Multiple sequence alignment - TraesCS3A01G219600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G219600 chr3A 100.000 2844 0 0 1 2844 404198201 404201044 0.000000e+00 5252.0
1 TraesCS3A01G219600 chr3A 88.535 157 17 1 260 415 510656030 510655874 3.740000e-44 189.0
2 TraesCS3A01G219600 chr3A 83.750 80 7 5 1 80 547373090 547373163 1.410000e-08 71.3
3 TraesCS3A01G219600 chr3B 93.443 1891 82 17 971 2844 398964035 398965900 0.000000e+00 2767.0
4 TraesCS3A01G219600 chr3B 89.019 428 40 4 529 951 463090856 463091281 9.030000e-145 523.0
5 TraesCS3A01G219600 chr3B 100.000 28 0 0 2683 2710 499450037 499450064 5.000000e-03 52.8
6 TraesCS3A01G219600 chr3D 94.152 1556 49 12 1193 2725 320824215 320822679 0.000000e+00 2331.0
7 TraesCS3A01G219600 chr3D 89.598 423 41 3 530 952 416138936 416139355 4.170000e-148 534.0
8 TraesCS3A01G219600 chr3D 94.949 198 8 2 968 1164 320825023 320824827 2.750000e-80 309.0
9 TraesCS3A01G219600 chr3D 89.172 157 16 1 260 415 614342215 614342371 8.040000e-46 195.0
10 TraesCS3A01G219600 chr3D 89.552 134 11 3 2713 2844 320821765 320821633 1.750000e-37 167.0
11 TraesCS3A01G219600 chr3D 83.448 145 20 3 2699 2843 281911892 281911752 6.390000e-27 132.0
12 TraesCS3A01G219600 chr6A 93.976 415 21 3 531 945 556709596 556709186 2.410000e-175 625.0
13 TraesCS3A01G219600 chr6A 88.732 426 44 4 530 955 573146815 573146394 4.200000e-143 518.0
14 TraesCS3A01G219600 chr6A 87.097 155 19 1 260 414 48263391 48263544 1.050000e-39 174.0
15 TraesCS3A01G219600 chr6D 90.071 423 39 3 530 951 447511179 447511599 1.930000e-151 545.0
16 TraesCS3A01G219600 chr6D 81.169 154 20 6 2256 2401 336989786 336989938 6.440000e-22 115.0
17 TraesCS3A01G219600 chr6D 76.974 152 24 9 2259 2402 320695810 320695958 3.040000e-10 76.8
18 TraesCS3A01G219600 chr5B 89.074 421 42 3 531 951 306404214 306403798 1.170000e-143 520.0
19 TraesCS3A01G219600 chr5B 87.654 162 20 0 254 415 706364597 706364758 3.740000e-44 189.0
20 TraesCS3A01G219600 chr2B 89.125 423 38 8 531 951 632563000 632562584 1.170000e-143 520.0
21 TraesCS3A01G219600 chr2B 90.244 164 14 2 260 421 415353864 415354027 2.220000e-51 213.0
22 TraesCS3A01G219600 chr2B 85.185 135 18 2 2710 2843 300267463 300267596 1.370000e-28 137.0
23 TraesCS3A01G219600 chr2B 100.000 29 0 0 274 302 571520819 571520791 1.000000e-03 54.7
24 TraesCS3A01G219600 chr2A 88.889 423 43 4 531 952 718112097 718112516 4.200000e-143 518.0
25 TraesCS3A01G219600 chr2A 87.407 135 15 2 2710 2843 306178113 306178246 1.360000e-33 154.0
26 TraesCS3A01G219600 chr7B 88.046 435 46 6 524 958 618156801 618157229 7.030000e-141 510.0
27 TraesCS3A01G219600 chr1B 90.446 157 13 2 260 415 294425831 294425676 3.710000e-49 206.0
28 TraesCS3A01G219600 chr1D 90.714 140 12 1 277 415 18987821 18987960 4.840000e-43 185.0
29 TraesCS3A01G219600 chr1D 90.076 131 12 1 2714 2844 144450940 144450811 4.870000e-38 169.0
30 TraesCS3A01G219600 chr1D 92.188 64 4 1 316 378 453501106 453501043 3.900000e-14 89.8
31 TraesCS3A01G219600 chr5A 87.821 156 18 1 260 414 401501576 401501731 6.260000e-42 182.0
32 TraesCS3A01G219600 chr5D 86.154 130 17 1 2716 2844 423259672 423259801 3.820000e-29 139.0
33 TraesCS3A01G219600 chr4A 87.200 125 13 3 2714 2836 710251960 710252083 3.820000e-29 139.0
34 TraesCS3A01G219600 chr4A 80.000 155 19 10 2256 2402 717962187 717962037 1.390000e-18 104.0
35 TraesCS3A01G219600 chr2D 85.185 135 18 2 2710 2843 215848441 215848574 1.370000e-28 137.0
36 TraesCS3A01G219600 chr2D 97.297 37 1 0 1 37 20064050 20064014 2.370000e-06 63.9
37 TraesCS3A01G219600 chr2D 96.970 33 0 1 4 36 526932065 526932034 1.000000e-03 54.7
38 TraesCS3A01G219600 chr1A 79.870 154 17 10 2259 2402 116711291 116711440 1.800000e-17 100.0
39 TraesCS3A01G219600 chr7A 85.507 69 7 3 2256 2322 5091781 5091714 5.080000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G219600 chr3A 404198201 404201044 2843 False 5252.000000 5252 100.000000 1 2844 1 chr3A.!!$F1 2843
1 TraesCS3A01G219600 chr3B 398964035 398965900 1865 False 2767.000000 2767 93.443000 971 2844 1 chr3B.!!$F1 1873
2 TraesCS3A01G219600 chr3D 320821633 320825023 3390 True 935.666667 2331 92.884333 968 2844 3 chr3D.!!$R2 1876

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 930 0.035458 ACCTGTAGCACCACAAGCTC 59.965 55.0 0.0 0.0 42.32 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2618 3218 0.179009 GCCATTGGAGATGCCTAGCA 60.179 55.0 6.95 0.0 44.86 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 9.810545 TTTTAACAAAAGATCGATGAACCTTTT 57.189 25.926 0.54 9.60 38.81 2.27
60 61 9.810545 TTTAACAAAAGATCGATGAACCTTTTT 57.189 25.926 15.92 8.66 36.90 1.94
97 98 4.522722 TTTTTCAAACGGGTGAACTTGT 57.477 36.364 2.82 0.00 37.24 3.16
98 99 4.522722 TTTTCAAACGGGTGAACTTGTT 57.477 36.364 2.82 0.00 37.24 2.83
99 100 4.522722 TTTCAAACGGGTGAACTTGTTT 57.477 36.364 2.82 0.00 37.24 2.83
100 101 3.768468 TCAAACGGGTGAACTTGTTTC 57.232 42.857 0.00 0.00 32.58 2.78
101 102 3.349022 TCAAACGGGTGAACTTGTTTCT 58.651 40.909 0.00 0.00 34.97 2.52
102 103 3.759618 TCAAACGGGTGAACTTGTTTCTT 59.240 39.130 0.00 0.00 34.97 2.52
103 104 4.218852 TCAAACGGGTGAACTTGTTTCTTT 59.781 37.500 0.00 0.00 34.97 2.52
104 105 5.415077 TCAAACGGGTGAACTTGTTTCTTTA 59.585 36.000 0.00 0.00 34.97 1.85
105 106 5.900865 AACGGGTGAACTTGTTTCTTTAA 57.099 34.783 0.00 0.00 34.97 1.52
106 107 5.900865 ACGGGTGAACTTGTTTCTTTAAA 57.099 34.783 0.00 0.00 34.97 1.52
107 108 6.459670 ACGGGTGAACTTGTTTCTTTAAAT 57.540 33.333 0.00 0.00 34.97 1.40
108 109 6.500910 ACGGGTGAACTTGTTTCTTTAAATC 58.499 36.000 0.00 0.00 34.97 2.17
109 110 6.320418 ACGGGTGAACTTGTTTCTTTAAATCT 59.680 34.615 0.00 0.00 34.97 2.40
110 111 7.147966 ACGGGTGAACTTGTTTCTTTAAATCTT 60.148 33.333 0.00 0.00 34.97 2.40
111 112 7.704899 CGGGTGAACTTGTTTCTTTAAATCTTT 59.295 33.333 0.00 0.00 34.97 2.52
187 188 3.681593 TTTTTCCTACCGGATCAACGA 57.318 42.857 9.46 0.00 39.58 3.85
188 189 2.660189 TTTCCTACCGGATCAACGAC 57.340 50.000 9.46 0.00 39.58 4.34
189 190 1.548081 TTCCTACCGGATCAACGACA 58.452 50.000 9.46 0.00 39.58 4.35
190 191 1.548081 TCCTACCGGATCAACGACAA 58.452 50.000 9.46 0.00 33.30 3.18
191 192 1.894466 TCCTACCGGATCAACGACAAA 59.106 47.619 9.46 0.00 33.30 2.83
192 193 2.299582 TCCTACCGGATCAACGACAAAA 59.700 45.455 9.46 0.00 33.30 2.44
193 194 3.068560 CCTACCGGATCAACGACAAAAA 58.931 45.455 9.46 0.00 35.47 1.94
194 195 3.124636 CCTACCGGATCAACGACAAAAAG 59.875 47.826 9.46 0.00 35.47 2.27
195 196 2.841215 ACCGGATCAACGACAAAAAGA 58.159 42.857 9.46 0.00 35.47 2.52
196 197 2.546789 ACCGGATCAACGACAAAAAGAC 59.453 45.455 9.46 0.00 35.47 3.01
197 198 2.411031 CCGGATCAACGACAAAAAGACG 60.411 50.000 0.00 0.00 41.15 4.18
198 199 2.411031 CGGATCAACGACAAAAAGACGG 60.411 50.000 0.00 0.00 39.69 4.79
199 200 2.803956 GGATCAACGACAAAAAGACGGA 59.196 45.455 0.00 0.00 39.69 4.69
200 201 3.249080 GGATCAACGACAAAAAGACGGAA 59.751 43.478 0.00 0.00 39.69 4.30
201 202 4.260866 GGATCAACGACAAAAAGACGGAAA 60.261 41.667 0.00 0.00 39.69 3.13
202 203 4.681835 TCAACGACAAAAAGACGGAAAA 57.318 36.364 0.00 0.00 39.69 2.29
203 204 5.044428 TCAACGACAAAAAGACGGAAAAA 57.956 34.783 0.00 0.00 39.69 1.94
230 231 4.135153 AGCAAGCGAGCGACCGAT 62.135 61.111 1.05 0.00 40.15 4.18
231 232 3.621394 GCAAGCGAGCGACCGATC 61.621 66.667 0.00 0.00 0.00 3.69
232 233 2.956964 CAAGCGAGCGACCGATCC 60.957 66.667 1.97 0.00 0.00 3.36
233 234 4.554363 AAGCGAGCGACCGATCCG 62.554 66.667 1.97 0.00 0.00 4.18
250 251 4.303853 GCTAAGCGAGCGATCGAA 57.696 55.556 29.29 10.16 42.62 3.71
251 252 2.578369 GCTAAGCGAGCGATCGAAA 58.422 52.632 29.29 9.77 42.62 3.46
252 253 1.132588 GCTAAGCGAGCGATCGAAAT 58.867 50.000 29.29 13.86 42.62 2.17
253 254 1.123396 GCTAAGCGAGCGATCGAAATC 59.877 52.381 29.29 8.96 42.62 2.17
254 255 2.385315 CTAAGCGAGCGATCGAAATCA 58.615 47.619 29.29 5.20 34.64 2.57
255 256 0.924090 AAGCGAGCGATCGAAATCAC 59.076 50.000 29.29 7.71 34.64 3.06
256 257 0.872021 AGCGAGCGATCGAAATCACC 60.872 55.000 29.29 6.90 34.64 4.02
257 258 1.145759 GCGAGCGATCGAAATCACCA 61.146 55.000 29.29 0.00 34.64 4.17
258 259 1.491670 CGAGCGATCGAAATCACCAT 58.508 50.000 20.02 0.00 34.64 3.55
259 260 2.661594 CGAGCGATCGAAATCACCATA 58.338 47.619 20.02 0.00 34.64 2.74
