Multiple sequence alignment - TraesCS3A01G218300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G218300 chr3A 100.000 4817 0 0 1 4817 400768019 400763203 0.000000e+00 8896
1 TraesCS3A01G218300 chr3B 97.348 2866 72 3 949 3812 396718262 396721125 0.000000e+00 4868
2 TraesCS3A01G218300 chr3B 92.061 781 41 10 4047 4817 396721336 396722105 0.000000e+00 1079
3 TraesCS3A01G218300 chr3B 96.026 151 6 0 3817 3967 396721185 396721335 3.720000e-61 246
4 TraesCS3A01G218300 chr3D 95.642 1790 53 12 2042 3815 322709961 322711741 0.000000e+00 2850
5 TraesCS3A01G218300 chr3D 95.043 1170 32 10 876 2045 322708737 322709880 0.000000e+00 1816
6 TraesCS3A01G218300 chr3D 93.182 704 43 5 1 703 541716291 541716990 0.000000e+00 1029
7 TraesCS3A01G218300 chr3D 88.073 872 56 12 10 857 131045753 131044906 0.000000e+00 990
8 TraesCS3A01G218300 chr1D 91.078 863 56 14 1 857 482075918 482075071 0.000000e+00 1147
9 TraesCS3A01G218300 chr1D 90.125 881 61 7 1 857 189800992 189801870 0.000000e+00 1122
10 TraesCS3A01G218300 chr1D 89.897 871 72 8 1 857 419474301 419475169 0.000000e+00 1107
11 TraesCS3A01G218300 chr1D 87.372 879 83 18 1 855 491691486 491692360 0.000000e+00 983
12 TraesCS3A01G218300 chr1D 84.091 176 25 3 685 857 14713247 14713422 2.980000e-37 167
13 TraesCS3A01G218300 chr7D 90.158 884 59 5 1 857 136241096 136241978 0.000000e+00 1125
14 TraesCS3A01G218300 chr7D 89.886 880 63 13 1 857 126810797 126809921 0.000000e+00 1109
15 TraesCS3A01G218300 chr7D 86.976 883 79 23 1 857 10958778 10959650 0.000000e+00 961
16 TraesCS3A01G218300 chr7D 85.471 881 93 21 1 857 548705412 548704543 0.000000e+00 885
17 TraesCS3A01G218300 chr7D 85.432 659 67 18 213 856 528871474 528872118 0.000000e+00 658
18 TraesCS3A01G218300 chr5D 90.023 882 58 11 1 857 446485345 446484469 0.000000e+00 1114
19 TraesCS3A01G218300 chr5D 89.350 892 56 19 1 857 15481277 15480390 0.000000e+00 1085
20 TraesCS3A01G218300 chr5D 96.403 139 5 0 4679 4817 110870725 110870587 3.750000e-56 230
21 TraesCS3A01G218300 chr7A 89.528 869 56 13 1 836 701688302 701689168 0.000000e+00 1068
22 TraesCS3A01G218300 chr7A 87.882 883 75 20 1 857 510472557 510471681 0.000000e+00 1009
23 TraesCS3A01G218300 chr5A 89.538 822 62 9 1 800 487767571 487766752 0.000000e+00 1020
24 TraesCS3A01G218300 chr6D 82.703 185 20 4 685 857 43472541 43472357 2.320000e-33 154
25 TraesCS3A01G218300 chr2B 79.897 194 31 7 4627 4817 4475709 4475521 8.410000e-28 135
26 TraesCS3A01G218300 chr4D 87.850 107 11 1 753 857 488239457 488239563 1.820000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G218300 chr3A 400763203 400768019 4816 True 8896.000000 8896 100.0000 1 4817 1 chr3A.!!$R1 4816
1 TraesCS3A01G218300 chr3B 396718262 396722105 3843 False 2064.333333 4868 95.1450 949 4817 3 chr3B.!!$F1 3868
2 TraesCS3A01G218300 chr3D 322708737 322711741 3004 False 2333.000000 2850 95.3425 876 3815 2 chr3D.!!$F2 2939
3 TraesCS3A01G218300 chr3D 541716291 541716990 699 False 1029.000000 1029 93.1820 1 703 1 chr3D.!!$F1 702
4 TraesCS3A01G218300 chr3D 131044906 131045753 847 True 990.000000 990 88.0730 10 857 1 chr3D.!!$R1 847
5 TraesCS3A01G218300 chr1D 482075071 482075918 847 True 1147.000000 1147 91.0780 1 857 1 chr1D.!!$R1 856
6 TraesCS3A01G218300 chr1D 189800992 189801870 878 False 1122.000000 1122 90.1250 1 857 1 chr1D.!!$F2 856
7 TraesCS3A01G218300 chr1D 419474301 419475169 868 False 1107.000000 1107 89.8970 1 857 1 chr1D.!!$F3 856
8 TraesCS3A01G218300 chr1D 491691486 491692360 874 False 983.000000 983 87.3720 1 855 1 chr1D.!!$F4 854
9 TraesCS3A01G218300 chr7D 136241096 136241978 882 False 1125.000000 1125 90.1580 1 857 1 chr7D.!!$F2 856
10 TraesCS3A01G218300 chr7D 126809921 126810797 876 True 1109.000000 1109 89.8860 1 857 1 chr7D.!!$R1 856
