Multiple sequence alignment - TraesCS3A01G220400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G220400 chr3A 100.000 3323 0 0 1 3323 406301309 406297987 0.000000e+00 6137.0
1 TraesCS3A01G220400 chr3A 98.684 76 0 1 558 633 6715253 6715179 2.080000e-27 134.0
2 TraesCS3A01G220400 chr3A 98.684 76 0 1 558 633 6726242 6726168 2.080000e-27 134.0
3 TraesCS3A01G220400 chr3D 94.590 2588 83 19 762 3323 319517476 319520032 0.000000e+00 3951.0
4 TraesCS3A01G220400 chr3B 95.300 2468 87 12 739 3192 400652875 400650423 0.000000e+00 3888.0
5 TraesCS3A01G220400 chr3B 96.552 58 2 0 3266 3323 400650422 400650365 2.730000e-16 97.1
6 TraesCS3A01G220400 chr3B 97.368 38 1 0 696 733 30337598 30337561 7.700000e-07 65.8
7 TraesCS3A01G220400 chr4A 93.962 530 23 5 1 524 243202320 243201794 0.000000e+00 793.0
8 TraesCS3A01G220400 chr4A 93.396 530 27 4 1 524 403393260 403393787 0.000000e+00 778.0
9 TraesCS3A01G220400 chr4A 93.084 535 27 7 1 527 149153667 149153135 0.000000e+00 774.0
10 TraesCS3A01G220400 chr4A 92.308 533 31 6 1 526 278053543 278054072 0.000000e+00 749.0
11 TraesCS3A01G220400 chr4A 97.222 36 1 0 693 728 693890015 693890050 9.950000e-06 62.1
12 TraesCS3A01G220400 chr2A 92.830 530 29 6 1 524 312554917 312555443 0.000000e+00 760.0
13 TraesCS3A01G220400 chr2A 92.655 531 28 7 1 524 266574106 266573580 0.000000e+00 754.0
14 TraesCS3A01G220400 chr2A 92.481 532 30 6 1 524 352338818 352339347 0.000000e+00 752.0
15 TraesCS3A01G220400 chr5A 92.655 531 29 7 1 524 80504373 80504900 0.000000e+00 756.0
16 TraesCS3A01G220400 chr5A 91.111 45 4 0 696 740 639563452 639563408 9.950000e-06 62.1
17 TraesCS3A01G220400 chr1A 92.642 530 30 5 1 524 63541656 63542182 0.000000e+00 754.0
18 TraesCS3A01G220400 chr1A 98.701 77 1 0 558 634 100371220 100371296 1.610000e-28 137.0
19 TraesCS3A01G220400 chr7D 100.000 76 0 0 558 633 59728107 59728032 1.240000e-29 141.0
20 TraesCS3A01G220400 chr7D 100.000 76 0 0 558 633 584452661 584452736 1.240000e-29 141.0
21 TraesCS3A01G220400 chr7D 98.684 76 1 0 558 633 53744331 53744256 5.780000e-28 135.0
22 TraesCS3A01G220400 chr7D 86.111 72 8 2 1292 1362 134178487 134178417 3.550000e-10 76.8
23 TraesCS3A01G220400 chr5D 98.701 77 1 0 558 634 488459944 488460020 1.610000e-28 137.0
24 TraesCS3A01G220400 chr4D 98.701 77 1 0 558 634 122571251 122571327 1.610000e-28 137.0
25 TraesCS3A01G220400 chr7A 98.684 76 1 0 558 633 501993131 501993056 5.780000e-28 135.0
26 TraesCS3A01G220400 chr7A 86.111 72 8 2 1292 1362 133058771 133058701 3.550000e-10 76.8
27 TraesCS3A01G220400 chr7B 95.238 42 2 0 696 737 662960086 662960045 2.140000e-07 67.6
28 TraesCS3A01G220400 chr5B 100.000 33 0 0 696 728 681662009 681662041 9.950000e-06 62.1
29 TraesCS3A01G220400 chr2B 97.297 37 0 1 696 732 615357649 615357614 9.950000e-06 62.1
30 TraesCS3A01G220400 chr1B 100.000 33 0 0 696 728 494236538 494236506 9.950000e-06 62.1
31 TraesCS3A01G220400 chr6B 92.857 42 1 2 698 739 5306105 5306144 3.580000e-05 60.2
32 TraesCS3A01G220400 chr4B 89.583 48 3 2 696 743 579401654 579401609 3.580000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G220400 chr3A 406297987 406301309 3322 True 6137.00 6137 100.000 1 3323 1 chr3A.!!$R3 3322
1 TraesCS3A01G220400 chr3D 319517476 319520032 2556 False 3951.00 3951 94.590 762 3323 1 chr3D.!!$F1 2561
2 TraesCS3A01G220400 chr3B 400650365 400652875 2510 True 1992.55 3888 95.926 739 3323 2 chr3B.!!$R2 2584
3 TraesCS3A01G220400 chr4A 243201794 243202320 526 True 793.00 793 93.962 1 524 1 chr4A.!!$R2 523
4 TraesCS3A01G220400 chr4A 403393260 403393787 527 False 778.00 778 93.396 1 524 1 chr4A.!!$F2 523
5 TraesCS3A01G220400 chr4A 149153135 149153667 532 True 774.00 774 93.084 1 527 1 chr4A.!!$R1 526
