Multiple sequence alignment - TraesCS3A01G218200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G218200 chr3A 100.000 5628 0 0 1 5628 400754113 400759740 0.000000e+00 10394
1 TraesCS3A01G218200 chr3A 88.402 388 37 5 5176 5557 44246071 44245686 1.430000e-125 460
2 TraesCS3A01G218200 chr3A 93.258 89 4 2 2618 2706 400756596 400756682 4.580000e-26 130
3 TraesCS3A01G218200 chr3A 93.258 89 4 2 2484 2570 400756730 400756818 4.580000e-26 130
4 TraesCS3A01G218200 chr3B 91.598 3261 153 50 1960 5160 396729642 396726443 0.000000e+00 4392
5 TraesCS3A01G218200 chr3B 95.218 1213 25 10 756 1961 396731083 396729897 0.000000e+00 1888
6 TraesCS3A01G218200 chr3B 93.232 591 34 1 1 591 164566086 164566670 0.000000e+00 865
7 TraesCS3A01G218200 chr3B 93.407 91 6 0 2618 2708 396729122 396729032 9.840000e-28 135
8 TraesCS3A01G218200 chr3B 93.182 88 3 2 2484 2570 396728986 396728901 5.920000e-25 126
9 TraesCS3A01G218200 chr3D 91.216 2550 126 36 2656 5160 322764791 322762295 0.000000e+00 3378
10 TraesCS3A01G218200 chr3D 96.410 1504 45 5 752 2252 322766575 322765078 0.000000e+00 2470
11 TraesCS3A01G218200 chr3D 88.809 697 62 5 1 687 317194616 317195306 0.000000e+00 841
12 TraesCS3A01G218200 chr3D 87.249 698 76 10 1 687 547933677 547932982 0.000000e+00 784
13 TraesCS3A01G218200 chr3D 88.144 388 38 5 5176 5557 373599403 373599788 6.650000e-124 455
14 TraesCS3A01G218200 chr3D 94.237 295 12 5 2293 2583 322765076 322764783 4.000000e-121 446
15 TraesCS3A01G218200 chr7D 89.256 726 63 10 1 718 383313031 383313749 0.000000e+00 894
16 TraesCS3A01G218200 chr1D 89.527 697 55 8 1 687 110772028 110771340 0.000000e+00 867
17 TraesCS3A01G218200 chr1D 88.114 387 37 7 5177 5557 102156658 102156275 8.600000e-123 451
18 TraesCS3A01G218200 chr1D 87.724 391 39 6 5172 5557 464255995 464256381 1.110000e-121 448
19 TraesCS3A01G218200 chr6D 90.741 648 45 9 1 635 368733189 368732544 0.000000e+00 850
20 TraesCS3A01G218200 chr1B 88.970 689 65 6 1 688 654858548 654859226 0.000000e+00 841
21 TraesCS3A01G218200 chr5A 88.792 687 60 10 1 675 55246093 55246774 0.000000e+00 826
22 TraesCS3A01G218200 chr5A 87.879 693 73 6 1 692 236869353 236870035 0.000000e+00 804
23 TraesCS3A01G218200 chrUn 89.107 661 64 5 1 654 28751713 28752372 0.000000e+00 815
24 TraesCS3A01G218200 chr6A 89.231 650 60 7 1 642 481342462 481341815 0.000000e+00 804
25 TraesCS3A01G218200 chr4A 88.520 392 38 4 5172 5557 503613493 503613883 8.540000e-128 468
26 TraesCS3A01G218200 chr2D 88.372 387 38 5 5176 5557 617045060 617044676 5.140000e-125 459
27 TraesCS3A01G218200 chr2D 83.696 184 26 4 511 692 512165921 512166102 2.700000e-38 171
28 TraesCS3A01G218200 chr1A 87.887 388 39 5 5176 5557 508210000 508209615 3.090000e-122 449
29 TraesCS3A01G218200 chr5D 87.855 387 40 4 5176 5557 256182883 256182499 1.110000e-121 448
30 TraesCS3A01G218200 chr2A 87.532 393 39 6 5173 5557 11996912 11997302 4.000000e-121 446
31 TraesCS3A01G218200 chr7A 77.206 272 43 15 458 718 547144317 547144054 2.110000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G218200 chr3A 400754113 400759740 5627 False 3551.333333 10394 95.505333 1 5628 3 chr3A.!!$F1 5627