11 TraesCS3A01G218300 chr7D 10958778 10959650 872 False 961.000000 961 86.9760 1 857 1 chr7D.!!$F1 856
12 TraesCS3A01G218300 chr7D 548704543 548705412 869 True 885.000000 885 85.4710 1 857 1 chr7D.!!$R2 856
13 TraesCS3A01G218300 chr7D 528871474 528872118 644 False 658.000000 658 85.4320 213 856 1 chr7D.!!$F3 643
14 TraesCS3A01G218300 chr5D 446484469 446485345 876 True 1114.000000 1114 90.0230 1 857 1 chr5D.!!$R3 856
15 TraesCS3A01G218300 chr5D 15480390 15481277 887 True 1085.000000 1085 89.3500 1 857 1 chr5D.!!$R1 856
16 TraesCS3A01G218300 chr7A 701688302 701689168 866 False 1068.000000 1068 89.5280 1 836 1 chr7A.!!$F1 835
17 TraesCS3A01G218300 chr7A 510471681 510472557 876 True 1009.000000 1009 87.8820 1 857 1 chr7A.!!$R1 856
18 TraesCS3A01G218300 chr5A 487766752 487767571 819 True 1020.000000 1020 89.5380 1 800 1 chr5A.!!$R1 799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
896 984 0.249699 ACATGTCGGACACGCTTGAA 60.250 50.000 13.92 0.00 40.69 2.69 F
936 1024 0.745486 ACGGCCCGTTTATAACAGCC 60.745 55.000 1.02 9.42 43.47 4.85 F
1556 1644 1.084370 GCTGGTTCCGGATGTTCTCG 61.084 60.000 4.15 0.00 0.00 4.04 F
1928 2016 2.000447 GTGTCTGACCGTTCCATAAGC 59.000 52.381 5.17 0.00 0.00 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2088 2260 1.228552 ACGCCCTGTGCTGGAAATT 60.229 52.632 0.00 0.00 38.05 1.82 R
2803 2977 1.412343 ACAAAAATCAGGGTGGTGCAC 59.588 47.619 8.80 8.80 0.00 4.57 R
3207 3382 2.260869 GCATGTCACCGGCAACACT 61.261 57.895 11.36 0.02 0.00 3.55 R
3915 4161 0.900647 CTCGGTGTCCCTCCAAGAGT 60.901 60.000 0.00 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 0.400213 AACTTCGAGGTCAATGGGCA 59.600 50.000 0.00 0.00 0.00 5.36
72 73 1.452651 CGAGGTCAATGGGCAGCAT 60.453 57.895 0.00 0.00 0.00 3.79
215 216 2.423898 GGAAGGATGTCGAGCGGGA 61.424 63.158 0.00 0.00 0.00 5.14
277 278 0.756294 TGCTCAGACCTGGTCGAAAA 59.244 50.000 20.49 9.24 37.67 2.29
408 409 2.565391 TCTAGCCGAAGTTGATCACCAA 59.435 45.455 0.00 0.00 0.00 3.67
434 435 1.272807 GCAACCTGGACTACCTACCA 58.727 55.000 0.00 0.00 37.04 3.25
448 449 2.764010 ACCTACCACAATATGCGTCAGA 59.236 45.455 0.00 0.00 0.00 3.27
472 473 1.961277 CCGAGACCCACAAGTGCAC 60.961 63.158 9.40 9.40 0.00 4.57
477 478 1.577328 GACCCACAAGTGCACCATCG 61.577 60.000 14.63 1.77 0.00 3.84
551 552 3.551890 GCTCGACGTGTGATGAAATATGT 59.448 43.478 0.00 0.00 0.00 2.29
690 730 1.070786 AACACCGAACCACGCTGAT 59.929 52.632 0.00 0.00 41.07 2.90
691 731 0.319083 AACACCGAACCACGCTGATA 59.681 50.000 0.00 0.00 41.07 2.15
692 732 0.535335 ACACCGAACCACGCTGATAT 59.465 50.000 0.00 0.00 41.07 1.63
693 733 1.209128 CACCGAACCACGCTGATATC 58.791 55.000 0.00 0.00 41.07 1.63
838 926 1.002792 GGCGATTTTTATGTCTCCGGC 60.003 52.381 0.00 0.00 0.00 6.13
895 983 0.599060 TACATGTCGGACACGCTTGA 59.401 50.000 13.92 0.00 40.69 3.02
896 984 0.249699 ACATGTCGGACACGCTTGAA 60.250 50.000 13.92 0.00 40.69 2.69
907 995 4.133796 GCTTGAACATGGGCCGGC 62.134 66.667 21.18 21.18 0.00 6.13
935 1023 2.771435 ACGGCCCGTTTATAACAGC 58.229 52.632 1.02 0.00 36.35 4.40
936 1024 0.745486 ACGGCCCGTTTATAACAGCC 60.745 55.000 1.02 9.42 43.47 4.85
937 1025 2.019337 GGCCCGTTTATAACAGCCG 58.981 57.895 0.00 0.00 39.67 5.52
938 1026 1.354155 GCCCGTTTATAACAGCCGC 59.646 57.895 0.00 0.00 0.00 6.53
939 1027 1.370587 GCCCGTTTATAACAGCCGCA 61.371 55.000 0.00 0.00 0.00 5.69
940 1028 1.088306 CCCGTTTATAACAGCCGCAA 58.912 50.000 0.00 0.00 0.00 4.85
941 1029 1.202098 CCCGTTTATAACAGCCGCAAC 60.202 52.381 0.00 0.00 0.00 4.17
942 1030 1.735571 CCGTTTATAACAGCCGCAACT 59.264 47.619 0.00 0.00 0.00 3.16
943 1031 2.475519 CCGTTTATAACAGCCGCAACTG 60.476 50.000 1.55 1.55 43.59 3.16
1204 1292 3.197116 CGGTAAGTACTCATCAACCCCTT 59.803 47.826 0.00 0.00 0.00 3.95
1405 1493 2.283834 TCTCCTCCTCTCCACTCTCTT 58.716 52.381 0.00 0.00 0.00 2.85