6 TraesCS3A01G220400 chr4A 278053543 278054072 529 False 749.00 749 92.308 1 526 1 chr4A.!!$F1 525
7 TraesCS3A01G220400 chr2A 312554917 312555443 526 False 760.00 760 92.830 1 524 1 chr2A.!!$F1 523
8 TraesCS3A01G220400 chr2A 266573580 266574106 526 True 754.00 754 92.655 1 524 1 chr2A.!!$R1 523
9 TraesCS3A01G220400 chr2A 352338818 352339347 529 False 752.00 752 92.481 1 524 1 chr2A.!!$F2 523
10 TraesCS3A01G220400 chr5A 80504373 80504900 527 False 756.00 756 92.655 1 524 1 chr5A.!!$F1 523
11 TraesCS3A01G220400 chr1A 63541656 63542182 526 False 754.00 754 92.642 1 524 1 chr1A.!!$F1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 586 0.040646 ACCACCACCTCGGATGTAGA 59.959 55.0 0.0 0.0 38.63 2.59 F
1791 1825 0.675633 AGCAGCAACCACAACAATCC 59.324 50.0 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 1924 0.468029 CATTCCCAGGGCCACCATAC 60.468 60.0 6.18 0.0 40.13 2.39 R
2612 2649 0.458543 AGCACCACATCGCTAAGTCG 60.459 55.0 0.00 0.0 36.50 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
218 221 2.114616 AGTGGGAGCTCGATGAAGATT 58.885 47.619 7.83 0.00 0.00 2.40
289 295 0.609681 GGACGATCGGGGATCTAGCT 60.610 60.000 20.98 0.00 36.96 3.32
398 404 3.740115 AGTGACGATTGTAAGCCAACTT 58.260 40.909 0.00 0.00 40.07 2.66
404 410 7.593644 GTGACGATTGTAAGCCAACTTTTTATT 59.406 33.333 0.00 0.00 37.33 1.40
511 524 2.612972 CGTGGGAGATATAGCCGCATTT 60.613 50.000 0.00 0.00 0.00 2.32
526 539 1.339610 GCATTTGTGGGTGTTACAGCA 59.660 47.619 16.50 0.04 33.07 4.41
527 540 2.607771 GCATTTGTGGGTGTTACAGCAG 60.608 50.000 16.50 0.00 33.07 4.24
528 541 1.028905 TTTGTGGGTGTTACAGCAGC 58.971 50.000 16.50 8.50 33.07 5.25
529 542 1.163420 TTGTGGGTGTTACAGCAGCG 61.163 55.000 16.50 0.00 37.71 5.18
530 543 2.031919 TGGGTGTTACAGCAGCGG 59.968 61.111 16.50 0.00 37.71 5.52
531 544 2.345991 GGGTGTTACAGCAGCGGA 59.654 61.111 16.50 0.00 37.71 5.54
532 545 1.078426 GGGTGTTACAGCAGCGGAT 60.078 57.895 16.50 0.00 37.71 4.18
533 546 1.369091 GGGTGTTACAGCAGCGGATG 61.369 60.000 16.50 0.00 37.71 3.51
534 547 0.673644 GGTGTTACAGCAGCGGATGT 60.674 55.000 13.25 13.25 47.00 3.06
535 548 1.404986 GGTGTTACAGCAGCGGATGTA 60.405 52.381 10.97 10.97 42.91 2.29
538 551 3.752796 TACAGCAGCGGATGTAACC 57.247 52.632 12.58 0.00 42.91 2.85
539 552 0.177141 TACAGCAGCGGATGTAACCC 59.823 55.000 12.58 0.00 42.91 4.11
540 553 1.221840 CAGCAGCGGATGTAACCCT 59.778 57.895 0.00 0.00 0.00 4.34
541 554 0.811616 CAGCAGCGGATGTAACCCTC 60.812 60.000 0.00 0.00 0.00 4.30
542 555 1.883084 GCAGCGGATGTAACCCTCG 60.883 63.158 0.00 0.00 0.00 4.63
543 556 1.813859 CAGCGGATGTAACCCTCGA 59.186 57.895 0.00 0.00 0.00 4.04
544 557 0.174845 CAGCGGATGTAACCCTCGAA 59.825 55.000 0.00 0.00 0.00 3.71
545 558 1.120530 AGCGGATGTAACCCTCGAAT 58.879 50.000 0.00 0.00 0.00 3.34
546 559 1.068741 AGCGGATGTAACCCTCGAATC 59.931 52.381 0.00 0.00 0.00 2.52
547 560 1.767289 CGGATGTAACCCTCGAATCG 58.233 55.000 0.00 0.00 0.00 3.34
548 561 1.066605 CGGATGTAACCCTCGAATCGT 59.933 52.381 1.52 0.00 0.00 3.73
549 562 2.480759 CGGATGTAACCCTCGAATCGTT 60.481 50.000 1.52 0.00 0.00 3.85
550 563 3.528532 GGATGTAACCCTCGAATCGTTT 58.471 45.455 1.52 0.00 0.00 3.60
551 564 3.937079 GGATGTAACCCTCGAATCGTTTT 59.063 43.478 1.52 0.00 0.00 2.43
552 565 4.201783 GGATGTAACCCTCGAATCGTTTTG 60.202 45.833 1.52 0.00 0.00 2.44
553 566 2.481185 TGTAACCCTCGAATCGTTTTGC 59.519 45.455 1.52 0.00 0.00 3.68
554 567 1.600023 AACCCTCGAATCGTTTTGCA 58.400 45.000 1.52 0.00 0.00 4.08
555 568 0.872388 ACCCTCGAATCGTTTTGCAC 59.128 50.000 1.52 0.00 0.00 4.57
556 569 0.168128 CCCTCGAATCGTTTTGCACC 59.832 55.000 1.52 0.00 0.00 5.01
557 570 0.871722 CCTCGAATCGTTTTGCACCA 59.128 50.000 1.52 0.00 0.00 4.17
558 571 1.399727 CCTCGAATCGTTTTGCACCAC 60.400 52.381 1.52 0.00 0.00 4.16
