Multiple sequence alignment - TraesCS3A01G219100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G219100 chr3A 100.000 6635 0 0 1 6635 402080175 402086809 0.000000e+00 12253.0
1 TraesCS3A01G219100 chr3A 87.179 117 15 0 6506 6622 298156294 298156178 4.170000e-27 134.0
2 TraesCS3A01G219100 chr3A 87.500 112 14 0 6508 6619 28115236 28115347 5.400000e-26 130.0
3 TraesCS3A01G219100 chr3A 100.000 51 0 0 6239 6289 402086385 402086435 1.970000e-15 95.3
4 TraesCS3A01G219100 chr3A 100.000 51 0 0 6211 6261 402086413 402086463 1.970000e-15 95.3
5 TraesCS3A01G219100 chr3B 93.593 3590 131 45 699 4238 397662145 397665685 0.000000e+00 5264.0
6 TraesCS3A01G219100 chr3B 94.911 1906 60 13 4338 6233 397665906 397667784 0.000000e+00 2948.0
7 TraesCS3A01G219100 chr3B 95.618 251 9 1 6259 6507 397667754 397668004 1.040000e-107 401.0
8 TraesCS3A01G219100 chr3B 79.268 246 36 10 3665 3899 42700087 42700328 2.480000e-34 158.0
9 TraesCS3A01G219100 chr3D 93.823 2477 87 25 726 3169 321888684 321886241 0.000000e+00 3666.0
10 TraesCS3A01G219100 chr3D 96.325 1959 46 11 4283 6233 321884700 321882760 0.000000e+00 3195.0
11 TraesCS3A01G219100 chr3D 96.723 1068 30 4 3171 4233 321886036 321884969 0.000000e+00 1773.0
12 TraesCS3A01G219100 chr3D 87.598 508 62 1 40 547 211039512 211040018 7.410000e-164 588.0
13 TraesCS3A01G219100 chr3D 95.082 244 12 0 6258 6501 321882791 321882548 1.040000e-102 385.0
14 TraesCS3A01G219100 chr3D 97.561 41 1 0 590 630 321889072 321889032 3.320000e-08 71.3
15 TraesCS3A01G219100 chr3D 100.000 32 0 0 6230 6261 321882791 321882760 7.190000e-05 60.2
16 TraesCS3A01G219100 chr7D 86.996 546 70 1 1 546 277316182 277316726 1.220000e-171 614.0
17 TraesCS3A01G219100 chr7D 85.740 547 75 3 1 546 324513552 324513008 5.770000e-160 575.0
18 TraesCS3A01G219100 chr7D 85.165 546 79 2 1 546 304572667 304573210 5.810000e-155 558.0
19 TraesCS3A01G219100 chr1D 86.813 546 71 1 1 546 160010545 160010001 5.690000e-170 608.0
20 TraesCS3A01G219100 chr5D 86.106 547 73 3 1 546 181031661 181031117 2.670000e-163 586.0
21 TraesCS3A01G219100 chr5D 90.517 116 11 0 6507 6622 381034196 381034311 3.200000e-33 154.0
22 TraesCS3A01G219100 chr5D 85.246 122 16 2 6499 6619 356638523 356638643 2.510000e-24 124.0
23 TraesCS3A01G219100 chr2A 85.714 546 76 2 2 546 318109920 318109376 5.770000e-160 575.0
24 TraesCS3A01G219100 chr2A 90.741 108 6 3 3744 3849 149211669 149211774 2.490000e-29 141.0
25 TraesCS3A01G219100 chr6A 85.165 546 79 2 1 546 266372120 266371577 5.810000e-155 558.0
26 TraesCS3A01G219100 chr5A 85.009 547 81 1 1 547 341806906 341807451 7.520000e-154 555.0
27 TraesCS3A01G219100 chr4D 84.711 242 26 7 3662 3895 476316578 476316816 1.440000e-56 231.0
28 TraesCS3A01G219100 chr4B 84.937 239 25 7 3665 3895 600671925 600672160 1.440000e-56 231.0
29 TraesCS3A01G219100 chr7A 93.333 120 8 0 6504 6623 735873741 735873860 1.900000e-40 178.0
30 TraesCS3A01G219100 chr7A 88.393 112 13 0 6508 6619 519567159 519567270 1.160000e-27 135.0
31 TraesCS3A01G219100 chr2B 87.037 162 6 5 3744 3902 210455080 210454931 1.140000e-37 169.0
32 TraesCS3A01G219100 chr2D 86.503 163 6 7 3744 3902 152095894 152095744 1.480000e-36 165.0
33 TraesCS3A01G219100 chr4A 82.653 196 21 6 3665 3848 683500760 683500954 1.910000e-35 161.0
34 TraesCS3A01G219100 chr4A 91.379 116 10 0 6508 6623 223855249 223855134 6.890000e-35 159.0
35 TraesCS3A01G219100 chr4A 86.325 117 14 2 6508 6623 631131650 631131535 6.980000e-25 126.0
36 TraesCS3A01G219100 chr4A 97.368 38 1 0 2705 2742 741777563 741777600 1.540000e-06 65.8
37 TraesCS3A01G219100 chr4A 94.737 38 2 0 2705 2742 739742143 739742106 7.190000e-05 60.2
38 TraesCS3A01G219100 chr4A 94.737 38 2 0 2705 2742 740159109 740159072 7.190000e-05 60.2
39 TraesCS3A01G219100 chr1A 87.500 112 14 0 6508 6619 516825298 516825409 5.400000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G219100 chr3A 402080175 402086809 6634 False 4147.866667 12253 100.000000 1 6635 3 chr3A.!!$F2 6634
1 TraesCS3A01G219100 chr3B 397662145 397668004 5859 False 2871.000000 5264 94.707333 699 6507 3 chr3B.!!$F2 5808
2 TraesCS3A01G219100 chr3D 321882548 321889072 6524 True 1525.083333 3666 96.585667 590 6501 6 chr3D.!!$R1 5911
3 TraesCS3A01G219100 chr3D 211039512 211040018 506 False 588.000000 588 87.598000 40 547 1 chr3D.!!$F1 507
4 TraesCS3A01G219100 chr7D 277316182 277316726 544 False 614.000000 614 86.996000 1 546 1 chr7D.!!$F1 545
5 TraesCS3A01G219100 chr7D 324513008 324513552 544 True 575.000000 575 85.740000 1 546 1 chr7D.!!$R1 545
6 TraesCS3A01G219100 chr7D 304572667 304573210 543 False 558.000000 558 85.165000 1 546 1 chr7D.!!$F2 545
7 TraesCS3A01G219100 chr1D 160010001 160010545 544 True 608.000000 608 86.813000 1 546 1 chr1D.!!$R1 545
8 TraesCS3A01G219100 chr5D 181031117 181031661 544 True 586.000000 586 86.106000 1 546 1 chr5D.!!$R1 545
9 TraesCS3A01G219100 chr2A 318109376 318109920 544 True 575.000000 575 85.714000 2 546 1 chr2A.!!$R1 544
10 TraesCS3A01G219100 chr6A 266371577 266372120 543 True 558.000000 558 85.165000 1 546 1 chr6A.!!$R1 545
11 TraesCS3A01G219100 chr5A 341806906 341807451 545 False 555.000000 555 85.009000 1 547 1 chr5A.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 1159 0.247736 CTTGTCCTTGACCTCCTCCG 59.752 60.0 0.0 0.0 0.00 4.63 F
1739 2015 0.038892 TCGGTGTAGAAACTCGTGGC 60.039 55.0 0.0 0.0 0.00 5.01 F
2291 2575 1.128200 TGGGGTATATGAAGCAGCGT 58.872 50.0 0.0 0.0 0.00 5.07 F
4271 4808 0.478507 AGTTGAAGGGACACTTGGGG 59.521 55.0 0.0 0.0 40.21 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2775 3089 0.326595 TCATGGCCGCTTCTTAACCA 59.673 50.0 0.00 0.0 34.28 3.67 R
2977 3306 0.744771 GTCCTCCCCGCATGAGAAAC 60.745 60.0 0.00 0.0 31.26 2.78 R
4281 4818 0.179116 TCTCTCTGAGCGCTCATTGC 60.179 55.0 38.11 13.6 39.13 3.56 R
6006 6766 1.472188 AACGGTACAGGGTAGAGAGC 58.528 55.0 0.00 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.283625 ACAATGCTATCTCACCTAACTCTAG 57.716 40.000 0.00 0.00 0.00 2.43
37 38 5.265191 TCACCTAACTCTAGAAGCTGACAT 58.735 41.667 0.00 0.00 0.00 3.06
131 132 2.986306 GCGCCTGCTTGCTTGACAT 61.986 57.895 0.00 0.00 38.39 3.06
158 159 4.410400 CGGGTGTCCCTTGGAGGC 62.410 72.222 3.25 0.00 42.67 4.70
210 211 4.449743 GCGAATAACAACCACTTAGTCACA 59.550 41.667 0.00 0.00 0.00 3.58
230 231 0.955428 TTGGAGCTTGACATCGCACC 60.955 55.000 6.73 6.73 37.40 5.01
262 263 1.577328 GCGTTGTGATGAGGTGGTGG 61.577 60.000 0.00 0.00 0.00 4.61
277 278 2.120940 TGGGGTGGAGCGGTTCTA 59.879 61.111 0.00 0.00 0.00 2.10
294 295 0.750911 CTACCTCCGTAAGCCTCGGT 60.751 60.000 10.69 0.00 46.86 4.69
396 398 7.882755 AGGTTTTTCCCCTTGATGATATCTTA 58.117 34.615 3.98 0.00 36.75 2.10
