Multiple sequence alignment - TraesCS3A01G220500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G220500 chr3A 100.000 4967 0 0 1 4967 407422466 407427432 0.000000e+00 9173
1 TraesCS3A01G220500 chr3A 93.814 291 18 0 361 651 697523371 697523081 5.900000e-119 438
2 TraesCS3A01G220500 chr3D 96.300 3892 112 16 679 4557 318575335 318571463 0.000000e+00 6360
3 TraesCS3A01G220500 chr3D 90.524 496 22 13 4464 4951 318571471 318570993 2.520000e-177 632
4 TraesCS3A01G220500 chr3D 88.154 363 34 3 1 362 318575718 318575364 1.650000e-114 424
5 TraesCS3A01G220500 chr3B 95.821 3900 126 24 679 4557 401027646 401031529 0.000000e+00 6264
6 TraesCS3A01G220500 chr3B 92.955 511 27 5 4464 4967 401031521 401032029 0.000000e+00 736
7 TraesCS3A01G220500 chr3B 87.812 361 43 1 2 362 401027250 401027609 5.940000e-114 422
8 TraesCS3A01G220500 chr1A 94.558 294 16 0 358 651 274686077 274685784 5.860000e-124 455
9 TraesCS3A01G220500 chr1A 93.537 294 19 0 358 651 152545883 152545590 5.900000e-119 438
10 TraesCS3A01G220500 chr1A 92.691 301 21 1 352 651 354954617 354954317 2.750000e-117 433
11 TraesCS3A01G220500 chr6A 93.878 294 18 0 358 651 208378280 208378573 1.270000e-120 444
12 TraesCS3A01G220500 chr5A 93.581 296 19 0 356 651 1838954 1838659 4.560000e-120 442
13 TraesCS3A01G220500 chr2A 93.289 298 20 0 356 653 612670009 612669712 1.640000e-119 440
14 TraesCS3A01G220500 chr7A 93.515 293 19 0 359 651 309522380 309522672 2.120000e-118 436
15 TraesCS3A01G220500 chr2B 93.266 297 19 1 356 651 78102307 78102603 2.120000e-118 436


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G220500 chr3A 407422466 407427432 4966 False 9173 9173 100.000000 1 4967 1 chr3A.!!$F1 4966
1 TraesCS3A01G220500 chr3D 318570993 318575718 4725 True 2472 6360 91.659333 1 4951 3 chr3D.!!$R1 4950
2 TraesCS3A01G220500 chr3B 401027250 401032029 4779 False 2474 6264 92.196000 2 4967 3 chr3B.!!$F1 4965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 679 0.174162 GTTACCACCGTGATAGGCGT 59.826 55.0 0.00 0.0 33.69 5.68 F
831 852 0.334676 CAGTCTCTCCCCTCTCACCT 59.665 60.0 0.00 0.0 0.00 4.00 F
1751 1775 0.541764 TTAAGGTTGCCAGCAAGGGG 60.542 55.0 5.07 0.0 36.52 4.79 F
1882 1906 2.113860 TTTCAGGTGAGCTGTATGCC 57.886 50.0 11.78 0.0 44.23 4.40 F
3687 3717 0.320771 CAGTGTCCCTCAAACTCCCG 60.321 60.0 0.00 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 1552 1.202325 TCGTATAAGCAATGACGCGGT 60.202 47.619 12.47 0.00 36.85 5.68 R
1772 1796 2.037251 TGTACCAGTGCTCTTGTCTTCC 59.963 50.000 0.00 0.00 0.00 3.46 R
3621 3651 2.595124 TGAACGACAGCTTGTTCAGA 57.405 45.000 17.52 1.96 46.86 3.27 R
3851 3881 1.474478 CTTCTGCTCTAGCTTCCACGA 59.526 52.381 3.26 0.00 42.66 4.35 R
4939 5074 1.981495 CTTCTTCCACACCCCTCTCTT 59.019 52.381 0.00 0.00 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 2.194212 CCGTCCTGATCCCGTCGAT 61.194 63.158 0.00 0.00 0.00 3.59
103 104 2.359570 ATCCCGTCGATAACCGGTGC 62.360 60.000 8.52 0.00 42.67 5.01
116 117 1.511887 CGGTGCCGATTTTTGCGAG 60.512 57.895 4.35 0.00 42.83 5.03
121 122 2.395360 CCGATTTTTGCGAGGGCGA 61.395 57.895 0.00 0.00 44.10 5.54
123 124 1.635663 CGATTTTTGCGAGGGCGAGT 61.636 55.000 0.00 0.00 44.10 4.18
144 145 0.666913 GATGCTGCTTCAATGGCGAT 59.333 50.000 10.32 0.00 0.00 4.58
145 146 0.666913 ATGCTGCTTCAATGGCGATC 59.333 50.000 0.00 0.00 0.00 3.69
146 147 0.677414 TGCTGCTTCAATGGCGATCA 60.677 50.000 0.00 0.00 0.00 2.92
220 222 1.810755 AGACAGTCGACGCAATGAGTA 59.189 47.619 10.46 0.00 0.00 2.59
225 227 2.052157 GTCGACGCAATGAGTATAGCC 58.948 52.381 0.00 0.00 0.00 3.93
243 245 0.965866 CCGAGACTGGTGGCTAGTGA 60.966 60.000 0.00 0.00 0.00 3.41