1410 1498 3.309121 CCTCCTCTCCACTCTCTTCTCTT 60.309 52.174 0.00 0.00 0.00 2.85
1556 1644 1.084370 GCTGGTTCCGGATGTTCTCG 61.084 60.000 4.15 0.00 0.00 4.04
1860 1948 3.003689 GTGGAATGAGAGTGTGTTGTTGG 59.996 47.826 0.00 0.00 0.00 3.77
1871 1959 5.598769 AGTGTGTTGTTGGTCTACTAGTTC 58.401 41.667 0.00 0.00 0.00 3.01
1879 1967 9.485206 GTTGTTGGTCTACTAGTTCAGAATAAA 57.515 33.333 0.00 0.00 0.00 1.40
1928 2016 2.000447 GTGTCTGACCGTTCCATAAGC 59.000 52.381 5.17 0.00 0.00 3.09
2009 2097 3.788227 TTAATGCCTGTGAAGAGTGGT 57.212 42.857 0.00 0.00 0.00 4.16
2088 2260 3.484953 TTAGAAGAGGGAGCAGGGTTA 57.515 47.619 0.00 0.00 0.00 2.85
2094 2266 2.242452 AGAGGGAGCAGGGTTAATTTCC 59.758 50.000 0.00 0.00 0.00 3.13
2226 2398 6.322969 TCGTTTAGTGGCAGATATTTCCTAGA 59.677 38.462 0.00 0.00 0.00 2.43
2310 2482 7.147976 ACATTAAGGTTTCATTTCAGCTGTTC 58.852 34.615 14.67 0.00 0.00 3.18
2323 2495 8.725148 CATTTCAGCTGTTCTGTAGACTATTTT 58.275 33.333 14.67 0.00 43.32 1.82
2349 2521 3.623510 TCATTAATTTGTACCGCGATGCA 59.376 39.130 8.23 0.00 0.00 3.96
2388 2560 9.261180 CTGATTCTTCCTACAGCGAATAATAAA 57.739 33.333 0.00 0.00 0.00 1.40
3146 3321 7.050970 AGATGTAAGTGTACTGAACTGTGAA 57.949 36.000 0.00 0.00 0.00 3.18
3734 3920 5.058490 CACAGAAATGGCAAAATGTCCTTT 58.942 37.500 0.00 0.00 0.00 3.11
3784 3970 7.171678 TGTTTTGTGGTTTACTTTTTGTTCCAG 59.828 33.333 0.00 0.00 0.00 3.86
3897 4143 1.779221 TAGGAAAATACCGAGCGGGA 58.221 50.000 14.07 4.80 39.97 5.14
3913 4159 4.385405 GACAGGCTGCGTGCTCCT 62.385 66.667 21.01 2.60 42.39 3.69
3915 4161 2.265739 CAGGCTGCGTGCTCCTTA 59.734 61.111 9.58 0.00 42.39 2.69
3960 4206 3.819188 GCTGCTCGCCAATAAGCT 58.181 55.556 0.00 0.00 39.31 3.74
3967 4213 1.823899 CGCCAATAAGCTGGGGGAC 60.824 63.158 5.45 0.00 43.85 4.46
3968 4214 1.306296 GCCAATAAGCTGGGGGACA 59.694 57.895 0.00 0.00 36.92 4.02
3969 4215 1.037579 GCCAATAAGCTGGGGGACAC 61.038 60.000 0.00 0.00 36.92 3.67
3970 4216 0.395724 CCAATAAGCTGGGGGACACC 60.396 60.000 0.00 0.00 39.11 4.16
3971 4217 0.748005 CAATAAGCTGGGGGACACCG 60.748 60.000 0.00 0.00 41.60 4.94
3972 4218 0.912487 AATAAGCTGGGGGACACCGA 60.912 55.000 0.00 0.00 41.60 4.69
3973 4219 1.338136 ATAAGCTGGGGGACACCGAG 61.338 60.000 0.42 0.42 46.95 4.63
3974 4220 2.741878 TAAGCTGGGGGACACCGAGT 62.742 60.000 7.67 0.00 46.03 4.18
3975 4221 4.394712 GCTGGGGGACACCGAGTG 62.395 72.222 7.67 2.92 46.03 3.51
3976 4222 3.706373 CTGGGGGACACCGAGTGG 61.706 72.222 0.00 0.00 39.99 4.00
3977 4223 4.242586 TGGGGGACACCGAGTGGA 62.243 66.667 8.57 0.00 41.60 4.02
3978 4224 3.391382 GGGGGACACCGAGTGGAG 61.391 72.222 8.57 0.00 41.60 3.86
3979 4225 4.083862 GGGGACACCGAGTGGAGC 62.084 72.222 8.57 0.00 37.94 4.70
3980 4226 3.311110 GGGACACCGAGTGGAGCA 61.311 66.667 8.57 0.00 37.94 4.26
3981 4227 2.262915 GGACACCGAGTGGAGCAG 59.737 66.667 8.57 0.00 37.94 4.24
3982 4228 2.262915 GACACCGAGTGGAGCAGG 59.737 66.667 8.57 0.00 37.94 4.85
3983 4229 3.302347 GACACCGAGTGGAGCAGGG 62.302 68.421 8.57 0.00 37.94 4.45
3984 4230 3.314331 CACCGAGTGGAGCAGGGT 61.314 66.667 0.00 0.00 39.21 4.34
3985 4231 2.526873 ACCGAGTGGAGCAGGGTT 60.527 61.111 0.00 0.00 39.21 4.11
3986 4232 2.046892 CCGAGTGGAGCAGGGTTG 60.047 66.667 0.00 0.00 37.49 3.77
3995 4241 3.064324 GCAGGGTTGCTCGCCAAT 61.064 61.111 0.00 0.00 46.95 3.16
3996 4242 1.748879 GCAGGGTTGCTCGCCAATA 60.749 57.895 0.00 0.00 46.95 1.90
3997 4243 1.312371 GCAGGGTTGCTCGCCAATAA 61.312 55.000 0.00 0.00 46.95 1.40
3998 4244 0.734889 CAGGGTTGCTCGCCAATAAG 59.265 55.000 0.00 0.00 35.55 1.73
3999 4245 1.032114 AGGGTTGCTCGCCAATAAGC 61.032 55.000 0.00 0.00 39.02 3.09
4000 4246 1.032114 GGGTTGCTCGCCAATAAGCT 61.032 55.000 0.00 0.00 39.31 3.74
4001 4247 0.099436 GGTTGCTCGCCAATAAGCTG 59.901 55.000 0.00 0.00 39.31 4.24