400 402 9.768215 TTTTTCCCCTTGATGATATCTTACTTT 57.232 29.630 3.98 0.00 0.00 2.66
403 405 7.518188 TCCCCTTGATGATATCTTACTTTTCC 58.482 38.462 3.98 0.00 0.00 3.13
436 438 1.481819 CCTTTTGTGCTGCACGTTGC 61.482 55.000 25.88 4.27 45.29 4.17
446 448 0.602638 TGCACGTTGCTCCTTCGAAT 60.603 50.000 0.00 0.00 45.31 3.34
462 464 2.635915 TCGAATAACTGACCCCTTGTGT 59.364 45.455 0.00 0.00 0.00 3.72
478 480 5.123227 CCTTGTGTTTTAGTCTGACCTTGA 58.877 41.667 3.76 0.00 0.00 3.02
516 518 2.306847 TGTGTCTGTGCACAGTCTAGA 58.693 47.619 38.41 23.96 43.54 2.43
525 527 1.000607 GCACAGTCTAGACAACGGACA 60.001 52.381 24.44 0.00 32.98 4.02
547 549 0.387565 GGGTTTGTTGCACCGACAAT 59.612 50.000 3.40 0.00 37.55 2.71
548 550 1.486439 GGTTTGTTGCACCGACAATG 58.514 50.000 3.40 0.00 37.55 2.82
549 551 1.066303 GGTTTGTTGCACCGACAATGA 59.934 47.619 3.40 0.00 37.55 2.57
550 552 2.288152 GGTTTGTTGCACCGACAATGAT 60.288 45.455 3.40 0.00 37.55 2.45
551 553 2.702898 TTGTTGCACCGACAATGATG 57.297 45.000 0.00 0.00 33.39 3.07
552 554 1.889545 TGTTGCACCGACAATGATGA 58.110 45.000 0.00 0.00 0.00 2.92
553 555 2.435422 TGTTGCACCGACAATGATGAT 58.565 42.857 0.00 0.00 0.00 2.45
554 556 2.419673 TGTTGCACCGACAATGATGATC 59.580 45.455 0.00 0.00 0.00 2.92
555 557 1.667236 TGCACCGACAATGATGATCC 58.333 50.000 0.00 0.00 0.00 3.36
556 558 1.210234 TGCACCGACAATGATGATCCT 59.790 47.619 0.00 0.00 0.00 3.24
557 559 1.869767 GCACCGACAATGATGATCCTC 59.130 52.381 0.00 0.00 0.00 3.71
558 560 2.487934 CACCGACAATGATGATCCTCC 58.512 52.381 0.00 0.00 0.00 4.30
559 561 2.103771 CACCGACAATGATGATCCTCCT 59.896 50.000 0.00 0.00 0.00 3.69
560 562 2.103771 ACCGACAATGATGATCCTCCTG 59.896 50.000 0.00 0.00 0.00 3.86
561 563 2.366590 CCGACAATGATGATCCTCCTGA 59.633 50.000 0.00 0.00 0.00 3.86
562 564 3.007723 CCGACAATGATGATCCTCCTGAT 59.992 47.826 0.00 0.00 36.01 2.90
563 565 4.504514 CCGACAATGATGATCCTCCTGATT 60.505 45.833 0.00 0.00 32.41 2.57
564 566 4.689812 CGACAATGATGATCCTCCTGATTC 59.310 45.833 0.00 0.00 32.41 2.52
565 567 4.983053 ACAATGATGATCCTCCTGATTCC 58.017 43.478 0.00 0.00 32.41 3.01
566 568 4.664064 ACAATGATGATCCTCCTGATTCCT 59.336 41.667 0.00 0.00 32.41 3.36
567 569 5.221884 ACAATGATGATCCTCCTGATTCCTC 60.222 44.000 0.00 0.00 32.41 3.71
568 570 4.210611 TGATGATCCTCCTGATTCCTCT 57.789 45.455 0.00 0.00 32.41 3.69
569 571 4.564799 TGATGATCCTCCTGATTCCTCTT 58.435 43.478 0.00 0.00 32.41 2.85
570 572 4.592351 TGATGATCCTCCTGATTCCTCTTC 59.408 45.833 0.00 0.00 32.41 2.87
571 573 2.961741 TGATCCTCCTGATTCCTCTTCG 59.038 50.000 0.00 0.00 32.41 3.79
572 574 2.828661 TCCTCCTGATTCCTCTTCGA 57.171 50.000 0.00 0.00 0.00 3.71
573 575 3.320610 TCCTCCTGATTCCTCTTCGAT 57.679 47.619 0.00 0.00 0.00 3.59
574 576 2.961741 TCCTCCTGATTCCTCTTCGATG 59.038 50.000 0.00 0.00 0.00 3.84
575 577 2.961741 CCTCCTGATTCCTCTTCGATGA 59.038 50.000 0.63 0.63 0.00 2.92
576 578 3.386078 CCTCCTGATTCCTCTTCGATGAA 59.614 47.826 2.36 0.00 0.00 2.57
577 579 4.367450 CTCCTGATTCCTCTTCGATGAAC 58.633 47.826 2.36 0.00 0.00 3.18
578 580 4.026744 TCCTGATTCCTCTTCGATGAACT 58.973 43.478 2.36 0.00 0.00 3.01
579 581 4.467795 TCCTGATTCCTCTTCGATGAACTT 59.532 41.667 2.36 0.00 0.00 2.66
580 582 4.569966 CCTGATTCCTCTTCGATGAACTTG 59.430 45.833 2.36 0.00 0.00 3.16
581 583 5.152623 TGATTCCTCTTCGATGAACTTGT 57.847 39.130 2.36 0.00 0.00 3.16
582 584 5.551233 TGATTCCTCTTCGATGAACTTGTT 58.449 37.500 2.36 0.00 0.00 2.83
583 585 6.697395 TGATTCCTCTTCGATGAACTTGTTA 58.303 36.000 2.36 0.00 0.00 2.41
584 586 7.158697 TGATTCCTCTTCGATGAACTTGTTAA 58.841 34.615 2.36 0.00 0.00 2.01
585 587 6.780706 TTCCTCTTCGATGAACTTGTTAAC 57.219 37.500 0.00 0.00 0.00 2.01
586 588 4.921515 TCCTCTTCGATGAACTTGTTAACG 59.078 41.667 0.26 0.00 0.00 3.18
587 589 4.921515 CCTCTTCGATGAACTTGTTAACGA 59.078 41.667 0.26 0.00 0.00 3.85
588 590 5.577164 CCTCTTCGATGAACTTGTTAACGAT 59.423 40.000 0.26 0.00 0.00 3.73
593 595 7.041187 TCGATGAACTTGTTAACGATGTAAC 57.959 36.000 0.26 0.00 35.02 2.50
630 632 2.166829 ACAAAGTGTGCCACAAGTTCA 58.833 42.857 0.00 0.00 36.74 3.18
632 634 3.195396 ACAAAGTGTGCCACAAGTTCATT 59.805 39.130 0.00 0.00 36.74 2.57
633 635 4.183101 CAAAGTGTGCCACAAGTTCATTT 58.817 39.130 0.00 0.00 36.74 2.32
635 637 4.470334 AGTGTGCCACAAGTTCATTTTT 57.530 36.364 0.00 0.00 36.74 1.94
781 1049 1.694696 GAACACTTGTCACTCTCCCCT 59.305 52.381 0.00 0.00 0.00 4.79
889 1159 0.247736 CTTGTCCTTGACCTCCTCCG 59.752 60.000 0.00 0.00 0.00 4.63
1379 1652 0.760945 TGGAATGCCCCGTTTGGTTT 60.761 50.000 0.00 0.00 0.00 3.27
1383 1656 1.468506 ATGCCCCGTTTGGTTTGGTC 61.469 55.000 0.00 0.00 0.00 4.02
1469 1742 0.688087 ATCCTCCTGTCGGTCCCTTC 60.688 60.000 0.00 0.00 0.00 3.46
1485 1758 0.391263 CTTCGGTACCAAGGTGAGGC 60.391 60.000 13.54 0.00 0.00 4.70
1489 1762 0.609662 GGTACCAAGGTGAGGCGTTA 59.390 55.000 7.15 0.00 0.00 3.18
1505 1781 7.871463 GTGAGGCGTTAATACTATTATCTTGGT 59.129 37.037 0.00 0.00 0.00 3.67
1519 1795 7.765695 ATTATCTTGGTTGTCTGTGATTTGT 57.234 32.000 0.00 0.00 0.00 2.83
1522 1798 4.946772 TCTTGGTTGTCTGTGATTTGTTCA 59.053 37.500 0.00 0.00 0.00 3.18
1531 1807 7.706159 TGTCTGTGATTTGTTCATAATATGGC 58.294 34.615 0.00 0.00 36.54 4.40
1532 1808 7.338957 TGTCTGTGATTTGTTCATAATATGGCA 59.661 33.333 0.00 0.00 36.54 4.92
1547 1823 8.920174 CATAATATGGCAAATGGGATCATACAT 58.080 33.333 0.00 0.00 32.44 2.29
1553 1829 4.304110 CAAATGGGATCATACATGCTTGC 58.696 43.478 0.00 0.00 32.44 4.01
1557 1833 2.812591 GGGATCATACATGCTTGCTCTG 59.187 50.000 0.00 0.00 0.00 3.35
1558 1834 3.474600 GGATCATACATGCTTGCTCTGT 58.525 45.455 0.00 6.62 0.00 3.41
1559 1835 3.881688 GGATCATACATGCTTGCTCTGTT 59.118 43.478 0.00 0.00 0.00 3.16
1560 1836 4.337555 GGATCATACATGCTTGCTCTGTTT 59.662 41.667 0.00 0.00 0.00 2.83
1561 1837 5.528690 GGATCATACATGCTTGCTCTGTTTA 59.471 40.000 0.00 0.00 0.00 2.01
1562 1838 6.293298 GGATCATACATGCTTGCTCTGTTTAG 60.293 42.308 0.00 0.00 0.00 1.85
1563 1839 4.877823 TCATACATGCTTGCTCTGTTTAGG 59.122 41.667 0.00 0.00 0.00 2.69
1564 1840 3.146104 ACATGCTTGCTCTGTTTAGGT 57.854 42.857 0.00 0.00 0.00 3.08
1565 1841 3.490348 ACATGCTTGCTCTGTTTAGGTT 58.510 40.909 0.00 0.00 0.00 3.50
1566 1842 3.503748 ACATGCTTGCTCTGTTTAGGTTC 59.496 43.478 0.00 0.00 0.00 3.62
1567 1843 3.207265 TGCTTGCTCTGTTTAGGTTCA 57.793 42.857 0.00 0.00 0.00 3.18
1568 1844 3.754965 TGCTTGCTCTGTTTAGGTTCAT 58.245 40.909 0.00 0.00 0.00 2.57
1569 1845 3.753272 TGCTTGCTCTGTTTAGGTTCATC 59.247 43.478 0.00 0.00 0.00 2.92
1570 1846 3.181516 GCTTGCTCTGTTTAGGTTCATCG 60.182 47.826 0.00 0.00 0.00 3.84
1584 1860 0.684535 TCATCGGAGCACTTTGGTGA 59.315 50.000 0.00 0.00 45.61 4.02
1651 1927 6.811954 TCGTGCATGTATCTTTCCAGTAATA 58.188 36.000 5.68 0.00 0.00 0.98
1722 1998 4.879545 TCATCAATATGCCATCATCCATCG 59.120 41.667 0.00 0.00 34.22 3.84