246 248 0.178932 AGACTGGTGGCTAGTGACCA 60.179 55.000 12.76 12.76 40.04 4.02
297 299 4.150203 TCGATAGGCGGCGGCAAA 62.150 61.111 34.87 22.62 42.47 3.68
299 301 2.822255 GATAGGCGGCGGCAAACA 60.822 61.111 34.87 17.05 42.47 2.83
334 336 4.531426 TGGGGTTTGGCGGCAGTT 62.531 61.111 12.87 0.00 0.00 3.16
337 339 2.275380 GGGTTTGGCGGCAGTTGAT 61.275 57.895 12.87 0.00 0.00 2.57
351 353 3.058983 GCAGTTGATGACGATGACAAACA 60.059 43.478 0.00 0.00 0.00 2.83
362 364 4.785669 GATGACAAACATCGAGCTAAGG 57.214 45.455 0.00 0.00 44.46 2.69
363 365 2.346803 TGACAAACATCGAGCTAAGGC 58.653 47.619 0.00 0.00 39.06 4.35
364 366 1.666189 GACAAACATCGAGCTAAGGCC 59.334 52.381 0.00 0.00 39.73 5.19
365 367 1.279271 ACAAACATCGAGCTAAGGCCT 59.721 47.619 0.00 0.00 39.73 5.19
366 368 1.936547 CAAACATCGAGCTAAGGCCTC 59.063 52.381 5.23 0.00 39.73 4.70
367 369 0.466124 AACATCGAGCTAAGGCCTCC 59.534 55.000 5.23 0.00 39.73 4.30
368 370 0.397816 ACATCGAGCTAAGGCCTCCT 60.398 55.000 5.23 2.32 39.73 3.69
369 371 0.755686 CATCGAGCTAAGGCCTCCTT 59.244 55.000 5.23 3.40 46.63 3.36
370 372 1.139853 CATCGAGCTAAGGCCTCCTTT 59.860 52.381 5.23 0.00 41.69 3.11
371 373 0.537188 TCGAGCTAAGGCCTCCTTTG 59.463 55.000 5.23 3.23 41.69 2.77
372 374 0.462759 CGAGCTAAGGCCTCCTTTGG 60.463 60.000 5.23 0.00 41.69 3.28
373 375 0.621082 GAGCTAAGGCCTCCTTTGGT 59.379 55.000 5.23 10.54 46.07 3.67
374 376 1.004862 GAGCTAAGGCCTCCTTTGGTT 59.995 52.381 5.23 0.00 44.22 3.67
375 377 1.429299 AGCTAAGGCCTCCTTTGGTTT 59.571 47.619 5.23 0.00 42.36 3.27
376 378 1.546029 GCTAAGGCCTCCTTTGGTTTG 59.454 52.381 5.23 0.00 41.69 2.93
377 379 2.171003 CTAAGGCCTCCTTTGGTTTGG 58.829 52.381 5.23 0.00 41.69 3.28
378 380 0.560688 AAGGCCTCCTTTGGTTTGGA 59.439 50.000 5.23 0.00 41.69 3.53
379 381 0.560688 AGGCCTCCTTTGGTTTGGAA 59.439 50.000 0.00 0.00 31.23 3.53
380 382 0.969149 GGCCTCCTTTGGTTTGGAAG 59.031 55.000 0.00 0.00 31.23 3.46
381 383 1.480498 GGCCTCCTTTGGTTTGGAAGA 60.480 52.381 0.00 0.00 31.23 2.87
382 384 2.316108 GCCTCCTTTGGTTTGGAAGAA 58.684 47.619 0.00 0.00 31.23 2.52
383 385 2.899900 GCCTCCTTTGGTTTGGAAGAAT 59.100 45.455 0.00 0.00 31.23 2.40
384 386 3.324846 GCCTCCTTTGGTTTGGAAGAATT 59.675 43.478 0.00 0.00 31.23 2.17
385 387 4.202357 GCCTCCTTTGGTTTGGAAGAATTT 60.202 41.667 0.00 0.00 31.23 1.82
386 388 5.541845 CCTCCTTTGGTTTGGAAGAATTTC 58.458 41.667 0.00 0.00 31.23 2.17
387 389 5.070313 CCTCCTTTGGTTTGGAAGAATTTCA 59.930 40.000 0.00 0.00 34.90 2.69
388 390 6.239686 CCTCCTTTGGTTTGGAAGAATTTCAT 60.240 38.462 0.00 0.00 34.90 2.57
389 391 7.039082 CCTCCTTTGGTTTGGAAGAATTTCATA 60.039 37.037 0.00 0.00 34.90 2.15
390 392 8.256356 TCCTTTGGTTTGGAAGAATTTCATAA 57.744 30.769 0.00 0.00 34.90 1.90
391 393 8.367156 TCCTTTGGTTTGGAAGAATTTCATAAG 58.633 33.333 0.00 0.00 34.90 1.73
392 394 8.367156 CCTTTGGTTTGGAAGAATTTCATAAGA 58.633 33.333 0.00 0.00 34.90 2.10
393 395 9.762933 CTTTGGTTTGGAAGAATTTCATAAGAA 57.237 29.630 0.00 0.00 34.90 2.52
444 446 6.553953 TTTTTCCTTTAGAGCCTTTTGGTT 57.446 33.333 0.00 0.00 42.99 3.67
445 447 6.553953 TTTTCCTTTAGAGCCTTTTGGTTT 57.446 33.333 0.00 0.00 42.99 3.27
446 448 7.663043 TTTTCCTTTAGAGCCTTTTGGTTTA 57.337 32.000 0.00 0.00 42.99 2.01
447 449 7.849322 TTTCCTTTAGAGCCTTTTGGTTTAT 57.151 32.000 0.00 0.00 42.99 1.40
448 450 8.943594 TTTCCTTTAGAGCCTTTTGGTTTATA 57.056 30.769 0.00 0.00 42.99 0.98
449 451 8.575649 TTCCTTTAGAGCCTTTTGGTTTATAG 57.424 34.615 0.00 0.00 42.99 1.31
450 452 7.116736 TCCTTTAGAGCCTTTTGGTTTATAGG 58.883 38.462 0.00 0.00 42.99 2.57
451 453 7.037153 TCCTTTAGAGCCTTTTGGTTTATAGGA 60.037 37.037 0.00 0.00 42.99 2.94