260 261 3.049912 CGAGCGATCGAAATCACCATAA 58.950 45.455 20.02 0.00 34.64 1.90
261 262 3.489416 CGAGCGATCGAAATCACCATAAA 59.511 43.478 20.02 0.00 34.64 1.40
262 263 4.026062 CGAGCGATCGAAATCACCATAAAA 60.026 41.667 20.02 0.00 34.64 1.52
263 264 5.156804 AGCGATCGAAATCACCATAAAAC 57.843 39.130 21.57 0.00 31.76 2.43
264 265 4.876107 AGCGATCGAAATCACCATAAAACT 59.124 37.500 21.57 0.00 31.76 2.66
265 266 5.006746 AGCGATCGAAATCACCATAAAACTC 59.993 40.000 21.57 0.00 31.76 3.01
266 267 5.423717 CGATCGAAATCACCATAAAACTCG 58.576 41.667 10.26 0.00 31.76 4.18
267 268 5.556382 CGATCGAAATCACCATAAAACTCGG 60.556 44.000 10.26 0.00 31.76 4.63
268 269 4.571919 TCGAAATCACCATAAAACTCGGT 58.428 39.130 0.00 0.00 0.00 4.69
269 270 4.998672 TCGAAATCACCATAAAACTCGGTT 59.001 37.500 0.00 0.00 0.00 4.44
270 271 5.470777 TCGAAATCACCATAAAACTCGGTTT 59.529 36.000 0.00 0.00 37.34 3.27
271 272 6.649973 TCGAAATCACCATAAAACTCGGTTTA 59.350 34.615 3.01 0.00 34.43 2.01
272 273 6.959311 CGAAATCACCATAAAACTCGGTTTAG 59.041 38.462 3.01 0.00 34.43 1.85
273 274 6.753107 AATCACCATAAAACTCGGTTTAGG 57.247 37.500 3.01 7.73 34.43 2.69
274 275 4.581868 TCACCATAAAACTCGGTTTAGGG 58.418 43.478 14.58 14.58 45.90 3.53
275 276 4.286549 TCACCATAAAACTCGGTTTAGGGA 59.713 41.667 21.01 1.27 44.15 4.20
276 277 5.005094 CACCATAAAACTCGGTTTAGGGAA 58.995 41.667 21.01 0.00 44.15 3.97
277 278 5.005740 ACCATAAAACTCGGTTTAGGGAAC 58.994 41.667 21.01 0.00 44.15 3.62
299 300 7.578310 AACCTTGTAGAAAGTTCCTAAAACC 57.422 36.000 0.00 0.00 0.00 3.27
300 301 5.761726 ACCTTGTAGAAAGTTCCTAAAACCG 59.238 40.000 0.00 0.00 0.00 4.44
301 302 5.180680 CCTTGTAGAAAGTTCCTAAAACCGG 59.819 44.000 0.00 0.00 0.00 5.28
302 303 5.294734 TGTAGAAAGTTCCTAAAACCGGT 57.705 39.130 0.00 0.00 0.00 5.28
303 304 5.683681 TGTAGAAAGTTCCTAAAACCGGTT 58.316 37.500 15.86 15.86 0.00 4.44
304 305 5.528320 TGTAGAAAGTTCCTAAAACCGGTTG 59.472 40.000 23.08 8.48 0.00 3.77
305 306 3.887110 AGAAAGTTCCTAAAACCGGTTGG 59.113 43.478 23.08 18.18 42.84 3.77
306 307 1.612676 AGTTCCTAAAACCGGTTGGC 58.387 50.000 23.08 6.17 39.70 4.52
307 308 0.599558 GTTCCTAAAACCGGTTGGCC 59.400 55.000 23.08 8.12 39.70 5.36
317 318 3.996614 GGTTGGCCGCACTTATGT 58.003 55.556 0.00 0.00 0.00 2.29
318 319 3.162448 GGTTGGCCGCACTTATGTA 57.838 52.632 0.00 0.00 0.00 2.29
319 320 1.455248 GGTTGGCCGCACTTATGTAA 58.545 50.000 0.00 0.00 0.00 2.41
320 321 1.813786 GGTTGGCCGCACTTATGTAAA 59.186 47.619 0.00 0.00 0.00 2.01
321 322 2.425668 GGTTGGCCGCACTTATGTAAAT 59.574 45.455 0.00 0.00 0.00 1.40
322 323 3.488553 GGTTGGCCGCACTTATGTAAATC 60.489 47.826 0.00 0.00 0.00 2.17
323 324 3.275617 TGGCCGCACTTATGTAAATCT 57.724 42.857 0.00 0.00 0.00 2.40
324 325 3.616219 TGGCCGCACTTATGTAAATCTT 58.384 40.909 0.00 0.00 0.00 2.40
325 326 3.376859 TGGCCGCACTTATGTAAATCTTG 59.623 43.478 0.00 0.00 0.00 3.02
326 327 3.625764 GGCCGCACTTATGTAAATCTTGA 59.374 43.478 0.00 0.00 0.00 3.02
327 328 4.095782 GGCCGCACTTATGTAAATCTTGAA 59.904 41.667 0.00 0.00 0.00 2.69
328 329 5.266242 GCCGCACTTATGTAAATCTTGAAG 58.734 41.667 0.00 0.00 0.00 3.02
329 330 5.163754 GCCGCACTTATGTAAATCTTGAAGT 60.164 40.000 0.00 0.00 0.00 3.01
330 331 6.250819 CCGCACTTATGTAAATCTTGAAGTG 58.749 40.000 7.95 7.95 44.15 3.16
331 332 6.250819 CGCACTTATGTAAATCTTGAAGTGG 58.749 40.000 12.89 2.13 42.47 4.00
332 333 6.555315 GCACTTATGTAAATCTTGAAGTGGG 58.445 40.000 12.89 0.00 42.47 4.61
333 334 6.555315 CACTTATGTAAATCTTGAAGTGGGC 58.445 40.000 4.96 0.00 39.90 5.36
334 335 5.652452 ACTTATGTAAATCTTGAAGTGGGCC 59.348 40.000 0.00 0.00 0.00 5.80
335 336 2.432444 TGTAAATCTTGAAGTGGGCCG 58.568 47.619 0.00 0.00 0.00 6.13
336 337 1.743394 GTAAATCTTGAAGTGGGCCGG 59.257 52.381 0.00 0.00 0.00 6.13
337 338 1.250840 AAATCTTGAAGTGGGCCGGC 61.251 55.000 21.18 21.18 0.00 6.13
338 339 3.645268 ATCTTGAAGTGGGCCGGCC 62.645 63.158 38.57 38.57 0.00 6.13
348 349 3.758931 GGCCGGCCCATGTTTGTC 61.759 66.667 36.64 5.01 0.00 3.18
349 350 4.114997 GCCGGCCCATGTTTGTCG 62.115 66.667 18.11 0.00 0.00 4.35
350 351 4.114997 CCGGCCCATGTTTGTCGC 62.115 66.667 0.00 0.00 0.00 5.19
351 352 3.055719 CGGCCCATGTTTGTCGCT 61.056 61.111 0.00 0.00 0.00 4.93
352 353 2.877691 GGCCCATGTTTGTCGCTC 59.122 61.111 0.00 0.00 0.00 5.03
353 354 2.480555 GCCCATGTTTGTCGCTCG 59.519 61.111 0.00 0.00 0.00 5.03
354 355 2.480555 CCCATGTTTGTCGCTCGC 59.519 61.111 0.00 0.00 0.00 5.03
355 356 2.324330 CCCATGTTTGTCGCTCGCA 61.324 57.895 0.00 0.00 0.00 5.10
356 357 1.647545 CCCATGTTTGTCGCTCGCAT 61.648 55.000 0.00 0.00 0.00 4.73
357 358 0.247814 CCATGTTTGTCGCTCGCATC 60.248 55.000 0.00 0.00 0.00 3.91
358 359 0.584785 CATGTTTGTCGCTCGCATCG 60.585 55.000 0.00 0.00 0.00 3.84
359 360 2.276058 GTTTGTCGCTCGCATCGC 60.276 61.111 0.00 0.00 0.00 4.58
360 361 2.432456 TTTGTCGCTCGCATCGCT 60.432 55.556 0.00 0.00 0.00 4.93
361 362 2.729675 TTTGTCGCTCGCATCGCTG 61.730 57.895 0.00 0.00 0.00 5.18
364 365 4.801624 TCGCTCGCATCGCTGCTT 62.802 61.111 9.85 0.00 46.65 3.91
365 366 3.857854 CGCTCGCATCGCTGCTTT 61.858 61.111 9.85 0.00 46.65 3.51
366 367 2.277120 GCTCGCATCGCTGCTTTG 60.277 61.111 9.85 0.57 46.65 2.77
367 368 3.031964 GCTCGCATCGCTGCTTTGT 62.032 57.895 9.85 0.00 46.65 2.83
368 369 1.225936 CTCGCATCGCTGCTTTGTG 60.226 57.895 9.85 2.06 46.65 3.33
369 370 2.872925 CGCATCGCTGCTTTGTGC 60.873 61.111 9.85 1.95 46.65 4.57
376 377 2.870372 CTGCTTTGTGCGGTAGCC 59.130 61.111 0.00 0.00 46.63 3.93
377 378 2.671619 TGCTTTGTGCGGTAGCCC 60.672 61.111 0.00 0.00 46.63 5.19
388 389 1.880894 GGTAGCCCGAAAGTTTGCC 59.119 57.895 0.00 0.00 0.00 4.52
389 390 1.500396 GTAGCCCGAAAGTTTGCCG 59.500 57.895 0.00 0.00 0.00 5.69
390 391 2.329614 TAGCCCGAAAGTTTGCCGC 61.330 57.895 0.00 0.00 0.00 6.53
391 392 3.972276 GCCCGAAAGTTTGCCGCA 61.972 61.111 0.00 0.00 0.00 5.69
392 393 2.255252 CCCGAAAGTTTGCCGCAG 59.745 61.111 0.00 0.00 0.00 5.18
393 394 2.429069 CCGAAAGTTTGCCGCAGC 60.429 61.111 0.00 0.00 40.48 5.25
409 410 4.954933 GCAAGTGGCGAATAGGGA 57.045 55.556 0.00 0.00 0.00 4.20
410 411 3.403936 GCAAGTGGCGAATAGGGAT 57.596 52.632 0.00 0.00 0.00 3.85
411 412 1.680338 GCAAGTGGCGAATAGGGATT 58.320 50.000 0.00 0.00 0.00 3.01
412 413 2.024414 GCAAGTGGCGAATAGGGATTT 58.976 47.619 0.00 0.00 0.00 2.17
413 414 2.033424 GCAAGTGGCGAATAGGGATTTC 59.967 50.000 0.00 0.00 0.00 2.17
414 415 2.618709 CAAGTGGCGAATAGGGATTTCC 59.381 50.000 0.00 0.00 0.00 3.13
416 417 2.509964 AGTGGCGAATAGGGATTTCCTT 59.490 45.455 0.00 0.00 45.47 3.36
417 418 2.879026 GTGGCGAATAGGGATTTCCTTC 59.121 50.000 0.00 0.00 45.47 3.46
418 419 2.158667 TGGCGAATAGGGATTTCCTTCC 60.159 50.000 0.00 0.00 45.47 3.46
419 420 2.143925 GCGAATAGGGATTTCCTTCCG 58.856 52.381 0.00 0.00 45.47 4.30
420 421 2.767505 CGAATAGGGATTTCCTTCCGG 58.232 52.381 0.00 0.00 45.47 5.14
421 422 2.367567 CGAATAGGGATTTCCTTCCGGA 59.632 50.000 0.00 0.00 45.47 5.14
422 423 3.555168 CGAATAGGGATTTCCTTCCGGAG 60.555 52.174 3.34 0.00 45.47 4.63
423 424 1.129058 TAGGGATTTCCTTCCGGAGC 58.871 55.000 3.34 0.00 45.47 4.70
424 425 1.523938 GGGATTTCCTTCCGGAGCG 60.524 63.158 3.34 0.00 41.25 5.03
425 426 2.180862 GGATTTCCTTCCGGAGCGC 61.181 63.158 3.34 0.00 41.25 5.92
426 427 2.124695 ATTTCCTTCCGGAGCGCC 60.125 61.111 3.34 0.00 41.25 6.53
427 428 2.869503 GATTTCCTTCCGGAGCGCCA 62.870 60.000 3.34 0.00 41.25 5.69
428 429 2.876368 ATTTCCTTCCGGAGCGCCAG 62.876 60.000 3.34 0.00 41.25 4.85
441 442 2.815211 GCCAGCAGTGCGATCGAA 60.815 61.111 21.57 5.06 0.00 3.71
442 443 3.084579 CCAGCAGTGCGATCGAAC 58.915 61.111 21.57 20.24 0.00 3.95
443 444 1.446792 CCAGCAGTGCGATCGAACT 60.447 57.895 23.46 23.46 33.43 3.01
444 445 1.416813 CCAGCAGTGCGATCGAACTC 61.417 60.000 26.18 19.20 30.00 3.01
445 446 0.733909 CAGCAGTGCGATCGAACTCA 60.734 55.000 26.18 7.45 30.00 3.41
446 447 0.457509 AGCAGTGCGATCGAACTCAG 60.458 55.000 26.18 16.73 30.00 3.35
447 448 1.994467 CAGTGCGATCGAACTCAGC 59.006 57.895 26.18 2.40 30.00 4.26
448 449 1.515088 AGTGCGATCGAACTCAGCG 60.515 57.895 23.46 0.00 24.06 5.18
450 451 2.580867 GCGATCGAACTCAGCGCT 60.581 61.111 21.57 2.64 43.85 5.92
451 452 2.572448 GCGATCGAACTCAGCGCTC 61.572 63.158 21.57 0.00 43.85 5.03
452 453 2.282361 CGATCGAACTCAGCGCTCG 61.282 63.158 7.13 8.59 40.20 5.03
453 454 1.226435 GATCGAACTCAGCGCTCGT 60.226 57.895 7.13 4.69 34.27 4.18