559 572 0.589223 TCGAATCGTTTTGCACCACC 59.411 50.000 1.52 0.00 0.00 4.61
560 573 0.309302 CGAATCGTTTTGCACCACCA 59.691 50.000 0.00 0.00 0.00 4.17
561 574 1.766069 GAATCGTTTTGCACCACCAC 58.234 50.000 0.00 0.00 0.00 4.16
562 575 0.387565 AATCGTTTTGCACCACCACC 59.612 50.000 0.00 0.00 0.00 4.61
563 576 0.467290 ATCGTTTTGCACCACCACCT 60.467 50.000 0.00 0.00 0.00 4.00
564 577 1.098712 TCGTTTTGCACCACCACCTC 61.099 55.000 0.00 0.00 0.00 3.85
565 578 1.358759 GTTTTGCACCACCACCTCG 59.641 57.895 0.00 0.00 0.00 4.63
566 579 1.826054 TTTTGCACCACCACCTCGG 60.826 57.895 0.00 0.00 42.50 4.63
567 580 2.272230 TTTTGCACCACCACCTCGGA 62.272 55.000 0.00 0.00 38.63 4.55
568 581 2.063015 TTTGCACCACCACCTCGGAT 62.063 55.000 0.00 0.00 38.63 4.18
569 582 2.436646 GCACCACCACCTCGGATG 60.437 66.667 0.00 0.00 38.63 3.51
570 583 3.068881 CACCACCACCTCGGATGT 58.931 61.111 0.00 0.00 38.63 3.06
571 584 1.895020 GCACCACCACCTCGGATGTA 61.895 60.000 0.00 0.00 38.63 2.29
572 585 0.175760 CACCACCACCTCGGATGTAG 59.824 60.000 0.00 0.00 38.63 2.74
573 586 0.040646 ACCACCACCTCGGATGTAGA 59.959 55.000 0.00 0.00 38.63 2.59
574 587 1.191535 CCACCACCTCGGATGTAGAA 58.808 55.000 0.00 0.00 38.63 2.10
575 588 1.553248 CCACCACCTCGGATGTAGAAA 59.447 52.381 0.00 0.00 38.63 2.52
576 589 2.027561 CCACCACCTCGGATGTAGAAAA 60.028 50.000 0.00 0.00 38.63 2.29
577 590 3.370527 CCACCACCTCGGATGTAGAAAAT 60.371 47.826 0.00 0.00 38.63 1.82
578 591 4.141801 CCACCACCTCGGATGTAGAAAATA 60.142 45.833 0.00 0.00 38.63 1.40
579 592 5.424757 CACCACCTCGGATGTAGAAAATAA 58.575 41.667 0.00 0.00 38.63 1.40
580 593 6.055588 CACCACCTCGGATGTAGAAAATAAT 58.944 40.000 0.00 0.00 38.63 1.28
581 594 7.214381 CACCACCTCGGATGTAGAAAATAATA 58.786 38.462 0.00 0.00 38.63 0.98
582 595 7.878127 CACCACCTCGGATGTAGAAAATAATAT 59.122 37.037 0.00 0.00 38.63 1.28
583 596 9.096823 ACCACCTCGGATGTAGAAAATAATATA 57.903 33.333 0.00 0.00 38.63 0.86
584 597 9.587772 CCACCTCGGATGTAGAAAATAATATAG 57.412 37.037 0.00 0.00 36.56 1.31
585 598 9.587772 CACCTCGGATGTAGAAAATAATATAGG 57.412 37.037 0.00 0.00 0.00 2.57
586 599 9.322769 ACCTCGGATGTAGAAAATAATATAGGT 57.677 33.333 0.00 0.00 0.00 3.08
587 600 9.587772 CCTCGGATGTAGAAAATAATATAGGTG 57.412 37.037 0.00 0.00 0.00 4.00
613 626 6.490877 AAAAACTGAAAGCGTAAATTCACG 57.509 33.333 0.00 0.00 44.71 4.35
614 627 3.806316 ACTGAAAGCGTAAATTCACGG 57.194 42.857 2.77 0.00 42.18 4.94
615 628 3.395639 ACTGAAAGCGTAAATTCACGGA 58.604 40.909 2.77 0.00 42.18 4.69
616 629 3.810941 ACTGAAAGCGTAAATTCACGGAA 59.189 39.130 2.77 0.00 42.18 4.30
617 630 4.273969 ACTGAAAGCGTAAATTCACGGAAA 59.726 37.500 2.77 0.00 42.18 3.13
618 631 4.778904 TGAAAGCGTAAATTCACGGAAAG 58.221 39.130 2.77 0.00 42.18 2.62
619 632 4.512198 TGAAAGCGTAAATTCACGGAAAGA 59.488 37.500 2.77 0.00 42.18 2.52
620 633 5.007823 TGAAAGCGTAAATTCACGGAAAGAA 59.992 36.000 2.77 0.00 42.18 2.52
621 634 4.663636 AGCGTAAATTCACGGAAAGAAG 57.336 40.909 2.77 0.00 42.18 2.85
622 635 3.120304 AGCGTAAATTCACGGAAAGAAGC 60.120 43.478 2.77 0.00 42.18 3.86
623 636 3.404564 CGTAAATTCACGGAAAGAAGCG 58.595 45.455 0.00 0.00 38.26 4.68
624 637 3.120786 CGTAAATTCACGGAAAGAAGCGT 60.121 43.478 0.00 0.00 38.26 5.07
625 638 4.090354 CGTAAATTCACGGAAAGAAGCGTA 59.910 41.667 0.00 0.00 38.26 4.42
626 639 5.220340 CGTAAATTCACGGAAAGAAGCGTAT 60.220 40.000 0.00 0.00 38.26 3.06
627 640 5.622770 AAATTCACGGAAAGAAGCGTATT 57.377 34.783 0.00 0.00 0.00 1.89
628 641 4.600012 ATTCACGGAAAGAAGCGTATTG 57.400 40.909 0.00 0.00 0.00 1.90
629 642 3.034721 TCACGGAAAGAAGCGTATTGT 57.965 42.857 0.00 0.00 0.00 2.71
630 643 2.734606 TCACGGAAAGAAGCGTATTGTG 59.265 45.455 0.00 0.00 0.00 3.33
631 644 2.734606 CACGGAAAGAAGCGTATTGTGA 59.265 45.455 0.00 0.00 0.00 3.58