452 454 7.614192 CCTTTAGAGCCTTTTGGTTTATAGGAA 59.386 37.037 0.00 0.00 42.99 3.36
453 455 9.190317 CTTTAGAGCCTTTTGGTTTATAGGAAT 57.810 33.333 0.00 0.00 42.99 3.01
454 456 8.519799 TTAGAGCCTTTTGGTTTATAGGAATG 57.480 34.615 0.00 0.00 42.99 2.67
455 457 5.893824 AGAGCCTTTTGGTTTATAGGAATGG 59.106 40.000 0.00 0.00 42.99 3.16
456 458 5.837829 AGCCTTTTGGTTTATAGGAATGGA 58.162 37.500 0.00 0.00 42.99 3.41
457 459 6.443832 AGCCTTTTGGTTTATAGGAATGGAT 58.556 36.000 0.00 0.00 42.99 3.41
458 460 6.902974 AGCCTTTTGGTTTATAGGAATGGATT 59.097 34.615 0.00 0.00 42.99 3.01
459 461 7.069950 AGCCTTTTGGTTTATAGGAATGGATTC 59.930 37.037 0.00 0.00 42.99 2.52
460 462 7.726216 CCTTTTGGTTTATAGGAATGGATTCC 58.274 38.462 10.03 10.03 44.60 3.01
493 495 3.493767 GGATTGGTTCCTATCCTCCAC 57.506 52.381 19.71 0.00 41.78 4.02
494 496 3.049344 GGATTGGTTCCTATCCTCCACT 58.951 50.000 19.71 0.00 41.78 4.00
495 497 3.459969 GGATTGGTTCCTATCCTCCACTT 59.540 47.826 19.71 0.00 41.78 3.16
496 498 4.079730 GGATTGGTTCCTATCCTCCACTTT 60.080 45.833 19.71 0.00 41.78 2.66
497 499 5.510430 GATTGGTTCCTATCCTCCACTTTT 58.490 41.667 2.68 0.00 0.00 2.27
498 500 4.569719 TGGTTCCTATCCTCCACTTTTC 57.430 45.455 0.00 0.00 0.00 2.29
499 501 3.913799 TGGTTCCTATCCTCCACTTTTCA 59.086 43.478 0.00 0.00 0.00 2.69
500 502 4.540099 TGGTTCCTATCCTCCACTTTTCAT 59.460 41.667 0.00 0.00 0.00 2.57
501 503 5.729229 TGGTTCCTATCCTCCACTTTTCATA 59.271 40.000 0.00 0.00 0.00 2.15
502 504 6.126768 TGGTTCCTATCCTCCACTTTTCATAG 60.127 42.308 0.00 0.00 0.00 2.23
503 505 6.292150 GTTCCTATCCTCCACTTTTCATAGG 58.708 44.000 0.00 0.00 35.93 2.57
504 506 5.788430 TCCTATCCTCCACTTTTCATAGGA 58.212 41.667 2.01 2.01 39.61 2.94
505 507 6.209774 TCCTATCCTCCACTTTTCATAGGAA 58.790 40.000 3.47 0.00 39.17 3.36
506 508 6.676632 TCCTATCCTCCACTTTTCATAGGAAA 59.323 38.462 0.00 0.00 39.17 3.13
526 528 8.885693 AGGAAAATAAAAATGAGCCTAGACTT 57.114 30.769 0.00 0.00 0.00 3.01
527 529 9.975218 AGGAAAATAAAAATGAGCCTAGACTTA 57.025 29.630 0.00 0.00 0.00 2.24
532 534 9.920946 AATAAAAATGAGCCTAGACTTAATGGA 57.079 29.630 0.00 0.00 0.00 3.41
533 535 9.920946 ATAAAAATGAGCCTAGACTTAATGGAA 57.079 29.630 0.00 0.00 0.00 3.53
534 536 8.650143 AAAAATGAGCCTAGACTTAATGGAAA 57.350 30.769 0.00 0.00 0.00 3.13
535 537 8.650143 AAAATGAGCCTAGACTTAATGGAAAA 57.350 30.769 0.00 0.00 0.00 2.29
536 538 8.650143 AAATGAGCCTAGACTTAATGGAAAAA 57.350 30.769 0.00 0.00 0.00 1.94
537 539 8.829373 AATGAGCCTAGACTTAATGGAAAAAT 57.171 30.769 0.00 0.00 0.00 1.82
538 540 8.829373 ATGAGCCTAGACTTAATGGAAAAATT 57.171 30.769 0.00 0.00 0.00 1.82
539 541 8.281212 TGAGCCTAGACTTAATGGAAAAATTC 57.719 34.615 0.00 0.00 0.00 2.17
553 555 6.785488 GGAAAAATTCCTTTGATGTCAACC 57.215 37.500 1.86 0.00 46.57 3.77
554 556 6.287525 GGAAAAATTCCTTTGATGTCAACCA 58.712 36.000 1.86 0.00 46.57 3.67
555 557 6.765512 GGAAAAATTCCTTTGATGTCAACCAA 59.234 34.615 1.86 0.00 46.57 3.67
556 558 7.281999 GGAAAAATTCCTTTGATGTCAACCAAA 59.718 33.333 1.86 4.41 46.57 3.28
557 559 8.750515 AAAAATTCCTTTGATGTCAACCAAAT 57.249 26.923 0.00 0.00 35.28 2.32
558 560 7.733402 AAATTCCTTTGATGTCAACCAAATG 57.267 32.000 0.00 3.42 35.28 2.32
559 561 6.669125 ATTCCTTTGATGTCAACCAAATGA 57.331 33.333 0.00 5.19 35.28 2.57
581 583 7.921041 TGACATCTCATTTCCTATTCCTACT 57.079 36.000 0.00 0.00 0.00 2.57
582 584 7.957002 TGACATCTCATTTCCTATTCCTACTC 58.043 38.462 0.00 0.00 0.00 2.59
583 585 7.565029 TGACATCTCATTTCCTATTCCTACTCA 59.435 37.037 0.00 0.00 0.00 3.41
584 586 8.503428 ACATCTCATTTCCTATTCCTACTCAT 57.497 34.615 0.00 0.00 0.00 2.90
585 587 9.607333 ACATCTCATTTCCTATTCCTACTCATA 57.393 33.333 0.00 0.00 0.00 2.15
