261 39.130 0.00 0.00 0.00 2.74
5767 9699 5.681639 TGCATCAGAGAGATTCATGACATT 58.318 37.500 0.00 0.00 33.72 2.71
5782 9714 6.486320 TCAAATTCAGTACTGTTTGCATCAGA 59.514 34.615 24.07 10.76 36.81 3.27
5785 9717 6.467047 CGATCAAATTCAGTACTGTTTGCATC 59.533 38.462 24.07 22.93 30.97 3.91
5790 9722 5.940192 TGCGATCAAATTCAGTACTGTTT 57.060 34.783 21.99 13.35 0.00 2.83
5796 9728 3.693578 TGGCATTGCGATCAAATTCAGTA 59.306 39.130 1.91 0.00 35.56 2.74
5810 9742 3.085296 ATGGGGCCTTGGCATTGC 61.085 61.111 14.04 0.00 0.00 3.56
5821 9753 4.126437 GGCATAAAAATAACACATGGGGC 58.874 43.478 0.00 0.00 0.00 5.80
5862 9801 6.256975 AGCGCGATCATTAATAACACAAGTTA 59.743 34.615 12.10 0.00 43.83 2.24
5868 9807 3.247648 ACCAGCGCGATCATTAATAACAC 59.752 43.478 12.10 0.00 0.00 3.32
5926 9865 1.539065 CGAGGTATGCATGGGACTGAC 60.539 57.143 10.16 0.00 0.00 3.51
5937 9876 5.203060 AGAAATCTAACTCCGAGGTATGC 57.797 43.478 0.00 0.00 0.00 3.14
6018 9957 3.990959 ACCTTGAAGAATGTCCTCCTC 57.009 47.619 0.00 0.00 0.00 3.71
6044 9983 4.858935 TCACAATTTAGCTGACTTGCAAC 58.141 39.130 8.28 0.00 34.99 4.17
6081 10038 6.542370 GCTGATAAAATGACACCTAGGCTTAA 59.458 38.462 9.30 0.00 0.00 1.85
6084 10041 4.080356 TGCTGATAAAATGACACCTAGGCT 60.080 41.667 9.30 0.00 0.00 4.58
6093 10050 8.213518 TGTAAGGAGAATGCTGATAAAATGAC 57.786 34.615 0.00 0.00 36.28 3.06
6103 10060 6.150641 CCCATGATTATGTAAGGAGAATGCTG 59.849 42.308 0.00 0.00 31.77 4.41
6153 10112 6.514541 GCCTCTCATCAACATAATCCACATTG 60.515 42.308 0.00 0.00 0.00 2.82
6158 10117 4.454678 GTGCCTCTCATCAACATAATCCA 58.545 43.478 0.00 0.00 0.00 3.41
6168 10127 3.002583 TGCCGGTGCCTCTCATCA 61.003 61.111 1.90 0.00 36.33 3.07
6199 10158 7.221838 GCTATGAACGCAAAATTATTAAAGCCA 59.778 33.333 0.00 0.00 0.00 4.75
6213 10172 0.652071 CATCGCAGCTATGAACGCAA 59.348 50.000 0.37 0.00 0.00 4.85
6216 10175 1.135046 CCTCATCGCAGCTATGAACG 58.865 55.000 10.62 0.95 33.13 3.95
6220 10179 4.142204 ACTCATATCCTCATCGCAGCTATG 60.142 45.833 0.24 0.24 0.00 2.23
6228 10187 9.347934 GAACTTAATGTACTCATATCCTCATCG 57.652 37.037 0.00 0.00 33.49 3.84
6234 10193 7.934120 AGGCAAGAACTTAATGTACTCATATCC 59.066 37.037 0.00 0.00 33.49 2.59
6235 10194 8.768955 CAGGCAAGAACTTAATGTACTCATATC 58.231 37.037 0.00 0.00 33.49 1.63
6239 10198 5.865085 ACAGGCAAGAACTTAATGTACTCA 58.135 37.500 0.00 0.00 0.00 3.41
6268 10227 4.222124 AGATGAACATGTTACAGACCCC 57.778 45.455 11.95 0.00 0.00 4.95