4002 4248 0.099436 GTTGCTCGCCAATAAGCTGG 59.901 55.000 0.00 0.00 39.31 4.85
4003 4249 1.031571 TTGCTCGCCAATAAGCTGGG 61.032 55.000 0.00 0.00 39.31 4.45
4005 4251 1.526917 CTCGCCAATAAGCTGGGGG 60.527 63.158 6.89 5.96 46.70 5.40
4006 4252 1.983119 CTCGCCAATAAGCTGGGGGA 61.983 60.000 6.89 9.44 46.70 4.81
4007 4253 1.526917 CGCCAATAAGCTGGGGGAG 60.527 63.158 5.45 0.00 43.85 4.30
4008 4254 1.922821 GCCAATAAGCTGGGGGAGA 59.077 57.895 0.00 0.00 36.92 3.71
4009 4255 0.466372 GCCAATAAGCTGGGGGAGAC 60.466 60.000 0.00 0.00 36.92 3.36
4010 4256 1.216990 CCAATAAGCTGGGGGAGACT 58.783 55.000 0.00 0.00 32.32 3.24
4011 4257 2.408565 CCAATAAGCTGGGGGAGACTA 58.591 52.381 0.00 0.00 32.32 2.59
4012 4258 2.370189 CCAATAAGCTGGGGGAGACTAG 59.630 54.545 0.00 0.00 32.32 2.57
4013 4259 3.041946 CAATAAGCTGGGGGAGACTAGT 58.958 50.000 0.00 0.00 0.00 2.57
4014 4260 4.223953 CAATAAGCTGGGGGAGACTAGTA 58.776 47.826 0.00 0.00 0.00 1.82
4015 4261 4.768807 ATAAGCTGGGGGAGACTAGTAT 57.231 45.455 0.00 0.00 0.00 2.12
4016 4262 5.880279 ATAAGCTGGGGGAGACTAGTATA 57.120 43.478 0.00 0.00 0.00 1.47
4017 4263 3.818295 AGCTGGGGGAGACTAGTATAG 57.182 52.381 0.00 0.00 46.50 1.31
4018 4264 2.380590 AGCTGGGGGAGACTAGTATAGG 59.619 54.545 0.00 0.00 44.97 2.57
4019 4265 2.557901 GCTGGGGGAGACTAGTATAGGG 60.558 59.091 0.00 0.00 44.97 3.53
4020 4266 2.723010 CTGGGGGAGACTAGTATAGGGT 59.277 54.545 0.00 0.00 44.97 4.34
4021 4267 2.720804 TGGGGGAGACTAGTATAGGGTC 59.279 54.545 0.00 0.00 44.97 4.46
4022 4268 2.290832 GGGGGAGACTAGTATAGGGTCG 60.291 59.091 0.00 0.00 44.97 4.79
4023 4269 2.374839 GGGGAGACTAGTATAGGGTCGT 59.625 54.545 0.00 0.00 44.97 4.34
4024 4270 3.410508 GGGAGACTAGTATAGGGTCGTG 58.589 54.545 0.00 0.00 44.97 4.35
4025 4271 3.072184 GGGAGACTAGTATAGGGTCGTGA 59.928 52.174 0.00 0.00 44.97 4.35
4026 4272 4.445448 GGGAGACTAGTATAGGGTCGTGAA 60.445 50.000 0.00 0.00 44.97 3.18
4027 4273 4.514816 GGAGACTAGTATAGGGTCGTGAAC 59.485 50.000 0.00 0.00 44.97 3.18
4028 4274 5.367302 GAGACTAGTATAGGGTCGTGAACT 58.633 45.833 0.00 0.00 44.97 3.01
4029 4275 5.367302 AGACTAGTATAGGGTCGTGAACTC 58.633 45.833 0.00 0.00 44.97 3.01
4030 4276 4.459330 ACTAGTATAGGGTCGTGAACTCC 58.541 47.826 0.00 0.00 44.97 3.85
4031 4277 3.666345 AGTATAGGGTCGTGAACTCCT 57.334 47.619 0.00 0.00 34.24 3.69
4032 4278 3.553904 AGTATAGGGTCGTGAACTCCTC 58.446 50.000 0.00 0.00 32.66 3.71
4033 4279 2.830651 ATAGGGTCGTGAACTCCTCT 57.169 50.000 0.00 0.00 32.66 3.69
4034 4280 1.835494 TAGGGTCGTGAACTCCTCTG 58.165 55.000 0.00 0.00 32.66 3.35
4035 4281 1.079750 GGGTCGTGAACTCCTCTGC 60.080 63.158 0.00 0.00 0.00 4.26
4036 4282 1.079750 GGTCGTGAACTCCTCTGCC 60.080 63.158 0.00 0.00 0.00 4.85
4037 4283 1.079750 GTCGTGAACTCCTCTGCCC 60.080 63.158 0.00 0.00 0.00 5.36
4038 4284 2.125912 CGTGAACTCCTCTGCCCG 60.126 66.667 0.00 0.00 0.00 6.13
4039 4285 2.435059 GTGAACTCCTCTGCCCGC 60.435 66.667 0.00 0.00 0.00 6.13
4040 4286 2.922503 TGAACTCCTCTGCCCGCA 60.923 61.111 0.00 0.00 0.00 5.69
4041 4287 2.125350 GAACTCCTCTGCCCGCAG 60.125 66.667 10.52 10.52 44.86 5.18
4063 4309 2.608261 GCTCTGTGCTAGACGTGAACTT 60.608 50.000 0.00 0.00 38.95 2.66
4156 4408 3.577848 CTCTGCATCAGTAGGCCTATCTT 59.422 47.826 17.38 1.91 32.61 2.40
4181 4433 0.528466 ACATATGTCGTCGCTGCCTG 60.528 55.000 1.41 0.00 0.00 4.85
4192 4444 1.504647 CGCTGCCTGCACCATATGAG 61.505 60.000 3.65 0.00 43.06 2.90
4208 4460 1.306148 TGAGTATGCTCCCTACGTCG 58.694 55.000 8.45 0.00 40.95 5.12
4216 4468 1.532007 GCTCCCTACGTCGTATCTCTG 59.468 57.143 5.39 0.00 0.00 3.35
4217 4469 2.836262 CTCCCTACGTCGTATCTCTGT 58.164 52.381 5.39 0.00 0.00 3.41
4218 4470 2.801679 CTCCCTACGTCGTATCTCTGTC 59.198 54.545 5.39 0.00 0.00 3.51
4219 4471 1.872313 CCCTACGTCGTATCTCTGTCC 59.128 57.143 5.39 0.00 0.00 4.02
4220 4472 1.526041 CCTACGTCGTATCTCTGTCCG 59.474 57.143 5.39 0.00 0.00 4.79