1 TraesCS3A01G218200 chr3B 396726443 396731083 4640 True 1635.250000 4392 93.351250 756 5160 4 chr3B.!!$R1 4404
2 TraesCS3A01G218200 chr3B 164566086 164566670 584 False 865.000000 865 93.232000 1 591 1 chr3B.!!$F1 590
3 TraesCS3A01G218200 chr3D 322762295 322766575 4280 True 2098.000000 3378 93.954333 752 5160 3 chr3D.!!$R2 4408
4 TraesCS3A01G218200 chr3D 317194616 317195306 690 False 841.000000 841 88.809000 1 687 1 chr3D.!!$F1 686
5 TraesCS3A01G218200 chr3D 547932982 547933677 695 True 784.000000 784 87.249000 1 687 1 chr3D.!!$R1 686
6 TraesCS3A01G218200 chr7D 383313031 383313749 718 False 894.000000 894 89.256000 1 718 1 chr7D.!!$F1 717
7 TraesCS3A01G218200 chr1D 110771340 110772028 688 True 867.000000 867 89.527000 1 687 1 chr1D.!!$R2 686
8 TraesCS3A01G218200 chr6D 368732544 368733189 645 True 850.000000 850 90.741000 1 635 1 chr6D.!!$R1 634
9 TraesCS3A01G218200 chr1B 654858548 654859226 678 False 841.000000 841 88.970000 1 688 1 chr1B.!!$F1 687
10 TraesCS3A01G218200 chr5A 55246093 55246774 681 False 826.000000 826 88.792000 1 675 1 chr5A.!!$F1 674
11 TraesCS3A01G218200 chr5A 236869353 236870035 682 False 804.000000 804 87.879000 1 692 1 chr5A.!!$F2 691
12 TraesCS3A01G218200 chrUn 28751713 28752372 659 False 815.000000 815 89.107000 1 654 1 chrUn.!!$F1 653
13 TraesCS3A01G218200 chr6A 481341815 481342462 647 True 804.000000 804 89.231000 1 642 1 chr6A.!!$R1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.033920 CTCGATGGGGCATCATTCGA 59.966 55.0 0.00 0.0 40.54 3.71 F
1581 1653 0.109132 GCTGGGTTTGGCTGATTTCG 60.109 55.0 0.00 0.0 0.00 3.46 F
2277 2611 0.105913 AGGGGCGTGGAAAGGAAAAA 60.106 50.0 0.00 0.0 0.00 1.94 F
2678 3015 0.041833 CTTCTCCTCTCCCTCCCACA 59.958 60.0 0.00 0.0 0.00 4.17 F
2937 3274 0.615331 TCAAGCTTGAATCCGCTCCT 59.385 50.0 26.61 0.0 34.96 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 2427 0.251341 AGGGTCAATGTGCTTGGTCC 60.251 55.000 0.0 0.0 35.43 4.46 R
2570 2907 0.177836 GAGCTGAAGAAGAGGGAGGC 59.822 60.000 0.0 0.0 0.00 4.70 R
3224 3565 1.575419 ACCGCTACCCACAATCCTTA 58.425 50.000 0.0 0.0 0.00 2.69 R
4370 4725 1.541147 TCAAATGTAAGGCAGCACAGC 59.459 47.619 0.0 0.0 0.00 4.40 R
4883 5241 1.001633 GCTCCAGTAACGGGTCAAAGA 59.998 52.381 0.0 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 164 0.033920 CTCGATGGGGCATCATTCGA 59.966 55.000 0.00 0.00 40.54 3.71
178 179 6.983307 GCATCATTCGATATCCTGCTAATACT 59.017 38.462 0.00 0.00 0.00 2.12
196 197 1.599542 ACTTGAAGCACGCAGAAACTC 59.400 47.619 0.00 0.00 0.00 3.01
290 291 4.065088 CGATCAAGGGTTTCAGTTTCAGA 58.935 43.478 0.00 0.00 0.00 3.27
292 293 4.771114 TCAAGGGTTTCAGTTTCAGAGA 57.229 40.909 0.00 0.00 0.00 3.10
356 357 5.867903 ACAGTTCACCCAATTTCATCAAA 57.132 34.783 0.00 0.00 0.00 2.69
576 617 9.453572 TGCAAATTATTAATGTAAAATTGGGCA 57.546 25.926 12.44 12.44 33.63 5.36
607 665 1.672363 ACATATAGGTCGACGCGTTGA 59.328 47.619 25.09 25.09 0.00 3.18
645 704 7.863877 ACTTATATCAAAAACAAAACGGACACC 59.136 33.333 0.00 0.00 0.00 4.16
665 724 1.463674 GGCAGACGACCAATCCAAAT 58.536 50.000 0.00 0.00 0.00 2.32