588 590 9.883293 TCTCATTTCCTATTCCTACTCATAAGA 57.117 33.333 0.00 0.00 0.00 2.10
595 597 9.883293 TCCTATTCCTACTCATAAGATTTGAGA 57.117 33.333 7.63 0.00 42.63 3.27
602 604 9.149225 CCTACTCATAAGATTTGAGATACATGC 57.851 37.037 7.63 0.00 42.63 4.06
603 605 7.976135 ACTCATAAGATTTGAGATACATGCC 57.024 36.000 7.63 0.00 42.63 4.40
604 606 7.512130 ACTCATAAGATTTGAGATACATGCCA 58.488 34.615 7.63 0.00 42.63 4.92
605 607 8.162085 ACTCATAAGATTTGAGATACATGCCAT 58.838 33.333 7.63 0.00 42.63 4.40
606 608 8.557592 TCATAAGATTTGAGATACATGCCATC 57.442 34.615 0.00 0.00 0.00 3.51
607 609 8.380867 TCATAAGATTTGAGATACATGCCATCT 58.619 33.333 9.57 9.57 35.43 2.90
608 610 8.666573 CATAAGATTTGAGATACATGCCATCTC 58.333 37.037 22.40 22.40 45.76 2.75
617 619 8.789825 GAGATACATGCCATCTCATTTTCTAT 57.210 34.615 23.49 0.00 45.17 1.98
618 620 9.881649 GAGATACATGCCATCTCATTTTCTATA 57.118 33.333 23.49 0.00 45.17 1.31
677 679 0.174162 GTTACCACCGTGATAGGCGT 59.826 55.000 0.00 0.00 33.69 5.68
702 719 3.551407 GGGAGGATCAGACGGCCC 61.551 72.222 0.00 0.00 36.25 5.80
720 741 0.390860 CCCGCACCCTCTCATCTAAG 59.609 60.000 0.00 0.00 0.00 2.18
787 808 2.695585 ACTCTCAACACCTTCCCTTCT 58.304 47.619 0.00 0.00 0.00 2.85
829 850 1.684869 CCTCAGTCTCTCCCCTCTCAC 60.685 61.905 0.00 0.00 0.00 3.51
831 852 0.334676 CAGTCTCTCCCCTCTCACCT 59.665 60.000 0.00 0.00 0.00 4.00
1100 1121 4.024218 GTGCTACGTCTATCTGGTATTCGT 60.024 45.833 0.00 0.00 0.00 3.85
1145 1166 4.721274 TGACAATCTAGTGATGGGGATTCA 59.279 41.667 0.00 0.00 32.44 2.57
1344 1365 6.074544 AGCGTTAGTAGCTAAATAGACCAG 57.925 41.667 0.00 0.00 44.05 4.00
1460 1483 1.535462 CGATTGCCTGTTCGTCCTTTT 59.465 47.619 0.00 0.00 0.00 2.27
1467 1490 2.032924 CCTGTTCGTCCTTTTTGGTGTC 59.967 50.000 0.00 0.00 37.07 3.67
1497 1520 6.980978 TCGAGTGATGGATTGAACTTATCTTC 59.019 38.462 0.00 0.00 0.00 2.87
1528 1552 3.669536 TGAATGTATCACCAGTTCGCAA 58.330 40.909 0.00 0.00 31.50 4.85
1549 1573 1.855978 CCGCGTCATTGCTTATACGAA 59.144 47.619 4.92 0.00 37.53 3.85
1554 1578 3.544682 CGTCATTGCTTATACGAACGTGA 59.455 43.478 10.14 0.00 37.53 4.35
1558 1582 7.358105 CGTCATTGCTTATACGAACGTGATAAT 60.358 37.037 10.14 0.00 37.53 1.28
1559 1583 8.273557 GTCATTGCTTATACGAACGTGATAATT 58.726 33.333 10.14 0.00 0.00 1.40
1647 1671 3.326006 TCCTCAGACCATATCATGCCTTC 59.674 47.826 0.00 0.00 0.00 3.46
1670 1694 9.090692 CTTCCGCAATTTATTGAAAATGATCTT 57.909 29.630 6.64 0.00 40.14 2.40
1751 1775 0.541764 TTAAGGTTGCCAGCAAGGGG 60.542 55.000 5.07 0.00 36.52 4.79
1772 1796 4.082571 GGGGAAGAATGTGTCATCAAACTG 60.083 45.833 0.00 0.00 0.00 3.16
1859 1883 7.622893 ATCCTGACTTCTTAATTTCTCTTGC 57.377 36.000 0.00 0.00 0.00 4.01
1882 1906 2.113860 TTTCAGGTGAGCTGTATGCC 57.886 50.000 11.78 0.00 44.23 4.40
2278 2302 8.830580 CATGGTATTTGACAAGTAGTATTGAGG 58.169 37.037 0.00 0.00 34.20 3.86
2715 2741 5.843673 TGCACTTCCAGTTGACAAAAATA 57.156 34.783 0.00 0.00 0.00 1.40
2819 2845 8.848474 ATATTGGTGTATGGTATTAGAGTTGC 57.152 34.615 0.00 0.00 0.00 4.17
2965 2991 6.771267 TCAAAGAAGGGGAAACTTTAGTTCTC 59.229 38.462 0.00 0.00 37.25 2.87
3045 3072 7.785033 AGCTTGGTCATGGGATTATTTTTAAG 58.215 34.615 0.00 0.00 0.00 1.85
3201 3231 8.177119 AGTATTTTCCACTTTAAGATGCACAA 57.823 30.769 0.00 0.00 0.00 3.33
3255 3285 5.293319 TGCATGGGATTTATTGAATTGGG 57.707 39.130 0.00 0.00 0.00 4.12
3346 3376 5.999600 TGAGAACATCATATACCCTTGCATG 59.000 40.000 0.00 0.00 31.12 4.06
3449 3479 2.430546 TTCGTTCATGCGGCAAAATT 57.569 40.000 6.82 0.00 0.00 1.82
3514 3544 4.618927 GCATGCCTTTGATAAGCACTTGAA 60.619 41.667 6.36 0.00 0.00 2.69
3621 3651 2.229792 TCTGCATTTTTCGAGCAAGGT 58.770 42.857 0.00 0.00 37.89 3.50
3687 3717 0.320771 CAGTGTCCCTCAAACTCCCG 60.321 60.000 0.00 0.00 0.00 5.14