4221 4473 1.526041 CTACGTCGTATCTCTGTCCGG 59.474 57.143 5.39 0.00 0.00 5.14
4222 4474 0.392193 ACGTCGTATCTCTGTCCGGT 60.392 55.000 0.00 0.00 0.00 5.28
4223 4475 0.731417 CGTCGTATCTCTGTCCGGTT 59.269 55.000 0.00 0.00 0.00 4.44
4224 4476 1.531264 CGTCGTATCTCTGTCCGGTTG 60.531 57.143 0.00 0.00 0.00 3.77
4225 4477 0.454600 TCGTATCTCTGTCCGGTTGC 59.545 55.000 0.00 0.00 0.00 4.17
4236 4488 0.899720 TCCGGTTGCTACTAGGGTTG 59.100 55.000 0.00 0.00 0.00 3.77
4289 4541 0.325933 TCCTCAGCCTTGTGACATGG 59.674 55.000 12.73 12.73 0.00 3.66
4315 4567 2.687935 TCTGCAAACTCCACTTCAAACC 59.312 45.455 0.00 0.00 0.00 3.27
4316 4568 1.403679 TGCAAACTCCACTTCAAACCG 59.596 47.619 0.00 0.00 0.00 4.44
4317 4569 1.404035 GCAAACTCCACTTCAAACCGT 59.596 47.619 0.00 0.00 0.00 4.83
4351 4603 2.815647 CCGTCCGAAAGCAGCTCC 60.816 66.667 0.00 0.00 0.00 4.70
4391 4643 3.568538 GTTTCATTGTCACACATGAGCC 58.431 45.455 0.00 0.00 34.75 4.70
4395 4647 2.174363 TTGTCACACATGAGCCTGAG 57.826 50.000 0.00 0.00 34.75 3.35
4408 4663 0.933796 GCCTGAGCTGTAATCTTCGC 59.066 55.000 0.00 0.00 35.50 4.70
4416 4671 4.051922 AGCTGTAATCTTCGCTTTATCCG 58.948 43.478 0.00 0.00 0.00 4.18
4422 4677 0.105039 CTTCGCTTTATCCGCCCTCT 59.895 55.000 0.00 0.00 0.00 3.69
4446 4701 1.202417 ACCGCTCGTCATATCTTGGTG 60.202 52.381 0.00 0.00 0.00 4.17
4457 4712 1.381867 ATCTTGGTGGGGGTGAATGA 58.618 50.000 0.00 0.00 0.00 2.57
4464 4719 1.060729 TGGGGGTGAATGACTTTCGA 58.939 50.000 0.00 0.00 37.13 3.71
4561 4816 7.067251 TCCCTCTCTCGTTAAGAATTTACTCTC 59.933 40.741 0.00 0.00 32.23 3.20
4564 4819 7.763356 TCTCTCGTTAAGAATTTACTCTCTGG 58.237 38.462 0.00 0.00 32.23 3.86
4567 4822 7.176165 TCTCGTTAAGAATTTACTCTCTGGTCA 59.824 37.037 0.00 0.00 0.00 4.02
4569 4824 6.310711 CGTTAAGAATTTACTCTCTGGTCACC 59.689 42.308 0.00 0.00 0.00 4.02
4595 4850 1.000955 ACTCGCGACAATCCTGTTTCT 59.999 47.619 3.71 0.00 35.30 2.52
4596 4851 1.391485 CTCGCGACAATCCTGTTTCTG 59.609 52.381 3.71 0.00 35.30 3.02
4608 4863 7.502226 ACAATCCTGTTTCTGTCAAGTTTGATA 59.498 33.333 0.00 0.00 33.79 2.15
4689 4945 8.458573 TCATTCCAAGTAACAACAGTTTACAT 57.541 30.769 0.00 0.00 0.00 2.29
4709 4965 5.008331 ACATGATGAATGACATATCCCTGC 58.992 41.667 0.00 0.00 39.56 4.85
4726 4982 4.721776 TCCCTGCTGTATTACTTCTGGAAT 59.278 41.667 10.84 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.185901 AAGCTTGGCAAAGACAGGGA 59.814 50.000 4.56 0.00 35.19 4.20
68 69 4.324022 GGTAGTACCCCTTGTTGTAATGCT 60.324 45.833 8.27 0.00 30.04 3.79
72 73 4.467438 GCTAGGTAGTACCCCTTGTTGTAA 59.533 45.833 16.05 0.00 39.75 2.41
277 278 5.763355 AGTCATGATCTCCCACATTTGATT 58.237 37.500 0.00 0.00 0.00 2.57
408 409 1.755380 GTAGTCCAGGTTGCCGATAGT 59.245 52.381 0.00 0.00 0.00 2.12
434 435 3.804325 CGGATCTTTCTGACGCATATTGT 59.196 43.478 0.00 0.00 0.00 2.71
448 449 1.978580 ACTTGTGGGTCTCGGATCTTT 59.021 47.619 0.00 0.00 0.00 2.52
472 473 0.879400 GATCCTGCTGCAGTCGATGG 60.879 60.000 26.41 12.49 0.00 3.51
477 478 0.743701 CACCAGATCCTGCTGCAGTC 60.744 60.000 26.41 18.51 34.56 3.51
508 509 2.125106 GCGTCGCCCTTGATCCTT 60.125 61.111 5.75 0.00 0.00 3.36
692 732 9.052759 GCTTAGATAAATAGAAAAATGACCCGA 57.947 33.333 0.00 0.00 0.00 5.14
693 733 8.290325 GGCTTAGATAAATAGAAAAATGACCCG 58.710 37.037 0.00 0.00 0.00 5.28
732 795 3.117888 AGGCACCGATATCAGTCCATTTT 60.118 43.478 3.12 0.00 0.00 1.82
859 947 7.360861 CCGACATGTAAGAGCATTGTCTAAAAA 60.361 37.037 0.00 0.00 31.29 1.94
860 948 6.092122 CCGACATGTAAGAGCATTGTCTAAAA 59.908 38.462 0.00 0.00 31.29 1.52
861 949 5.580691 CCGACATGTAAGAGCATTGTCTAAA 59.419 40.000 0.00 0.00 31.29 1.85
862 950 5.105513 TCCGACATGTAAGAGCATTGTCTAA 60.106 40.000 0.00 0.00 31.29 2.10
863 951 4.401202 TCCGACATGTAAGAGCATTGTCTA 59.599 41.667 0.00 0.00 31.29 2.59
864 952 3.195610 TCCGACATGTAAGAGCATTGTCT 59.804 43.478 0.00 0.00 31.29 3.41