1739 2015 0.038892 TCGGTGTAGAAACTCGTGGC 60.039 55.000 0.00 0.00 0.00 5.01
1804 2080 4.040829 CCTGTCTACCATAGCATCAATGGA 59.959 45.833 9.02 0.00 45.77 3.41
1805 2081 4.960938 TGTCTACCATAGCATCAATGGAC 58.039 43.478 9.02 1.69 45.77 4.02
1806 2082 4.408596 TGTCTACCATAGCATCAATGGACA 59.591 41.667 9.02 4.00 45.77 4.02
1807 2083 5.104569 TGTCTACCATAGCATCAATGGACAA 60.105 40.000 9.02 0.00 45.77 3.18
1808 2084 6.000219 GTCTACCATAGCATCAATGGACAAT 59.000 40.000 9.02 0.00 45.77 2.71
1809 2085 5.999600 TCTACCATAGCATCAATGGACAATG 59.000 40.000 9.02 0.00 45.77 2.82
1810 2086 3.893200 ACCATAGCATCAATGGACAATGG 59.107 43.478 9.02 0.00 45.77 3.16
1814 2090 2.756760 AGCATCAATGGACAATGGTCAC 59.243 45.455 1.86 0.00 46.17 3.67
1896 2172 6.321181 TGATTTTATGAGTTATGACCAAGGGC 59.679 38.462 0.00 0.00 0.00 5.19
1906 2182 1.698532 TGACCAAGGGCGTAAACCTTA 59.301 47.619 0.00 0.00 46.25 2.69
1998 2274 5.352846 GGATCTCTGTTGCCTTAAACTTCTC 59.647 44.000 0.00 0.00 0.00 2.87
2042 2319 9.139734 ACTGGTTCATTATCTTATGCATTTCAT 57.860 29.630 3.54 0.00 39.17 2.57
2072 2355 4.116238 TGTGTGTGTGTGTGTGTGTATAG 58.884 43.478 0.00 0.00 0.00 1.31
2083 2366 9.967346 GTGTGTGTGTGTATAGAGATATAATGT 57.033 33.333 0.00 0.00 0.00 2.71
2136 2419 6.633500 AGCAGTGTAATTCAAAAGCTGTTA 57.367 33.333 0.00 0.00 31.70 2.41
2254 2537 2.979678 ACAGAGGTCCCACAGTACAAAT 59.020 45.455 0.00 0.00 0.00 2.32
2291 2575 1.128200 TGGGGTATATGAAGCAGCGT 58.872 50.000 0.00 0.00 0.00 5.07
2401 2687 1.627297 CCCCTCTGCCTCCACTTACC 61.627 65.000 0.00 0.00 0.00 2.85
2452 2739 1.345741 CCTCTCCTTGCTCTTCACACA 59.654 52.381 0.00 0.00 0.00 3.72
2465 2752 1.302431 CACACAATGGCCGAGGACA 60.302 57.895 0.00 0.00 37.65 4.02
2483 2770 1.766059 ACCCAGAGTGTCAGCACCA 60.766 57.895 0.00 0.00 46.35 4.17
2603 2914 1.301716 CCACACAAGCTGTACGGCT 60.302 57.895 23.79 23.79 45.30 5.52
2621 2935 1.803252 GCTAGCAGTAGTTTCCTCCGC 60.803 57.143 10.63 0.00 0.00 5.54
2969 3298 2.762535 CGGGAGCCGGAAATATATGT 57.237 50.000 5.05 0.00 44.15 2.29
2977 3306 2.026262 CCGGAAATATATGTCCCTGGGG 60.026 54.545 15.27 7.60 0.00 4.96
3028 3357 4.132336 GTGGAGACGGTAGTTTTCCTTTT 58.868 43.478 0.00 0.00 36.19 2.27
3092 3421 2.918131 GCTACTTGTTTGGCTCAAAGCG 60.918 50.000 1.21 0.00 43.62 4.68
3126 3455 1.832219 CCCCGAAGATGCCAGATGA 59.168 57.895 0.00 0.00 0.00 2.92
3169 3498 1.324740 TACCACGAACCGGGAGATGG 61.325 60.000 6.32 11.05 28.17 3.51
3176 3708 2.612212 CGAACCGGGAGATGGTATTTTG 59.388 50.000 6.32 0.00 39.29 2.44
3235 3767 1.838568 GAGGCAACCGAACGGAACAC 61.839 60.000 20.14 7.33 38.96 3.32
3483 4015 6.042208 TGTGAATACCCGTCATAATATGTCCA 59.958 38.462 0.00 0.00 0.00 4.02
3487 4019 4.641396 ACCCGTCATAATATGTCCATGTG 58.359 43.478 0.00 0.00 0.00 3.21
3624 4156 3.784511 TGATTACACGGGGTAAACCAA 57.215 42.857 6.97 0.00 44.70 3.67
3880 4415 1.737199 TTGGTAAGGCTAGTGTGGGT 58.263 50.000 0.00 0.00 0.00 4.51
4029 4564 4.783036 CGTTTTATTGATCACAGTGAAGCG 59.217 41.667 7.50 0.00 32.76 4.68
4031 4566 0.723414 ATTGATCACAGTGAAGCGCG 59.277 50.000 7.50 0.00 0.00 6.86
4032 4567 1.900585 TTGATCACAGTGAAGCGCGC 61.901 55.000 26.66 26.66 0.00 6.86
4033 4568 3.411703 GATCACAGTGAAGCGCGCG 62.412 63.158 28.44 28.44 0.00 6.86
4123 4660 5.236478 ACAGAATTCAGAACAGTAACAACGG 59.764 40.000 8.44 0.00 0.00 4.44
4161 4698 3.957586 CTGGTGGCAGTGGCTCCA 61.958 66.667 31.27 31.27 39.92 3.86
4175 4712 0.676736 GCTCCATCTCCCCTAACTCG 59.323 60.000 0.00 0.00 0.00 4.18
4238 4775 2.289444 TGGGTGAAGCAGTAGTAGCAAC 60.289 50.000 0.00 0.00 0.00 4.17
4240 4777 2.352421 GGTGAAGCAGTAGTAGCAACGA 60.352 50.000 0.00 0.00 0.00 3.85
4241 4778 3.314553 GTGAAGCAGTAGTAGCAACGAA 58.685 45.455 0.00 0.00 0.00 3.85
4242 4779 3.365220 GTGAAGCAGTAGTAGCAACGAAG 59.635 47.826 0.00 0.00 0.00 3.79
4243 4780 2.656560 AGCAGTAGTAGCAACGAAGG 57.343 50.000 0.00 0.00 0.00 3.46
4244 4781 2.168496 AGCAGTAGTAGCAACGAAGGA 58.832 47.619 0.00 0.00 0.00 3.36
4245 4782 2.094649 AGCAGTAGTAGCAACGAAGGAC 60.095 50.000 0.00 0.00 0.00 3.85
4246 4783 2.094649 GCAGTAGTAGCAACGAAGGACT 60.095 50.000 0.00 0.00 0.00 3.85
4247 4784 3.502920 CAGTAGTAGCAACGAAGGACTG 58.497 50.000 0.00 0.00 0.00 3.51
4248 4785 2.492484 AGTAGTAGCAACGAAGGACTGG 59.508 50.000 0.00 0.00 0.00 4.00
4249 4786 1.339097 AGTAGCAACGAAGGACTGGT 58.661 50.000 0.00 0.00 0.00 4.00
4250 4787 1.692519 AGTAGCAACGAAGGACTGGTT 59.307 47.619 0.00 0.00 0.00 3.67
4251 4788 2.104281 AGTAGCAACGAAGGACTGGTTT 59.896 45.455 0.00 0.00 0.00 3.27
4252 4789 2.922740 AGCAACGAAGGACTGGTTTA 57.077 45.000 0.00 0.00 0.00 2.01
4253 4790 2.767505 AGCAACGAAGGACTGGTTTAG 58.232 47.619 0.00 0.00 0.00 1.85
4254 4791 2.104281 AGCAACGAAGGACTGGTTTAGT 59.896 45.455 0.00 0.00 44.02 2.24
4255 4792 2.876550 GCAACGAAGGACTGGTTTAGTT 59.123 45.455 0.00 0.00 40.53 2.24
4256 4793 3.303791 GCAACGAAGGACTGGTTTAGTTG 60.304 47.826 0.00 6.04 40.53 3.16
4257 4794 4.124238 CAACGAAGGACTGGTTTAGTTGA 58.876 43.478 0.00 0.00 40.23 3.18
4258 4795 4.411256 ACGAAGGACTGGTTTAGTTGAA 57.589 40.909 0.00 0.00 40.53 2.69
4259 4796 4.377897 ACGAAGGACTGGTTTAGTTGAAG 58.622 43.478 0.00 0.00 40.53 3.02
4260 4797 3.746492 CGAAGGACTGGTTTAGTTGAAGG 59.254 47.826 0.00 0.00 40.53 3.46
4261 4798 3.790089 AGGACTGGTTTAGTTGAAGGG 57.210 47.619 0.00 0.00 40.53 3.95
4262 4799 3.323775 AGGACTGGTTTAGTTGAAGGGA 58.676 45.455 0.00 0.00 40.53 4.20
4263 4800 3.072622 AGGACTGGTTTAGTTGAAGGGAC 59.927 47.826 0.00 0.00 40.53 4.46
4264 4801 3.181448 GGACTGGTTTAGTTGAAGGGACA 60.181 47.826 0.00 0.00 40.53 4.02
4265 4802 3.813724 GACTGGTTTAGTTGAAGGGACAC 59.186 47.826 0.00 0.00 40.53 3.67
4266 4803 3.458487 ACTGGTTTAGTTGAAGGGACACT 59.542 43.478 0.00 0.00 35.67 3.55
4267 4804 4.079958 ACTGGTTTAGTTGAAGGGACACTT 60.080 41.667 0.00 0.00 38.20 3.16
4268 4805 4.204012 TGGTTTAGTTGAAGGGACACTTG 58.796 43.478 0.00 0.00 40.21 3.16
4269 4806 3.568430 GGTTTAGTTGAAGGGACACTTGG 59.432 47.826 0.00 0.00 40.21 3.61
4270 4807 3.502123 TTAGTTGAAGGGACACTTGGG 57.498 47.619 0.00 0.00 40.21 4.12
4271 4808 0.478507 AGTTGAAGGGACACTTGGGG 59.521 55.000 0.00 0.00 40.21 4.96
4272 4809 0.539669 GTTGAAGGGACACTTGGGGG 60.540 60.000 0.00 0.00 40.21 5.40
4339 5095 3.272285 TGGATCTCAGAGAGGTAGGGAAA 59.728 47.826 6.24 0.00 0.00 3.13
4411 5167 0.684153 ACGCATTATTTGGGCCAGCT 60.684 50.000 6.23 0.00 41.83 4.24
4424 5180 5.740290 TGGGCCAGCTCTAACTATTATAC 57.260 43.478 0.00 0.00 0.00 1.47
4486 5243 8.641498 AGAATTTTCTGTGGATATCTGTTTGT 57.359 30.769 2.05 0.00 35.89 2.83
4535 5292 8.378565 ACCTCGTGATTTATGGATCTCATATTT 58.621 33.333 5.17 0.00 38.08 1.40
4620 5377 3.689347 ACTGTGAATTTGGCAGCTATGA 58.311 40.909 0.00 0.00 33.87 2.15
4825 5583 0.108207 GAGGGATGGGTCATGCTGAG 59.892 60.000 0.00 0.00 32.77 3.35
5146 5905 3.128589 TGTTTCTTGTCAACTTCAGTGCC 59.871 43.478 0.00 0.00 0.00 5.01