3851 3881 5.821470 CACAAGAAGAAGCACTGGATGATAT 59.179 40.000 0.00 0.00 0.00 1.63
4141 4176 9.850628 GAATACATATATAAGCCGTAGAACACA 57.149 33.333 0.00 0.00 0.00 3.72
4222 4260 9.391006 TGAGTAATATGTAAAAAGTAGCCAAGG 57.609 33.333 0.00 0.00 0.00 3.61
4248 4286 9.760660 GAAAGAAAGAAAGAAAAAGGAAAAAGC 57.239 29.630 0.00 0.00 0.00 3.51
4250 4288 6.535150 AGAAAGAAAGAAAAAGGAAAAAGCGG 59.465 34.615 0.00 0.00 0.00 5.52
4271 4309 3.328931 GGCAGATCCTATCCAATTCCTGA 59.671 47.826 0.00 0.00 0.00 3.86
4273 4311 5.184711 GCAGATCCTATCCAATTCCTGATC 58.815 45.833 0.00 0.00 0.00 2.92
4305 4343 6.846505 TCCCCATAGATTTGATCAACTAGAGT 59.153 38.462 7.89 0.00 0.00 3.24
4330 4368 7.068593 GTGAAACATCATCCCAGATTGGAAATA 59.931 37.037 0.00 0.00 36.69 1.40
4331 4369 7.618907 TGAAACATCATCCCAGATTGGAAATAA 59.381 33.333 0.00 0.00 40.96 1.40
4389 4427 6.542821 TGAAACTGTGAATTAGAAGGGTCAT 58.457 36.000 0.00 0.00 0.00 3.06
4393 4431 4.843728 TGTGAATTAGAAGGGTCATGTCC 58.156 43.478 0.00 0.00 0.00 4.02
4394 4432 4.536090 TGTGAATTAGAAGGGTCATGTCCT 59.464 41.667 8.93 6.73 35.88 3.85
4395 4433 5.014123 TGTGAATTAGAAGGGTCATGTCCTT 59.986 40.000 18.29 18.29 46.37 3.36
4396 4434 6.214615 TGTGAATTAGAAGGGTCATGTCCTTA 59.785 38.462 18.27 7.98 43.98 2.69
4402 4440 3.567478 AGGGTCATGTCCTTATTGAGC 57.433 47.619 8.93 0.00 37.20 4.26
4406 4444 4.517285 GGTCATGTCCTTATTGAGCAAGA 58.483 43.478 1.28 0.00 37.71 3.02
4428 4466 5.541484 AGAATTTCCAGGAATTTCTGCAAGT 59.459 36.000 27.76 11.35 39.32 3.16
4497 4625 9.553064 CAGCACCCTAGAATAATTATATCCATC 57.447 37.037 0.00 0.00 0.00 3.51
4546 4674 6.455647 TGGGCTAGTAAAATCTCATCATACG 58.544 40.000 0.00 0.00 0.00 3.06
4594 4722 2.868964 TATAGAGGCCCAACAGTCCT 57.131 50.000 0.00 0.00 0.00 3.85
4603 4731 2.944129 CCCAACAGTCCTGAGGAAAAA 58.056 47.619 0.96 0.00 31.38 1.94
4649 4777 1.457346 GGTTCTTCAGCACCCTCATG 58.543 55.000 0.00 0.00 0.00 3.07
4650 4778 0.807496 GTTCTTCAGCACCCTCATGC 59.193 55.000 0.00 0.00 46.50 4.06
4659 4787 3.591196 GCACCCTCATGCAAAATAACA 57.409 42.857 0.00 0.00 45.39 2.41
4660 4788 3.924144 GCACCCTCATGCAAAATAACAA 58.076 40.909 0.00 0.00 45.39 2.83
4696 4824 4.082571 CCAAGTGCATGGTTTTCCTCTTAG 60.083 45.833 0.00 0.00 41.38 2.18
4726 4854 3.609853 TGTGTTGACCCTATCATGAAGC 58.390 45.455 0.00 0.00 37.11 3.86
4767 4896 0.983467 TGCCTAATCCTGTCAGCACA 59.017 50.000 0.00 0.00 0.00 4.57
4850 4980 9.959749 CACTAAGATGGAAGAGTAGTCTTATTC 57.040 37.037 12.87 9.85 43.50 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 0.241481 GCAAAAATCGGCACCGGTTA 59.759 50.000 2.97 0.00 42.37 2.85
103 104 2.100216 CGCCCTCGCAAAAATCGG 59.900 61.111 0.00 0.00 34.03 4.18
116 117 1.986575 GAAGCAGCATCAACTCGCCC 61.987 60.000 0.00 0.00 0.00 6.13
121 122 1.203994 GCCATTGAAGCAGCATCAACT 59.796 47.619 15.09 2.88 39.43 3.16
123 124 0.171679 CGCCATTGAAGCAGCATCAA 59.828 50.000 15.13 15.13 40.76 2.57
220 222 3.221222 GCCACCAGTCTCGGCTAT 58.779 61.111 0.00 0.00 42.78 2.97
225 227 0.171455 GTCACTAGCCACCAGTCTCG 59.829 60.000 0.00 0.00 0.00 4.04
257 259 1.001378 AGCACGCCTCACAAATTTGTC 60.001 47.619 20.85 9.04 39.91 3.18
260 262 0.318955 GCAGCACGCCTCACAAATTT 60.319 50.000 0.00 0.00 32.94 1.82
297 299 1.153978 CGCATTTCGCCATTGCTGT 60.154 52.632 0.00 0.00 37.30 4.40
299 301 2.342650 ACCGCATTTCGCCATTGCT 61.343 52.632 0.00 0.00 37.30 3.91
303 305 3.140141 CCCACCGCATTTCGCCAT 61.140 61.111 0.00 0.00 37.30 4.40
307 309 1.080839 CAAACCCCACCGCATTTCG 60.081 57.895 0.00 0.00 38.08 3.46
351 353 1.139853 CAAAGGAGGCCTTAGCTCGAT 59.860 52.381 6.77 0.00 43.92 3.59
362 364 1.995376 TCTTCCAAACCAAAGGAGGC 58.005 50.000 0.00 0.00 34.91 4.70