6269 10228 5.122396 GTGAAGATGAACATGTTACAGACCC 59.878 44.000 11.95 0.00 0.00 4.46
6276 10235 5.863965 TCACCTGTGAAGATGAACATGTTA 58.136 37.500 11.95 0.61 36.53 2.41
6328 10287 2.360801 GCCAACAAACTTAAGTCCAGCA 59.639 45.455 8.95 0.00 0.00 4.41
6397 10356 2.503331 TGAAAGATTTCCAAGCGAGCA 58.497 42.857 3.00 0.00 36.36 4.26
6398 10357 3.559238 TTGAAAGATTTCCAAGCGAGC 57.441 42.857 3.00 0.00 36.36 5.03
6401 10360 5.702865 TCTGAATTGAAAGATTTCCAAGCG 58.297 37.500 3.00 0.00 36.36 4.68
6418 10377 5.452078 TCAAGGCGTGAATTTTTCTGAAT 57.548 34.783 0.00 0.00 31.51 2.57
6423 10382 5.222631 ACTTGATCAAGGCGTGAATTTTTC 58.777 37.500 33.11 0.59 42.53 2.29
6427 10386 3.612479 GCAACTTGATCAAGGCGTGAATT 60.612 43.478 33.11 17.27 42.53 2.17
6567 10526 3.459232 TCTCAACAGGTGAACAGACAG 57.541 47.619 0.00 0.00 35.22 3.51
6587 10546 6.163476 TCGTAGCATGATGAAGTAAGTGTTT 58.837 36.000 0.00 0.00 0.00 2.83
6592 10551 6.479990 TCCATTTCGTAGCATGATGAAGTAAG 59.520 38.462 0.00 0.00 0.00 2.34
6595 10554 4.769688 TCCATTTCGTAGCATGATGAAGT 58.230 39.130 0.00 0.00 0.00 3.01
6597 10556 5.414144 TGTTTCCATTTCGTAGCATGATGAA 59.586 36.000 0.00 0.00 0.00 2.57
6598 10557 4.940654 TGTTTCCATTTCGTAGCATGATGA 59.059 37.500 0.00 0.00 0.00 2.92
6599 10558 5.233957 TGTTTCCATTTCGTAGCATGATG 57.766 39.130 0.00 0.00 0.00 3.07
6608 10567 5.838531 TTAAACACCTGTTTCCATTTCGT 57.161 34.783 6.69 0.00 44.15 3.85
6609 10568 7.395645 GTTTTTAAACACCTGTTTCCATTTCG 58.604 34.615 6.69 0.00 44.15 3.46
6703 10662 1.589716 GGCCATTCGAGCAGCTTTGT 61.590 55.000 0.00 0.00 0.00 2.83
6706 10665 1.077212 ATGGCCATTCGAGCAGCTT 60.077 52.632 14.09 0.00 0.00 3.74
6707 10666 1.822613 CATGGCCATTCGAGCAGCT 60.823 57.895 17.92 0.00 0.00 4.24
6715 10674 0.458669 CAGGAAGCACATGGCCATTC 59.541 55.000 17.92 11.75 46.50 2.67
6728 10687 2.886523 TGAACTGATGTTTGGCAGGAAG 59.113 45.455 0.00 0.00 36.39 3.46
6735 10694 3.006110 ACCATTGCTGAACTGATGTTTGG 59.994 43.478 0.00 0.00 36.39 3.28
6745 10704 2.095853 CGTGTATGGACCATTGCTGAAC 59.904 50.000 13.40 4.01 0.00 3.18
6768 10727 1.069427 GCATTTTGGTGTGCAGCCA 59.931 52.632 5.87 5.87 40.94 4.75
6784 10743 3.266230 CTTCGCATGCCCGTTTGCA 62.266 57.895 13.15 0.00 46.94 4.08
6785 10744 2.470801 TTCTTCGCATGCCCGTTTGC 62.471 55.000 13.15 0.00 35.50 3.68
6818 10777 3.997021 GGATGGTATGTTCCATTCGCTAG 59.003 47.826 0.00 0.00 46.72 3.42
6862 10821 2.627699 AGAGCATCCTTGAGCTAGCTAC 59.372 50.000 19.38 11.96 42.04 3.58