632 645 2.735134 ACGGAAAGAAGCGTATTGTGAC 59.265 45.455 0.00 0.00 0.00 3.67
633 646 2.734606 CGGAAAGAAGCGTATTGTGACA 59.265 45.455 0.00 0.00 0.00 3.58
634 647 3.185594 CGGAAAGAAGCGTATTGTGACAA 59.814 43.478 0.00 0.00 0.00 3.18
635 648 4.319190 CGGAAAGAAGCGTATTGTGACAAA 60.319 41.667 0.62 0.00 0.00 2.83
636 649 5.516090 GGAAAGAAGCGTATTGTGACAAAA 58.484 37.500 0.62 0.00 0.00 2.44
637 650 6.149633 GGAAAGAAGCGTATTGTGACAAAAT 58.850 36.000 0.62 0.00 0.00 1.82
638 651 6.640907 GGAAAGAAGCGTATTGTGACAAAATT 59.359 34.615 0.62 0.00 0.00 1.82
639 652 7.806014 GGAAAGAAGCGTATTGTGACAAAATTA 59.194 33.333 0.62 0.00 0.00 1.40
640 653 9.176181 GAAAGAAGCGTATTGTGACAAAATTAA 57.824 29.630 0.62 0.00 0.00 1.40
641 654 9.691362 AAAGAAGCGTATTGTGACAAAATTAAT 57.309 25.926 0.62 0.00 0.00 1.40
642 655 8.895932 AGAAGCGTATTGTGACAAAATTAATC 57.104 30.769 0.62 0.00 0.00 1.75
643 656 7.968405 AGAAGCGTATTGTGACAAAATTAATCC 59.032 33.333 0.62 0.00 0.00 3.01
644 657 6.255215 AGCGTATTGTGACAAAATTAATCCG 58.745 36.000 0.62 0.00 0.00 4.18
645 658 6.025280 GCGTATTGTGACAAAATTAATCCGT 58.975 36.000 0.62 0.00 0.00 4.69
646 659 6.021782 GCGTATTGTGACAAAATTAATCCGTG 60.022 38.462 0.62 0.00 0.00 4.94
647 660 6.021782 CGTATTGTGACAAAATTAATCCGTGC 60.022 38.462 0.62 0.00 0.00 5.34
648 661 5.446143 TTGTGACAAAATTAATCCGTGCT 57.554 34.783 0.00 0.00 0.00 4.40
649 662 5.446143 TGTGACAAAATTAATCCGTGCTT 57.554 34.783 0.00 0.00 0.00 3.91
650 663 5.837437 TGTGACAAAATTAATCCGTGCTTT 58.163 33.333 0.00 0.00 0.00 3.51
651 664 6.971602 TGTGACAAAATTAATCCGTGCTTTA 58.028 32.000 0.00 0.00 0.00 1.85
652 665 7.598278 TGTGACAAAATTAATCCGTGCTTTAT 58.402 30.769 0.00 0.00 0.00 1.40
653 666 8.085296 TGTGACAAAATTAATCCGTGCTTTATT 58.915 29.630 0.00 0.00 0.00 1.40
654 667 8.921670 GTGACAAAATTAATCCGTGCTTTATTT 58.078 29.630 0.00 0.00 0.00 1.40
655 668 9.482627 TGACAAAATTAATCCGTGCTTTATTTT 57.517 25.926 0.00 0.00 0.00 1.82
710 723 8.964476 TTAGGGAAAAGATATGAATGAGACAC 57.036 34.615 0.00 0.00 0.00 3.67
711 724 6.962182 AGGGAAAAGATATGAATGAGACACA 58.038 36.000 0.00 0.00 0.00 3.72
712 725 7.580910 AGGGAAAAGATATGAATGAGACACAT 58.419 34.615 0.00 0.00 41.45 3.21
713 726 8.717717 AGGGAAAAGATATGAATGAGACACATA 58.282 33.333 0.00 0.00 38.38 2.29
714 727 9.512588 GGGAAAAGATATGAATGAGACACATAT 57.487 33.333 0.00 0.00 38.38 1.78
724 737 9.631257 ATGAATGAGACACATATTACCATGAAA 57.369 29.630 0.00 0.00 38.38 2.69
725 738 9.460019 TGAATGAGACACATATTACCATGAAAA 57.540 29.630 0.00 0.00 38.38 2.29
796 809 1.004277 CTCGTGAACGTGTCCAGCTC 61.004 60.000 2.37 0.00 40.80 4.09
840 853 8.785329 TTTTGTCACAAGCACATATATACTGA 57.215 30.769 0.00 0.00 0.00 3.41
841 854 8.424274 TTTGTCACAAGCACATATATACTGAG 57.576 34.615 0.00 0.00 0.00 3.35
842 855 7.346751 TGTCACAAGCACATATATACTGAGA 57.653 36.000 0.00 0.00 0.00 3.27
843 856 7.955918 TGTCACAAGCACATATATACTGAGAT 58.044 34.615 0.00 0.00 0.00 2.75
844 857 8.084684 TGTCACAAGCACATATATACTGAGATC 58.915 37.037 0.00 0.00 0.00 2.75
845 858 7.543868 GTCACAAGCACATATATACTGAGATCC 59.456 40.741 0.00 0.00 0.00 3.36
846 859 6.815641 CACAAGCACATATATACTGAGATCCC 59.184 42.308 0.00 0.00 0.00 3.85
847 860 6.070538 ACAAGCACATATATACTGAGATCCCC 60.071 42.308 0.00 0.00 0.00 4.81
1791 1825 0.675633 AGCAGCAACCACAACAATCC 59.324 50.000 0.00 0.00 0.00 3.01
2012 2046 1.864669 TTGGGCTCAATGGGAAATCC 58.135 50.000 0.00 0.00 0.00 3.01
2048 2082 3.970410 TTCTGCTGGGGCTGGTGG 61.970 66.667 0.00 0.00 39.59 4.61
2056 2090 3.451894 GGGCTGGTGGATTTGGCG 61.452 66.667 0.00 0.00 0.00 5.69
2058 2092 4.481112 GCTGGTGGATTTGGCGCG 62.481 66.667 0.00 0.00 0.00 6.86
2091 2125 1.304052 TGGTTCATTTGGGGGCTCG 60.304 57.895 0.00 0.00 0.00 5.03
2097 2131 0.322456 CATTTGGGGGCTCGTCTCAA 60.322 55.000 0.00 0.00 0.00 3.02