363 365 5.070313 TGAAATTCTTCCAAACCAAAGGAGG 59.930 40.000 0.00 0.00 34.91 4.30
364 366 6.160576 TGAAATTCTTCCAAACCAAAGGAG 57.839 37.500 0.00 0.00 34.91 3.69
365 367 6.745794 ATGAAATTCTTCCAAACCAAAGGA 57.254 33.333 0.00 0.00 0.00 3.36
366 368 8.367156 TCTTATGAAATTCTTCCAAACCAAAGG 58.633 33.333 0.00 0.00 0.00 3.11
367 369 9.762933 TTCTTATGAAATTCTTCCAAACCAAAG 57.237 29.630 0.00 0.00 0.00 2.77
421 423 6.553953 AACCAAAAGGCTCTAAAGGAAAAA 57.446 33.333 0.00 0.00 0.00 1.94
422 424 6.553953 AAACCAAAAGGCTCTAAAGGAAAA 57.446 33.333 0.00 0.00 0.00 2.29
423 425 7.849322 ATAAACCAAAAGGCTCTAAAGGAAA 57.151 32.000 0.00 0.00 0.00 3.13
424 426 7.614192 CCTATAAACCAAAAGGCTCTAAAGGAA 59.386 37.037 0.00 0.00 0.00 3.36
425 427 7.037153 TCCTATAAACCAAAAGGCTCTAAAGGA 60.037 37.037 0.00 0.00 0.00 3.36
426 428 7.116736 TCCTATAAACCAAAAGGCTCTAAAGG 58.883 38.462 0.00 0.00 0.00 3.11
427 429 8.575649 TTCCTATAAACCAAAAGGCTCTAAAG 57.424 34.615 0.00 0.00 0.00 1.85
428 430 8.966868 CATTCCTATAAACCAAAAGGCTCTAAA 58.033 33.333 0.00 0.00 0.00 1.85
429 431 7.559897 CCATTCCTATAAACCAAAAGGCTCTAA 59.440 37.037 0.00 0.00 0.00 2.10
430 432 7.060421 CCATTCCTATAAACCAAAAGGCTCTA 58.940 38.462 0.00 0.00 0.00 2.43
431 433 5.893824 CCATTCCTATAAACCAAAAGGCTCT 59.106 40.000 0.00 0.00 0.00 4.09
432 434 5.891551 TCCATTCCTATAAACCAAAAGGCTC 59.108 40.000 0.00 0.00 0.00 4.70
433 435 5.837829 TCCATTCCTATAAACCAAAAGGCT 58.162 37.500 0.00 0.00 0.00 4.58
434 436 6.731292 ATCCATTCCTATAAACCAAAAGGC 57.269 37.500 0.00 0.00 0.00 4.35
474 476 4.779993 AAGTGGAGGATAGGAACCAATC 57.220 45.455 0.00 0.00 34.11 2.67
475 477 5.015178 TGAAAAGTGGAGGATAGGAACCAAT 59.985 40.000 0.00 0.00 34.11 3.16
476 478 4.352595 TGAAAAGTGGAGGATAGGAACCAA 59.647 41.667 0.00 0.00 34.11 3.67
477 479 3.913799 TGAAAAGTGGAGGATAGGAACCA 59.086 43.478 0.00 0.00 0.00 3.67
478 480 4.569719 TGAAAAGTGGAGGATAGGAACC 57.430 45.455 0.00 0.00 0.00 3.62
479 481 6.099845 TCCTATGAAAAGTGGAGGATAGGAAC 59.900 42.308 0.00 0.00 38.86 3.62
480 482 6.209774 TCCTATGAAAAGTGGAGGATAGGAA 58.790 40.000 0.00 0.00 38.86 3.36
481 483 5.788430 TCCTATGAAAAGTGGAGGATAGGA 58.212 41.667 0.00 0.00 39.29 2.94
482 484 6.500589 TTCCTATGAAAAGTGGAGGATAGG 57.499 41.667 0.00 0.00 36.22 2.57
500 502 9.975218 AAGTCTAGGCTCATTTTTATTTTCCTA 57.025 29.630 0.00 0.00 0.00 2.94
501 503 8.885693 AAGTCTAGGCTCATTTTTATTTTCCT 57.114 30.769 0.00 0.00 0.00 3.36
506 508 9.920946 TCCATTAAGTCTAGGCTCATTTTTATT 57.079 29.630 0.00 0.00 0.00 1.40
507 509 9.920946 TTCCATTAAGTCTAGGCTCATTTTTAT 57.079 29.630 0.00 0.00 0.00 1.40
508 510 9.747898 TTTCCATTAAGTCTAGGCTCATTTTTA 57.252 29.630 0.00 0.00 0.00 1.52
509 511 8.650143 TTTCCATTAAGTCTAGGCTCATTTTT 57.350 30.769 0.00 0.00 0.00 1.94
510 512 8.650143 TTTTCCATTAAGTCTAGGCTCATTTT 57.350 30.769 0.00 0.00 0.00 1.82
511 513 8.650143 TTTTTCCATTAAGTCTAGGCTCATTT 57.350 30.769 0.00 0.00 0.00 2.32
512 514 8.829373 ATTTTTCCATTAAGTCTAGGCTCATT 57.171 30.769 0.00 0.00 0.00 2.57
513 515 8.829373 AATTTTTCCATTAAGTCTAGGCTCAT 57.171 30.769 0.00 0.00 0.00 2.90
514 516 8.281212 GAATTTTTCCATTAAGTCTAGGCTCA 57.719 34.615 0.00 0.00 0.00 4.26
531 533 7.784633 TTGGTTGACATCAAAGGAATTTTTC 57.215 32.000 0.00 0.00 37.63 2.29
532 534 8.623030 CATTTGGTTGACATCAAAGGAATTTTT 58.377 29.630 9.43 0.00 36.97 1.94
533 535 7.992033 TCATTTGGTTGACATCAAAGGAATTTT 59.008 29.630 13.20 0.00 39.59 1.82
534 536 7.442062 GTCATTTGGTTGACATCAAAGGAATTT 59.558 33.333 15.68 0.00 42.54 1.82
535 537 6.930722 GTCATTTGGTTGACATCAAAGGAATT 59.069 34.615 15.68 0.00 42.54 2.17
536 538 6.458210 GTCATTTGGTTGACATCAAAGGAAT 58.542 36.000 15.68 0.00 42.54 3.01