454 455 1.467556 GATCGAACTCAGCGCTCGTG 61.468 60.000 7.13 7.16 34.27 4.35
455 456 2.874010 ATCGAACTCAGCGCTCGTGG 62.874 60.000 7.13 4.21 34.27 4.94
456 457 2.811317 GAACTCAGCGCTCGTGGG 60.811 66.667 7.13 0.00 0.00 4.61
475 476 4.720902 CCGCCCATGCCAGTGACA 62.721 66.667 0.00 0.00 0.00 3.58
476 477 3.129502 CGCCCATGCCAGTGACAG 61.130 66.667 0.00 0.00 0.00 3.51
477 478 2.034687 GCCCATGCCAGTGACAGT 59.965 61.111 0.00 0.00 0.00 3.55
478 479 2.338015 GCCCATGCCAGTGACAGTG 61.338 63.158 3.06 3.06 0.00 3.66
479 480 2.338015 CCCATGCCAGTGACAGTGC 61.338 63.158 4.63 1.74 0.00 4.40
480 481 2.683859 CCATGCCAGTGACAGTGCG 61.684 63.158 4.63 0.10 0.00 5.34
481 482 1.668793 CATGCCAGTGACAGTGCGA 60.669 57.895 4.63 0.00 0.00 5.10
482 483 1.375140 ATGCCAGTGACAGTGCGAG 60.375 57.895 4.63 0.00 0.00 5.03
483 484 3.418068 GCCAGTGACAGTGCGAGC 61.418 66.667 4.63 0.00 0.00 5.03
484 485 3.108289 CCAGTGACAGTGCGAGCG 61.108 66.667 4.63 0.00 0.00 5.03
485 486 3.771491 CAGTGACAGTGCGAGCGC 61.771 66.667 8.08 8.08 42.35 5.92
494 495 4.927782 TGCGAGCGCCAGGTTGTT 62.928 61.111 12.70 0.00 41.09 2.83
495 496 2.740826 GCGAGCGCCAGGTTGTTA 60.741 61.111 2.29 0.00 34.56 2.41
496 497 2.322081 GCGAGCGCCAGGTTGTTAA 61.322 57.895 2.29 0.00 34.56 2.01
497 498 1.495951 CGAGCGCCAGGTTGTTAAC 59.504 57.895 2.29 0.00 0.00 2.01
498 499 1.495951 GAGCGCCAGGTTGTTAACG 59.504 57.895 2.29 0.00 0.00 3.18
499 500 1.908066 GAGCGCCAGGTTGTTAACGG 61.908 60.000 2.29 0.00 0.00 4.44
500 501 2.973316 GCGCCAGGTTGTTAACGGG 61.973 63.158 0.00 0.00 0.00 5.28
501 502 2.959372 GCCAGGTTGTTAACGGGC 59.041 61.111 0.26 5.35 42.56 6.13
502 503 2.973316 GCCAGGTTGTTAACGGGCG 61.973 63.158 0.26 0.00 40.86 6.13
503 504 2.559330 CAGGTTGTTAACGGGCGC 59.441 61.111 0.00 0.00 0.00 6.53
504 505 2.670592 AGGTTGTTAACGGGCGCC 60.671 61.111 21.18 21.18 0.00 6.53
505 506 2.670592 GGTTGTTAACGGGCGCCT 60.671 61.111 28.56 9.55 0.00 5.52
506 507 2.559330 GTTGTTAACGGGCGCCTG 59.441 61.111 33.73 33.73 0.00 4.85
507 508 3.358707 TTGTTAACGGGCGCCTGC 61.359 61.111 35.17 19.02 41.71 4.85
508 509 4.627801 TGTTAACGGGCGCCTGCA 62.628 61.111 35.17 21.54 45.35 4.41
509 510 3.358707 GTTAACGGGCGCCTGCAA 61.359 61.111 35.17 25.12 45.35 4.08
510 511 3.358707 TTAACGGGCGCCTGCAAC 61.359 61.111 35.17 12.74 45.35 4.17
520 521 2.821366 CCTGCAACGCTGGCTAGG 60.821 66.667 0.00 0.00 40.48 3.02
521 522 2.265739 CTGCAACGCTGGCTAGGA 59.734 61.111 0.00 0.00 0.00 2.94
522 523 1.812922 CTGCAACGCTGGCTAGGAG 60.813 63.158 0.00 0.00 0.00 3.69
523 524 3.198489 GCAACGCTGGCTAGGAGC 61.198 66.667 0.00 0.00 41.46 4.70
524 525 2.581354 CAACGCTGGCTAGGAGCT 59.419 61.111 0.00 0.00 41.99 4.09
525 526 1.078848 CAACGCTGGCTAGGAGCTT 60.079 57.895 0.00 0.00 41.99 3.74
526 527 1.086634 CAACGCTGGCTAGGAGCTTC 61.087 60.000 0.00 0.00 41.99 3.86
527 528 2.107953 CGCTGGCTAGGAGCTTCC 59.892 66.667 0.00 0.00 41.99 3.46
528 529 2.107953 GCTGGCTAGGAGCTTCCG 59.892 66.667 0.00 0.00 42.75 4.30
529 530 2.818132 CTGGCTAGGAGCTTCCGG 59.182 66.667 0.00 0.00 42.75 5.14
530 531 2.764128 TGGCTAGGAGCTTCCGGG 60.764 66.667 0.00 0.00 42.75 5.73
531 532 3.551407 GGCTAGGAGCTTCCGGGG 61.551 72.222 0.00 0.00 42.75 5.73
532 533 3.551407 GCTAGGAGCTTCCGGGGG 61.551 72.222 0.00 0.00 42.75 5.40
533 534 2.282446 CTAGGAGCTTCCGGGGGA 59.718 66.667 0.00 0.00 42.75 4.81
534 535 1.382695 CTAGGAGCTTCCGGGGGAA 60.383 63.158 0.00 0.00 42.75 3.97
535 536 0.764752 CTAGGAGCTTCCGGGGGAAT 60.765 60.000 0.00 0.00 41.23 3.01
536 537 1.054406 TAGGAGCTTCCGGGGGAATG 61.054 60.000 0.00 0.00 41.23 2.67
537 538 2.680370 GGAGCTTCCGGGGGAATGT 61.680 63.158 0.00 0.00 41.23 2.71
538 539 1.342672 GGAGCTTCCGGGGGAATGTA 61.343 60.000 0.00 0.00 41.23 2.29
539 540 0.765510 GAGCTTCCGGGGGAATGTAT 59.234 55.000 0.00 0.00 41.23 2.29
540 541 0.474184 AGCTTCCGGGGGAATGTATG 59.526 55.000 0.00 0.00 41.23 2.39
541 542 0.182775 GCTTCCGGGGGAATGTATGT 59.817 55.000 0.00 0.00 41.23 2.29
542 543 1.418637 GCTTCCGGGGGAATGTATGTA 59.581 52.381 0.00 0.00 41.23 2.29
543 544 2.550208 GCTTCCGGGGGAATGTATGTAG 60.550 54.545 0.00 0.00 41.23 2.74
544 545 2.482414 TCCGGGGGAATGTATGTAGT 57.518 50.000 0.00 0.00 0.00 2.73
545 546 2.043992 TCCGGGGGAATGTATGTAGTG 58.956 52.381 0.00 0.00 0.00 2.74
546 547 1.542547 CCGGGGGAATGTATGTAGTGC 60.543 57.143 0.00 0.00 0.00 4.40
547 548 1.140052 CGGGGGAATGTATGTAGTGCA 59.860 52.381 0.00 0.00 0.00 4.57
548 549 2.572290 GGGGGAATGTATGTAGTGCAC 58.428 52.381 9.40 9.40 0.00 4.57
549 550 2.172717 GGGGGAATGTATGTAGTGCACT 59.827 50.000 25.12 25.12 0.00 4.40
550 551 3.467803 GGGGAATGTATGTAGTGCACTC 58.532 50.000 25.56 15.44 0.00 3.51
551 552 3.123804 GGGAATGTATGTAGTGCACTCG 58.876 50.000 25.56 0.00 0.00 4.18
552 553 2.540101 GGAATGTATGTAGTGCACTCGC 59.460 50.000 25.56 17.87 39.24 5.03
561 562 2.189257 TGCACTCGCACTTGTGGT 59.811 55.556 2.81 0.00 45.36 4.16
562 563 2.179547 TGCACTCGCACTTGTGGTG 61.180 57.895 2.81 4.03 45.36 4.17
563 564 2.180204 GCACTCGCACTTGTGGTGT 61.180 57.895 2.81 0.00 46.86 4.16
564 565 1.714899 GCACTCGCACTTGTGGTGTT 61.715 55.000 2.81 0.00 46.86 3.32
565 566 1.577468 CACTCGCACTTGTGGTGTTA 58.423 50.000 2.81 0.00 46.86 2.41
566 567 1.260561 CACTCGCACTTGTGGTGTTAC 59.739 52.381 2.81 0.00 46.86 2.50
567 568 0.865769 CTCGCACTTGTGGTGTTACC 59.134 55.000 2.81 0.00 46.86 2.85
568 569 0.876777 TCGCACTTGTGGTGTTACCG 60.877 55.000 2.81 0.00 46.86 4.02
569 570 1.837538 CGCACTTGTGGTGTTACCGG 61.838 60.000 0.00 0.00 46.86 5.28
570 571 0.816421 GCACTTGTGGTGTTACCGGT 60.816 55.000 13.98 13.98 46.86 5.28
571 572 0.941542 CACTTGTGGTGTTACCGGTG 59.058 55.000 19.93 0.00 42.58 4.94
572 573 0.816421 ACTTGTGGTGTTACCGGTGC 60.816 55.000 19.93 10.88 42.58 5.01
573 574 0.816018 CTTGTGGTGTTACCGGTGCA 60.816 55.000 19.93 13.69 42.58 4.57
574 575 0.179015 TTGTGGTGTTACCGGTGCAT 60.179 50.000 19.93 0.00 42.58 3.96
575 576 0.604243 TGTGGTGTTACCGGTGCATC 60.604 55.000 19.93 16.81 42.58 3.91
576 577 1.374885 TGGTGTTACCGGTGCATCG 60.375 57.895 19.93 13.72 42.58 3.84
589 590 5.801350 CGGTGCATCGGATATCATAAAAT 57.199 39.130 12.68 0.00 0.00 1.82
590 591 5.562917 CGGTGCATCGGATATCATAAAATG 58.437 41.667 12.68 2.06 0.00 2.32
591 592 5.122239 CGGTGCATCGGATATCATAAAATGT 59.878 40.000 12.68 0.00 0.00 2.71
592 593 6.348458 CGGTGCATCGGATATCATAAAATGTT 60.348 38.462 12.68 0.00 0.00 2.71
593 594 7.370383 GGTGCATCGGATATCATAAAATGTTT 58.630 34.615 4.83 0.00 0.00 2.83
594 595 7.867403 GGTGCATCGGATATCATAAAATGTTTT 59.133 33.333 4.83 0.00 0.00 2.43
595 596 9.248291 GTGCATCGGATATCATAAAATGTTTTT 57.752 29.630 4.83 0.00 0.00 1.94
629 630 2.875080 AAAATCTAGCACGTTGACGC 57.125 45.000 3.05 0.00 44.43 5.19
630 631 1.790755 AAATCTAGCACGTTGACGCA 58.209 45.000 3.05 0.00 44.43 5.24
631 632 1.790755 AATCTAGCACGTTGACGCAA 58.209 45.000 3.05 0.00 44.43 4.85
632 633 1.068474 ATCTAGCACGTTGACGCAAC 58.932 50.000 11.24 11.24 44.43 4.17
633 634 0.249114 TCTAGCACGTTGACGCAACA 60.249 50.000 18.32 0.00 43.70 3.33
634 635 0.790207 CTAGCACGTTGACGCAACAT 59.210 50.000 18.32 4.88 43.70 2.71
635 636 0.787787 TAGCACGTTGACGCAACATC 59.212 50.000 18.32 9.27 43.70 3.06
636 637 1.157257 AGCACGTTGACGCAACATCA 61.157 50.000 18.32 0.00 43.70 3.07
637 638 0.316607 GCACGTTGACGCAACATCAA 60.317 50.000 18.32 2.97 43.70 2.57
640 641 3.817960 GTTGACGCAACATCAACGT 57.182 47.368 14.97 0.00 44.65 3.99
641 642 2.934107 GTTGACGCAACATCAACGTA 57.066 45.000 14.97 0.00 44.65 3.57
642 643 3.449322 GTTGACGCAACATCAACGTAT 57.551 42.857 14.97 0.00 44.65 3.06
643 644 3.152983 GTTGACGCAACATCAACGTATG 58.847 45.455 14.97 0.00 44.65 2.39
644 645 2.678324 TGACGCAACATCAACGTATGA 58.322 42.857 5.33 4.34 40.69 2.15
659 660 6.794636 TCAACGTATGATGTCACAAAATTTCG 59.205 34.615 0.00 0.00 31.50 3.46
660 661 6.236017 ACGTATGATGTCACAAAATTTCGT 57.764 33.333 0.00 0.00 0.00 3.85
661 662 7.354025 ACGTATGATGTCACAAAATTTCGTA 57.646 32.000 0.00 0.00 0.00 3.43
662 663 7.970384 ACGTATGATGTCACAAAATTTCGTAT 58.030 30.769 0.00 0.00 0.00 3.06
663 664 9.089601 ACGTATGATGTCACAAAATTTCGTATA 57.910 29.630 0.00 0.00 0.00 1.47
664 665 9.909043 CGTATGATGTCACAAAATTTCGTATAA 57.091 29.630 0.00 0.00 0.00 0.98
713 714 8.776376 ACAAAAATGACAAATTTGACTTCAGT 57.224 26.923 24.64 13.75 37.46 3.41
714 715 8.658609 ACAAAAATGACAAATTTGACTTCAGTG 58.341 29.630 24.64 15.68 37.46 3.66