2142 2176 1.355718 ATGGTGGTCTAGGCATGGGG 61.356 60.000 0.00 0.00 0.00 4.96
2343 2377 4.724279 AGGTAATTTCACACCCTTCTGT 57.276 40.909 0.00 0.00 35.25 3.41
2363 2400 7.724305 TCTGTTGTTACTTGCTTTTACTAGG 57.276 36.000 0.00 0.00 0.00 3.02
2381 2418 1.750778 AGGTGAGTGTGCTTGTTTTGG 59.249 47.619 0.00 0.00 0.00 3.28
2404 2441 6.605194 TGGAGTGGCATATTGTAGCAAAATAA 59.395 34.615 0.00 0.00 0.00 1.40
2415 2452 4.693095 TGTAGCAAAATAAGTCGTGCATCA 59.307 37.500 0.00 0.00 39.50 3.07
2426 2463 4.615949 AGTCGTGCATCATAGATGTCTTC 58.384 43.478 8.60 0.00 0.00 2.87
2427 2464 3.738282 GTCGTGCATCATAGATGTCTTCC 59.262 47.826 8.60 0.00 0.00 3.46
2440 2477 9.261180 CATAGATGTCTTCCGCTATTTTCTTAA 57.739 33.333 0.00 0.00 0.00 1.85
2442 2479 8.147642 AGATGTCTTCCGCTATTTTCTTAATG 57.852 34.615 0.00 0.00 0.00 1.90
2443 2480 7.987458 AGATGTCTTCCGCTATTTTCTTAATGA 59.013 33.333 0.00 0.00 0.00 2.57
2444 2481 8.682936 ATGTCTTCCGCTATTTTCTTAATGAT 57.317 30.769 0.00 0.00 0.00 2.45
2445 2482 7.919690 TGTCTTCCGCTATTTTCTTAATGATG 58.080 34.615 0.00 0.00 0.00 3.07
2483 2520 7.750229 ATGTGTTATGCCTGAAATACTATGG 57.250 36.000 0.00 0.00 0.00 2.74
2484 2521 6.658849 TGTGTTATGCCTGAAATACTATGGT 58.341 36.000 0.00 0.00 0.00 3.55
2508 2545 4.511082 GTGTTATGCCTGTTTGCAAATTGT 59.489 37.500 16.21 1.88 45.84 2.71
2511 2548 3.472283 TGCCTGTTTGCAAATTGTGAT 57.528 38.095 16.21 0.00 38.56 3.06
2523 2560 5.141568 GCAAATTGTGATTGTTGCATTGTC 58.858 37.500 2.53 0.00 32.02 3.18
2564 2601 8.943925 GCGTTTTATGTGAATATGTGATGTAAC 58.056 33.333 0.00 0.00 0.00 2.50
2572 2609 7.282901 TGTGAATATGTGATGTAACTGGAATGG 59.717 37.037 0.00 0.00 0.00 3.16
2602 2639 3.027412 TGCCTGGTTTGAACTAGCAAAA 58.973 40.909 2.09 0.00 39.26 2.44
2604 2641 4.830046 TGCCTGGTTTGAACTAGCAAAATA 59.170 37.500 2.09 0.00 39.26 1.40
2611 2648 9.290988 TGGTTTGAACTAGCAAAATATGTAAGA 57.709 29.630 0.00 0.00 39.26 2.10
2612 2649 9.556030 GGTTTGAACTAGCAAAATATGTAAGAC 57.444 33.333 0.00 0.00 39.26 3.01
2648 2686 3.197265 GTGCTGCAAAAGTTGATTGGTT 58.803 40.909 2.77 0.00 0.00 3.67
2672 2710 2.818751 TGGGGTTGCTAGGTTAATGG 57.181 50.000 0.00 0.00 0.00 3.16
2678 2716 4.820173 GGGTTGCTAGGTTAATGGTGTATC 59.180 45.833 0.00 0.00 0.00 2.24
2683 2721 4.506654 GCTAGGTTAATGGTGTATCGTGTG 59.493 45.833 0.00 0.00 0.00 3.82
2709 2748 7.231467 ACATGTTCCATACTTTTCCTGTTAGT 58.769 34.615 0.00 0.00 0.00 2.24
2723 2762 4.695455 TCCTGTTAGTGTGCTATTTGCTTC 59.305 41.667 0.00 0.00 43.37 3.86
2809 2848 4.705507 GCATGATAATCTGATGCATCCCTT 59.294 41.667 23.67 15.54 41.78 3.95
2881 2920 2.756207 CCTTCATGACATGCCATTGTGA 59.244 45.455 10.76 0.00 0.00 3.58
2882 2921 3.193903 CCTTCATGACATGCCATTGTGAA 59.806 43.478 10.76 0.00 0.00 3.18
2927 2966 4.111916 CAAGCTGTTGTTTTTGGACGATT 58.888 39.130 0.00 0.00 0.00 3.34
3080 3119 5.950883 ACAATCTGAGCAATTTCTGTCATG 58.049 37.500 0.00 0.00 0.00 3.07
3178 3217 8.352137 TGATTGATGTGATGAGGTTTTACATT 57.648 30.769 0.00 0.00 32.58 2.71
3184 3223 9.520204 GATGTGATGAGGTTTTACATTTATTGG 57.480 33.333 0.00 0.00 32.58 3.16
3211 3250 6.715280 TGCTAATTCAGTTTCTTCCTCAGAT 58.285 36.000 0.00 0.00 0.00 2.90
3216 3255 3.193691 TCAGTTTCTTCCTCAGATCCGAC 59.806 47.826 0.00 0.00 0.00 4.79
3229 3268 0.037734 ATCCGACACCCTTGGGTTTC 59.962 55.000 8.91 11.57 0.00 2.78
3237 3276 5.123344 CGACACCCTTGGGTTTCTTATTTAG 59.877 44.000 19.19 4.23 0.00 1.85
3270 3309 5.727791 GCCAGAACATTAGCACATTTCGTAG 60.728 44.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.700692 TGGTGGCTAACATACGCAAATAAA 59.299 37.500 0.00 0.00 0.00 1.40
218 221 6.362551 TGAAACGAAACAAAACAACGATCAAA 59.637 30.769 0.00 0.00 0.00 2.69
289 295 7.554476 CCAAAATAAAAGAAGACAACCCCAAAA 59.446 33.333 0.00 0.00 0.00 2.44
371 377 3.684788 GGCTTACAATCGTCACTTCACAT 59.315 43.478 0.00 0.00 0.00 3.21