6904 10867 3.483196 CGACAAAACTGATGCAACAACTG 59.517 43.478 0.00 0.00 0.00 3.16
6905 10868 3.128589 ACGACAAAACTGATGCAACAACT 59.871 39.130 0.00 0.00 0.00 3.16
6913 10879 2.858260 GCCAACCACGACAAAACTGATG 60.858 50.000 0.00 0.00 0.00 3.07
6930 10896 1.134521 CGACCATGGTAGCTTAGCCAA 60.135 52.381 19.80 0.00 38.38 4.52
6981 10947 1.903877 AATCCCCTGCAGACAGTCCG 61.904 60.000 17.39 0.00 42.81 4.79
7022 10988 2.503356 AGATCCAGCTCGGTTCTTTCAT 59.497 45.455 8.94 0.00 40.38 2.57
7049 11015 2.760374 AGAGAAGAAGCAAACCACTCG 58.240 47.619 0.00 0.00 0.00 4.18
7050 11016 4.888917 AGTAGAGAAGAAGCAAACCACTC 58.111 43.478 0.00 0.00 0.00 3.51
7091 11062 5.367060 AGAAACTCTTCTTACCCACTTCTGT 59.633 40.000 0.00 0.00 38.89 3.41
7099 11070 3.748568 CAGCACAGAAACTCTTCTTACCC 59.251 47.826 0.00 0.00 40.05 3.69
7115 11086 7.121168 CCTTTCCTTTTTCAGATATACAGCACA 59.879 37.037 0.00 0.00 0.00 4.57
7167 11138 2.959516 TCGCTTACATCTCAACACCAG 58.040 47.619 0.00 0.00 0.00 4.00
7200 11171 2.226330 TGCGTCCAAATACAAAGTGCT 58.774 42.857 0.00 0.00 0.00 4.40
7204 11175 5.040635 ACAAAACTGCGTCCAAATACAAAG 58.959 37.500 0.00 0.00 0.00 2.77
7241 11212 9.650539 GCAGTCAGATACATCATATCAAGTTAT 57.349 33.333 0.00 0.00 0.00 1.89
7242 11213 8.864087 AGCAGTCAGATACATCATATCAAGTTA 58.136 33.333 0.00 0.00 0.00 2.24
7244 11215 7.300556 AGCAGTCAGATACATCATATCAAGT 57.699 36.000 0.00 0.00 0.00 3.16
7248 11225 7.871973 AGTCAAAGCAGTCAGATACATCATATC 59.128 37.037 0.00 0.00 0.00 1.63
7253 11230 4.033817 GCAGTCAAAGCAGTCAGATACATC 59.966 45.833 0.00 0.00 0.00 3.06
7272 11249 3.191371 GCAAGGCACTATAACAAAGCAGT 59.809 43.478 0.00 0.00 38.49 4.40
7273 11250 3.191162 TGCAAGGCACTATAACAAAGCAG 59.809 43.478 0.00 0.00 38.49 4.24
7274 11251 3.153130 TGCAAGGCACTATAACAAAGCA 58.847 40.909 0.00 0.00 38.49 3.91
7275 11252 3.848272 TGCAAGGCACTATAACAAAGC 57.152 42.857 0.00 0.00 38.49 3.51
7276 11253 5.565592 TCATGCAAGGCACTATAACAAAG 57.434 39.130 0.00 0.00 43.04 2.77
7277 11254 6.528537 AATCATGCAAGGCACTATAACAAA 57.471 33.333 0.00 0.00 43.04 2.83
7278 11255 6.152492 TCAAATCATGCAAGGCACTATAACAA 59.848 34.615 0.00 0.00 43.04 2.83
7279 11256 5.651576 TCAAATCATGCAAGGCACTATAACA 59.348 36.000 0.00 0.00 43.04 2.41
7280 11257 6.135290 TCAAATCATGCAAGGCACTATAAC 57.865 37.500 0.00 0.00 43.04 1.89
7290 11267 7.268199 TCTTATAGGCTTCAAATCATGCAAG 57.732 36.000 0.00 0.00 0.00 4.01