865 953 3.307242 GTCCGACATGTAAGAGCATTGTC 59.693 47.826 0.00 0.00 0.00 3.18
866 954 3.262420 GTCCGACATGTAAGAGCATTGT 58.738 45.455 0.00 0.00 0.00 2.71
867 955 3.062639 GTGTCCGACATGTAAGAGCATTG 59.937 47.826 4.13 0.00 0.00 2.82
868 956 3.262420 GTGTCCGACATGTAAGAGCATT 58.738 45.455 4.13 0.00 0.00 3.56
869 957 2.735444 CGTGTCCGACATGTAAGAGCAT 60.735 50.000 11.96 0.00 35.63 3.79
870 958 1.402325 CGTGTCCGACATGTAAGAGCA 60.402 52.381 11.96 0.00 35.63 4.26
871 959 1.269166 CGTGTCCGACATGTAAGAGC 58.731 55.000 11.96 0.00 35.63 4.09
872 960 1.135373 AGCGTGTCCGACATGTAAGAG 60.135 52.381 19.58 0.00 37.43 2.85
873 961 0.885879 AGCGTGTCCGACATGTAAGA 59.114 50.000 19.58 0.00 37.43 2.10
874 962 1.390123 CAAGCGTGTCCGACATGTAAG 59.610 52.381 19.58 7.94 37.43 2.34
917 1005 2.771435 GCTGTTATAAACGGGCCGT 58.229 52.632 28.83 28.83 43.97 5.68
923 1011 2.158841 ACAGTTGCGGCTGTTATAAACG 59.841 45.455 7.10 0.00 46.45 3.60
924 1012 3.824414 ACAGTTGCGGCTGTTATAAAC 57.176 42.857 7.10 0.00 46.45 2.01
932 1020 0.381801 AAGTGAAACAGTTGCGGCTG 59.618 50.000 0.00 5.88 41.43 4.85
933 1021 0.381801 CAAGTGAAACAGTTGCGGCT 59.618 50.000 0.00 0.00 41.43 5.52
934 1022 0.594796 CCAAGTGAAACAGTTGCGGC 60.595 55.000 12.16 0.00 41.76 6.53
935 1023 0.594796 GCCAAGTGAAACAGTTGCGG 60.595 55.000 12.16 3.50 41.76 5.69
936 1024 0.100325 TGCCAAGTGAAACAGTTGCG 59.900 50.000 12.16 8.00 41.76 4.85
937 1025 2.159254 TCTTGCCAAGTGAAACAGTTGC 60.159 45.455 4.04 9.13 41.76 4.17
938 1026 3.781079 TCTTGCCAAGTGAAACAGTTG 57.219 42.857 4.04 11.04 42.47 3.16
939 1027 3.131046 CCTTCTTGCCAAGTGAAACAGTT 59.869 43.478 4.04 0.00 41.43 3.16
940 1028 2.689983 CCTTCTTGCCAAGTGAAACAGT 59.310 45.455 4.04 0.00 41.43 3.55
941 1029 2.544486 GCCTTCTTGCCAAGTGAAACAG 60.544 50.000 4.04 0.00 41.43 3.16
942 1030 1.408702 GCCTTCTTGCCAAGTGAAACA 59.591 47.619 4.04 0.00 41.43 2.83
943 1031 1.600413 CGCCTTCTTGCCAAGTGAAAC 60.600 52.381 4.04 0.00 0.00 2.78
1204 1292 1.899437 GAAGAGATGGACGGTGGGCA 61.899 60.000 0.00 0.00 0.00 5.36
1405 1493 3.753797 CGATGGAGATCCGATGTAAGAGA 59.246 47.826 0.00 0.00 39.43 3.10
1410 1498 0.521735 CGCGATGGAGATCCGATGTA 59.478 55.000 0.00 0.00 39.43 2.29
1556 1644 2.203029 GGCTTGTAGGCCGCTACC 60.203 66.667 0.00 0.00 42.82 3.18
1871 1959 9.626045 GGTCCATGAAACTAAAACTTTATTCTG 57.374 33.333 0.00 0.00 0.00 3.02
1879 1967 5.535030 GGAACTGGTCCATGAAACTAAAACT 59.465 40.000 6.92 0.00 46.97 2.66
1894 1982 2.365617 TCAGACACAGAAGGAACTGGTC 59.634 50.000 0.00 0.00 40.86 4.02
1928 2016 3.572682 TCCCACTATACCATAACGCAGAG 59.427 47.826 0.00 0.00 0.00 3.35
2009 2097 6.039717 GCCAAGGAATCATCTTAACAGCATTA 59.960 38.462 0.00 0.00 0.00 1.90
2062 2234 4.568592 CCCTGCTCCCTCTTCTAAACAAAT 60.569 45.833 0.00 0.00 0.00 2.32
2088 2260 1.228552 ACGCCCTGTGCTGGAAATT 60.229 52.632 0.00 0.00 38.05 1.82
2136 2308 6.414732 TCCAGTATTCCACTTAATCCACTTG 58.585 40.000 0.00 0.00 34.26 3.16
2323 2495 6.853872 GCATCGCGGTACAAATTAATGAAATA 59.146 34.615 6.13 0.00 0.00 1.40
2409 2581 5.362263 GTTGTGAACCAGTACTGTCCTAAA 58.638 41.667 21.18 6.15 0.00 1.85
2803 2977 1.412343 ACAAAAATCAGGGTGGTGCAC 59.588 47.619 8.80 8.80 0.00 4.57
3095 3269 6.980397 ACTGAAATGGAAAGCTAAACAAACAG 59.020 34.615 0.00 0.00 0.00 3.16
3146 3321 5.705609 AAATACCGCAAACTGAAACTGAT 57.294 34.783 0.00 0.00 0.00 2.90
3207 3382 2.260869 GCATGTCACCGGCAACACT 61.261 57.895 11.36 0.02 0.00 3.55
3256 3431 6.095860 TGGCAGGAGTAAATCAAGATCATTTG 59.904 38.462 0.00 0.00 0.00 2.32
3330 3505 9.764363 AAATGGAAAAGAAAAATGTTAGTCCTC 57.236 29.630 0.00 0.00 0.00 3.71
3576 3751 2.355010 ATACAAGAAGCAGCCCCATC 57.645 50.000 0.00 0.00 0.00 3.51
3734 3920 8.783903 ACATACTCTTTAACCCCATAATAACCA 58.216 33.333 0.00 0.00 0.00 3.67
3815 4006 7.435192 CAGCGTGTATCTGAAATAATGTACAGA 59.565 37.037 0.33 0.00 42.26 3.41