537 539 5.841810 GTCATTTGGTTGACATCAAAGGAA 58.158 37.500 15.68 4.09 42.54 3.36
538 540 5.452078 GTCATTTGGTTGACATCAAAGGA 57.548 39.130 12.16 12.16 44.38 3.36
556 558 8.503428 AGTAGGAATAGGAAATGAGATGTCAT 57.497 34.615 0.00 0.00 46.01 3.06
557 559 7.565029 TGAGTAGGAATAGGAAATGAGATGTCA 59.435 37.037 0.00 0.00 37.02 3.58
558 560 7.957002 TGAGTAGGAATAGGAAATGAGATGTC 58.043 38.462 0.00 0.00 0.00 3.06
559 561 7.921041 TGAGTAGGAATAGGAAATGAGATGT 57.079 36.000 0.00 0.00 0.00 3.06
562 564 9.883293 TCTTATGAGTAGGAATAGGAAATGAGA 57.117 33.333 0.00 0.00 0.00 3.27
569 571 9.883293 TCTCAAATCTTATGAGTAGGAATAGGA 57.117 33.333 3.72 0.00 43.77 2.94
576 578 9.149225 GCATGTATCTCAAATCTTATGAGTAGG 57.851 37.037 3.72 0.00 43.77 3.18
577 579 9.149225 GGCATGTATCTCAAATCTTATGAGTAG 57.851 37.037 3.72 0.00 43.77 2.57
578 580 8.650490 TGGCATGTATCTCAAATCTTATGAGTA 58.350 33.333 3.72 0.00 43.77 2.59
579 581 7.512130 TGGCATGTATCTCAAATCTTATGAGT 58.488 34.615 3.72 0.00 43.77 3.41
580 582 7.974482 TGGCATGTATCTCAAATCTTATGAG 57.026 36.000 0.00 0.00 44.53 2.90
581 583 8.380867 AGATGGCATGTATCTCAAATCTTATGA 58.619 33.333 3.81 0.00 29.05 2.15
582 584 8.563123 AGATGGCATGTATCTCAAATCTTATG 57.437 34.615 3.81 0.00 29.05 1.90
583 585 8.789825 GAGATGGCATGTATCTCAAATCTTAT 57.210 34.615 24.83 2.03 46.22 1.73
592 594 8.789825 ATAGAAAATGAGATGGCATGTATCTC 57.210 34.615 23.83 23.83 46.82 2.75
633 635 9.805204 ACCACCCTTATAGAATAGGATTATCAT 57.195 33.333 0.00 0.00 33.13 2.45
634 636 9.629649 AACCACCCTTATAGAATAGGATTATCA 57.370 33.333 0.00 0.00 33.13 2.15
637 639 9.330220 GGTAACCACCCTTATAGAATAGGATTA 57.670 37.037 0.00 0.00 39.11 1.75
638 640 7.797617 TGGTAACCACCCTTATAGAATAGGATT 59.202 37.037 0.00 0.00 45.11 3.01
639 641 7.318401 TGGTAACCACCCTTATAGAATAGGAT 58.682 38.462 0.00 0.00 45.11 3.24
640 642 6.695624 TGGTAACCACCCTTATAGAATAGGA 58.304 40.000 0.00 0.00 45.11 2.94
664 666 2.363276 TCCCACGCCTATCACGGT 60.363 61.111 0.00 0.00 34.00 4.83
666 668 1.360551 CTCTCCCACGCCTATCACG 59.639 63.158 0.00 0.00 0.00 4.35
677 679 0.931250 TCTGATCCTCCCCTCTCCCA 60.931 60.000 0.00 0.00 0.00 4.37
702 719 0.390860 CCTTAGATGAGAGGGTGCGG 59.609 60.000 0.00 0.00 0.00 5.69
764 785 2.127708 AGGGAAGGTGTTGAGAGTTGT 58.872 47.619 0.00 0.00 0.00 3.32
787 808 2.024273 AGGACGAGGAATGTAGGAAGGA 60.024 50.000 0.00 0.00 0.00 3.36
829 850 0.033109 GGATCCTTTGGGTTGGGAGG 60.033 60.000 3.84 0.00 32.28 4.30
831 852 0.479589 AGGGATCCTTTGGGTTGGGA 60.480 55.000 12.58 0.00 0.00 4.37
867 888 2.125512 AGCTCCGAATGTGGCGAC 60.126 61.111 0.00 0.00 0.00 5.19
1100 1121 6.710744 GTCACAGAAACCAAAGAGAATTAGGA 59.289 38.462 0.00 0.00 0.00 2.94
1339 1360 5.904362 AGCTAATTGTGATTTTCCTGGTC 57.096 39.130 0.00 0.00 0.00 4.02
1344 1365 7.063426 GCAACCTTTAGCTAATTGTGATTTTCC 59.937 37.037 16.01 0.00 0.00 3.13
1460 1483 1.068417 CACTCGAACCGGACACCAA 59.932 57.895 9.46 0.00 0.00 3.67
1467 1490 1.134818 TCAATCCATCACTCGAACCGG 60.135 52.381 0.00 0.00 0.00 5.28
1497 1520 8.055279 ACTGGTGATACATTCAAACCAAATAG 57.945 34.615 0.00 0.00 35.70 1.73
1504 1527 4.083537 TGCGAACTGGTGATACATTCAAAC 60.084 41.667 0.00 0.00 35.70 2.93
1528 1552 1.202325 TCGTATAAGCAATGACGCGGT 60.202 47.619 12.47 0.00 36.85 5.68
1647 1671 9.299963 TGTAAGATCATTTTCAATAAATTGCGG 57.700 29.630 0.00 0.00 37.68 5.69
1670 1694 5.454966 TCAGCCCTAGATGTCACTAATGTA 58.545 41.667 0.00 0.00 0.00 2.29
1751 1775 4.761739 TCCAGTTTGATGACACATTCTTCC 59.238 41.667 0.00 0.00 0.00 3.46
1772 1796 2.037251 TGTACCAGTGCTCTTGTCTTCC 59.963 50.000 0.00 0.00 0.00 3.46
1859 1883 3.311871 GCATACAGCTCACCTGAAATGAG 59.688 47.826 11.63 0.00 44.64 2.90