7489 11469 9.452287 CAAACCAATCCAAGAATCCAAATAATT 57.548 29.630 0.00 0.00 0.00 1.40
7500 11481 5.011943 CCTTCATTCCAAACCAATCCAAGAA 59.988 40.000 0.00 0.00 0.00 2.52
7509 11490 5.319043 AGTACTTCCTTCATTCCAAACCA 57.681 39.130 0.00 0.00 0.00 3.67
7510 11491 6.473758 ACTAGTACTTCCTTCATTCCAAACC 58.526 40.000 0.00 0.00 0.00 3.27
7511 11492 8.529476 TCTACTAGTACTTCCTTCATTCCAAAC 58.471 37.037 0.00 0.00 0.00 2.93
7512 11493 8.660295 TCTACTAGTACTTCCTTCATTCCAAA 57.340 34.615 0.00 0.00 0.00 3.28
7513 11494 8.840200 ATCTACTAGTACTTCCTTCATTCCAA 57.160 34.615 0.00 0.00 0.00 3.53
7514 11495 8.840200 AATCTACTAGTACTTCCTTCATTCCA 57.160 34.615 0.00 0.00 0.00 3.53
7515 11496 9.138596 AGAATCTACTAGTACTTCCTTCATTCC 57.861 37.037 0.00 0.00 0.00 3.01
7516 11497 9.959749 CAGAATCTACTAGTACTTCCTTCATTC 57.040 37.037 0.00 3.22 0.00 2.67
7517 11498 8.919145 CCAGAATCTACTAGTACTTCCTTCATT 58.081 37.037 0.00 0.00 0.00 2.57
7518 11499 7.507616 CCCAGAATCTACTAGTACTTCCTTCAT 59.492 40.741 0.00 0.00 0.00 2.57
7519 11500 6.834451 CCCAGAATCTACTAGTACTTCCTTCA 59.166 42.308 0.00 0.00 0.00 3.02
7520 11501 7.061688 TCCCAGAATCTACTAGTACTTCCTTC 58.938 42.308 0.00 6.83 0.00 3.46
7521 11502 6.982899 TCCCAGAATCTACTAGTACTTCCTT 58.017 40.000 0.00 0.00 0.00 3.36
7522 11503 6.160814 ACTCCCAGAATCTACTAGTACTTCCT 59.839 42.308 0.00 2.21 0.00 3.36
7523 11504 6.263617 CACTCCCAGAATCTACTAGTACTTCC 59.736 46.154 0.00 0.38 0.00 3.46
7524 11505 7.055378 TCACTCCCAGAATCTACTAGTACTTC 58.945 42.308 0.00 5.56 0.00 3.01
7525 11506 6.971340 TCACTCCCAGAATCTACTAGTACTT 58.029 40.000 0.00 0.00 0.00 2.24
7526 11507 6.578313 TCACTCCCAGAATCTACTAGTACT 57.422 41.667 0.00 0.00 0.00 2.73
7527 11508 6.773685 ACATCACTCCCAGAATCTACTAGTAC 59.226 42.308 0.00 0.00 0.00 2.73
7528 11509 6.912426 ACATCACTCCCAGAATCTACTAGTA 58.088 40.000 1.89 1.89 0.00 1.82
7529 11510 5.772004 ACATCACTCCCAGAATCTACTAGT 58.228 41.667 0.00 0.00 0.00 2.57
7530 11511 7.667635 TGATACATCACTCCCAGAATCTACTAG 59.332 40.741 0.00 0.00 0.00 2.57
7531 11512 7.526918 TGATACATCACTCCCAGAATCTACTA 58.473 38.462 0.00 0.00 0.00 1.82
7532 11513 6.377080 TGATACATCACTCCCAGAATCTACT 58.623 40.000 0.00 0.00 0.00 2.57
7533 11514 6.656632 TGATACATCACTCCCAGAATCTAC 57.343 41.667 0.00 0.00 0.00 2.59
7534 11515 6.784473 ACATGATACATCACTCCCAGAATCTA 59.216 38.462 0.00 0.00 40.03 1.98
7535 11516 5.605908 ACATGATACATCACTCCCAGAATCT 59.394 40.000 0.00 0.00 40.03 2.40