5172 5931 6.660521 AGTTCTCTGCCATATTGTTCATTTCA 59.339 34.615 0.00 0.00 0.00 2.69
5181 5940 8.598075 GCCATATTGTTCATTTCACTTTGATTC 58.402 33.333 0.00 0.00 0.00 2.52
5188 5947 7.502226 TGTTCATTTCACTTTGATTCTGTACCT 59.498 33.333 0.00 0.00 0.00 3.08
5542 6301 7.733402 TGGTGTATTAGGTTTTGTAACAGAC 57.267 36.000 0.00 0.00 35.92 3.51
5765 6524 0.729116 CATCAAGCAGGCGGTAGTTG 59.271 55.000 0.00 0.00 0.00 3.16
5822 6582 2.815503 TCAGATTTGTCCAGTGCATGTG 59.184 45.455 0.00 0.00 0.00 3.21
5932 6692 8.067784 CCAATTCAATCATGCAAGAATTTATGC 58.932 33.333 13.07 8.90 38.30 3.14
5938 6698 2.866198 TGCAAGAATTTATGCTGTGCG 58.134 42.857 14.91 0.00 42.97 5.34
5985 6745 0.251341 GTTCCTCACCCATGCCTTGT 60.251 55.000 0.00 0.00 0.00 3.16
5989 6749 2.311542 TCCTCACCCATGCCTTGTTAAT 59.688 45.455 0.00 0.00 0.00 1.40
5994 6754 3.091545 ACCCATGCCTTGTTAATGAGTG 58.908 45.455 0.00 0.00 0.00 3.51
5995 6755 2.159198 CCCATGCCTTGTTAATGAGTGC 60.159 50.000 0.00 0.00 0.00 4.40
6004 6764 7.170828 TGCCTTGTTAATGAGTGCGTATAATAG 59.829 37.037 0.00 0.00 0.00 1.73
6006 6766 6.684609 TGTTAATGAGTGCGTATAATAGCG 57.315 37.500 0.00 0.00 35.87 4.26
6055 6815 5.561339 GCAATTGTTTTCTCAAAATGGCCTG 60.561 40.000 3.32 0.00 32.22 4.85
6069 6829 2.529744 GCCTGGACTGACCCTTGGT 61.530 63.158 0.00 0.00 39.44 3.67
6118 6878 7.640240 GCACTTAGCTTTTGAGATAAAATACCG 59.360 37.037 0.00 0.00 41.15 4.02
6145 6905 8.195165 TCCCTTTAGATATCCTGTCTTACATG 57.805 38.462 0.00 0.00 0.00 3.21
6152 6912 4.510167 ATCCTGTCTTACATGGGGAAAG 57.490 45.455 0.00 0.00 0.00 2.62
6159 6919 5.786457 TGTCTTACATGGGGAAAGGTTAGTA 59.214 40.000 0.00 0.00 0.00 1.82
6178 6938 7.149303 GGTTAGTAAATTGTAACGTTCGTTTGC 60.149 37.037 15.40 5.91 31.06 3.68
6209 6969 2.502538 AGGAATTGTCGATACCGGGAAA 59.497 45.455 6.32 0.00 36.24 3.13
6210 6970 3.135895 AGGAATTGTCGATACCGGGAAAT 59.864 43.478 6.32 0.00 36.24 2.17
6211 6971 3.250040 GGAATTGTCGATACCGGGAAATG 59.750 47.826 6.32 0.00 36.24 2.32
6212 6972 3.830744 ATTGTCGATACCGGGAAATGA 57.169 42.857 6.32 0.00 36.24 2.57
6213 6973 3.830744 TTGTCGATACCGGGAAATGAT 57.169 42.857 6.32 0.00 36.24 2.45
6214 6974 3.106242 TGTCGATACCGGGAAATGATG 57.894 47.619 6.32 0.00 36.24 3.07
6215 6975 2.432874 TGTCGATACCGGGAAATGATGT 59.567 45.455 6.32 0.00 36.24 3.06
6216 6976 3.637694 TGTCGATACCGGGAAATGATGTA 59.362 43.478 6.32 0.00 36.24 2.29
6217 6977 4.099727 TGTCGATACCGGGAAATGATGTAA 59.900 41.667 6.32 0.00 36.24 2.41
6218 6978 5.221561 TGTCGATACCGGGAAATGATGTAAT 60.222 40.000 6.32 0.00 36.24 1.89
6219 6979 5.120208 GTCGATACCGGGAAATGATGTAATG 59.880 44.000 6.32 0.00 36.24 1.90
6220 6980 4.994852 CGATACCGGGAAATGATGTAATGT 59.005 41.667 6.32 0.00 0.00 2.71
6221 6981 5.468746 CGATACCGGGAAATGATGTAATGTT 59.531 40.000 6.32 0.00 0.00 2.71
6222 6982 6.017440 CGATACCGGGAAATGATGTAATGTTT 60.017 38.462 6.32 0.00 0.00 2.83
6223 6983 5.323371 ACCGGGAAATGATGTAATGTTTG 57.677 39.130 6.32 0.00 0.00 2.93
6224 6984 4.770010 ACCGGGAAATGATGTAATGTTTGT 59.230 37.500 6.32 0.00 0.00 2.83
6225 6985 5.101628 CCGGGAAATGATGTAATGTTTGTG 58.898 41.667 0.00 0.00 0.00 3.33
6226 6986 5.101628 CGGGAAATGATGTAATGTTTGTGG 58.898 41.667 0.00 0.00 0.00 4.17
6227 6987 5.336372 CGGGAAATGATGTAATGTTTGTGGT 60.336 40.000 0.00 0.00 0.00 4.16
6228 6988 5.868801 GGGAAATGATGTAATGTTTGTGGTG 59.131 40.000 0.00 0.00 0.00 4.17
6229 6989 6.295011 GGGAAATGATGTAATGTTTGTGGTGA 60.295 38.462 0.00 0.00 0.00 4.02
6230 6990 7.151308 GGAAATGATGTAATGTTTGTGGTGAA 58.849 34.615 0.00 0.00 0.00 3.18
6231 6991 7.655328 GGAAATGATGTAATGTTTGTGGTGAAA 59.345 33.333 0.00 0.00 0.00 2.69
6232 6992 8.592105 AAATGATGTAATGTTTGTGGTGAAAG 57.408 30.769 0.00 0.00 0.00 2.62
6233 6993 6.707440 TGATGTAATGTTTGTGGTGAAAGT 57.293 33.333 0.00 0.00 0.00 2.66
6234 6994 7.106439 TGATGTAATGTTTGTGGTGAAAGTT 57.894 32.000 0.00 0.00 0.00 2.66
6235 6995 8.226819 TGATGTAATGTTTGTGGTGAAAGTTA 57.773 30.769 0.00 0.00 0.00 2.24
6236 6996 8.349245 TGATGTAATGTTTGTGGTGAAAGTTAG 58.651 33.333 0.00 0.00 0.00 2.34
6237 6997 7.633193 TGTAATGTTTGTGGTGAAAGTTAGT 57.367 32.000 0.00 0.00 0.00 2.24
6238 6998 8.057536 TGTAATGTTTGTGGTGAAAGTTAGTT 57.942 30.769 0.00 0.00 0.00 2.24
6239 6999 7.971168 TGTAATGTTTGTGGTGAAAGTTAGTTG 59.029 33.333 0.00 0.00 0.00 3.16
6240 7000 6.767524 ATGTTTGTGGTGAAAGTTAGTTGA 57.232 33.333 0.00 0.00 0.00 3.18
6241 7001 6.767524 TGTTTGTGGTGAAAGTTAGTTGAT 57.232 33.333 0.00 0.00 0.00 2.57
6242 7002 6.559810 TGTTTGTGGTGAAAGTTAGTTGATG 58.440 36.000 0.00 0.00 0.00 3.07
6243 7003 6.151985 TGTTTGTGGTGAAAGTTAGTTGATGT 59.848 34.615 0.00 0.00 0.00 3.06
6244 7004 7.337184 TGTTTGTGGTGAAAGTTAGTTGATGTA 59.663 33.333 0.00 0.00 0.00 2.29
6245 7005 7.867305 TTGTGGTGAAAGTTAGTTGATGTAA 57.133 32.000 0.00 0.00 0.00 2.41
6246 7006 8.458573 TTGTGGTGAAAGTTAGTTGATGTAAT 57.541 30.769 0.00 0.00 0.00 1.89
6247 7007 7.870826 TGTGGTGAAAGTTAGTTGATGTAATG 58.129 34.615 0.00 0.00 0.00 1.90
6248 7008 7.500892 TGTGGTGAAAGTTAGTTGATGTAATGT 59.499 33.333 0.00 0.00 0.00 2.71
6249 7009 8.349983 GTGGTGAAAGTTAGTTGATGTAATGTT 58.650 33.333 0.00 0.00 0.00 2.71
6250 7010 8.908903 TGGTGAAAGTTAGTTGATGTAATGTTT 58.091 29.630 0.00 0.00 0.00 2.83
6251 7011 9.180678 GGTGAAAGTTAGTTGATGTAATGTTTG 57.819 33.333 0.00 0.00 0.00 2.93
6252 7012 9.730420 GTGAAAGTTAGTTGATGTAATGTTTGT 57.270 29.630 0.00 0.00 0.00 2.83
6253 7013 9.729023 TGAAAGTTAGTTGATGTAATGTTTGTG 57.271 29.630 0.00 0.00 0.00 3.33
6254 7014 9.180678 GAAAGTTAGTTGATGTAATGTTTGTGG 57.819 33.333 0.00 0.00 0.00 4.17
6255 7015 7.817418 AGTTAGTTGATGTAATGTTTGTGGT 57.183 32.000 0.00 0.00 0.00 4.16
6256 7016 7.648142 AGTTAGTTGATGTAATGTTTGTGGTG 58.352 34.615 0.00 0.00 0.00 4.17
6257 7017 7.500892 AGTTAGTTGATGTAATGTTTGTGGTGA 59.499 33.333 0.00 0.00 0.00 4.02
6302 7062 3.826157 TGGTGAAAGAAAGAATTGGCGAT 59.174 39.130 0.00 0.00 0.00 4.58
6380 7140 2.297701 GTCCAGCTCCAACTTTTCACA 58.702 47.619 0.00 0.00 0.00 3.58
6428 7188 5.340439 AAATCTTTTCCTCGTCGGTCTAT 57.660 39.130 0.00 0.00 0.00 1.98
6473 7233 4.457466 TGGGTTTCTGAGTTTCTACCAAC 58.543 43.478 0.00 0.00 0.00 3.77
6479 7239 3.258372 TCTGAGTTTCTACCAACGAGCAT 59.742 43.478 0.00 0.00 0.00 3.79
6509 7269 5.452078 AGAGAGGATCGCTTATCTTTGAG 57.548 43.478 0.00 0.00 45.29 3.02
6510 7270 5.136828 AGAGAGGATCGCTTATCTTTGAGA 58.863 41.667 0.00 0.00 45.29 3.27
6511 7271 5.241506 AGAGAGGATCGCTTATCTTTGAGAG 59.758 44.000 0.00 0.00 45.29 3.20
6512 7272 5.136828 AGAGGATCGCTTATCTTTGAGAGA 58.863 41.667 0.00 0.00 42.67 3.10
6513 7273 5.596361 AGAGGATCGCTTATCTTTGAGAGAA 59.404 40.000 0.00 0.00 42.67 2.87
6514 7274 6.267471 AGAGGATCGCTTATCTTTGAGAGAAT 59.733 38.462 0.00 0.00 42.67 2.40
6515 7275 6.825610 AGGATCGCTTATCTTTGAGAGAATT 58.174 36.000 0.00 0.00 38.06 2.17
6516 7276 6.928492 AGGATCGCTTATCTTTGAGAGAATTC 59.072 38.462 0.00 0.00 38.06 2.17