715 716 8.658609 CAAAAATGACAAATTTGACTTCAGTGT 58.341 29.630 24.64 9.51 36.41 3.55
716 717 7.760131 AAATGACAAATTTGACTTCAGTGTG 57.240 32.000 24.64 0.00 0.00 3.82
717 718 6.698008 ATGACAAATTTGACTTCAGTGTGA 57.302 33.333 24.64 0.00 0.00 3.58
718 719 6.698008 TGACAAATTTGACTTCAGTGTGAT 57.302 33.333 24.64 0.00 0.00 3.06
719 720 7.800155 TGACAAATTTGACTTCAGTGTGATA 57.200 32.000 24.64 0.00 0.00 2.15
720 721 8.219546 TGACAAATTTGACTTCAGTGTGATAA 57.780 30.769 24.64 0.00 0.00 1.75
721 722 8.849168 TGACAAATTTGACTTCAGTGTGATAAT 58.151 29.630 24.64 0.00 0.00 1.28
722 723 9.121517 GACAAATTTGACTTCAGTGTGATAATG 57.878 33.333 24.64 0.00 0.00 1.90
723 724 8.084073 ACAAATTTGACTTCAGTGTGATAATGG 58.916 33.333 24.64 0.00 0.00 3.16
724 725 6.764308 ATTTGACTTCAGTGTGATAATGGG 57.236 37.500 0.00 0.00 0.00 4.00
725 726 3.609853 TGACTTCAGTGTGATAATGGGC 58.390 45.455 0.00 0.00 0.00 5.36
726 727 2.945668 GACTTCAGTGTGATAATGGGCC 59.054 50.000 0.00 0.00 0.00 5.80
727 728 2.308570 ACTTCAGTGTGATAATGGGCCA 59.691 45.455 9.61 9.61 0.00 5.36
728 729 3.245229 ACTTCAGTGTGATAATGGGCCAA 60.245 43.478 11.89 0.00 0.00 4.52
729 730 3.448093 TCAGTGTGATAATGGGCCAAA 57.552 42.857 11.89 1.34 0.00 3.28
730 731 3.979911 TCAGTGTGATAATGGGCCAAAT 58.020 40.909 11.89 7.49 0.00 2.32
731 732 3.953612 TCAGTGTGATAATGGGCCAAATC 59.046 43.478 11.89 17.28 0.00 2.17
732 733 3.956199 CAGTGTGATAATGGGCCAAATCT 59.044 43.478 24.45 9.19 0.00 2.40
733 734 5.104151 TCAGTGTGATAATGGGCCAAATCTA 60.104 40.000 24.45 15.14 0.00 1.98
734 735 5.593909 CAGTGTGATAATGGGCCAAATCTAA 59.406 40.000 24.45 14.47 0.00 2.10
735 736 6.096705 CAGTGTGATAATGGGCCAAATCTAAA 59.903 38.462 24.45 12.67 0.00 1.85
736 737 6.322201 AGTGTGATAATGGGCCAAATCTAAAG 59.678 38.462 24.45 0.00 0.00 1.85
737 738 5.068987 TGTGATAATGGGCCAAATCTAAAGC 59.931 40.000 24.45 14.04 0.00 3.51
738 739 4.588528 TGATAATGGGCCAAATCTAAAGCC 59.411 41.667 24.45 0.00 44.99 4.35
742 743 2.967599 GGCCAAATCTAAAGCCCAAG 57.032 50.000 0.00 0.00 39.60 3.61
743 744 2.179427 GGCCAAATCTAAAGCCCAAGT 58.821 47.619 0.00 0.00 39.60 3.16
744 745 2.567169 GGCCAAATCTAAAGCCCAAGTT 59.433 45.455 0.00 0.00 39.60 2.66
745 746 3.767131 GGCCAAATCTAAAGCCCAAGTTA 59.233 43.478 0.00 0.00 39.60 2.24
746 747 4.405680 GGCCAAATCTAAAGCCCAAGTTAT 59.594 41.667 0.00 0.00 39.60 1.89
747 748 5.104941 GGCCAAATCTAAAGCCCAAGTTATT 60.105 40.000 0.00 0.00 39.60 1.40
748 749 6.406370 GCCAAATCTAAAGCCCAAGTTATTT 58.594 36.000 0.00 0.00 0.00 1.40
749 750 6.878923 GCCAAATCTAAAGCCCAAGTTATTTT 59.121 34.615 0.00 0.00 0.00 1.82
750 751 8.038351 GCCAAATCTAAAGCCCAAGTTATTTTA 58.962 33.333 0.00 0.00 0.00 1.52
811 812 9.810545 TTTCGAATTAGGTTTTGAATTTTGACT 57.189 25.926 0.00 0.00 30.88 3.41
812 813 9.810545 TTCGAATTAGGTTTTGAATTTTGACTT 57.189 25.926 0.00 0.00 0.00 3.01
813 814 9.810545 TCGAATTAGGTTTTGAATTTTGACTTT 57.189 25.926 0.00 0.00 0.00 2.66
847 848 9.671279 ATGAGAACTTATATTGATGTTGTGTGA 57.329 29.630 0.00 0.00 0.00 3.58
848 849 9.154847 TGAGAACTTATATTGATGTTGTGTGAG 57.845 33.333 0.00 0.00 0.00 3.51
849 850 9.155975 GAGAACTTATATTGATGTTGTGTGAGT 57.844 33.333 0.00 0.00 0.00 3.41
850 851 8.939929 AGAACTTATATTGATGTTGTGTGAGTG 58.060 33.333 0.00 0.00 0.00 3.51
851 852 8.621532 AACTTATATTGATGTTGTGTGAGTGT 57.378 30.769 0.00 0.00 0.00 3.55
852 853 8.032952 ACTTATATTGATGTTGTGTGAGTGTG 57.967 34.615 0.00 0.00 0.00 3.82
853 854 3.631145 ATTGATGTTGTGTGAGTGTGC 57.369 42.857 0.00 0.00 0.00 4.57
854 855 2.330440 TGATGTTGTGTGAGTGTGCT 57.670 45.000 0.00 0.00 0.00 4.40
855 856 3.467374 TGATGTTGTGTGAGTGTGCTA 57.533 42.857 0.00 0.00 0.00 3.49
856 857 3.802866 TGATGTTGTGTGAGTGTGCTAA 58.197 40.909 0.00 0.00 0.00 3.09
857 858 4.388485 TGATGTTGTGTGAGTGTGCTAAT 58.612 39.130 0.00 0.00 0.00 1.73
858 859 4.821260 TGATGTTGTGTGAGTGTGCTAATT 59.179 37.500 0.00 0.00 0.00 1.40
859 860 5.299028 TGATGTTGTGTGAGTGTGCTAATTT 59.701 36.000 0.00 0.00 0.00 1.82
860 861 5.574891 TGTTGTGTGAGTGTGCTAATTTT 57.425 34.783 0.00 0.00 0.00 1.82
861 862 5.960113 TGTTGTGTGAGTGTGCTAATTTTT 58.040 33.333 0.00 0.00 0.00 1.94
909 910 5.424121 AAAATACAATATGAGCTCGGTGC 57.576 39.130 9.64 0.00 43.29 5.01
910 911 3.751479 ATACAATATGAGCTCGGTGCA 57.249 42.857 9.64 0.00 45.94 4.57
911 912 1.656652 ACAATATGAGCTCGGTGCAC 58.343 50.000 8.80 8.80 45.94 4.57
912 913 0.940126 CAATATGAGCTCGGTGCACC 59.060 55.000 26.78 26.78 45.94 5.01
913 914 0.833287 AATATGAGCTCGGTGCACCT 59.167 50.000 32.28 15.03 45.94 4.00
914 915 0.105593 ATATGAGCTCGGTGCACCTG 59.894 55.000 32.28 24.55 45.94 4.00
915 916 1.257750 TATGAGCTCGGTGCACCTGT 61.258 55.000 32.28 14.55 45.94 4.00
916 917 1.257750 ATGAGCTCGGTGCACCTGTA 61.258 55.000 32.28 17.01 45.94 2.74
917 918 1.153745 GAGCTCGGTGCACCTGTAG 60.154 63.158 32.28 25.23 45.94 2.74
918 919 2.815647 GCTCGGTGCACCTGTAGC 60.816 66.667 32.28 29.81 42.31 3.58
919 920 2.656646 CTCGGTGCACCTGTAGCA 59.343 61.111 32.28 9.90 40.19 3.49
924 925 3.235369 TGCACCTGTAGCACCACA 58.765 55.556 0.00 0.00 37.02 4.17
925 926 1.529309 TGCACCTGTAGCACCACAA 59.471 52.632 0.00 0.00 37.02 3.33
926 927 0.534877 TGCACCTGTAGCACCACAAG 60.535 55.000 0.00 0.00 37.02 3.16
927 928 1.856265 GCACCTGTAGCACCACAAGC 61.856 60.000 0.00 0.00 0.00 4.01
928 929 0.250467 CACCTGTAGCACCACAAGCT 60.250 55.000 0.00 0.00 45.77 3.74
929 930 0.035458 ACCTGTAGCACCACAAGCTC 59.965 55.000 0.00 0.00 42.32 4.09
930 931 0.674895 CCTGTAGCACCACAAGCTCC 60.675 60.000 0.00 0.00 42.32 4.70
931 932 1.005037 TGTAGCACCACAAGCTCCG 60.005 57.895 0.00 0.00 42.32 4.63
932 933 1.741770 GTAGCACCACAAGCTCCGG 60.742 63.158 0.00 0.00 42.32 5.14
933 934 2.214216 TAGCACCACAAGCTCCGGT 61.214 57.895 0.00 0.00 42.32 5.28
935 936 3.357079 CACCACAAGCTCCGGTGC 61.357 66.667 20.71 20.71 43.43 5.01
936 937 3.872603 ACCACAAGCTCCGGTGCA 61.873 61.111 28.68 0.00 33.72 4.57
937 938 3.357079 CCACAAGCTCCGGTGCAC 61.357 66.667 28.68 8.80 33.72 4.57
938 939 3.357079 CACAAGCTCCGGTGCACC 61.357 66.667 28.68 26.78 34.99 5.01
939 940 3.872603 ACAAGCTCCGGTGCACCA 61.873 61.111 34.16 16.11 35.14 4.17
940 941 3.052082 CAAGCTCCGGTGCACCAG 61.052 66.667 34.16 25.24 35.14 4.00
941 942 3.241530 AAGCTCCGGTGCACCAGA 61.242 61.111 34.16 27.41 35.14 3.86
942 943 2.596851 AAGCTCCGGTGCACCAGAT 61.597 57.895 34.16 21.47 35.14 2.90
943 944 1.264749 AAGCTCCGGTGCACCAGATA 61.265 55.000 34.16 15.43 35.14 1.98
944 945 1.050988 AGCTCCGGTGCACCAGATAT 61.051 55.000 34.16 17.14 35.14 1.63
945 946 0.179045 GCTCCGGTGCACCAGATATT 60.179 55.000 34.16 0.00 35.14 1.28
946 947 1.747206 GCTCCGGTGCACCAGATATTT 60.747 52.381 34.16 0.00 35.14 1.40
947 948 2.643551 CTCCGGTGCACCAGATATTTT 58.356 47.619 34.16 0.00 35.14 1.82
948 949 2.614057 CTCCGGTGCACCAGATATTTTC 59.386 50.000 34.16 4.51 35.14 2.29
949 950 1.676006 CCGGTGCACCAGATATTTTCC 59.324 52.381 34.16 3.99 35.14 3.13
950 951 1.676006 CGGTGCACCAGATATTTTCCC 59.324 52.381 34.16 3.77 35.14 3.97
951 952 1.676006 GGTGCACCAGATATTTTCCCG 59.324 52.381 31.23 0.00 35.64 5.14
952 953 2.639065 GTGCACCAGATATTTTCCCGA 58.361 47.619 5.22 0.00 0.00 5.14
953 954 2.614057 GTGCACCAGATATTTTCCCGAG 59.386 50.000 5.22 0.00 0.00 4.63
954 955 1.604278 GCACCAGATATTTTCCCGAGC 59.396 52.381 0.00 0.00 0.00 5.03
955 956 2.746472 GCACCAGATATTTTCCCGAGCT 60.746 50.000 0.00 0.00 0.00 4.09
956 957 3.545703 CACCAGATATTTTCCCGAGCTT 58.454 45.455 0.00 0.00 0.00 3.74
957 958 3.947834 CACCAGATATTTTCCCGAGCTTT 59.052 43.478 0.00 0.00 0.00 3.51
958 959 4.035675 CACCAGATATTTTCCCGAGCTTTC 59.964 45.833 0.00 0.00 0.00 2.62
959 960 4.199310 CCAGATATTTTCCCGAGCTTTCA 58.801 43.478 0.00 0.00 0.00 2.69
960 961 4.274459 CCAGATATTTTCCCGAGCTTTCAG 59.726 45.833 0.00 0.00 0.00 3.02
961 962 4.274459 CAGATATTTTCCCGAGCTTTCAGG 59.726 45.833 0.00 0.00 0.00 3.86
962 963 2.879103 ATTTTCCCGAGCTTTCAGGA 57.121 45.000 0.00 0.00 0.00 3.86
963 964 2.879103 TTTTCCCGAGCTTTCAGGAT 57.121 45.000 0.00 0.00 0.00 3.24
964 965 2.113860 TTTCCCGAGCTTTCAGGATG 57.886 50.000 0.00 0.00 37.54 3.51
965 966 0.984230 TTCCCGAGCTTTCAGGATGT 59.016 50.000 0.00 0.00 37.40 3.06
966 967 0.984230 TCCCGAGCTTTCAGGATGTT 59.016 50.000 0.00 0.00 37.40 2.71
1017 1018 2.102357 GGCTCGACTCGATTCGCA 59.898 61.111 19.17 8.35 38.95 5.10
1027 1028 1.006825 TCGATTCGCAACACTCGGTG 61.007 55.000 0.00 2.92 39.75 4.94