7536 11517 5.699915 CACATGATACATCACTCCCAGAATC 59.300 44.000 0.00 0.00 40.03 2.52
7537 11518 5.131642 ACACATGATACATCACTCCCAGAAT 59.868 40.000 0.00 0.00 40.03 2.40
7538 11519 4.471025 ACACATGATACATCACTCCCAGAA 59.529 41.667 0.00 0.00 40.03 3.02
7539 11520 4.033009 ACACATGATACATCACTCCCAGA 58.967 43.478 0.00 0.00 40.03 3.86
7540 11521 4.375272 GACACATGATACATCACTCCCAG 58.625 47.826 0.00 0.00 40.03 4.45
7541 11522 3.181476 CGACACATGATACATCACTCCCA 60.181 47.826 0.00 0.00 40.03 4.37
7542 11523 3.068165 TCGACACATGATACATCACTCCC 59.932 47.826 0.00 0.00 40.03 4.30
7543 11524 4.036852 TCTCGACACATGATACATCACTCC 59.963 45.833 0.00 0.00 40.03 3.85
7544 11525 5.175090 TCTCGACACATGATACATCACTC 57.825 43.478 0.00 0.00 40.03 3.51
7545 11526 5.126222 ACTTCTCGACACATGATACATCACT 59.874 40.000 0.00 0.00 40.03 3.41
7546 11527 5.344066 ACTTCTCGACACATGATACATCAC 58.656 41.667 0.00 0.00 40.03 3.06
7547 11528 5.582689 ACTTCTCGACACATGATACATCA 57.417 39.130 0.00 0.00 41.70 3.07
7548 11529 6.893958 AAACTTCTCGACACATGATACATC 57.106 37.500 0.00 0.00 0.00 3.06
7549 11530 6.477033 GCTAAACTTCTCGACACATGATACAT 59.523 38.462 0.00 0.00 0.00 2.29
7550 11531 5.805486 GCTAAACTTCTCGACACATGATACA 59.195 40.000 0.00 0.00 0.00 2.29
7551 11532 5.805486 TGCTAAACTTCTCGACACATGATAC 59.195 40.000 0.00 0.00 0.00 2.24
7591 11572 8.209917 ACGCTTTTATATTTCTTTACAGAGGG 57.790 34.615 0.00 0.00 0.00 4.30
7615 11596 7.826918 ATCCCTACAGACTAGTGATCTTAAC 57.173 40.000 0.00 0.00 0.00 2.01
7618 11599 7.007723 CCTAATCCCTACAGACTAGTGATCTT 58.992 42.308 0.00 0.00 0.00 2.40
7619 11600 6.333168 TCCTAATCCCTACAGACTAGTGATCT 59.667 42.308 0.00 0.00 0.00 2.75
7628 11609 5.420409 CAAACACTCCTAATCCCTACAGAC 58.580 45.833 0.00 0.00 0.00 3.51
7630 11611 4.225267 ACCAAACACTCCTAATCCCTACAG 59.775 45.833 0.00 0.00 0.00 2.74
7632 11613 4.838904 ACCAAACACTCCTAATCCCTAC 57.161 45.455 0.00 0.00 0.00 3.18
7633 11614 4.600111 ACAACCAAACACTCCTAATCCCTA 59.400 41.667 0.00 0.00 0.00 3.53
7634 11615 3.397955 ACAACCAAACACTCCTAATCCCT 59.602 43.478 0.00 0.00 0.00 4.20
7635 11616 3.506067 CACAACCAAACACTCCTAATCCC 59.494 47.826 0.00 0.00 0.00 3.85
7636 11617 3.506067 CCACAACCAAACACTCCTAATCC 59.494 47.826 0.00 0.00 0.00 3.01
7637 11618 4.142038 ACCACAACCAAACACTCCTAATC 58.858 43.478 0.00 0.00 0.00 1.75
7638 11619 4.178956 ACCACAACCAAACACTCCTAAT 57.821 40.909 0.00 0.00 0.00 1.73