6517 7277 6.928492 GGATCGCTTATCTTTGAGAGAATTCT 59.072 38.462 7.95 7.95 38.06 2.40
6518 7278 7.440856 GGATCGCTTATCTTTGAGAGAATTCTT 59.559 37.037 9.87 0.00 38.06 2.52
6519 7279 8.729805 ATCGCTTATCTTTGAGAGAATTCTTT 57.270 30.769 9.87 3.31 38.06 2.52
6520 7280 9.823647 ATCGCTTATCTTTGAGAGAATTCTTTA 57.176 29.630 9.87 0.00 38.06 1.85
6521 7281 9.823647 TCGCTTATCTTTGAGAGAATTCTTTAT 57.176 29.630 9.87 0.00 38.06 1.40
6547 7307 9.704098 TTTAACATCGTTTTAAAATTTGTTGCC 57.296 25.926 22.80 4.50 0.00 4.52
6548 7308 7.546778 AACATCGTTTTAAAATTTGTTGCCT 57.453 28.000 17.82 3.06 0.00 4.75
6549 7309 7.546778 ACATCGTTTTAAAATTTGTTGCCTT 57.453 28.000 3.52 0.00 0.00 4.35
6550 7310 8.649973 ACATCGTTTTAAAATTTGTTGCCTTA 57.350 26.923 3.52 0.00 0.00 2.69
6551 7311 9.267084 ACATCGTTTTAAAATTTGTTGCCTTAT 57.733 25.926 3.52 0.00 0.00 1.73
6554 7314 9.922305 TCGTTTTAAAATTTGTTGCCTTATTTG 57.078 25.926 3.52 0.00 0.00 2.32
6555 7315 9.922305 CGTTTTAAAATTTGTTGCCTTATTTGA 57.078 25.926 3.52 0.00 0.00 2.69
6559 7319 9.606631 TTAAAATTTGTTGCCTTATTTGACACT 57.393 25.926 0.00 0.00 0.00 3.55
6560 7320 7.481275 AAATTTGTTGCCTTATTTGACACTG 57.519 32.000 0.00 0.00 0.00 3.66
6561 7321 5.843673 TTTGTTGCCTTATTTGACACTGA 57.156 34.783 0.00 0.00 0.00 3.41
6562 7322 5.843673 TTGTTGCCTTATTTGACACTGAA 57.156 34.783 0.00 0.00 0.00 3.02
6563 7323 5.843673 TGTTGCCTTATTTGACACTGAAA 57.156 34.783 0.00 0.00 0.00 2.69
6564 7324 6.214191 TGTTGCCTTATTTGACACTGAAAA 57.786 33.333 0.00 0.00 0.00 2.29
6565 7325 6.634805 TGTTGCCTTATTTGACACTGAAAAA 58.365 32.000 0.00 0.00 0.00 1.94
6591 7351 9.893305 AAAATGTCTTTCTTATTTAACACCGAG 57.107 29.630 0.00 0.00 0.00 4.63
6592 7352 8.617290 AATGTCTTTCTTATTTAACACCGAGT 57.383 30.769 0.00 0.00 0.00 4.18
6593 7353 7.647907 TGTCTTTCTTATTTAACACCGAGTC 57.352 36.000 0.00 0.00 0.00 3.36
6594 7354 6.647895 TGTCTTTCTTATTTAACACCGAGTCC 59.352 38.462 0.00 0.00 0.00 3.85
6595 7355 6.647895 GTCTTTCTTATTTAACACCGAGTCCA 59.352 38.462 0.00 0.00 0.00 4.02
6596 7356 7.172019 GTCTTTCTTATTTAACACCGAGTCCAA 59.828 37.037 0.00 0.00 0.00 3.53
6597 7357 7.716123 TCTTTCTTATTTAACACCGAGTCCAAA 59.284 33.333 0.00 0.00 0.00 3.28
6598 7358 7.989416 TTCTTATTTAACACCGAGTCCAAAT 57.011 32.000 0.00 0.00 32.62 2.32
6599 7359 7.989416 TCTTATTTAACACCGAGTCCAAATT 57.011 32.000 0.00 0.00 31.25 1.82
6600 7360 8.398878 TCTTATTTAACACCGAGTCCAAATTT 57.601 30.769 0.00 0.00 31.25 1.82
6601 7361 8.852135 TCTTATTTAACACCGAGTCCAAATTTT 58.148 29.630 0.00 0.00 31.25 1.82
6604 7364 8.980143 ATTTAACACCGAGTCCAAATTTTATG 57.020 30.769 0.00 0.00 0.00 1.90
6605 7365 4.434713 ACACCGAGTCCAAATTTTATGC 57.565 40.909 0.00 0.00 0.00 3.14
6606 7366 3.192633 ACACCGAGTCCAAATTTTATGCC 59.807 43.478 0.00 0.00 0.00 4.40
6607 7367 2.758423 ACCGAGTCCAAATTTTATGCCC 59.242 45.455 0.00 0.00 0.00 5.36
6608 7368 3.023832 CCGAGTCCAAATTTTATGCCCT 58.976 45.455 0.00 0.00 0.00 5.19
6609 7369 3.447229 CCGAGTCCAAATTTTATGCCCTT 59.553 43.478 0.00 0.00 0.00 3.95
6610 7370 4.081697 CCGAGTCCAAATTTTATGCCCTTT 60.082 41.667 0.00 0.00 0.00 3.11
6611 7371 5.126384 CCGAGTCCAAATTTTATGCCCTTTA 59.874 40.000 0.00 0.00 0.00 1.85
6612 7372 6.183360 CCGAGTCCAAATTTTATGCCCTTTAT 60.183 38.462 0.00 0.00 0.00 1.40
6613 7373 6.697019 CGAGTCCAAATTTTATGCCCTTTATG 59.303 38.462 0.00 0.00 0.00 1.90
6614 7374 7.416213 CGAGTCCAAATTTTATGCCCTTTATGA 60.416 37.037 0.00 0.00 0.00 2.15
6615 7375 7.555965 AGTCCAAATTTTATGCCCTTTATGAC 58.444 34.615 0.00 0.00 0.00 3.06
6616 7376 7.180051 AGTCCAAATTTTATGCCCTTTATGACA 59.820 33.333 0.00 0.00 0.00 3.58
6617 7377 7.277760 GTCCAAATTTTATGCCCTTTATGACAC 59.722 37.037 0.00 0.00 0.00 3.67
6618 7378 7.180051 TCCAAATTTTATGCCCTTTATGACACT 59.820 33.333 0.00 0.00 0.00 3.55
6619 7379 8.474025 CCAAATTTTATGCCCTTTATGACACTA 58.526 33.333 0.00 0.00 0.00 2.74
6622 7382 8.995027 ATTTTATGCCCTTTATGACACTATCA 57.005 30.769 0.00 0.00 43.13 2.15
6623 7383 8.450578 TTTTATGCCCTTTATGACACTATCAG 57.549 34.615 0.00 0.00 41.91 2.90
6624 7384 3.808728 TGCCCTTTATGACACTATCAGC 58.191 45.455 0.00 0.00 41.91 4.26
6625 7385 3.455910 TGCCCTTTATGACACTATCAGCT 59.544 43.478 0.00 0.00 41.91 4.24
6626 7386 3.812053 GCCCTTTATGACACTATCAGCTG 59.188 47.826 7.63 7.63 41.91 4.24
6627 7387 3.812053 CCCTTTATGACACTATCAGCTGC 59.188 47.826 9.47 0.00 41.91 5.25
6628 7388 4.445453 CCTTTATGACACTATCAGCTGCA 58.555 43.478 9.47 0.00 41.91 4.41
6629 7389 5.061853 CCTTTATGACACTATCAGCTGCAT 58.938 41.667 9.47 7.39 41.91 3.96
6630 7390 5.049612 CCTTTATGACACTATCAGCTGCATG 60.050 44.000 9.47 6.81 41.91 4.06
6631 7391 3.832615 ATGACACTATCAGCTGCATGA 57.167 42.857 9.47 3.28 41.91 3.07
6632 7392 3.175109 TGACACTATCAGCTGCATGAG 57.825 47.619 9.47 5.68 31.91 2.90
6633 7393 2.762327 TGACACTATCAGCTGCATGAGA 59.238 45.455 9.47 0.00 31.91 3.27
6634 7394 3.387050 TGACACTATCAGCTGCATGAGAT 59.613 43.478 9.47 0.00 31.91 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.663334 TGTCAGCTTCTAGAGTTAGGTGA 58.337 43.478 17.00 17.00 42.26 4.02
15 16 5.347342 CATGTCAGCTTCTAGAGTTAGGTG 58.653 45.833 13.58 13.58 38.42 4.00
27 28 1.016627 TAATGCGCCATGTCAGCTTC 58.983 50.000 4.18 0.00 0.00 3.86
149 150 3.019564 CCTACAGAAAATGCCTCCAAGG 58.980 50.000 0.00 0.00 38.80 3.61
158 159 3.119708 GCAGCCACTTCCTACAGAAAATG 60.120 47.826 0.00 0.00 32.88 2.32
210 211 1.089920 GTGCGATGTCAAGCTCCAAT 58.910 50.000 0.00 0.00 0.00 3.16
262 263 1.957765 GAGGTAGAACCGCTCCACCC 61.958 65.000 0.00 0.00 44.90 4.61
294 295 3.766691 GTCGTTCCGGCAGGCCTA 61.767 66.667 3.98 0.00 37.47 3.93
306 307 0.874607 AAGCAAGCGTTCGAGTCGTT 60.875 50.000 13.12 0.00 0.00 3.85
317 318 3.615509 TTACCCCCGGAAGCAAGCG 62.616 63.158 0.73 0.00 0.00 4.68
386 388 7.233757 AGACTAGCCGGAAAAGTAAGATATCAT 59.766 37.037 5.05 0.00 0.00 2.45
396 398 1.697982 ACCAAGACTAGCCGGAAAAGT 59.302 47.619 5.05 4.19 0.00 2.66
400 402 0.252103 AGGACCAAGACTAGCCGGAA 60.252 55.000 5.05 0.00 0.00 4.30
403 405 2.076863 CAAAAGGACCAAGACTAGCCG 58.923 52.381 0.00 0.00 0.00 5.52
436 438 2.766828 AGGGGTCAGTTATTCGAAGGAG 59.233 50.000 3.35 0.00 0.00 3.69
446 448 5.131475 AGACTAAAACACAAGGGGTCAGTTA 59.869 40.000 0.00 0.00 0.00 2.24
462 464 4.756642 CACAGCATCAAGGTCAGACTAAAA 59.243 41.667 0.00 0.00 0.00 1.52
478 480 6.315642 CAGACACAAGAATAAGATCACAGCAT 59.684 38.462 0.00 0.00 0.00 3.79
516 518 0.034863 ACAAACCCTGTGTCCGTTGT 60.035 50.000 0.00 0.00 36.69 3.32
525 527 1.077357 TCGGTGCAACAAACCCTGT 60.077 52.632 0.98 0.00 39.98 4.00
547 549 4.210611 AGAGGAATCAGGAGGATCATCA 57.789 45.455 9.94 0.00 36.25 3.07
548 550 4.321899 CGAAGAGGAATCAGGAGGATCATC 60.322 50.000 0.00 0.00 36.25 2.92
549 551 3.577848 CGAAGAGGAATCAGGAGGATCAT 59.422 47.826 0.00 0.00 36.25 2.45
550 552 2.961741 CGAAGAGGAATCAGGAGGATCA 59.038 50.000 0.00 0.00 36.25 2.92