1185 1762 2.754375 CAACCAGGTAACGCCCCT 59.246 61.111 0.00 0.00 46.39 4.79
1211 1795 2.024941 GTCCCCAATCCATCCAAAGTCT 60.025 50.000 0.00 0.00 0.00 3.24
1228 1812 5.489792 AAGTCTAGAGCACAAATCCTTCA 57.510 39.130 0.00 0.00 0.00 3.02
1235 1819 3.944015 GAGCACAAATCCTTCACTGCTAT 59.056 43.478 0.00 0.00 35.14 2.97
1254 1838 1.817357 TCATGCCTTTGCTCTGACTG 58.183 50.000 0.00 0.00 38.71 3.51
1260 1844 2.621338 CCTTTGCTCTGACTGCGATAA 58.379 47.619 0.00 0.00 0.00 1.75
1442 2026 0.039618 ATGGTACCAGGTTGGCCTTG 59.960 55.000 21.41 0.00 44.18 3.61
1524 2111 3.146847 GGACGTTCCTTCCTTGATTTGT 58.853 45.455 0.00 0.00 32.53 2.83
1525 2112 3.568430 GGACGTTCCTTCCTTGATTTGTT 59.432 43.478 0.00 0.00 32.53 2.83
1526 2113 4.320275 GGACGTTCCTTCCTTGATTTGTTC 60.320 45.833 0.00 0.00 32.53 3.18
1527 2114 4.204012 ACGTTCCTTCCTTGATTTGTTCA 58.796 39.130 0.00 0.00 0.00 3.18
1528 2115 4.036380 ACGTTCCTTCCTTGATTTGTTCAC 59.964 41.667 0.00 0.00 32.84 3.18
1529 2116 4.036262 CGTTCCTTCCTTGATTTGTTCACA 59.964 41.667 0.00 0.00 32.84 3.58
1530 2117 5.278463 CGTTCCTTCCTTGATTTGTTCACAT 60.278 40.000 0.00 0.00 32.84 3.21
1531 2118 6.515832 GTTCCTTCCTTGATTTGTTCACATT 58.484 36.000 0.00 0.00 32.84 2.71
1532 2119 6.729690 TCCTTCCTTGATTTGTTCACATTT 57.270 33.333 0.00 0.00 32.84 2.32
1533 2120 6.514947 TCCTTCCTTGATTTGTTCACATTTG 58.485 36.000 0.00 0.00 32.84 2.32
1569 2156 1.804326 CAGCGCTGCTTGAATTGCC 60.804 57.895 26.68 0.00 36.40 4.52
1644 2231 3.489355 AGTGGACTGTTTGCATCATCAA 58.511 40.909 0.00 0.00 0.00 2.57
1709 2296 2.756207 AGCGGGTGTTAAAAAGTGTTGT 59.244 40.909 0.00 0.00 0.00 3.32
1713 2300 4.095185 CGGGTGTTAAAAAGTGTTGTCAGA 59.905 41.667 0.00 0.00 0.00 3.27
1829 2416 9.436957 CAGTACAAAATGAACTAGTATCAAGGT 57.563 33.333 0.00 3.55 0.00 3.50
2044 2631 5.546526 TGCATCCCAACAAAGAAAAATACC 58.453 37.500 0.00 0.00 0.00 2.73
2466 3062 1.133513 TGGTGAAGAGGTTTGGTGCAT 60.134 47.619 0.00 0.00 0.00 3.96
2500 3100 9.214957 TGTTTCACGAGTCTGAAATATAAATGT 57.785 29.630 15.93 0.00 41.17 2.71
2521 3121 6.088016 TGTTGACATGAGGAAGGAAAATTG 57.912 37.500 0.00 0.00 0.00 2.32
2553 3153 3.001026 CAGTTGCTCAGCTATGTGAATCG 59.999 47.826 0.00 0.00 0.00 3.34
2634 3252 3.228453 CCATTTGCTAGGCATCTCCAAT 58.772 45.455 0.00 0.00 38.76 3.16
2641 3259 0.333993 AGGCATCTCCAATGGCAACT 59.666 50.000 13.17 0.00 45.66 3.16
2661 3279 6.662616 CAACTCATAAATTTAGGGCATCTCG 58.337 40.000 9.79 0.00 0.00 4.04
2664 3282 6.483640 ACTCATAAATTTAGGGCATCTCGAAC 59.516 38.462 9.79 0.00 0.00 3.95
2667 3285 0.461339 TTTAGGGCATCTCGAACGGC 60.461 55.000 0.00 0.00 0.00 5.68
2698 3316 1.541310 TTTCTCCCGCATCCGTGTCT 61.541 55.000 0.00 0.00 0.00 3.41
2737 4281 1.303236 CATCTCCAACGGCAACCCA 60.303 57.895 0.00 0.00 0.00 4.51
2768 4312 2.387445 CGCATCCGTCCGCAGAAAA 61.387 57.895 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.611284 CATCGATCTTTTGTTAAAAGTTCATCA 57.389 29.630 17.99 7.67 46.18 3.07
26 27 9.825972 TCATCGATCTTTTGTTAAAAGTTCATC 57.174 29.630 17.99 11.72 46.18 2.92
28 29 9.445786 GTTCATCGATCTTTTGTTAAAAGTTCA 57.554 29.630 17.99 10.19 46.18 3.18
29 30 8.902735 GGTTCATCGATCTTTTGTTAAAAGTTC 58.097 33.333 12.25 12.13 46.18 3.01
30 31 8.630037 AGGTTCATCGATCTTTTGTTAAAAGTT 58.370 29.630 12.25 5.83 46.18 2.66
31 32 8.166422 AGGTTCATCGATCTTTTGTTAAAAGT 57.834 30.769 12.25 2.67 46.18 2.66
33 34 9.810545 AAAAGGTTCATCGATCTTTTGTTAAAA 57.189 25.926 17.13 0.00 37.83 1.52
34 35 9.810545 AAAAAGGTTCATCGATCTTTTGTTAAA 57.189 25.926 18.07 0.00 38.80 1.52
76 77 4.522722 ACAAGTTCACCCGTTTGAAAAA 57.477 36.364 0.00 0.00 37.24 1.94
77 78 4.522722 AACAAGTTCACCCGTTTGAAAA 57.477 36.364 0.00 0.00 37.24 2.29
78 79 4.218852 AGAAACAAGTTCACCCGTTTGAAA 59.781 37.500 0.00 0.00 37.24 2.69
79 80 3.759618 AGAAACAAGTTCACCCGTTTGAA 59.240 39.130 0.00 0.00 38.86 2.69
80 81 3.349022 AGAAACAAGTTCACCCGTTTGA 58.651 40.909 0.00 0.00 38.86 2.69
81 82 3.775661 AGAAACAAGTTCACCCGTTTG 57.224 42.857 0.00 0.00 38.86 2.93
82 83 4.794278 AAAGAAACAAGTTCACCCGTTT 57.206 36.364 0.00 0.00 38.86 3.60
83 84 5.900865 TTAAAGAAACAAGTTCACCCGTT 57.099 34.783 0.00 0.00 38.86 4.44
84 85 5.900865 TTTAAAGAAACAAGTTCACCCGT 57.099 34.783 0.00 0.00 38.86 5.28
85 86 6.735130 AGATTTAAAGAAACAAGTTCACCCG 58.265 36.000 0.00 0.00 38.86 5.28
86 87 8.942338 AAAGATTTAAAGAAACAAGTTCACCC 57.058 30.769 0.00 0.00 38.86 4.61
172 173 2.373540 TTTGTCGTTGATCCGGTAGG 57.626 50.000 0.00 0.00 39.46 3.18
173 174 3.991773 TCTTTTTGTCGTTGATCCGGTAG 59.008 43.478 0.00 0.00 0.00 3.18
174 175 3.742369 GTCTTTTTGTCGTTGATCCGGTA 59.258 43.478 0.00 0.00 0.00 4.02
175 176 2.546789 GTCTTTTTGTCGTTGATCCGGT 59.453 45.455 0.00 0.00 0.00 5.28
176 177 2.411031 CGTCTTTTTGTCGTTGATCCGG 60.411 50.000 0.00 0.00 0.00 5.14
177 178 2.411031 CCGTCTTTTTGTCGTTGATCCG 60.411 50.000 0.00 0.00 0.00 4.18
178 179 2.803956 TCCGTCTTTTTGTCGTTGATCC 59.196 45.455 0.00 0.00 0.00 3.36
179 180 4.461992 TTCCGTCTTTTTGTCGTTGATC 57.538 40.909 0.00 0.00 0.00 2.92
180 181 4.886247 TTTCCGTCTTTTTGTCGTTGAT 57.114 36.364 0.00 0.00 0.00 2.57
181 182 4.681835 TTTTCCGTCTTTTTGTCGTTGA 57.318 36.364 0.00 0.00 0.00 3.18
202 203 1.537202 CTCGCTTGCTGCCTAGTTTTT 59.463 47.619 0.00 0.00 38.78 1.94
203 204 1.160137 CTCGCTTGCTGCCTAGTTTT 58.840 50.000 0.00 0.00 38.78 2.43
204 205 1.301677 GCTCGCTTGCTGCCTAGTTT 61.302 55.000 0.00 0.00 38.78 2.66
205 206 1.743252 GCTCGCTTGCTGCCTAGTT 60.743 57.895 0.00 0.00 38.78 2.24
206 207 2.125350 GCTCGCTTGCTGCCTAGT 60.125 61.111 0.00 0.00 38.78 2.57
207 208 3.260483 CGCTCGCTTGCTGCCTAG 61.260 66.667 0.00 0.00 38.78 3.02
208 209 3.758931 TCGCTCGCTTGCTGCCTA 61.759 61.111 0.00 0.00 38.78 3.93
213 214 4.135153 ATCGGTCGCTCGCTTGCT 62.135 61.111 0.00 0.00 0.00 3.91
214 215 3.621394 GATCGGTCGCTCGCTTGC 61.621 66.667 0.00 0.00 0.00 4.01
215 216 2.956964 GGATCGGTCGCTCGCTTG 60.957 66.667 0.00 0.00 0.00 4.01
216 217 4.554363 CGGATCGGTCGCTCGCTT 62.554 66.667 0.00 0.00 0.00 4.68
234 235 2.152112 GTGATTTCGATCGCTCGCTTAG 59.848 50.000 11.09 0.00 44.65 2.18
235 236 2.117137 GTGATTTCGATCGCTCGCTTA 58.883 47.619 11.09 0.00 44.65 3.09
236 237 0.924090 GTGATTTCGATCGCTCGCTT 59.076 50.000 11.09 0.00 44.65 4.68
237 238 0.872021 GGTGATTTCGATCGCTCGCT 60.872 55.000 11.09 0.00 44.65 4.93
238 239 1.145759 TGGTGATTTCGATCGCTCGC 61.146 55.000 11.09 12.81 44.65 5.03
239 240 1.491670 ATGGTGATTTCGATCGCTCG 58.508 50.000 11.09 1.45 46.41 5.03
240 241 5.006746 AGTTTTATGGTGATTTCGATCGCTC 59.993 40.000 11.09 7.67 0.00 5.03
241 242 4.876107 AGTTTTATGGTGATTTCGATCGCT 59.124 37.500 11.09 0.00 0.00 4.93
242 243 5.156804 AGTTTTATGGTGATTTCGATCGC 57.843 39.130 11.09 0.00 0.00 4.58
243 244 5.423717 CGAGTTTTATGGTGATTTCGATCG 58.576 41.667 9.36 9.36 0.00 3.69
244 245 5.293569 ACCGAGTTTTATGGTGATTTCGATC 59.706 40.000 0.00 0.00 33.91 3.69
245 246 5.183228 ACCGAGTTTTATGGTGATTTCGAT 58.817 37.500 0.00 0.00 33.91 3.59
246 247 4.571919 ACCGAGTTTTATGGTGATTTCGA 58.428 39.130 0.00 0.00 33.91 3.71
247 248 4.939509 ACCGAGTTTTATGGTGATTTCG 57.060 40.909 0.00 0.00 33.91 3.46
248 249 7.248437 CCTAAACCGAGTTTTATGGTGATTTC 58.752 38.462 7.22 0.00 37.01 2.17
249 250 6.152154 CCCTAAACCGAGTTTTATGGTGATTT 59.848 38.462 7.22 0.00 37.01 2.17
250 251 5.650703 CCCTAAACCGAGTTTTATGGTGATT 59.349 40.000 7.22 0.00 37.01 2.57
251 252 5.045432 TCCCTAAACCGAGTTTTATGGTGAT 60.045 40.000 7.22 0.00 37.01 3.06
252 253 4.286549 TCCCTAAACCGAGTTTTATGGTGA 59.713 41.667 7.22 5.72 37.01 4.02
253 254 4.581868 TCCCTAAACCGAGTTTTATGGTG 58.418 43.478 7.22 4.18 37.01 4.17
254 255 4.914177 TCCCTAAACCGAGTTTTATGGT 57.086 40.909 7.22 0.00 37.01 3.55
255 256 5.556355 GTTCCCTAAACCGAGTTTTATGG 57.444 43.478 7.22 7.63 37.01 2.74
267 268 7.199541 GAACTTTCTACAAGGTTCCCTAAAC 57.800 40.000 0.00 0.00 40.90 2.01
274 275 7.519488 CGGTTTTAGGAACTTTCTACAAGGTTC 60.519 40.741 0.00 0.00 44.25 3.62
275 276 6.261603 CGGTTTTAGGAACTTTCTACAAGGTT 59.738 38.462 0.00 0.00 41.75 3.50
276 277 5.761726 CGGTTTTAGGAACTTTCTACAAGGT 59.238 40.000 0.00 0.00 41.75 3.50
277 278 5.180680 CCGGTTTTAGGAACTTTCTACAAGG 59.819 44.000 0.00 0.00 41.75 3.61
278 279 5.761726 ACCGGTTTTAGGAACTTTCTACAAG 59.238 40.000 0.00 0.00 41.75 3.16
279 280 5.683681 ACCGGTTTTAGGAACTTTCTACAA 58.316 37.500 0.00 0.00 41.75 2.41
280 281 5.294734 ACCGGTTTTAGGAACTTTCTACA 57.705 39.130 0.00 0.00 41.75 2.74