7640 11621 3.655615 AACCACAACCAAACACTCCTA 57.344 42.857 0.00 0.00 0.00 2.94
7642 11623 3.634910 ACATAACCACAACCAAACACTCC 59.365 43.478 0.00 0.00 0.00 3.85
7665 11766 6.644347 ACACTACTATCTCAAATCCAACTGG 58.356 40.000 0.00 0.00 0.00 4.00
7668 11769 7.331193 ACGAAACACTACTATCTCAAATCCAAC 59.669 37.037 0.00 0.00 0.00 3.77
7693 11794 0.877071 TCCTGACAGACGAACGGTAC 59.123 55.000 3.32 0.00 0.00 3.34
7694 11795 1.830279 ATCCTGACAGACGAACGGTA 58.170 50.000 3.32 0.00 0.00 4.02
7695 11796 0.966920 AATCCTGACAGACGAACGGT 59.033 50.000 3.32 0.00 0.00 4.83
7696 11797 1.067846 TCAATCCTGACAGACGAACGG 60.068 52.381 3.32 0.00 0.00 4.44
7697 11798 2.254459 CTCAATCCTGACAGACGAACG 58.746 52.381 3.32 0.00 0.00 3.95
7698 11799 2.989840 CACTCAATCCTGACAGACGAAC 59.010 50.000 3.32 0.00 0.00 3.95
7727 11828 1.475280 CCATTTGCACCTCATGACCTG 59.525 52.381 0.00 0.00 0.00 4.00
7740 11841 3.752747 CCCAAAAATCTGGAACCATTTGC 59.247 43.478 10.38 0.00 38.96 3.68
7741 11842 4.202451 ACCCCAAAAATCTGGAACCATTTG 60.202 41.667 9.39 9.39 38.96 2.32
7742 11843 3.980022 ACCCCAAAAATCTGGAACCATTT 59.020 39.130 0.00 0.00 38.96 2.32
7744 11845 2.905736 CACCCCAAAAATCTGGAACCAT 59.094 45.455 0.00 0.00 38.96 3.55
7745 11846 2.091055 TCACCCCAAAAATCTGGAACCA 60.091 45.455 0.00 0.00 38.96 3.67
7746 11847 2.604139 TCACCCCAAAAATCTGGAACC 58.396 47.619 0.00 0.00 38.96 3.62
7747 11848 4.890158 AATCACCCCAAAAATCTGGAAC 57.110 40.909 0.00 0.00 38.96 3.62
7748 11849 4.657969 ACAAATCACCCCAAAAATCTGGAA 59.342 37.500 0.00 0.00 38.96 3.53
7749 11850 4.040217 CACAAATCACCCCAAAAATCTGGA 59.960 41.667 0.00 0.00 38.96 3.86
7750 11851 4.202346 ACACAAATCACCCCAAAAATCTGG 60.202 41.667 0.00 0.00 36.10 3.86
7751 11852 4.751098 CACACAAATCACCCCAAAAATCTG 59.249 41.667 0.00 0.00 0.00 2.90
7752 11853 4.408596 ACACACAAATCACCCCAAAAATCT 59.591 37.500 0.00 0.00 0.00 2.40
7753 11854 4.702831 ACACACAAATCACCCCAAAAATC 58.297 39.130 0.00 0.00 0.00 2.17
7754 11855 4.769345 ACACACAAATCACCCCAAAAAT 57.231 36.364 0.00 0.00 0.00 1.82
7755 11856 4.559862 AACACACAAATCACCCCAAAAA 57.440 36.364 0.00 0.00 0.00 1.94
7796 11899 2.467566 TCCCTAAGAAACCAACTCGC 57.532 50.000 0.00 0.00 0.00 5.03
7801 11904 5.303333 GGTCAAACATTCCCTAAGAAACCAA 59.697 40.000 0.00 0.00 38.21 3.67
7824 11927 1.287815 TCGTGTGCGAACACCTAGG 59.712 57.895 21.10 7.41 46.86 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.