1882 1906 2.641305 CCTTCTCTCAGAAATGCCCTG 58.359 52.381 0.00 0.00 33.19 4.45
2119 2143 6.656632 ATGCAAGATCTTATAACTCGAGGA 57.343 37.500 18.41 4.38 0.00 3.71
2278 2302 5.178996 CCAGATCAAGTAATATGCTCAGCAC 59.821 44.000 0.00 0.00 43.04 4.40
2394 2418 3.186613 CAGTTCTTTCACGGAAGCCTAAC 59.813 47.826 0.00 0.00 0.00 2.34
2485 2509 7.123997 TGACAATCCAAATTACAGGCAACATAT 59.876 33.333 0.00 0.00 41.41 1.78
2640 2666 6.183361 CCTGACTGGATTCATGTAATAGACCA 60.183 42.308 0.00 0.00 38.35 4.02
2733 2759 5.324409 AGTGACTGGCCAAGAAATATTTCA 58.676 37.500 26.02 7.69 39.61 2.69
3045 3072 6.168389 TCGGAGGGAGTAATTTTTAAGACAC 58.832 40.000 0.00 0.00 0.00 3.67
3201 3231 3.009723 CGGAGGTTGCACACAGAATAAT 58.990 45.455 0.00 0.00 0.00 1.28
3346 3376 4.691216 GCTCAAACTGATATATCCCCGAAC 59.309 45.833 10.25 0.00 0.00 3.95
3514 3544 7.177216 TGAAGAACATGAGAAATACAAGGCAAT 59.823 33.333 0.00 0.00 0.00 3.56
3587 3617 3.587797 ATGCAGATTTTGTCTTGCTGG 57.412 42.857 0.00 0.00 34.00 4.85
3621 3651 2.595124 TGAACGACAGCTTGTTCAGA 57.405 45.000 17.52 1.96 46.86 3.27
3687 3717 4.035102 GGTGAGGGTGGAGGTGGC 62.035 72.222 0.00 0.00 0.00 5.01
3735 3765 4.040339 GGAAATTCTGCTTTGAAAGGGGAA 59.960 41.667 7.09 0.00 0.00 3.97
3851 3881 1.474478 CTTCTGCTCTAGCTTCCACGA 59.526 52.381 3.26 0.00 42.66 4.35
4061 4092 1.071814 TACAACAACTCGGGTGGCC 59.928 57.895 0.00 0.00 0.00 5.36
4141 4176 6.879367 AAATTCCAGAATGTTTCCATCCAT 57.121 33.333 0.00 0.00 0.00 3.41
4222 4260 9.760660 GCTTTTTCCTTTTTCTTTCTTTCTTTC 57.239 29.630 0.00 0.00 0.00 2.62
4248 4286 2.304180 AGGAATTGGATAGGATCTGCCG 59.696 50.000 0.00 0.00 43.43 5.69
4250 4288 4.630644 TCAGGAATTGGATAGGATCTGC 57.369 45.455 0.00 0.00 0.00 4.26
4305 4343 4.589647 TCCAATCTGGGATGATGTTTCA 57.410 40.909 0.00 0.00 38.32 2.69
4389 4427 6.009589 TGGAAATTCTTGCTCAATAAGGACA 58.990 36.000 0.00 0.00 0.00 4.02
4393 4431 6.764308 TCCTGGAAATTCTTGCTCAATAAG 57.236 37.500 0.00 0.00 0.00 1.73
4394 4432 7.722949 ATTCCTGGAAATTCTTGCTCAATAA 57.277 32.000 14.03 0.00 0.00 1.40
4395 4433 7.722949 AATTCCTGGAAATTCTTGCTCAATA 57.277 32.000 14.03 0.00 0.00 1.90
4396 4434 6.616237 AATTCCTGGAAATTCTTGCTCAAT 57.384 33.333 14.03 0.00 0.00 2.57
4402 4440 5.786311 TGCAGAAATTCCTGGAAATTCTTG 58.214 37.500 28.72 24.01 39.03 3.02
4406 4444 5.813513 ACTTGCAGAAATTCCTGGAAATT 57.186 34.783 14.03 11.60 42.48 1.82
4428 4466 6.916360 AATGGCAAGATTTTCAGGAAGTTA 57.084 33.333 0.00 0.00 0.00 2.24
4515 4643 6.957631 TGAGATTTTACTAGCCCATCAGAAA 58.042 36.000 0.00 0.00 0.00 2.52
4546 4674 7.873505 CACCTATAGGCAAAGAGGAACTTATAC 59.126 40.741 19.25 0.00 37.56 1.47
4594 4722 3.943671 TTGGGACTGTCTTTTTCCTCA 57.056 42.857 7.85 0.00 0.00 3.86
4649 4777 6.528072 GGACTGCTATGACTTTGTTATTTTGC 59.472 38.462 0.00 0.00 0.00 3.68
4650 4778 7.592938 TGGACTGCTATGACTTTGTTATTTTG 58.407 34.615 0.00 0.00 0.00 2.44
4651 4779 7.759489 TGGACTGCTATGACTTTGTTATTTT 57.241 32.000 0.00 0.00 0.00 1.82
4655 4783 5.700832 CACTTGGACTGCTATGACTTTGTTA 59.299 40.000 0.00 0.00 0.00 2.41
4658 4786 3.120060 GCACTTGGACTGCTATGACTTTG 60.120 47.826 0.00 0.00 0.00 2.77
4659 4787 3.077359 GCACTTGGACTGCTATGACTTT 58.923 45.455 0.00 0.00 0.00 2.66
4660 4788 2.038952 TGCACTTGGACTGCTATGACTT 59.961 45.455 0.00 0.00 35.53 3.01
4726 4854 7.815068 AGGCATACGATATTTTTCTAGCTACTG 59.185 37.037 0.00 0.00 0.00 2.74
4745 4874 3.134458 GTGCTGACAGGATTAGGCATAC 58.866 50.000 4.26 0.00 32.38 2.39
4767 4896 5.126699 AGATCTTCAAATGGCTCTGGAAT 57.873 39.130 0.00 0.00 0.00 3.01
4850 4980 5.735285 TCAAGATAGGTGGATATGCTCTG 57.265 43.478 0.00 0.00 0.00 3.35
4939 5074 1.981495 CTTCTTCCACACCCCTCTCTT 59.019 52.381 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.