381 387 7.039993 AGGAATAAAAAGTTGGCTTACAATCGT 60.040 33.333 0.00 0.00 41.95 3.73
511 524 1.596752 CGCTGCTGTAACACCCACA 60.597 57.895 0.00 0.00 0.00 4.17
526 539 1.068741 GATTCGAGGGTTACATCCGCT 59.931 52.381 0.00 0.00 0.00 5.52
527 540 1.499049 GATTCGAGGGTTACATCCGC 58.501 55.000 0.00 0.00 0.00 5.54
528 541 1.066605 ACGATTCGAGGGTTACATCCG 59.933 52.381 13.95 0.00 0.00 4.18
529 542 2.884894 ACGATTCGAGGGTTACATCC 57.115 50.000 13.95 0.00 0.00 3.51
530 543 4.726876 GCAAAACGATTCGAGGGTTACATC 60.727 45.833 13.95 0.00 0.00 3.06
531 544 3.126343 GCAAAACGATTCGAGGGTTACAT 59.874 43.478 13.95 0.00 0.00 2.29
532 545 2.481185 GCAAAACGATTCGAGGGTTACA 59.519 45.455 13.95 0.00 0.00 2.41
533 546 2.481185 TGCAAAACGATTCGAGGGTTAC 59.519 45.455 13.95 0.00 0.00 2.50
534 547 2.481185 GTGCAAAACGATTCGAGGGTTA 59.519 45.455 13.95 0.00 0.00 2.85
535 548 1.265905 GTGCAAAACGATTCGAGGGTT 59.734 47.619 13.95 0.00 0.00 4.11
536 549 0.872388 GTGCAAAACGATTCGAGGGT 59.128 50.000 13.95 0.00 0.00 4.34
537 550 0.168128 GGTGCAAAACGATTCGAGGG 59.832 55.000 13.95 0.58 0.00 4.30
538 551 0.871722 TGGTGCAAAACGATTCGAGG 59.128 50.000 13.95 0.23 0.00 4.63
539 552 1.399727 GGTGGTGCAAAACGATTCGAG 60.400 52.381 13.95 0.98 0.00 4.04
540 553 0.589223 GGTGGTGCAAAACGATTCGA 59.411 50.000 13.95 0.00 0.00 3.71
541 554 0.309302 TGGTGGTGCAAAACGATTCG 59.691 50.000 4.14 4.14 0.00 3.34
542 555 1.601914 GGTGGTGGTGCAAAACGATTC 60.602 52.381 0.00 0.00 0.00 2.52
543 556 0.387565 GGTGGTGGTGCAAAACGATT 59.612 50.000 0.00 0.00 0.00 3.34
544 557 0.467290 AGGTGGTGGTGCAAAACGAT 60.467 50.000 0.00 0.00 0.00 3.73
545 558 1.077357 AGGTGGTGGTGCAAAACGA 60.077 52.632 0.00 0.00 0.00 3.85
546 559 1.358759 GAGGTGGTGGTGCAAAACG 59.641 57.895 0.00 0.00 0.00 3.60
547 560 1.358759 CGAGGTGGTGGTGCAAAAC 59.641 57.895 0.00 0.00 0.00 2.43
548 561 1.826054 CCGAGGTGGTGGTGCAAAA 60.826 57.895 0.00 0.00 0.00 2.44
549 562 2.063015 ATCCGAGGTGGTGGTGCAAA 62.063 55.000 0.00 0.00 39.52 3.68
550 563 2.525124 ATCCGAGGTGGTGGTGCAA 61.525 57.895 0.00 0.00 39.52 4.08
551 564 2.927856 ATCCGAGGTGGTGGTGCA 60.928 61.111 0.00 0.00 39.52 4.57
552 565 1.895020 TACATCCGAGGTGGTGGTGC 61.895 60.000 0.00 0.00 39.52 5.01
553 566 0.175760 CTACATCCGAGGTGGTGGTG 59.824 60.000 0.00 0.00 39.52 4.17
554 567 0.040646 TCTACATCCGAGGTGGTGGT 59.959 55.000 0.00 0.00 39.52 4.16
555 568 1.191535 TTCTACATCCGAGGTGGTGG 58.808 55.000 0.00 0.00 39.52 4.61
556 569 3.328382 TTTTCTACATCCGAGGTGGTG 57.672 47.619 0.00 0.00 39.52 4.17
557 570 5.687166 TTATTTTCTACATCCGAGGTGGT 57.313 39.130 0.00 0.00 39.52 4.16
558 571 9.587772 CTATATTATTTTCTACATCCGAGGTGG 57.412 37.037 0.00 0.00 40.09 4.61
559 572 9.587772 CCTATATTATTTTCTACATCCGAGGTG 57.412 37.037 0.00 0.00 0.00 4.00
560 573 9.322769 ACCTATATTATTTTCTACATCCGAGGT 57.677 33.333 0.00 0.00 0.00 3.85
561 574 9.587772 CACCTATATTATTTTCTACATCCGAGG 57.412 37.037 0.00 0.00 0.00 4.63
590 603 5.457473 CCGTGAATTTACGCTTTCAGTTTTT 59.543 36.000 16.60 0.00 42.44 1.94
591 604 4.973663 CCGTGAATTTACGCTTTCAGTTTT 59.026 37.500 16.60 0.00 42.44 2.43
592 605 4.273969 TCCGTGAATTTACGCTTTCAGTTT 59.726 37.500 16.60 0.00 42.44 2.66
593 606 3.810941 TCCGTGAATTTACGCTTTCAGTT 59.189 39.130 16.60 0.00 42.44 3.16
594 607 3.395639 TCCGTGAATTTACGCTTTCAGT 58.604 40.909 16.60 0.00 42.44 3.41
595 608 4.398549 TTCCGTGAATTTACGCTTTCAG 57.601 40.909 16.60 3.06 42.44 3.02
596 609 4.512198 TCTTTCCGTGAATTTACGCTTTCA 59.488 37.500 16.60 0.00 42.44 2.69
597 610 5.025986 TCTTTCCGTGAATTTACGCTTTC 57.974 39.130 16.60 0.00 42.44 2.62
598 611 5.427036 TTCTTTCCGTGAATTTACGCTTT 57.573 34.783 16.60 0.00 42.44 3.51
599 612 4.612939 GCTTCTTTCCGTGAATTTACGCTT 60.613 41.667 16.60 0.00 42.44 4.68
600 613 3.120304 GCTTCTTTCCGTGAATTTACGCT 60.120 43.478 16.60 0.00 42.44 5.07