551 553 3.226777 TCGAAGAGGAATCAGGAGGATC 58.773 50.000 0.00 0.00 34.28 3.36
552 554 3.320610 TCGAAGAGGAATCAGGAGGAT 57.679 47.619 0.00 0.00 38.05 3.24
553 555 2.828661 TCGAAGAGGAATCAGGAGGA 57.171 50.000 0.00 0.00 0.00 3.71
554 556 3.383620 CATCGAAGAGGAATCAGGAGG 57.616 52.381 0.00 0.00 43.16 4.30
564 566 4.921515 TCGTTAACAAGTTCATCGAAGAGG 59.078 41.667 6.39 0.00 43.63 3.69
565 567 6.089551 ACATCGTTAACAAGTTCATCGAAGAG 59.910 38.462 6.39 8.44 43.63 2.85
566 568 5.924254 ACATCGTTAACAAGTTCATCGAAGA 59.076 36.000 6.39 0.00 45.75 2.87
567 569 6.153212 ACATCGTTAACAAGTTCATCGAAG 57.847 37.500 6.39 0.00 0.00 3.79
568 570 7.383029 AGTTACATCGTTAACAAGTTCATCGAA 59.617 33.333 6.39 0.00 0.00 3.71
569 571 6.864685 AGTTACATCGTTAACAAGTTCATCGA 59.135 34.615 6.39 0.00 0.00 3.59
570 572 7.045725 AGTTACATCGTTAACAAGTTCATCG 57.954 36.000 6.39 0.00 0.00 3.84
668 903 7.042106 AGGAGTACCTAGTAGGAGAGAAAAA 57.958 40.000 23.50 0.00 45.83 1.94
669 904 6.655376 AGGAGTACCTAGTAGGAGAGAAAA 57.345 41.667 23.50 0.00 45.83 2.29
698 933 6.183361 ACCTAGGAGAGTTGCCTAAAAGAAAA 60.183 38.462 17.98 0.00 37.54 2.29
699 934 5.309806 ACCTAGGAGAGTTGCCTAAAAGAAA 59.690 40.000 17.98 0.00 37.54 2.52
700 935 4.844655 ACCTAGGAGAGTTGCCTAAAAGAA 59.155 41.667 17.98 0.00 37.54 2.52
701 936 4.426704 ACCTAGGAGAGTTGCCTAAAAGA 58.573 43.478 17.98 0.00 37.54 2.52
702 937 4.828072 ACCTAGGAGAGTTGCCTAAAAG 57.172 45.455 17.98 0.00 37.54 2.27
703 938 5.339477 AGTACCTAGGAGAGTTGCCTAAAA 58.661 41.667 17.98 0.00 37.54 1.52
727 991 3.376935 CTCTGGCGTGCCACCTAGG 62.377 68.421 10.06 7.41 41.89 3.02
756 1020 3.046390 GAGAGTGACAAGTGTTCGAGTG 58.954 50.000 0.00 0.00 0.00 3.51
781 1049 3.138304 CGAAGGTTGGACTGTGAAATGA 58.862 45.455 0.00 0.00 0.00 2.57
856 1124 1.112113 GACAAGAGGAGGGTATGCGA 58.888 55.000 0.00 0.00 0.00 5.10
1364 1637 1.458588 ACCAAACCAAACGGGGCAT 60.459 52.632 0.00 0.00 42.91 4.40
1379 1652 1.383799 CAGCCCATTCCAAGGACCA 59.616 57.895 0.00 0.00 0.00 4.02
1383 1656 4.026052 AGAAATTACAGCCCATTCCAAGG 58.974 43.478 0.00 0.00 0.00 3.61
1469 1742 2.125673 CGCCTCACCTTGGTACCG 60.126 66.667 7.57 0.00 0.00 4.02
1505 1781 8.190122 GCCATATTATGAACAAATCACAGACAA 58.810 33.333 5.21 0.00 41.93 3.18
1513 1789 8.149647 TCCCATTTGCCATATTATGAACAAATC 58.850 33.333 21.94 2.44 41.04 2.17
1519 1795 8.970020 GTATGATCCCATTTGCCATATTATGAA 58.030 33.333 5.21 0.00 34.31 2.57
1522 1798 8.920174 CATGTATGATCCCATTTGCCATATTAT 58.080 33.333 0.00 0.00 34.31 1.28
1531 1807 4.038763 AGCAAGCATGTATGATCCCATTTG 59.961 41.667 4.33 0.00 34.31 2.32
1532 1808 4.220724 AGCAAGCATGTATGATCCCATTT 58.779 39.130 4.33 0.00 34.31 2.32
1547 1823 3.207265 TGAACCTAAACAGAGCAAGCA 57.793 42.857 0.00 0.00 0.00 3.91
1553 1829 3.190874 GCTCCGATGAACCTAAACAGAG 58.809 50.000 0.00 0.00 0.00 3.35
1557 1833 2.973945 AGTGCTCCGATGAACCTAAAC 58.026 47.619 0.00 0.00 0.00 2.01
1558 1834 3.695830 AAGTGCTCCGATGAACCTAAA 57.304 42.857 0.00 0.00 0.00 1.85
1559 1835 3.334691 CAAAGTGCTCCGATGAACCTAA 58.665 45.455 0.00 0.00 0.00 2.69
1560 1836 2.354704 CCAAAGTGCTCCGATGAACCTA 60.355 50.000 0.00 0.00 0.00 3.08
1561 1837 1.611673 CCAAAGTGCTCCGATGAACCT 60.612 52.381 0.00 0.00 0.00 3.50
1562 1838 0.804989 CCAAAGTGCTCCGATGAACC 59.195 55.000 0.00 0.00 0.00 3.62
1563 1839 1.197721 CACCAAAGTGCTCCGATGAAC 59.802 52.381 0.00 0.00 37.14 3.18
1564 1840 1.071542 TCACCAAAGTGCTCCGATGAA 59.928 47.619 0.00 0.00 44.16 2.57
1565 1841 0.684535 TCACCAAAGTGCTCCGATGA 59.315 50.000 0.00 0.00 44.16 2.92
1566 1842 0.798776 GTCACCAAAGTGCTCCGATG 59.201 55.000 0.00 0.00 44.16 3.84
1567 1843 0.687354 AGTCACCAAAGTGCTCCGAT 59.313 50.000 0.00 0.00 44.16 4.18
1568 1844 1.334160 TAGTCACCAAAGTGCTCCGA 58.666 50.000 0.00 0.00 44.16 4.55
1569 1845 2.163818 TTAGTCACCAAAGTGCTCCG 57.836 50.000 0.00 0.00 44.16 4.63
1570 1846 6.759497 ATAAATTAGTCACCAAAGTGCTCC 57.241 37.500 0.00 0.00 44.16 4.70
1617 1893 1.953559 ACATGCACGATACATCCCAC 58.046 50.000 0.00 0.00 0.00 4.61
1651 1927 3.054582 AGTGCATCAGGACATCACAGAAT 60.055 43.478 0.00 0.00 38.75 2.40
1722 1998 1.270147 ACAGCCACGAGTTTCTACACC 60.270 52.381 0.00 0.00 0.00 4.16
1739 2015 4.510711 CACAGCAGCCATTAGATAGAACAG 59.489 45.833 0.00 0.00 0.00 3.16
1804 2080 2.867624 ACAGCATGAAGTGACCATTGT 58.132 42.857 0.00 0.00 39.69 2.71
1805 2081 3.668757 CGAACAGCATGAAGTGACCATTG 60.669 47.826 0.00 0.00 39.69 2.82
1806 2082 2.485426 CGAACAGCATGAAGTGACCATT 59.515 45.455 0.00 0.00 39.69 3.16
1807 2083 2.079158 CGAACAGCATGAAGTGACCAT 58.921 47.619 0.00 0.00 39.69 3.55
1808 2084 1.511850 CGAACAGCATGAAGTGACCA 58.488 50.000 0.00 0.00 39.69 4.02
1809 2085 0.798776 CCGAACAGCATGAAGTGACC 59.201 55.000 0.00 0.00 39.69 4.02
1810 2086 1.461127 GACCGAACAGCATGAAGTGAC 59.539 52.381 0.00 0.00 39.69 3.67
1814 2090 3.189080 TCATTTGACCGAACAGCATGAAG 59.811 43.478 0.00 0.00 39.69 3.02
2021 2297 9.752961 CAACCATGAAATGCATAAGATAATGAA 57.247 29.630 0.00 0.00 44.97 2.57
2042 2319 0.455005 CACACACACACATGCAACCA 59.545 50.000 0.00 0.00 0.00 3.67
2051 2328 4.364860 TCTATACACACACACACACACAC 58.635 43.478 0.00 0.00 0.00 3.82
2083 2366 7.319646 AGTGTAAACAAATCAAGTTTTCAGCA 58.680 30.769 0.00 0.00 37.08 4.41
2254 2537 1.614903 CCAATTTCTGGTGCTCTGCAA 59.385 47.619 0.00 0.00 41.47 4.08
2283 2567 2.462889 CAACAATGTGAAACGCTGCTT 58.537 42.857 0.00 0.00 42.39 3.91
2291 2575 7.671819 TGGGTAATATTCTCCAACAATGTGAAA 59.328 33.333 7.09 0.00 0.00 2.69
2401 2687 1.070445 GGAGAGATCTGTGGCATGGAG 59.930 57.143 0.00 0.00 0.00 3.86
2452 2739 2.933287 TGGGTGTCCTCGGCCATT 60.933 61.111 2.24 0.00 0.00 3.16
2465 2752 1.344953 TTGGTGCTGACACTCTGGGT 61.345 55.000 0.00 0.00 46.57 4.51
2603 2914 0.822164 GGCGGAGGAAACTACTGCTA 59.178 55.000 0.00 0.00 44.43 3.49
2744 3058 0.869880 CTCGTGTCGACTGTTGTGCA 60.870 55.000 17.92 0.00 0.00 4.57
2775 3089 0.326595 TCATGGCCGCTTCTTAACCA 59.673 50.000 0.00 0.00 34.28 3.67
2969 3298 1.691219 GCATGAGAAACCCCAGGGA 59.309 57.895 7.25 0.00 38.96 4.20
2977 3306 0.744771 GTCCTCCCCGCATGAGAAAC 60.745 60.000 0.00 0.00 31.26 2.78
3169 3498 1.130561 GCTGACAGCCCGACAAAATAC 59.869 52.381 17.01 0.00 34.48 1.89
3483 4015 7.271511 CAGTAAGAGCCTTAAGAGATTCACAT 58.728 38.462 3.36 0.00 0.00 3.21
3487 4019 5.665459 TGCAGTAAGAGCCTTAAGAGATTC 58.335 41.667 3.36 0.00 0.00 2.52
3624 4156 3.256704 TGTCCTGGATTCCTGGTAACTT 58.743 45.455 23.58 0.00 42.31 2.66
3880 4415 4.624364 CGATTAGGGTGTGTTTGGGTGATA 60.624 45.833 0.00 0.00 0.00 2.15
3960 4495 4.927267 ACCTCTGTAATTGGGTCATCAA 57.073 40.909 0.00 0.00 0.00 2.57
4031 4566 1.335935 ATATTTGTGTTTGTGCGCGC 58.664 45.000 27.26 27.26 0.00 6.86
4032 4567 3.233578 AGAATATTTGTGTTTGTGCGCG 58.766 40.909 0.00 0.00 0.00 6.86
4033 4568 4.262976 GCTAGAATATTTGTGTTTGTGCGC 59.737 41.667 0.00 0.00 0.00 6.09
4035 4570 5.627172 TCGCTAGAATATTTGTGTTTGTGC 58.373 37.500 0.00 0.00 0.00 4.57