3905 4151 2.285827 CTCCAAGAGTAAGGAGCACG 57.714 55.000 0.00 0.00 44.37 5.34
3913 4159 1.203087 TCGGTGTCCCTCCAAGAGTAA 60.203 52.381 0.00 0.00 0.00 2.24
3915 4161 0.900647 CTCGGTGTCCCTCCAAGAGT 60.901 60.000 0.00 0.00 0.00 3.24
3926 4172 2.262915 CCTGCTCCACTCGGTGTC 59.737 66.667 3.82 0.00 0.00 3.67
3960 4206 4.242586 TCCACTCGGTGTCCCCCA 62.243 66.667 3.82 0.00 0.00 4.96
3967 4213 2.883828 AACCCTGCTCCACTCGGTG 61.884 63.158 0.00 0.00 0.00 4.94
3968 4214 2.526873 AACCCTGCTCCACTCGGT 60.527 61.111 0.00 0.00 0.00 4.69
3969 4215 2.046892 CAACCCTGCTCCACTCGG 60.047 66.667 0.00 0.00 0.00 4.63
3970 4216 2.743928 GCAACCCTGCTCCACTCG 60.744 66.667 0.00 0.00 45.74 4.18
3979 4225 0.734889 CTTATTGGCGAGCAACCCTG 59.265 55.000 0.00 0.00 0.00 4.45
3980 4226 1.032114 GCTTATTGGCGAGCAACCCT 61.032 55.000 0.00 0.00 38.73 4.34
3981 4227 1.032114 AGCTTATTGGCGAGCAACCC 61.032 55.000 0.00 0.00 41.31 4.11
3982 4228 0.099436 CAGCTTATTGGCGAGCAACC 59.901 55.000 0.00 0.00 41.31 3.77
3983 4229 0.099436 CCAGCTTATTGGCGAGCAAC 59.901 55.000 0.00 0.00 41.31 4.17
3984 4230 1.031571 CCCAGCTTATTGGCGAGCAA 61.032 55.000 0.00 0.00 41.31 3.91
3985 4231 1.451927 CCCAGCTTATTGGCGAGCA 60.452 57.895 0.00 0.00 41.31 4.26
3986 4232 2.189499 CCCCAGCTTATTGGCGAGC 61.189 63.158 0.00 0.00 36.88 5.03
3987 4233 1.526917 CCCCCAGCTTATTGGCGAG 60.527 63.158 0.00 0.00 36.88 5.03
3988 4234 1.983119 CTCCCCCAGCTTATTGGCGA 61.983 60.000 0.00 0.00 36.88 5.54
3989 4235 1.526917 CTCCCCCAGCTTATTGGCG 60.527 63.158 0.00 0.00 36.88 5.69
3990 4236 0.466372 GTCTCCCCCAGCTTATTGGC 60.466 60.000 0.00 0.00 36.88 4.52
3991 4237 1.216990 AGTCTCCCCCAGCTTATTGG 58.783 55.000 0.00 0.00 38.00 3.16
3992 4238 3.041946 ACTAGTCTCCCCCAGCTTATTG 58.958 50.000 0.00 0.00 0.00 1.90
3993 4239 3.423058 ACTAGTCTCCCCCAGCTTATT 57.577 47.619 0.00 0.00 0.00 1.40
3994 4240 4.768807 ATACTAGTCTCCCCCAGCTTAT 57.231 45.455 0.00 0.00 0.00 1.73
3995 4241 4.044317 CCTATACTAGTCTCCCCCAGCTTA 59.956 50.000 0.00 0.00 0.00 3.09
3996 4242 3.181416 CCTATACTAGTCTCCCCCAGCTT 60.181 52.174 0.00 0.00 0.00 3.74
3997 4243 2.380590 CCTATACTAGTCTCCCCCAGCT 59.619 54.545 0.00 0.00 0.00 4.24
3998 4244 2.557901 CCCTATACTAGTCTCCCCCAGC 60.558 59.091 0.00 0.00 0.00 4.85
3999 4245 2.723010 ACCCTATACTAGTCTCCCCCAG 59.277 54.545 0.00 0.00 0.00 4.45
4000 4246 2.720804 GACCCTATACTAGTCTCCCCCA 59.279 54.545 0.00 0.00 0.00 4.96
4001 4247 2.290832 CGACCCTATACTAGTCTCCCCC 60.291 59.091 0.00 0.00 0.00 5.40
4002 4248 2.374839 ACGACCCTATACTAGTCTCCCC 59.625 54.545 0.00 0.00 0.00 4.81
4003 4249 3.072184 TCACGACCCTATACTAGTCTCCC 59.928 52.174 0.00 0.00 0.00 4.30
4004 4250 4.348863 TCACGACCCTATACTAGTCTCC 57.651 50.000 0.00 0.00 0.00 3.71
4005 4251 5.367302 AGTTCACGACCCTATACTAGTCTC 58.633 45.833 0.00 0.00 0.00 3.36
4006 4252 5.367302 GAGTTCACGACCCTATACTAGTCT 58.633 45.833 0.00 0.00 0.00 3.24
4007 4253 4.514816 GGAGTTCACGACCCTATACTAGTC 59.485 50.000 0.00 0.00 0.00 2.59
4008 4254 4.165758 AGGAGTTCACGACCCTATACTAGT 59.834 45.833 0.00 0.00 30.14 2.57
4009 4255 4.716794 AGGAGTTCACGACCCTATACTAG 58.283 47.826 0.00 0.00 30.14 2.57
4010 4256 4.411540 AGAGGAGTTCACGACCCTATACTA 59.588 45.833 0.00 0.00 31.52 1.82
4011 4257 3.202595 AGAGGAGTTCACGACCCTATACT 59.797 47.826 0.00 0.00 31.52 2.12
4012 4258 3.315749 CAGAGGAGTTCACGACCCTATAC 59.684 52.174 0.00 0.00 31.52 1.47
4013 4259 3.552875 CAGAGGAGTTCACGACCCTATA 58.447 50.000 0.00 0.00 31.52 1.31
4014 4260 2.379972 CAGAGGAGTTCACGACCCTAT 58.620 52.381 0.00 0.00 31.52 2.57
4015 4261 1.835494 CAGAGGAGTTCACGACCCTA 58.165 55.000 0.00 0.00 31.52 3.53
4016 4262 1.536943 GCAGAGGAGTTCACGACCCT 61.537 60.000 0.00 0.00 33.31 4.34
4017 4263 1.079750 GCAGAGGAGTTCACGACCC 60.080 63.158 0.00 0.00 0.00 4.46
4018 4264 1.079750 GGCAGAGGAGTTCACGACC 60.080 63.158 0.00 0.00 0.00 4.79