601 614 3.161306 GCTTCTTTCCGTGAATTTACGC 58.839 45.455 16.60 0.00 42.44 4.42
602 615 3.120786 ACGCTTCTTTCCGTGAATTTACG 60.121 43.478 15.24 15.24 43.35 3.18
603 616 4.400036 ACGCTTCTTTCCGTGAATTTAC 57.600 40.909 0.00 0.00 36.18 2.01
604 617 6.148150 ACAATACGCTTCTTTCCGTGAATTTA 59.852 34.615 0.00 0.00 38.28 1.40
605 618 5.048991 ACAATACGCTTCTTTCCGTGAATTT 60.049 36.000 0.00 0.00 38.28 1.82
606 619 4.454504 ACAATACGCTTCTTTCCGTGAATT 59.545 37.500 0.00 0.00 38.28 2.17
607 620 4.000988 ACAATACGCTTCTTTCCGTGAAT 58.999 39.130 0.00 0.00 38.28 2.57
608 621 3.185594 CACAATACGCTTCTTTCCGTGAA 59.814 43.478 0.00 0.00 38.28 3.18
609 622 2.734606 CACAATACGCTTCTTTCCGTGA 59.265 45.455 0.00 0.00 38.28 4.35
610 623 2.734606 TCACAATACGCTTCTTTCCGTG 59.265 45.455 0.00 0.00 38.28 4.94
611 624 2.735134 GTCACAATACGCTTCTTTCCGT 59.265 45.455 0.00 0.00 41.11 4.69
612 625 2.734606 TGTCACAATACGCTTCTTTCCG 59.265 45.455 0.00 0.00 0.00 4.30
613 626 4.742438 TTGTCACAATACGCTTCTTTCC 57.258 40.909 0.00 0.00 0.00 3.13
614 627 7.623268 AATTTTGTCACAATACGCTTCTTTC 57.377 32.000 0.00 0.00 0.00 2.62
615 628 9.691362 ATTAATTTTGTCACAATACGCTTCTTT 57.309 25.926 0.00 0.00 0.00 2.52
616 629 9.341899 GATTAATTTTGTCACAATACGCTTCTT 57.658 29.630 0.00 0.00 0.00 2.52
617 630 7.968405 GGATTAATTTTGTCACAATACGCTTCT 59.032 33.333 0.00 0.00 0.00 2.85
618 631 7.044966 CGGATTAATTTTGTCACAATACGCTTC 60.045 37.037 0.00 0.00 0.00 3.86
619 632 6.745450 CGGATTAATTTTGTCACAATACGCTT 59.255 34.615 0.00 0.00 0.00 4.68
620 633 6.128117 ACGGATTAATTTTGTCACAATACGCT 60.128 34.615 0.00 0.00 36.60 5.07
621 634 6.021782 CACGGATTAATTTTGTCACAATACGC 60.022 38.462 0.00 0.00 36.60 4.42
622 635 6.021782 GCACGGATTAATTTTGTCACAATACG 60.022 38.462 0.00 0.00 38.56 3.06
623 636 7.027161 AGCACGGATTAATTTTGTCACAATAC 58.973 34.615 0.00 0.00 0.00 1.89
624 637 7.151999 AGCACGGATTAATTTTGTCACAATA 57.848 32.000 0.00 0.00 0.00 1.90
625 638 6.024552 AGCACGGATTAATTTTGTCACAAT 57.975 33.333 0.00 0.00 0.00 2.71
626 639 5.446143 AGCACGGATTAATTTTGTCACAA 57.554 34.783 0.00 0.00 0.00 3.33
627 640 5.446143 AAGCACGGATTAATTTTGTCACA 57.554 34.783 0.00 0.00 0.00 3.58
628 641 8.460831 AATAAAGCACGGATTAATTTTGTCAC 57.539 30.769 0.00 0.00 0.00 3.67
629 642 9.482627 AAAATAAAGCACGGATTAATTTTGTCA 57.517 25.926 0.00 0.00 0.00 3.58
684 697 9.566432 GTGTCTCATTCATATCTTTTCCCTAAT 57.434 33.333 0.00 0.00 0.00 1.73
685 698 8.548025 TGTGTCTCATTCATATCTTTTCCCTAA 58.452 33.333 0.00 0.00 0.00 2.69
686 699 8.089625 TGTGTCTCATTCATATCTTTTCCCTA 57.910 34.615 0.00 0.00 0.00 3.53
687 700 6.962182 TGTGTCTCATTCATATCTTTTCCCT 58.038 36.000 0.00 0.00 0.00 4.20
688 701 7.814264 ATGTGTCTCATTCATATCTTTTCCC 57.186 36.000 0.00 0.00 32.08 3.97
698 711 9.631257 TTTCATGGTAATATGTGTCTCATTCAT 57.369 29.630 0.00 0.00 37.91 2.57
699 712 9.460019 TTTTCATGGTAATATGTGTCTCATTCA 57.540 29.630 0.00 0.00 37.91 2.57
758 771 5.839239 CACGAGTTGTCTAAAAATTGACGTC 59.161 40.000 9.11 9.11 36.10 4.34
796 809 2.099633 AAAAAGTGCTAACGTGCGTG 57.900 45.000 0.00 0.00 35.36 5.34
839 852 3.576118 TGATTTCTCGATCAGGGGATCTC 59.424 47.826 3.50 0.00 46.36 2.75
840 853 3.581101 TGATTTCTCGATCAGGGGATCT 58.419 45.455 3.50 0.00 46.36 2.75
841 854 4.252073 CATGATTTCTCGATCAGGGGATC 58.748 47.826 0.00 0.00 45.32 3.36
842 855 3.558746 GCATGATTTCTCGATCAGGGGAT 60.559 47.826 0.00 0.00 39.26 3.85
843 856 2.224378 GCATGATTTCTCGATCAGGGGA 60.224 50.000 0.00 0.00 39.26 4.81
844 857 2.149578 GCATGATTTCTCGATCAGGGG 58.850 52.381 0.00 0.00 39.26 4.79
845 858 1.797046 CGCATGATTTCTCGATCAGGG 59.203 52.381 0.00 0.00 39.26 4.45
846 859 1.797046 CCGCATGATTTCTCGATCAGG 59.203 52.381 0.00 0.00 39.26 3.86
847 860 1.194098 GCCGCATGATTTCTCGATCAG 59.806 52.381 0.00 0.00 39.26 2.90
853 866 2.329339 GCGGCCGCATGATTTCTC 59.671 61.111 43.55 11.09 41.49 2.87