4040 4575 7.119116 TGTCATGTTCGCTAGAATATTTGTGTT 59.881 33.333 0.00 0.00 36.28 3.32
4161 4698 5.489249 GAAAAGAAACGAGTTAGGGGAGAT 58.511 41.667 0.00 0.00 0.00 2.75
4175 4712 4.483476 TCTTGCGCTAAGGAAAAGAAAC 57.517 40.909 9.73 0.00 37.01 2.78
4238 4775 3.746492 CCTTCAACTAAACCAGTCCTTCG 59.254 47.826 0.00 0.00 36.04 3.79
4240 4777 3.720002 TCCCTTCAACTAAACCAGTCCTT 59.280 43.478 0.00 0.00 36.04 3.36
4241 4778 3.072622 GTCCCTTCAACTAAACCAGTCCT 59.927 47.826 0.00 0.00 36.04 3.85
4242 4779 3.181448 TGTCCCTTCAACTAAACCAGTCC 60.181 47.826 0.00 0.00 36.04 3.85
4243 4780 3.813724 GTGTCCCTTCAACTAAACCAGTC 59.186 47.826 0.00 0.00 36.04 3.51
4244 4781 3.458487 AGTGTCCCTTCAACTAAACCAGT 59.542 43.478 0.00 0.00 40.05 4.00
4245 4782 4.086706 AGTGTCCCTTCAACTAAACCAG 57.913 45.455 0.00 0.00 0.00 4.00
4246 4783 4.204012 CAAGTGTCCCTTCAACTAAACCA 58.796 43.478 0.00 0.00 0.00 3.67
4247 4784 3.568430 CCAAGTGTCCCTTCAACTAAACC 59.432 47.826 0.00 0.00 0.00 3.27
4248 4785 3.568430 CCCAAGTGTCCCTTCAACTAAAC 59.432 47.826 0.00 0.00 0.00 2.01
4249 4786 3.435890 CCCCAAGTGTCCCTTCAACTAAA 60.436 47.826 0.00 0.00 0.00 1.85
4250 4787 2.107552 CCCCAAGTGTCCCTTCAACTAA 59.892 50.000 0.00 0.00 0.00 2.24
4251 4788 1.702957 CCCCAAGTGTCCCTTCAACTA 59.297 52.381 0.00 0.00 0.00 2.24
4252 4789 0.478507 CCCCAAGTGTCCCTTCAACT 59.521 55.000 0.00 0.00 0.00 3.16
4253 4790 0.539669 CCCCCAAGTGTCCCTTCAAC 60.540 60.000 0.00 0.00 0.00 3.18
4254 4791 1.850549 CCCCCAAGTGTCCCTTCAA 59.149 57.895 0.00 0.00 0.00 2.69
4255 4792 3.587840 CCCCCAAGTGTCCCTTCA 58.412 61.111 0.00 0.00 0.00 3.02
4277 4814 4.802051 TGAGCGCTCATTGCCCCC 62.802 66.667 35.30 8.09 38.78 5.40
4278 4815 3.207669 CTGAGCGCTCATTGCCCC 61.208 66.667 38.11 11.18 39.13 5.80
4279 4816 2.124983 TCTGAGCGCTCATTGCCC 60.125 61.111 38.11 11.99 39.13 5.36
4280 4817 1.152989 CTCTCTGAGCGCTCATTGCC 61.153 60.000 38.11 12.79 39.13 4.52
4281 4818 0.179116 TCTCTCTGAGCGCTCATTGC 60.179 55.000 38.11 13.60 39.13 3.56
4364 5120 2.956964 CGCAGCCTCCGTTCGATC 60.957 66.667 0.00 0.00 0.00 3.69
4424 5180 7.318141 ACAAATAAATCACAGAAAGATGCAGG 58.682 34.615 0.00 0.00 0.00 4.85
4486 5243 2.560542 GGGTACATGGTCATGCAAACAA 59.439 45.455 10.53 0.00 42.39 2.83
4535 5292 5.398236 TCTTCAATGGGGGTTTACAAATCA 58.602 37.500 0.00 0.00 0.00 2.57
4825 5583 0.737715 AAGGAATCTGCGACACGAGC 60.738 55.000 0.00 0.00 0.00 5.03
5031 5789 2.486370 CCGCATACCATAACCACCATGA 60.486 50.000 0.00 0.00 0.00 3.07
5146 5905 6.446781 AATGAACAATATGGCAGAGAACTG 57.553 37.500 0.00 0.00 45.91 3.16
5172 5931 3.327757 TCCTGCAGGTACAGAATCAAAGT 59.672 43.478 31.58 0.00 40.25 2.66
5201 5960 3.914426 AAATAGGACTCAATGACGGCT 57.086 42.857 0.00 0.00 0.00 5.52
5510 6269 6.152154 ACAAAACCTAATACACCAACATAGCC 59.848 38.462 0.00 0.00 0.00 3.93
5542 6301 3.674281 TGCATAAATCAAGCAGCAAAACG 59.326 39.130 0.00 0.00 33.75 3.60
5822 6582 8.613060 TCTCTTATTTGATGATGCTCCATAAC 57.387 34.615 0.00 0.00 0.00 1.89
5969 6729 2.214376 TTAACAAGGCATGGGTGAGG 57.786 50.000 0.00 0.00 0.00 3.86
5995 6755 3.940221 AGGGTAGAGAGCGCTATTATACG 59.060 47.826 11.50 0.00 0.00 3.06
6004 6764 1.734748 GGTACAGGGTAGAGAGCGC 59.265 63.158 0.00 0.00 0.00 5.92
6006 6766 1.472188 AACGGTACAGGGTAGAGAGC 58.528 55.000 0.00 0.00 0.00 4.09
6055 6815 3.782656 TCTTAAACCAAGGGTCAGTCC 57.217 47.619 0.00 0.00 33.12 3.85
6069 6829 7.712639 GTGCTCATTCATACTCTCCATCTTAAA 59.287 37.037 0.00 0.00 0.00 1.52
6118 6878 8.019656 TGTAAGACAGGATATCTAAAGGGAAC 57.980 38.462 2.05 0.00 0.00 3.62
6145 6905 6.430925 ACGTTACAATTTACTAACCTTTCCCC 59.569 38.462 0.00 0.00 0.00 4.81
6152 6912 7.149303 GCAAACGAACGTTACAATTTACTAACC 60.149 37.037 12.77 0.00 37.35 2.85
6159 6919 3.037324 CCGCAAACGAACGTTACAATTT 58.963 40.909 12.77 0.00 43.93 1.82
6178 6938 2.988493 TCGACAATTCCTTCGTTTACCG 59.012 45.455 0.00 0.00 36.60 4.02
6189 6949 2.607631 TTCCCGGTATCGACAATTCC 57.392 50.000 0.00 0.00 39.00 3.01
6201 6961 4.770010 ACAAACATTACATCATTTCCCGGT 59.230 37.500 0.00 0.00 0.00 5.28
6209 6969 7.288810 ACTTTCACCACAAACATTACATCAT 57.711 32.000 0.00 0.00 0.00 2.45
6210 6970 6.707440 ACTTTCACCACAAACATTACATCA 57.293 33.333 0.00 0.00 0.00 3.07
6211 6971 8.349983 ACTAACTTTCACCACAAACATTACATC 58.650 33.333 0.00 0.00 0.00 3.06
6212 6972 8.232913 ACTAACTTTCACCACAAACATTACAT 57.767 30.769 0.00 0.00 0.00 2.29
6213 6973 7.633193 ACTAACTTTCACCACAAACATTACA 57.367 32.000 0.00 0.00 0.00 2.41
6214 6974 8.185505 TCAACTAACTTTCACCACAAACATTAC 58.814 33.333 0.00 0.00 0.00 1.89
6215 6975 8.282455 TCAACTAACTTTCACCACAAACATTA 57.718 30.769 0.00 0.00 0.00 1.90
6216 6976 7.164230 TCAACTAACTTTCACCACAAACATT 57.836 32.000 0.00 0.00 0.00 2.71
6217 6977 6.767524 TCAACTAACTTTCACCACAAACAT 57.232 33.333 0.00 0.00 0.00 2.71
6218 6978 6.151985 ACATCAACTAACTTTCACCACAAACA 59.848 34.615 0.00 0.00 0.00 2.83
6219 6979 6.560711 ACATCAACTAACTTTCACCACAAAC 58.439 36.000 0.00 0.00 0.00 2.93
6220 6980 6.767524 ACATCAACTAACTTTCACCACAAA 57.232 33.333 0.00 0.00 0.00 2.83
6221 6981 7.867305 TTACATCAACTAACTTTCACCACAA 57.133 32.000 0.00 0.00 0.00 3.33
6222 6982 7.500892 ACATTACATCAACTAACTTTCACCACA 59.499 33.333 0.00 0.00 0.00 4.17
6223 6983 7.871853 ACATTACATCAACTAACTTTCACCAC 58.128 34.615 0.00 0.00 0.00 4.16
6224 6984 8.458573 AACATTACATCAACTAACTTTCACCA 57.541 30.769 0.00 0.00 0.00 4.17
6225 6985 9.180678 CAAACATTACATCAACTAACTTTCACC 57.819 33.333 0.00 0.00 0.00 4.02
6226 6986 9.730420 ACAAACATTACATCAACTAACTTTCAC 57.270 29.630 0.00 0.00 0.00 3.18
6227 6987 9.729023 CACAAACATTACATCAACTAACTTTCA 57.271 29.630 0.00 0.00 0.00 2.69
6228 6988 9.180678 CCACAAACATTACATCAACTAACTTTC 57.819 33.333 0.00 0.00 0.00 2.62
6229 6989 8.691797 ACCACAAACATTACATCAACTAACTTT 58.308 29.630 0.00 0.00 0.00 2.66
6230 6990 8.134895 CACCACAAACATTACATCAACTAACTT 58.865 33.333 0.00 0.00 0.00 2.66
6231 6991 7.500892 TCACCACAAACATTACATCAACTAACT 59.499 33.333 0.00 0.00 0.00 2.24
6232 6992 7.644490 TCACCACAAACATTACATCAACTAAC 58.356 34.615 0.00 0.00 0.00 2.34
6233 6993 7.809546 TCACCACAAACATTACATCAACTAA 57.190 32.000 0.00 0.00 0.00 2.24
6234 6994 7.809546 TTCACCACAAACATTACATCAACTA 57.190 32.000 0.00 0.00 0.00 2.24
6235 6995 6.707440 TTCACCACAAACATTACATCAACT 57.293 33.333 0.00 0.00 0.00 3.16
6236 6996 6.978080 ACTTTCACCACAAACATTACATCAAC 59.022 34.615 0.00 0.00 0.00 3.18
6237 6997 7.106439 ACTTTCACCACAAACATTACATCAA 57.894 32.000 0.00 0.00 0.00 2.57
6238 6998 6.707440 ACTTTCACCACAAACATTACATCA 57.293 33.333 0.00 0.00 0.00 3.07
6239 6999 8.349983 ACTAACTTTCACCACAAACATTACATC 58.650 33.333 0.00 0.00 0.00 3.06
6240 7000 8.232913 ACTAACTTTCACCACAAACATTACAT 57.767 30.769 0.00 0.00 0.00 2.29
6241 7001 7.633193 ACTAACTTTCACCACAAACATTACA 57.367 32.000 0.00 0.00 0.00 2.41