281 282 5.049198 CCAACCGGTTTTAGGAACTTTCTAC 60.049 44.000 19.55 0.00 41.75 2.59
282 283 5.065235 CCAACCGGTTTTAGGAACTTTCTA 58.935 41.667 19.55 0.00 41.75 2.10
283 284 3.887110 CCAACCGGTTTTAGGAACTTTCT 59.113 43.478 19.55 0.00 41.75 2.52
284 285 3.551454 GCCAACCGGTTTTAGGAACTTTC 60.551 47.826 22.85 3.51 35.13 2.62
285 286 2.363038 GCCAACCGGTTTTAGGAACTTT 59.637 45.455 22.85 0.00 35.13 2.66
286 287 1.958579 GCCAACCGGTTTTAGGAACTT 59.041 47.619 22.85 0.00 35.13 2.66
287 288 1.612676 GCCAACCGGTTTTAGGAACT 58.387 50.000 22.85 0.00 37.19 3.01
288 289 0.599558 GGCCAACCGGTTTTAGGAAC 59.400 55.000 22.85 12.32 33.28 3.62
289 290 3.039452 GGCCAACCGGTTTTAGGAA 57.961 52.632 22.85 0.00 33.28 3.36
290 291 4.826248 GGCCAACCGGTTTTAGGA 57.174 55.556 22.85 0.00 33.28 2.94
300 301 1.455248 TTACATAAGTGCGGCCAACC 58.545 50.000 2.24 0.00 0.00 3.77
301 302 3.377172 AGATTTACATAAGTGCGGCCAAC 59.623 43.478 2.24 0.00 0.00 3.77
302 303 3.616219 AGATTTACATAAGTGCGGCCAA 58.384 40.909 2.24 0.00 0.00 4.52
303 304 3.275617 AGATTTACATAAGTGCGGCCA 57.724 42.857 2.24 0.00 0.00 5.36
304 305 3.625764 TCAAGATTTACATAAGTGCGGCC 59.374 43.478 0.00 0.00 0.00 6.13
305 306 4.875544 TCAAGATTTACATAAGTGCGGC 57.124 40.909 0.00 0.00 0.00 6.53
306 307 6.250819 CACTTCAAGATTTACATAAGTGCGG 58.749 40.000 0.00 0.00 37.91 5.69
307 308 6.250819 CCACTTCAAGATTTACATAAGTGCG 58.749 40.000 0.00 0.00 41.41 5.34
308 309 6.555315 CCCACTTCAAGATTTACATAAGTGC 58.445 40.000 0.00 0.00 41.41 4.40
309 310 6.404734 GGCCCACTTCAAGATTTACATAAGTG 60.405 42.308 0.00 0.00 42.05 3.16
310 311 5.652452 GGCCCACTTCAAGATTTACATAAGT 59.348 40.000 0.00 0.00 0.00 2.24
311 312 5.220854 CGGCCCACTTCAAGATTTACATAAG 60.221 44.000 0.00 0.00 0.00 1.73
312 313 4.638421 CGGCCCACTTCAAGATTTACATAA 59.362 41.667 0.00 0.00 0.00 1.90
313 314 4.196193 CGGCCCACTTCAAGATTTACATA 58.804 43.478 0.00 0.00 0.00 2.29
314 315 3.016736 CGGCCCACTTCAAGATTTACAT 58.983 45.455 0.00 0.00 0.00 2.29
315 316 2.432444 CGGCCCACTTCAAGATTTACA 58.568 47.619 0.00 0.00 0.00 2.41
316 317 1.743394 CCGGCCCACTTCAAGATTTAC 59.257 52.381 0.00 0.00 0.00 2.01
317 318 1.953311 GCCGGCCCACTTCAAGATTTA 60.953 52.381 18.11 0.00 0.00 1.40
318 319 1.250840 GCCGGCCCACTTCAAGATTT 61.251 55.000 18.11 0.00 0.00 2.17
319 320 1.678970 GCCGGCCCACTTCAAGATT 60.679 57.895 18.11 0.00 0.00 2.40
320 321 2.044946 GCCGGCCCACTTCAAGAT 60.045 61.111 18.11 0.00 0.00 2.40
321 322 4.344865 GGCCGGCCCACTTCAAGA 62.345 66.667 36.64 0.00 0.00 3.02
331 332 3.758931 GACAAACATGGGCCGGCC 61.759 66.667 38.57 38.57 0.00 6.13
332 333 4.114997 CGACAAACATGGGCCGGC 62.115 66.667 21.18 21.18 0.00 6.13
333 334 4.114997 GCGACAAACATGGGCCGG 62.115 66.667 0.00 0.00 0.00 6.13
334 335 3.039202 GAGCGACAAACATGGGCCG 62.039 63.158 0.00 0.00 0.00 6.13
335 336 2.877691 GAGCGACAAACATGGGCC 59.122 61.111 0.00 0.00 0.00 5.80
336 337 2.480555 CGAGCGACAAACATGGGC 59.519 61.111 0.00 0.00 0.00 5.36
337 338 1.647545 ATGCGAGCGACAAACATGGG 61.648 55.000 0.00 0.00 0.00 4.00
338 339 0.247814 GATGCGAGCGACAAACATGG 60.248 55.000 0.00 0.00 0.00 3.66
339 340 0.584785 CGATGCGAGCGACAAACATG 60.585 55.000 0.00 0.00 0.00 3.21
340 341 1.709760 CGATGCGAGCGACAAACAT 59.290 52.632 0.00 0.00 0.00 2.71
341 342 3.010585 GCGATGCGAGCGACAAACA 62.011 57.895 0.00 0.00 0.00 2.83
342 343 2.276058 GCGATGCGAGCGACAAAC 60.276 61.111 0.00 0.00 0.00 2.93
343 344 2.432456 AGCGATGCGAGCGACAAA 60.432 55.556 0.00 0.00 40.04 2.83
344 345 3.181290 CAGCGATGCGAGCGACAA 61.181 61.111 0.00 0.00 40.04 3.18
347 348 4.801624 AAGCAGCGATGCGAGCGA 62.802 61.111 21.29 0.00 38.88 4.93
348 349 3.857854 AAAGCAGCGATGCGAGCG 61.858 61.111 21.29 0.00 38.88 5.03
349 350 2.277120 CAAAGCAGCGATGCGAGC 60.277 61.111 21.29 0.00 40.27 5.03
350 351 1.225936 CACAAAGCAGCGATGCGAG 60.226 57.895 21.29 16.07 40.27 5.03
351 352 2.862436 CACAAAGCAGCGATGCGA 59.138 55.556 21.29 0.00 40.27 5.10
352 353 2.872925 GCACAAAGCAGCGATGCG 60.873 61.111 21.29 8.87 44.79 4.73
358 359 2.176792 GCTACCGCACAAAGCAGC 59.823 61.111 0.00 0.00 46.13 5.25
359 360 2.690778 GGGCTACCGCACAAAGCAG 61.691 63.158 0.00 0.00 46.13 4.24
360 361 2.671619 GGGCTACCGCACAAAGCA 60.672 61.111 0.00 0.00 46.13 3.91
370 371 1.880894 GGCAAACTTTCGGGCTACC 59.119 57.895 0.00 0.00 0.00 3.18
371 372 1.500396 CGGCAAACTTTCGGGCTAC 59.500 57.895 0.00 0.00 0.00 3.58
372 373 2.329614 GCGGCAAACTTTCGGGCTA 61.330 57.895 0.00 0.00 0.00 3.93
373 374 3.670377 GCGGCAAACTTTCGGGCT 61.670 61.111 0.00 0.00 0.00 5.19
374 375 3.896863 CTGCGGCAAACTTTCGGGC 62.897 63.158 3.44 0.00 0.00 6.13
375 376 2.255252 CTGCGGCAAACTTTCGGG 59.745 61.111 3.44 0.00 0.00 5.14
376 377 2.429069 GCTGCGGCAAACTTTCGG 60.429 61.111 14.08 0.00 38.54 4.30
377 378 2.331098 TGCTGCGGCAAACTTTCG 59.669 55.556 20.23 0.00 46.36 3.46
389 390 1.718757 CCCTATTCGCCACTTGCTGC 61.719 60.000 0.00 0.00 38.05 5.25
390 391 0.107703 TCCCTATTCGCCACTTGCTG 60.108 55.000 0.00 0.00 38.05 4.41
391 392 0.839946 ATCCCTATTCGCCACTTGCT 59.160 50.000 0.00 0.00 38.05 3.91
392 393 1.680338 AATCCCTATTCGCCACTTGC 58.320 50.000 0.00 0.00 0.00 4.01
393 394 2.618709 GGAAATCCCTATTCGCCACTTG 59.381 50.000 0.00 0.00 0.00 3.16
394 395 2.509964 AGGAAATCCCTATTCGCCACTT 59.490 45.455 0.00 0.00 45.48 3.16
395 396 2.127708 AGGAAATCCCTATTCGCCACT 58.872 47.619 0.00 0.00 45.48 4.00
396 397 2.640316 AGGAAATCCCTATTCGCCAC 57.360 50.000 0.00 0.00 45.48 5.01
424 425 2.815211 TTCGATCGCACTGCTGGC 60.815 61.111 11.09 0.00 0.00 4.85
425 426 1.416813 GAGTTCGATCGCACTGCTGG 61.417 60.000 24.87 0.00 0.00 4.85
426 427 0.733909 TGAGTTCGATCGCACTGCTG 60.734 55.000 24.87 0.00 0.00 4.41
427 428 0.457509 CTGAGTTCGATCGCACTGCT 60.458 55.000 24.87 10.31 0.00 4.24
428 429 1.994467 CTGAGTTCGATCGCACTGC 59.006 57.895 24.87 15.67 0.00 4.40
429 430 1.737196 CGCTGAGTTCGATCGCACTG 61.737 60.000 24.87 12.45 0.00 3.66
430 431 1.515088 CGCTGAGTTCGATCGCACT 60.515 57.895 20.33 20.33 0.00 4.40
431 432 2.990735 CGCTGAGTTCGATCGCAC 59.009 61.111 11.09 10.52 0.00 5.34
432 433 2.880879 GCGCTGAGTTCGATCGCA 60.881 61.111 11.09 0.00 44.50 5.10
433 434 2.572448 GAGCGCTGAGTTCGATCGC 61.572 63.158 18.48 0.00 45.34 4.58
434 435 3.594762 GAGCGCTGAGTTCGATCG 58.405 61.111 18.48 9.36 32.71 3.69
439 440 2.811317 CCCACGAGCGCTGAGTTC 60.811 66.667 18.48 0.00 0.00 3.01
458 459 4.720902 TGTCACTGGCATGGGCGG 62.721 66.667 0.00 0.00 42.47 6.13
459 460 3.129502 CTGTCACTGGCATGGGCG 61.130 66.667 0.00 0.00 42.47 6.13
460 461 2.034687 ACTGTCACTGGCATGGGC 59.965 61.111 0.00 0.00 40.13 5.36
461 462 2.338015 GCACTGTCACTGGCATGGG 61.338 63.158 0.00 0.00 0.00 4.00
462 463 2.683859 CGCACTGTCACTGGCATGG 61.684 63.158 0.00 0.00 0.00 3.66
463 464 1.632948 CTCGCACTGTCACTGGCATG 61.633 60.000 0.00 0.00 0.00 4.06
464 465 1.375140 CTCGCACTGTCACTGGCAT 60.375 57.895 0.00 0.00 0.00 4.40
465 466 2.029518 CTCGCACTGTCACTGGCA 59.970 61.111 0.00 0.00 0.00 4.92
466 467 3.418068 GCTCGCACTGTCACTGGC 61.418 66.667 0.00 0.00 0.00 4.85
467 468 3.108289 CGCTCGCACTGTCACTGG 61.108 66.667 0.00 0.00 0.00 4.00
468 469 3.771491 GCGCTCGCACTGTCACTG 61.771 66.667 9.59 0.00 41.49 3.66
477 478 2.997952 TTAACAACCTGGCGCTCGCA 62.998 55.000 16.36 0.00 44.11 5.10
478 479 2.322081 TTAACAACCTGGCGCTCGC 61.322 57.895 7.64 5.60 41.06 5.03
479 480 1.495951 GTTAACAACCTGGCGCTCG 59.504 57.895 7.64 0.00 0.00 5.03
480 481 1.495951 CGTTAACAACCTGGCGCTC 59.504 57.895 7.64 0.00 0.00 5.03
481 482 1.964373 CCGTTAACAACCTGGCGCT 60.964 57.895 7.64 0.00 0.00 5.92
482 483 2.559330 CCGTTAACAACCTGGCGC 59.441 61.111 6.39 0.00 0.00 6.53
483 484 2.973316 GCCCGTTAACAACCTGGCG 61.973 63.158 6.39 0.00 36.49 5.69
484 485 2.959372 GCCCGTTAACAACCTGGC 59.041 61.111 6.39 5.50 38.25 4.85
485 486 2.973316 GCGCCCGTTAACAACCTGG 61.973 63.158 6.39 0.00 0.00 4.45
486 487 2.559330 GCGCCCGTTAACAACCTG 59.441 61.111 6.39 0.00 0.00 4.00
487 488 2.670592 GGCGCCCGTTAACAACCT 60.671 61.111 18.11 0.00 0.00 3.50
488 489 2.670592 AGGCGCCCGTTAACAACC 60.671 61.111 26.15 0.00 0.00 3.77
489 490 2.559330 CAGGCGCCCGTTAACAAC 59.441 61.111 26.15 0.00 0.00 3.32
490 491 3.358707 GCAGGCGCCCGTTAACAA 61.359 61.111 26.15 0.00 0.00 2.83
491 492 4.627801 TGCAGGCGCCCGTTAACA 62.628 61.111 26.15 9.79 37.32 2.41
492 493 3.358707 TTGCAGGCGCCCGTTAAC 61.359 61.111 26.15 6.93 37.32 2.01