1219 1253 2.317609 GGACGAAGAGCTTGCGCAA 61.318 57.895 23.48 23.48 39.10 4.85
1482 1516 4.814294 CCACCTGCGCCGGTAGTC 62.814 72.222 23.79 0.00 34.94 2.59
1587 1621 4.964897 TCTTCAATCTCTCCATAGGAAGCA 59.035 41.667 0.00 0.00 32.47 3.91
1890 1924 0.468029 CATTCCCAGGGCCACCATAC 60.468 60.000 6.18 0.00 40.13 2.39
2012 2046 1.968017 CCCATCCCGGAATGCATCG 60.968 63.158 0.73 0.00 36.56 3.84
2061 2095 3.897122 GAACCACCACCCAGCCCA 61.897 66.667 0.00 0.00 0.00 5.36
2091 2125 1.068055 CCAGCAGCACCAAATTGAGAC 60.068 52.381 0.00 0.00 0.00 3.36
2097 2131 1.477553 CCATACCAGCAGCACCAAAT 58.522 50.000 0.00 0.00 0.00 2.32
2142 2176 1.336125 CGGTATAGTGACGAAGGTCCC 59.664 57.143 0.00 0.00 42.73 4.46
2145 2179 3.004106 GCATACGGTATAGTGACGAAGGT 59.996 47.826 0.00 0.00 0.00 3.50
2151 2185 4.049186 CCTGTTGCATACGGTATAGTGAC 58.951 47.826 0.00 0.00 0.00 3.67
2285 2319 3.071602 CACATTGGGGTACATAGGAGGAG 59.928 52.174 0.00 0.00 0.00 3.69
2292 2326 1.064314 GGTGGCACATTGGGGTACATA 60.064 52.381 20.82 0.00 44.52 2.29
2343 2377 7.225931 CACTCACCTAGTAAAAGCAAGTAACAA 59.774 37.037 0.00 0.00 35.76 2.83
2363 2400 2.423538 ACTCCAAAACAAGCACACTCAC 59.576 45.455 0.00 0.00 0.00 3.51
2381 2418 7.707104 ACTTATTTTGCTACAATATGCCACTC 58.293 34.615 0.00 0.00 0.00 3.51
2404 2441 4.500545 GGAAGACATCTATGATGCACGACT 60.501 45.833 7.39 0.00 0.00 4.18
2426 2463 8.724229 TCATCATCATCATTAAGAAAATAGCGG 58.276 33.333 0.00 0.00 0.00 5.52
2444 2481 9.002600 GGCATAACACATAGTATTTCATCATCA 57.997 33.333 0.00 0.00 0.00 3.07
2445 2482 9.224267 AGGCATAACACATAGTATTTCATCATC 57.776 33.333 0.00 0.00 0.00 2.92
2483 2520 2.791383 TGCAAACAGGCATAACACAC 57.209 45.000 0.00 0.00 39.25 3.82
2484 2521 3.808466 TTTGCAAACAGGCATAACACA 57.192 38.095 8.05 0.00 44.48 3.72
2508 2545 3.824151 CATGACGACAATGCAACAATCA 58.176 40.909 0.00 0.00 0.00 2.57
2511 2548 1.608109 AGCATGACGACAATGCAACAA 59.392 42.857 18.76 0.00 43.25 2.83
2523 2560 2.866510 CGCAAACGCAGCATGACG 60.867 61.111 0.00 0.00 39.69 4.35
2564 2601 1.340248 GGCAGCAATCATCCATTCCAG 59.660 52.381 0.00 0.00 0.00 3.86
2572 2609 1.820519 TCAAACCAGGCAGCAATCATC 59.179 47.619 0.00 0.00 0.00 2.92
2602 2639 6.143496 CACATCGCTAAGTCGTCTTACATAT 58.857 40.000 0.00 0.00 35.36 1.78
2604 2641 4.352039 CACATCGCTAAGTCGTCTTACAT 58.648 43.478 0.00 0.00 35.36 2.29
2611 2648 0.736325 GCACCACATCGCTAAGTCGT 60.736 55.000 0.00 0.00 0.00 4.34
2612 2649 0.458543 AGCACCACATCGCTAAGTCG 60.459 55.000 0.00 0.00 36.50 4.18
2648 2686 1.676248 AACCTAGCAACCCCATACCA 58.324 50.000 0.00 0.00 0.00 3.25
2672 2710 3.322369 TGGAACATGTCACACGATACAC 58.678 45.455 0.00 0.00 0.00 2.90
2782 2821 4.841443 TGCATCAGATTATCATGCCAAC 57.159 40.909 12.82 0.00 41.97 3.77
2809 2848 6.183360 ACACAAACACAATACCATTTAGTGCA 60.183 34.615 0.00 0.00 33.69 4.57
2812 2851 7.341445 ACACACAAACACAATACCATTTAGT 57.659 32.000 0.00 0.00 0.00 2.24
2863 2902 4.281435 ACTTTTCACAATGGCATGTCATGA 59.719 37.500 14.76 5.71 0.00 3.07
2881 2920 6.097554 TGGTCACAAATCATGTACCAACTTTT 59.902 34.615 0.00 0.00 41.46 2.27
2882 2921 5.596361 TGGTCACAAATCATGTACCAACTTT 59.404 36.000 0.00 0.00 41.46 2.66
2927 2966 4.389890 AAATCAACAACAGCAAAGCTCA 57.610 36.364 0.00 0.00 36.40 4.26
3080 3119 4.141574 TGGGCCCATTACAATACTCTGTAC 60.142 45.833 24.45 0.00 31.52 2.90
3178 3217 7.775053 AGAAACTGAATTAGCAACCCAATAA 57.225 32.000 0.00 0.00 0.00 1.40
3184 3223 5.473504 TGAGGAAGAAACTGAATTAGCAACC 59.526 40.000 0.00 0.00 0.00 3.77
3237 3276 5.973565 GTGCTAATGTTCTGGCATTATGAAC 59.026 40.000 9.65 9.65 39.64 3.18
3252 3291 5.351465 CAGGTTCTACGAAATGTGCTAATGT 59.649 40.000 0.00 0.00 0.00 2.71
3270 3309 5.107065 CGTGGAAATGTCTAGTTTCAGGTTC 60.107 44.000 6.63 5.45 37.32 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.