6242 7002 8.185505 TCAACTAACTTTCACCACAAACATTAC 58.814 33.333 0.00 0.00 0.00 1.89
6243 7003 8.282455 TCAACTAACTTTCACCACAAACATTA 57.718 30.769 0.00 0.00 0.00 1.90
6244 7004 7.164230 TCAACTAACTTTCACCACAAACATT 57.836 32.000 0.00 0.00 0.00 2.71
6245 7005 6.767524 TCAACTAACTTTCACCACAAACAT 57.232 33.333 0.00 0.00 0.00 2.71
6246 7006 6.151985 ACATCAACTAACTTTCACCACAAACA 59.848 34.615 0.00 0.00 0.00 2.83
6247 7007 6.560711 ACATCAACTAACTTTCACCACAAAC 58.439 36.000 0.00 0.00 0.00 2.93
6248 7008 6.767524 ACATCAACTAACTTTCACCACAAA 57.232 33.333 0.00 0.00 0.00 2.83
6249 7009 7.867305 TTACATCAACTAACTTTCACCACAA 57.133 32.000 0.00 0.00 0.00 3.33
6250 7010 7.500892 ACATTACATCAACTAACTTTCACCACA 59.499 33.333 0.00 0.00 0.00 4.17
6251 7011 7.871853 ACATTACATCAACTAACTTTCACCAC 58.128 34.615 0.00 0.00 0.00 4.16
6252 7012 8.458573 AACATTACATCAACTAACTTTCACCA 57.541 30.769 0.00 0.00 0.00 4.17
6253 7013 9.180678 CAAACATTACATCAACTAACTTTCACC 57.819 33.333 0.00 0.00 0.00 4.02
6254 7014 9.730420 ACAAACATTACATCAACTAACTTTCAC 57.270 29.630 0.00 0.00 0.00 3.18
6255 7015 9.729023 CACAAACATTACATCAACTAACTTTCA 57.271 29.630 0.00 0.00 0.00 2.69
6256 7016 9.180678 CCACAAACATTACATCAACTAACTTTC 57.819 33.333 0.00 0.00 0.00 2.62
6257 7017 8.691797 ACCACAAACATTACATCAACTAACTTT 58.308 29.630 0.00 0.00 0.00 2.66
6302 7062 3.181507 GCAAATCTCGCACTGCAAAGATA 60.182 43.478 13.61 0.00 32.16 1.98
6380 7140 3.525537 CCGAGAGTTCACAGCATATTGT 58.474 45.455 0.00 0.00 0.00 2.71
6408 7168 3.952323 TGATAGACCGACGAGGAAAAGAT 59.048 43.478 8.56 0.00 45.00 2.40
6428 7188 1.618487 TGCCATGCAACACATCTTGA 58.382 45.000 0.00 0.00 36.64 3.02
6473 7233 1.339610 CCTCTCTTCCAGGTATGCTCG 59.660 57.143 0.00 0.00 0.00 5.03
6479 7239 1.215673 AGCGATCCTCTCTTCCAGGTA 59.784 52.381 0.00 0.00 32.20 3.08
6521 7281 9.704098 GGCAACAAATTTTAAAACGATGTTAAA 57.296 25.926 19.26 0.00 0.00 1.52
6522 7282 9.099454 AGGCAACAAATTTTAAAACGATGTTAA 57.901 25.926 19.26 0.00 41.41 2.01
6523 7283 8.649973 AGGCAACAAATTTTAAAACGATGTTA 57.350 26.923 19.26 0.00 41.41 2.41
6524 7284 7.546778 AGGCAACAAATTTTAAAACGATGTT 57.453 28.000 16.22 16.22 41.41 2.71
6525 7285 7.546778 AAGGCAACAAATTTTAAAACGATGT 57.453 28.000 1.97 6.09 41.41 3.06
6528 7288 9.922305 CAAATAAGGCAACAAATTTTAAAACGA 57.078 25.926 1.97 0.00 41.41 3.85
6529 7289 9.922305 TCAAATAAGGCAACAAATTTTAAAACG 57.078 25.926 1.97 0.00 41.41 3.60
6533 7293 9.606631 AGTGTCAAATAAGGCAACAAATTTTAA 57.393 25.926 0.00 0.00 41.41 1.52
6534 7294 9.039870 CAGTGTCAAATAAGGCAACAAATTTTA 57.960 29.630 0.00 0.00 41.41 1.52
6535 7295 7.768120 TCAGTGTCAAATAAGGCAACAAATTTT 59.232 29.630 0.00 0.00 41.41 1.82
6536 7296 7.271511 TCAGTGTCAAATAAGGCAACAAATTT 58.728 30.769 0.00 0.00 41.41 1.82
6537 7297 6.815089 TCAGTGTCAAATAAGGCAACAAATT 58.185 32.000 0.00 0.00 41.41 1.82
6538 7298 6.403866 TCAGTGTCAAATAAGGCAACAAAT 57.596 33.333 0.00 0.00 41.41 2.32
6539 7299 5.843673 TCAGTGTCAAATAAGGCAACAAA 57.156 34.783 0.00 0.00 41.41 2.83
6540 7300 5.843673 TTCAGTGTCAAATAAGGCAACAA 57.156 34.783 0.00 0.00 41.41 2.83
6541 7301 5.843673 TTTCAGTGTCAAATAAGGCAACA 57.156 34.783 0.00 0.00 41.41 3.33
6565 7325 9.893305 CTCGGTGTTAAATAAGAAAGACATTTT 57.107 29.630 0.00 0.00 0.00 1.82
6566 7326 9.063615 ACTCGGTGTTAAATAAGAAAGACATTT 57.936 29.630 0.00 0.00 0.00 2.32
6567 7327 8.617290 ACTCGGTGTTAAATAAGAAAGACATT 57.383 30.769 0.00 0.00 0.00 2.71
6568 7328 7.333672 GGACTCGGTGTTAAATAAGAAAGACAT 59.666 37.037 0.00 0.00 0.00 3.06
6569 7329 6.647895 GGACTCGGTGTTAAATAAGAAAGACA 59.352 38.462 0.00 0.00 0.00 3.41
6570 7330 6.647895 TGGACTCGGTGTTAAATAAGAAAGAC 59.352 38.462 0.00 0.00 0.00 3.01
6571 7331 6.761312 TGGACTCGGTGTTAAATAAGAAAGA 58.239 36.000 0.00 0.00 0.00 2.52
6572 7332 7.429636 TTGGACTCGGTGTTAAATAAGAAAG 57.570 36.000 0.00 0.00 0.00 2.62
6573 7333 7.804843 TTTGGACTCGGTGTTAAATAAGAAA 57.195 32.000 0.00 0.00 0.00 2.52
6574 7334 7.989416 ATTTGGACTCGGTGTTAAATAAGAA 57.011 32.000 5.26 0.00 29.89 2.52
6575 7335 7.989416 AATTTGGACTCGGTGTTAAATAAGA 57.011 32.000 6.73 0.00 30.78 2.10
6579 7339 7.544217 GCATAAAATTTGGACTCGGTGTTAAAT 59.456 33.333 0.00 0.00 31.61 1.40
6580 7340 6.864165 GCATAAAATTTGGACTCGGTGTTAAA 59.136 34.615 0.00 0.00 0.00 1.52
6581 7341 6.383415 GCATAAAATTTGGACTCGGTGTTAA 58.617 36.000 0.00 0.00 0.00 2.01
6582 7342 5.106078 GGCATAAAATTTGGACTCGGTGTTA 60.106 40.000 0.00 0.00 0.00 2.41
6583 7343 4.321675 GGCATAAAATTTGGACTCGGTGTT 60.322 41.667 0.00 0.00 0.00 3.32
6584 7344 3.192633 GGCATAAAATTTGGACTCGGTGT 59.807 43.478 0.00 0.00 0.00 4.16
6585 7345 3.428862 GGGCATAAAATTTGGACTCGGTG 60.429 47.826 0.00 0.00 0.00 4.94
6586 7346 2.758423 GGGCATAAAATTTGGACTCGGT 59.242 45.455 0.00 0.00 0.00 4.69
6587 7347 3.023832 AGGGCATAAAATTTGGACTCGG 58.976 45.455 0.00 0.00 0.00 4.63
6588 7348 4.718940 AAGGGCATAAAATTTGGACTCG 57.281 40.909 0.00 0.00 0.00 4.18
6589 7349 7.706607 GTCATAAAGGGCATAAAATTTGGACTC 59.293 37.037 0.00 0.00 0.00 3.36
6590 7350 7.180051 TGTCATAAAGGGCATAAAATTTGGACT 59.820 33.333 0.00 0.00 0.00 3.85
6591 7351 7.277760 GTGTCATAAAGGGCATAAAATTTGGAC 59.722 37.037 0.00 0.00 0.00 4.02
6592 7352 7.180051 AGTGTCATAAAGGGCATAAAATTTGGA 59.820 33.333 0.00 0.00 0.00 3.53
6593 7353 7.330262 AGTGTCATAAAGGGCATAAAATTTGG 58.670 34.615 0.00 0.00 0.00 3.28
6596 7356 9.420118 TGATAGTGTCATAAAGGGCATAAAATT 57.580 29.630 0.00 0.00 0.00 1.82
6597 7357 8.995027 TGATAGTGTCATAAAGGGCATAAAAT 57.005 30.769 0.00 0.00 0.00 1.82
6598 7358 7.013274 GCTGATAGTGTCATAAAGGGCATAAAA 59.987 37.037 0.00 0.00 35.97 1.52
6599 7359 6.486657 GCTGATAGTGTCATAAAGGGCATAAA 59.513 38.462 0.00 0.00 35.97 1.40
6600 7360 5.997746 GCTGATAGTGTCATAAAGGGCATAA 59.002 40.000 0.00 0.00 35.97 1.90
6601 7361 5.307976 AGCTGATAGTGTCATAAAGGGCATA 59.692 40.000 0.00 0.00 35.97 3.14
6602 7362 4.103785 AGCTGATAGTGTCATAAAGGGCAT 59.896 41.667 0.00 0.00 35.97 4.40
6603 7363 3.455910 AGCTGATAGTGTCATAAAGGGCA 59.544 43.478 0.00 0.00 35.97 5.36
6604 7364 3.812053 CAGCTGATAGTGTCATAAAGGGC 59.188 47.826 8.42 0.00 35.97 5.19
6605 7365 3.812053 GCAGCTGATAGTGTCATAAAGGG 59.188 47.826 20.43 0.00 35.97 3.95
6606 7366 4.445453 TGCAGCTGATAGTGTCATAAAGG 58.555 43.478 20.43 0.00 35.97 3.11
6607 7367 5.756833 TCATGCAGCTGATAGTGTCATAAAG 59.243 40.000 20.43 0.00 35.97 1.85
6608 7368 5.673514 TCATGCAGCTGATAGTGTCATAAA 58.326 37.500 20.43 0.00 35.97 1.40
6609 7369 5.069516 TCTCATGCAGCTGATAGTGTCATAA 59.930 40.000 20.43 0.00 35.97 1.90
6610 7370 4.586001 TCTCATGCAGCTGATAGTGTCATA 59.414 41.667 20.43 0.00 35.97 2.15
6611 7371 3.387050 TCTCATGCAGCTGATAGTGTCAT 59.613 43.478 20.43 6.40 35.97 3.06
6612 7372 2.762327 TCTCATGCAGCTGATAGTGTCA 59.238 45.455 20.43 3.86 35.05 3.58
6613 7373 3.449528 TCTCATGCAGCTGATAGTGTC 57.550 47.619 20.43 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.