493 494 3.358707 GTTGCAGGCGCCCGTTAA 61.359 61.111 26.15 11.03 37.32 2.01
503 504 2.821366 CCTAGCCAGCGTTGCAGG 60.821 66.667 0.00 0.00 38.28 4.85
504 505 1.812922 CTCCTAGCCAGCGTTGCAG 60.813 63.158 0.00 0.00 0.00 4.41
505 506 2.265739 CTCCTAGCCAGCGTTGCA 59.734 61.111 0.00 0.00 0.00 4.08
506 507 3.198489 GCTCCTAGCCAGCGTTGC 61.198 66.667 0.00 0.00 34.48 4.17
507 508 1.078848 AAGCTCCTAGCCAGCGTTG 60.079 57.895 6.33 0.00 43.77 4.10
508 509 1.219393 GAAGCTCCTAGCCAGCGTT 59.781 57.895 6.33 2.70 43.77 4.84
509 510 2.726351 GGAAGCTCCTAGCCAGCGT 61.726 63.158 6.33 3.70 43.77 5.07
510 511 2.107953 GGAAGCTCCTAGCCAGCG 59.892 66.667 6.33 0.00 43.77 5.18
511 512 2.107953 CGGAAGCTCCTAGCCAGC 59.892 66.667 4.14 4.14 43.77 4.85
512 513 2.801631 CCCGGAAGCTCCTAGCCAG 61.802 68.421 0.73 0.00 43.77 4.85
513 514 2.764128 CCCGGAAGCTCCTAGCCA 60.764 66.667 0.73 0.00 43.77 4.75
514 515 3.551407 CCCCGGAAGCTCCTAGCC 61.551 72.222 0.73 0.00 43.77 3.93
515 516 3.551407 CCCCCGGAAGCTCCTAGC 61.551 72.222 0.73 0.00 42.84 3.42
516 517 0.764752 ATTCCCCCGGAAGCTCCTAG 60.765 60.000 0.73 0.00 45.48 3.02
517 518 1.054406 CATTCCCCCGGAAGCTCCTA 61.054 60.000 0.73 0.00 45.48 2.94
518 519 2.042930 ATTCCCCCGGAAGCTCCT 59.957 61.111 0.73 0.00 45.48 3.69
519 520 1.342672 TACATTCCCCCGGAAGCTCC 61.343 60.000 0.73 0.00 45.48 4.70
520 521 0.765510 ATACATTCCCCCGGAAGCTC 59.234 55.000 0.73 0.00 45.48 4.09
521 522 0.474184 CATACATTCCCCCGGAAGCT 59.526 55.000 0.73 0.00 45.48 3.74
522 523 0.182775 ACATACATTCCCCCGGAAGC 59.817 55.000 0.73 0.00 45.48 3.86
523 524 2.704065 ACTACATACATTCCCCCGGAAG 59.296 50.000 0.73 0.00 45.48 3.46
524 525 2.436542 CACTACATACATTCCCCCGGAA 59.563 50.000 0.73 0.00 46.39 4.30
525 526 2.043992 CACTACATACATTCCCCCGGA 58.956 52.381 0.73 0.00 0.00 5.14
526 527 1.542547 GCACTACATACATTCCCCCGG 60.543 57.143 0.00 0.00 0.00 5.73
527 528 1.140052 TGCACTACATACATTCCCCCG 59.860 52.381 0.00 0.00 0.00 5.73
528 529 2.172717 AGTGCACTACATACATTCCCCC 59.827 50.000 20.16 0.00 0.00 5.40
529 530 3.467803 GAGTGCACTACATACATTCCCC 58.532 50.000 21.73 0.00 0.00 4.81
530 531 3.123804 CGAGTGCACTACATACATTCCC 58.876 50.000 21.73 1.17 0.00 3.97
531 532 2.540101 GCGAGTGCACTACATACATTCC 59.460 50.000 21.73 1.75 42.15 3.01
532 533 3.843426 GCGAGTGCACTACATACATTC 57.157 47.619 21.73 2.87 42.15 2.67
545 546 2.633657 CACCACAAGTGCGAGTGC 59.366 61.111 0.00 0.00 40.28 4.40
553 554 0.816421 GCACCGGTAACACCACAAGT 60.816 55.000 6.87 0.00 38.47 3.16
554 555 0.816018 TGCACCGGTAACACCACAAG 60.816 55.000 6.87 0.00 38.47 3.16
555 556 0.179015 ATGCACCGGTAACACCACAA 60.179 50.000 6.87 0.00 38.47 3.33
556 557 0.604243 GATGCACCGGTAACACCACA 60.604 55.000 6.87 0.00 38.47 4.17
557 558 1.632046 CGATGCACCGGTAACACCAC 61.632 60.000 6.87 3.83 38.47 4.16
558 559 1.374885 CGATGCACCGGTAACACCA 60.375 57.895 6.87 0.00 38.47 4.17
559 560 2.104253 CCGATGCACCGGTAACACC 61.104 63.158 12.80 0.00 44.23 4.16
560 561 3.481661 CCGATGCACCGGTAACAC 58.518 61.111 12.80 3.27 44.23 3.32
567 568 5.122239 ACATTTTATGATATCCGATGCACCG 59.878 40.000 0.00 0.00 0.00 4.94
568 569 6.500684 ACATTTTATGATATCCGATGCACC 57.499 37.500 0.00 0.00 0.00 5.01
569 570 8.801715 AAAACATTTTATGATATCCGATGCAC 57.198 30.769 0.00 0.00 0.00 4.57
609 610 2.546368 TGCGTCAACGTGCTAGATTTTT 59.454 40.909 4.29 0.00 42.22 1.94
610 611 2.139917 TGCGTCAACGTGCTAGATTTT 58.860 42.857 4.29 0.00 42.22 1.82
611 612 1.790755 TGCGTCAACGTGCTAGATTT 58.209 45.000 4.29 0.00 42.22 2.17
612 613 1.459592 GTTGCGTCAACGTGCTAGATT 59.540 47.619 4.29 0.00 42.22 2.40
613 614 1.068474 GTTGCGTCAACGTGCTAGAT 58.932 50.000 4.29 0.00 42.22 1.98
614 615 0.249114 TGTTGCGTCAACGTGCTAGA 60.249 50.000 14.86 0.00 46.13 2.43
615 616 0.790207 ATGTTGCGTCAACGTGCTAG 59.210 50.000 14.03 0.00 46.13 3.42
616 617 0.787787 GATGTTGCGTCAACGTGCTA 59.212 50.000 18.01 3.20 46.13 3.49
617 618 1.157257 TGATGTTGCGTCAACGTGCT 61.157 50.000 18.01 5.02 46.13 4.40
618 619 0.316607 TTGATGTTGCGTCAACGTGC 60.317 50.000 18.01 11.78 46.13 5.34
619 620 1.385038 GTTGATGTTGCGTCAACGTG 58.615 50.000 18.01 0.00 45.93 4.49
620 621 3.817960 GTTGATGTTGCGTCAACGT 57.182 47.368 15.50 14.50 45.93 3.99
623 624 3.060602 TCATACGTTGATGTTGCGTCAA 58.939 40.909 0.00 0.18 39.64 3.18
624 625 2.678324 TCATACGTTGATGTTGCGTCA 58.322 42.857 0.00 0.00 39.64 4.35
625 626 3.925688 ATCATACGTTGATGTTGCGTC 57.074 42.857 10.97 0.00 43.60 5.19
633 634 7.481483 CGAAATTTTGTGACATCATACGTTGAT 59.519 33.333 0.00 0.00 46.27 2.57
634 635 6.794636 CGAAATTTTGTGACATCATACGTTGA 59.205 34.615 0.00 0.00 39.12 3.18
635 636 6.577055 ACGAAATTTTGTGACATCATACGTTG 59.423 34.615 10.38 0.00 0.00 4.10
636 637 6.664515 ACGAAATTTTGTGACATCATACGTT 58.335 32.000 10.38 0.00 0.00 3.99
637 638 6.236017 ACGAAATTTTGTGACATCATACGT 57.764 33.333 10.38 0.00 0.00 3.57
638 639 9.909043 TTATACGAAATTTTGTGACATCATACG 57.091 29.630 19.51 3.78 0.00 3.06
687 688 9.868277 ACTGAAGTCAAATTTGTCATTTTTGTA 57.132 25.926 17.47 0.00 33.24 2.41
688 689 8.658609 CACTGAAGTCAAATTTGTCATTTTTGT 58.341 29.630 17.47 5.87 33.24 2.83
689 690 8.658609 ACACTGAAGTCAAATTTGTCATTTTTG 58.341 29.630 17.47 10.97 0.00 2.44
690 691 8.658609 CACACTGAAGTCAAATTTGTCATTTTT 58.341 29.630 17.47 3.13 0.00 1.94
691 692 8.034215 TCACACTGAAGTCAAATTTGTCATTTT 58.966 29.630 17.47 3.46 0.00 1.82
692 693 7.546358 TCACACTGAAGTCAAATTTGTCATTT 58.454 30.769 17.47 8.15 0.00 2.32
693 694 7.099266 TCACACTGAAGTCAAATTTGTCATT 57.901 32.000 17.47 10.69 0.00 2.57
694 695 6.698008 TCACACTGAAGTCAAATTTGTCAT 57.302 33.333 17.47 5.49 0.00 3.06
695 696 6.698008 ATCACACTGAAGTCAAATTTGTCA 57.302 33.333 17.47 12.76 0.00 3.58
696 697 9.121517 CATTATCACACTGAAGTCAAATTTGTC 57.878 33.333 17.47 12.30 0.00 3.18
697 698 8.084073 CCATTATCACACTGAAGTCAAATTTGT 58.916 33.333 17.47 0.00 0.00 2.83
698 699 7.543172 CCCATTATCACACTGAAGTCAAATTTG 59.457 37.037 12.15 12.15 0.00 2.32
699 700 7.605449 CCCATTATCACACTGAAGTCAAATTT 58.395 34.615 0.00 0.00 0.00 1.82
700 701 6.350445 GCCCATTATCACACTGAAGTCAAATT 60.350 38.462 0.00 0.00 0.00 1.82
701 702 5.126061 GCCCATTATCACACTGAAGTCAAAT 59.874 40.000 0.00 0.00 0.00 2.32
702 703 4.458989 GCCCATTATCACACTGAAGTCAAA 59.541 41.667 0.00 0.00 0.00 2.69
703 704 4.009675 GCCCATTATCACACTGAAGTCAA 58.990 43.478 0.00 0.00 0.00 3.18
704 705 3.609853 GCCCATTATCACACTGAAGTCA 58.390 45.455 0.00 0.00 0.00 3.41
705 706 2.945668 GGCCCATTATCACACTGAAGTC 59.054 50.000 0.00 0.00 0.00 3.01
706 707 2.308570 TGGCCCATTATCACACTGAAGT 59.691 45.455 0.00 0.00 0.00 3.01
707 708 3.003394 TGGCCCATTATCACACTGAAG 57.997 47.619 0.00 0.00 0.00 3.02
708 709 3.448093 TTGGCCCATTATCACACTGAA 57.552 42.857 0.00 0.00 0.00 3.02
709 710 3.448093 TTTGGCCCATTATCACACTGA 57.552 42.857 0.00 0.00 0.00 3.41
710 711 3.956199 AGATTTGGCCCATTATCACACTG 59.044 43.478 0.00 0.00 0.00 3.66
711 712 4.255510 AGATTTGGCCCATTATCACACT 57.744 40.909 0.00 0.00 0.00 3.55
712 713 6.463995 TTTAGATTTGGCCCATTATCACAC 57.536 37.500 0.00 0.00 0.00 3.82
713 714 5.068987 GCTTTAGATTTGGCCCATTATCACA 59.931 40.000 0.00 0.00 0.00 3.58
714 715 5.509670 GGCTTTAGATTTGGCCCATTATCAC 60.510 44.000 0.00 0.00 38.77 3.06
715 716 4.588528 GGCTTTAGATTTGGCCCATTATCA 59.411 41.667 0.00 0.00 38.77 2.15
716 717 5.139435 GGCTTTAGATTTGGCCCATTATC 57.861 43.478 0.00 0.00 38.77 1.75
723 724 2.179427 ACTTGGGCTTTAGATTTGGCC 58.821 47.619 0.00 0.00 45.24 5.36
724 725 3.961480 AACTTGGGCTTTAGATTTGGC 57.039 42.857 0.00 0.00 0.00 4.52
785 786 9.810545 AGTCAAAATTCAAAACCTAATTCGAAA 57.189 25.926 0.00 0.00 0.00 3.46
786 787 9.810545 AAGTCAAAATTCAAAACCTAATTCGAA 57.189 25.926 0.00 0.00 0.00 3.71
787 788 9.810545 AAAGTCAAAATTCAAAACCTAATTCGA 57.189 25.926 0.00 0.00 0.00 3.71
821 822 9.671279 TCACACAACATCAATATAAGTTCTCAT 57.329 29.630 0.00 0.00 0.00 2.90
822 823 9.154847 CTCACACAACATCAATATAAGTTCTCA 57.845 33.333 0.00 0.00 0.00 3.27
823 824 9.155975 ACTCACACAACATCAATATAAGTTCTC 57.844 33.333 0.00 0.00 0.00 2.87
824 825 8.939929 CACTCACACAACATCAATATAAGTTCT 58.060 33.333 0.00 0.00 0.00 3.01
825 826 8.721478 ACACTCACACAACATCAATATAAGTTC 58.279 33.333 0.00 0.00 0.00 3.01
826 827 8.506437 CACACTCACACAACATCAATATAAGTT 58.494 33.333 0.00 0.00 0.00 2.66
827 828 7.361201 GCACACTCACACAACATCAATATAAGT 60.361 37.037 0.00 0.00 0.00 2.24