4019 4265 1.079750 GGGCAGAGGAGTTCACGAC 60.080 63.158 0.00 0.00 0.00 4.34
4020 4266 2.636412 CGGGCAGAGGAGTTCACGA 61.636 63.158 0.00 0.00 0.00 4.35
4021 4267 2.125912 CGGGCAGAGGAGTTCACG 60.126 66.667 0.00 0.00 0.00 4.35
4022 4268 2.435059 GCGGGCAGAGGAGTTCAC 60.435 66.667 0.00 0.00 0.00 3.18
4023 4269 2.922503 TGCGGGCAGAGGAGTTCA 60.923 61.111 0.00 0.00 0.00 3.18
4024 4270 2.125350 CTGCGGGCAGAGGAGTTC 60.125 66.667 15.38 0.00 46.30 3.01
4025 4271 3.710722 CCTGCGGGCAGAGGAGTT 61.711 66.667 21.59 0.00 46.30 3.01
4042 4288 1.068194 AGTTCACGTCTAGCACAGAGC 60.068 52.381 0.00 0.00 46.19 4.09
4043 4289 2.983136 CAAGTTCACGTCTAGCACAGAG 59.017 50.000 0.00 0.00 32.51 3.35
4044 4290 2.361119 ACAAGTTCACGTCTAGCACAGA 59.639 45.455 0.00 0.00 0.00 3.41
4045 4291 2.472861 CACAAGTTCACGTCTAGCACAG 59.527 50.000 0.00 0.00 0.00 3.66
4106 4352 3.249189 GGGGGCGAGGATGGCATA 61.249 66.667 0.00 0.00 43.90 3.14
4131 4383 0.813210 GGCCTACTGATGCAGAGTGC 60.813 60.000 10.70 6.86 45.29 4.40
4132 4384 0.829333 AGGCCTACTGATGCAGAGTG 59.171 55.000 1.29 2.54 35.18 3.51
4133 4385 2.461300 TAGGCCTACTGATGCAGAGT 57.539 50.000 8.91 6.43 35.18 3.24
4134 4386 3.164268 AGATAGGCCTACTGATGCAGAG 58.836 50.000 16.61 0.00 35.18 3.35
4135 4387 3.251016 AGATAGGCCTACTGATGCAGA 57.749 47.619 16.61 0.00 35.18 4.26
4137 4389 3.041211 ACAAGATAGGCCTACTGATGCA 58.959 45.455 16.61 0.00 0.00 3.96
4156 4408 0.248336 GCGACGACATATGTCCGACA 60.248 55.000 27.88 3.10 41.86 4.35
4192 4444 3.072944 AGATACGACGTAGGGAGCATAC 58.927 50.000 13.87 0.00 0.00 2.39
4208 4460 2.688958 AGTAGCAACCGGACAGAGATAC 59.311 50.000 9.46 6.08 0.00 2.24
4216 4468 0.900421 AACCCTAGTAGCAACCGGAC 59.100 55.000 9.46 0.00 0.00 4.79
4217 4469 0.899720 CAACCCTAGTAGCAACCGGA 59.100 55.000 9.46 0.00 0.00 5.14
4218 4470 0.107848 CCAACCCTAGTAGCAACCGG 60.108 60.000 0.00 0.00 0.00 5.28
4219 4471 0.743345 GCCAACCCTAGTAGCAACCG 60.743 60.000 0.00 0.00 0.00 4.44
4220 4472 0.393944 GGCCAACCCTAGTAGCAACC 60.394 60.000 0.00 0.00 0.00 3.77
4221 4473 3.170360 GGCCAACCCTAGTAGCAAC 57.830 57.895 0.00 0.00 0.00 4.17
4289 4541 1.973812 GTGGAGTTTGCAGAGGCCC 60.974 63.158 0.00 0.00 40.13 5.80
4333 4585 3.491652 GAGCTGCTTTCGGACGGC 61.492 66.667 2.53 0.00 38.50 5.68
4351 4603 1.676529 ACCATGTCGAGGTATCAGTCG 59.323 52.381 0.00 0.00 37.67 4.18
4391 4643 5.176590 GGATAAAGCGAAGATTACAGCTCAG 59.823 44.000 0.00 0.00 31.23 3.35
4395 4647 3.363084 GCGGATAAAGCGAAGATTACAGC 60.363 47.826 0.00 0.00 31.23 4.40
4408 4663 2.802057 CGGTACAAGAGGGCGGATAAAG 60.802 54.545 0.00 0.00 0.00 1.85
4416 4671 2.202756 CGAGCGGTACAAGAGGGC 60.203 66.667 0.00 0.00 0.00 5.19
4422 4677 3.490249 CCAAGATATGACGAGCGGTACAA 60.490 47.826 0.00 0.00 0.00 2.41
4446 4701 2.289565 GATCGAAAGTCATTCACCCCC 58.710 52.381 0.00 0.00 37.96 5.40
4457 4712 2.868044 GCCTGTGTGAGTGATCGAAAGT 60.868 50.000 0.00 0.00 0.00 2.66
4464 4719 0.986527 TCATGGCCTGTGTGAGTGAT 59.013 50.000 3.32 0.00 0.00 3.06
4522 4777 2.175202 GAGAGGGAGAGAGCAAGACAA 58.825 52.381 0.00 0.00 0.00 3.18
4561 4816 0.946221 GCGAGTGAGTTGGTGACCAG 60.946 60.000 3.77 0.00 33.81 4.00
4564 4819 1.007734 TCGCGAGTGAGTTGGTGAC 60.008 57.895 3.71 0.00 0.00 3.67
4567 4822 0.033504 ATTGTCGCGAGTGAGTTGGT 59.966 50.000 10.24 0.00 0.00 3.67
4569 4824 0.716108 GGATTGTCGCGAGTGAGTTG 59.284 55.000 10.24 0.00 0.00 3.16
4595 4850 8.017418 AGAACCCAAATTTATCAAACTTGACA 57.983 30.769 0.00 0.00 40.49 3.58
4596 4851 8.360390 AGAGAACCCAAATTTATCAAACTTGAC 58.640 33.333 0.00 0.00 40.49 3.18
4658 4914 5.537188 TGTTGTTACTTGGAATGAAATGGC 58.463 37.500 0.00 0.00 0.00 4.40
4689 4945 4.103627 ACAGCAGGGATATGTCATTCATCA 59.896 41.667 0.00 0.00 37.91 3.07
4726 4982 4.405358 GGCATCATTCCCTGGAACAAATTA 59.595 41.667 0.00 0.00 38.70 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.