828 829 6.963242 GCACACTCACACAACATCAATATAAG 59.037 38.462 0.00 0.00 0.00 1.73
829 830 6.654582 AGCACACTCACACAACATCAATATAA 59.345 34.615 0.00 0.00 0.00 0.98
830 831 6.172630 AGCACACTCACACAACATCAATATA 58.827 36.000 0.00 0.00 0.00 0.86
831 832 5.005740 AGCACACTCACACAACATCAATAT 58.994 37.500 0.00 0.00 0.00 1.28
832 833 4.388485 AGCACACTCACACAACATCAATA 58.612 39.130 0.00 0.00 0.00 1.90
833 834 3.216800 AGCACACTCACACAACATCAAT 58.783 40.909 0.00 0.00 0.00 2.57
834 835 2.642427 AGCACACTCACACAACATCAA 58.358 42.857 0.00 0.00 0.00 2.57
835 836 2.330440 AGCACACTCACACAACATCA 57.670 45.000 0.00 0.00 0.00 3.07
836 837 5.362556 AATTAGCACACTCACACAACATC 57.637 39.130 0.00 0.00 0.00 3.06
837 838 5.772825 AAATTAGCACACTCACACAACAT 57.227 34.783 0.00 0.00 0.00 2.71
838 839 5.574891 AAAATTAGCACACTCACACAACA 57.425 34.783 0.00 0.00 0.00 3.33
886 887 5.356751 TGCACCGAGCTCATATTGTATTTTT 59.643 36.000 15.40 0.00 45.94 1.94
887 888 4.881273 TGCACCGAGCTCATATTGTATTTT 59.119 37.500 15.40 0.00 45.94 1.82
888 889 4.273480 GTGCACCGAGCTCATATTGTATTT 59.727 41.667 15.40 0.00 45.94 1.40
889 890 3.809832 GTGCACCGAGCTCATATTGTATT 59.190 43.478 15.40 0.00 45.94 1.89
890 891 3.393800 GTGCACCGAGCTCATATTGTAT 58.606 45.455 15.40 0.00 45.94 2.29
891 892 2.483013 GGTGCACCGAGCTCATATTGTA 60.483 50.000 22.49 1.13 45.94 2.41
892 893 1.656652 GTGCACCGAGCTCATATTGT 58.343 50.000 15.40 0.00 45.94 2.71
893 894 0.940126 GGTGCACCGAGCTCATATTG 59.060 55.000 22.49 5.56 45.94 1.90
894 895 0.833287 AGGTGCACCGAGCTCATATT 59.167 50.000 29.68 5.62 45.94 1.28
895 896 0.105593 CAGGTGCACCGAGCTCATAT 59.894 55.000 29.68 6.44 45.94 1.78
896 897 1.257750 ACAGGTGCACCGAGCTCATA 61.258 55.000 29.68 0.00 45.94 2.15
897 898 1.257750 TACAGGTGCACCGAGCTCAT 61.258 55.000 29.68 8.08 45.94 2.90
898 899 1.877576 CTACAGGTGCACCGAGCTCA 61.878 60.000 29.68 13.77 45.94 4.26
899 900 1.153745 CTACAGGTGCACCGAGCTC 60.154 63.158 29.68 2.73 45.94 4.09
900 901 2.973899 CTACAGGTGCACCGAGCT 59.026 61.111 29.68 15.40 45.94 4.09
901 902 2.815647 GCTACAGGTGCACCGAGC 60.816 66.667 31.38 31.38 45.96 5.03
902 903 2.656646 TGCTACAGGTGCACCGAG 59.343 61.111 29.68 26.60 42.08 4.63
907 908 0.534877 CTTGTGGTGCTACAGGTGCA 60.535 55.000 0.00 0.00 38.19 4.57
908 909 1.856265 GCTTGTGGTGCTACAGGTGC 61.856 60.000 0.54 0.00 31.05 5.01
909 910 0.250467 AGCTTGTGGTGCTACAGGTG 60.250 55.000 0.54 0.00 39.21 4.00
910 911 0.035458 GAGCTTGTGGTGCTACAGGT 59.965 55.000 0.00 0.00 41.30 4.00
911 912 0.674895 GGAGCTTGTGGTGCTACAGG 60.675 60.000 0.00 0.00 40.88 4.00
912 913 1.016130 CGGAGCTTGTGGTGCTACAG 61.016 60.000 0.00 0.00 41.24 2.74
913 914 1.005037 CGGAGCTTGTGGTGCTACA 60.005 57.895 0.00 0.00 41.24 2.74
914 915 1.741770 CCGGAGCTTGTGGTGCTAC 60.742 63.158 0.00 0.00 41.30 3.58
915 916 2.214216 ACCGGAGCTTGTGGTGCTA 61.214 57.895 9.46 0.00 41.30 3.49
916 917 3.560251 ACCGGAGCTTGTGGTGCT 61.560 61.111 9.46 0.00 44.24 4.40
917 918 3.357079 CACCGGAGCTTGTGGTGC 61.357 66.667 9.46 0.00 45.85 5.01
919 920 3.872603 TGCACCGGAGCTTGTGGT 61.873 61.111 24.52 6.83 36.10 4.16
920 921 3.357079 GTGCACCGGAGCTTGTGG 61.357 66.667 24.52 6.27 34.99 4.17
921 922 3.357079 GGTGCACCGGAGCTTGTG 61.357 66.667 22.49 4.12 34.99 3.33
922 923 3.832237 CTGGTGCACCGGAGCTTGT 62.832 63.158 37.13 0.00 45.36 3.16
923 924 3.052082 CTGGTGCACCGGAGCTTG 61.052 66.667 37.13 13.64 45.36 4.01
924 925 3.241530 TCTGGTGCACCGGAGCTT 61.242 61.111 38.27 0.00 46.04 3.74
929 930 1.676006 GGAAAATATCTGGTGCACCGG 59.324 52.381 35.06 35.06 43.86 5.28
930 931 1.676006 GGGAAAATATCTGGTGCACCG 59.324 52.381 30.07 23.48 39.43 4.94
931 932 1.676006 CGGGAAAATATCTGGTGCACC 59.324 52.381 29.67 29.67 0.00 5.01
932 933 2.614057 CTCGGGAAAATATCTGGTGCAC 59.386 50.000 8.80 8.80 0.00 4.57
933 934 2.917933 CTCGGGAAAATATCTGGTGCA 58.082 47.619 0.00 0.00 0.00 4.57
934 935 1.604278 GCTCGGGAAAATATCTGGTGC 59.396 52.381 0.00 0.00 0.00 5.01
935 936 3.199880 AGCTCGGGAAAATATCTGGTG 57.800 47.619 0.00 0.00 0.00 4.17
936 937 3.933861 AAGCTCGGGAAAATATCTGGT 57.066 42.857 0.00 0.00 0.00 4.00
937 938 4.199310 TGAAAGCTCGGGAAAATATCTGG 58.801 43.478 0.00 0.00 0.00 3.86
938 939 5.415415 CTGAAAGCTCGGGAAAATATCTG 57.585 43.478 0.00 0.00 0.00 2.90
949 950 2.704572 AGAAACATCCTGAAAGCTCGG 58.295 47.619 0.00 0.00 0.00 4.63
950 951 5.862924 TTTAGAAACATCCTGAAAGCTCG 57.137 39.130 0.00 0.00 0.00 5.03
977 978 1.920532 GGGTTATCCCGGGAGCTTT 59.079 57.895 30.42 14.95 44.74 3.51
998 999 2.403987 CGAATCGAGTCGAGCCGT 59.596 61.111 29.50 5.97 43.86 5.68
1017 1018 2.403252 GGATTCCATCACCGAGTGTT 57.597 50.000 0.00 0.00 34.79 3.32
1108 1109 0.690411 ATGCTGTGGAGAGGAGGAGG 60.690 60.000 0.00 0.00 0.00 4.30
1185 1762 0.926293 GGATGGATTGGGGACTTGGA 59.074 55.000 0.00 0.00 0.00 3.53
1211 1795 3.008375 AGCAGTGAAGGATTTGTGCTCTA 59.992 43.478 0.00 0.00 34.80 2.43
1228 1812 2.092538 AGAGCAAAGGCATGATAGCAGT 60.093 45.455 0.00 0.00 44.61 4.40
1235 1819 1.817357 CAGTCAGAGCAAAGGCATGA 58.183 50.000 0.00 0.00 44.61 3.07
1254 1838 2.874701 AGTGCAGATTGGATGTTATCGC 59.125 45.455 0.00 0.00 0.00 4.58
1260 1844 3.244875 TGGTAACAGTGCAGATTGGATGT 60.245 43.478 0.00 0.00 46.17 3.06
1442 2026 4.451435 AGGAAGAAGCAAGCTACGTAAAAC 59.549 41.667 0.00 0.00 0.00 2.43
1524 2111 6.047870 CCCTGAAAATGTGAACAAATGTGAA 58.952 36.000 0.00 0.00 0.00 3.18
1525 2112 5.128499 ACCCTGAAAATGTGAACAAATGTGA 59.872 36.000 0.00 0.00 0.00 3.58
1526 2113 5.358922 ACCCTGAAAATGTGAACAAATGTG 58.641 37.500 0.00 0.00 0.00 3.21
1527 2114 5.612725 ACCCTGAAAATGTGAACAAATGT 57.387 34.783 0.00 0.00 0.00 2.71
1528 2115 6.511416 TGTACCCTGAAAATGTGAACAAATG 58.489 36.000 0.00 0.00 0.00 2.32
1529 2116 6.723298 TGTACCCTGAAAATGTGAACAAAT 57.277 33.333 0.00 0.00 0.00 2.32
1530 2117 5.451242 GCTGTACCCTGAAAATGTGAACAAA 60.451 40.000 0.00 0.00 0.00 2.83
1531 2118 4.037446 GCTGTACCCTGAAAATGTGAACAA 59.963 41.667 0.00 0.00 0.00 2.83
1532 2119 3.568007 GCTGTACCCTGAAAATGTGAACA 59.432 43.478 0.00 0.00 0.00 3.18
1533 2120 3.364964 CGCTGTACCCTGAAAATGTGAAC 60.365 47.826 0.00 0.00 0.00 3.18
1569 2156 0.387929 CATGCATAGCCTTTGCCCAG 59.612 55.000 0.00 0.00 39.39 4.45
1644 2231 7.555965 AGCTTCAAACAGGTAACAAAAGAAAT 58.444 30.769 0.00 0.00 41.41 2.17
1709 2296 3.696051 GCAAAATACAATGCCTCCTCTGA 59.304 43.478 0.00 0.00 36.56 3.27
1713 2300 3.700538 TGAGCAAAATACAATGCCTCCT 58.299 40.909 0.00 0.00 43.57 3.69
1829 2416 6.744112 AGTCACTTTTCCATTTTAATTCGCA 58.256 32.000 0.00 0.00 0.00 5.10
1940 2527 7.433680 ACAAAATAAAACCAGTCAGACATTCC 58.566 34.615 2.66 0.00 0.00 3.01
2020 2607 5.639082 GGTATTTTTCTTTGTTGGGATGCAG 59.361 40.000 0.00 0.00 0.00 4.41
2044 2631 1.238439 ACCATCAAAGTTGGAGTGCG 58.762 50.000 1.37 0.00 37.69 5.34
2442 3038 2.554032 CACCAAACCTCTTCACCACATC 59.446 50.000 0.00 0.00 0.00 3.06
2466 3062 4.051237 CAGACTCGTGAAACATTCAGACA 58.949 43.478 0.00 0.00 41.01 3.41
2500 3100 6.070656 AGTCAATTTTCCTTCCTCATGTCAA 58.929 36.000 0.00 0.00 0.00 3.18
2521 3121 1.448013 GAGCAACTGGGGCGTAGTC 60.448 63.158 0.00 0.00 36.08 2.59
2553 3153 4.618920 TTTTAGAGACAGGGTCCTCAAC 57.381 45.455 0.00 0.00 32.18 3.18
2614 3214 3.005472 CCATTGGAGATGCCTAGCAAATG 59.995 47.826 0.00 0.00 43.62 2.32
2615 3215 3.228453 CCATTGGAGATGCCTAGCAAAT 58.772 45.455 0.00 0.00 43.62 2.32
2618 3218 0.179009 GCCATTGGAGATGCCTAGCA 60.179 55.000 6.95 0.00 44.86 3.49
2619 3219 0.179009 TGCCATTGGAGATGCCTAGC 60.179 55.000 6.95 0.00 37.63 3.42
2620 3220 1.952296 GTTGCCATTGGAGATGCCTAG 59.048 52.381 6.95 0.00 37.63 3.02
2621 3221 1.565759 AGTTGCCATTGGAGATGCCTA 59.434 47.619 6.95 0.00 37.63 3.93
2634 3252 4.348486 TGCCCTAAATTTATGAGTTGCCA 58.652 39.130 0.00 0.00 0.00 4.92
2641 3259 5.465390 CGTTCGAGATGCCCTAAATTTATGA 59.535 40.000 0.00 0.00 0.00 2.15
2661 3279 2.710220 AATTTTACGGGTTGCCGTTC 57.290 45.000 0.00 0.00 44.38 3.95
2664 3282 2.414957 GGAGAAATTTTACGGGTTGCCG 60.415 50.000 0.00 0.00 39.31 5.69
2667 3285 2.414957 GCGGGAGAAATTTTACGGGTTG 60.415 50.000 0.00 0.00 0.00 3.77
2678 3296 0.462047 GACACGGATGCGGGAGAAAT 60.462 55.000 18.37 0.00 0.00 2.17
2681 3299 0.467474 ATAGACACGGATGCGGGAGA 60.467 55.000 18.37 0.00 0.00 3.71
2698 3316 5.125367 TGCTCTAAGTAGACCAGTCCATA 57.875 43.478 0.00 0.00 0.00 2.74
2737 4281 1.474330 GGATGCGGGAGGAAATTTGT 58.526 50.000 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.