692 751 4.914312 AAAAGCGAATGAAATCGTCGTA 57.086 36.364 7.76 0.00 44.49 3.43
702 767 1.709147 AATCGTCGTAGGTCGTCCCG 61.709 60.000 0.00 0.00 40.80 5.14
706 771 0.802494 GTCGTAGGTCGTCCCGTTAA 59.198 55.000 0.00 0.00 40.80 2.01
714 779 1.869132 GTCGTCCCGTTAAAGTTGCTT 59.131 47.619 0.00 0.00 0.00 3.91
715 780 2.096565 GTCGTCCCGTTAAAGTTGCTTC 60.097 50.000 0.00 0.00 0.00 3.86
716 781 2.140717 CGTCCCGTTAAAGTTGCTTCT 58.859 47.619 0.00 0.00 0.00 2.85
717 782 3.005684 TCGTCCCGTTAAAGTTGCTTCTA 59.994 43.478 0.00 0.00 0.00 2.10
718 783 3.930848 CGTCCCGTTAAAGTTGCTTCTAT 59.069 43.478 0.00 0.00 0.00 1.98
719 784 5.104374 CGTCCCGTTAAAGTTGCTTCTATA 58.896 41.667 0.00 0.00 0.00 1.31
720 785 5.751990 CGTCCCGTTAAAGTTGCTTCTATAT 59.248 40.000 0.00 0.00 0.00 0.86
721 786 6.292168 CGTCCCGTTAAAGTTGCTTCTATATG 60.292 42.308 0.00 0.00 0.00 1.78
722 787 6.537660 GTCCCGTTAAAGTTGCTTCTATATGT 59.462 38.462 0.00 0.00 0.00 2.29
723 788 6.537301 TCCCGTTAAAGTTGCTTCTATATGTG 59.463 38.462 0.00 0.00 0.00 3.21
724 789 6.315393 CCCGTTAAAGTTGCTTCTATATGTGT 59.685 38.462 0.00 0.00 0.00 3.72
725 790 7.148306 CCCGTTAAAGTTGCTTCTATATGTGTT 60.148 37.037 0.00 0.00 0.00 3.32
726 791 7.903431 CCGTTAAAGTTGCTTCTATATGTGTTC 59.097 37.037 0.00 0.00 0.00 3.18
727 792 7.630987 CGTTAAAGTTGCTTCTATATGTGTTCG 59.369 37.037 0.00 0.00 0.00 3.95
728 793 8.653338 GTTAAAGTTGCTTCTATATGTGTTCGA 58.347 33.333 0.00 0.00 0.00 3.71
729 794 6.893958 AAGTTGCTTCTATATGTGTTCGAG 57.106 37.500 0.00 0.00 0.00 4.04
730 795 5.967088 AGTTGCTTCTATATGTGTTCGAGT 58.033 37.500 0.00 0.00 0.00 4.18
731 796 5.807520 AGTTGCTTCTATATGTGTTCGAGTG 59.192 40.000 0.00 0.00 0.00 3.51
732 797 5.576447 TGCTTCTATATGTGTTCGAGTGA 57.424 39.130 0.00 0.00 0.00 3.41
733 798 5.582550 TGCTTCTATATGTGTTCGAGTGAG 58.417 41.667 0.00 0.00 0.00 3.51
734 799 4.442733 GCTTCTATATGTGTTCGAGTGAGC 59.557 45.833 0.00 0.00 0.00 4.26
735 800 4.210832 TCTATATGTGTTCGAGTGAGCG 57.789 45.455 0.00 0.00 0.00 5.03
736 801 2.941453 ATATGTGTTCGAGTGAGCGT 57.059 45.000 0.00 0.00 0.00 5.07
737 802 2.257974 TATGTGTTCGAGTGAGCGTC 57.742 50.000 0.00 0.00 0.00 5.19
738 803 0.729478 ATGTGTTCGAGTGAGCGTCG 60.729 55.000 0.00 0.00 38.84 5.12
739 804 2.081212 GTGTTCGAGTGAGCGTCGG 61.081 63.158 0.00 0.00 38.02 4.79
740 805 2.255881 TGTTCGAGTGAGCGTCGGA 61.256 57.895 0.00 0.00 38.02 4.55
741 806 1.136984 GTTCGAGTGAGCGTCGGAT 59.863 57.895 0.00 0.00 38.02 4.18
742 807 0.376152 GTTCGAGTGAGCGTCGGATA 59.624 55.000 0.00 0.00 38.02 2.59
743 808 1.002684 GTTCGAGTGAGCGTCGGATAT 60.003 52.381 0.00 0.00 38.02 1.63
744 809 2.159327 TCGAGTGAGCGTCGGATATA 57.841 50.000 0.00 0.00 38.02 0.86
745 810 1.797046 TCGAGTGAGCGTCGGATATAC 59.203 52.381 0.00 0.00 38.02 1.47
746 811 1.136029 CGAGTGAGCGTCGGATATACC 60.136 57.143 0.00 0.00 33.66 2.73
747 812 2.152830 GAGTGAGCGTCGGATATACCT 58.847 52.381 0.00 0.00 36.31 3.08
748 813 2.553172 GAGTGAGCGTCGGATATACCTT 59.447 50.000 0.00 0.00 36.31 3.50
749 814 2.957006 AGTGAGCGTCGGATATACCTTT 59.043 45.455 0.00 0.00 36.31 3.11
750 815 3.050619 GTGAGCGTCGGATATACCTTTG 58.949 50.000 0.00 0.00 36.31 2.77
791 862 2.270986 AAGCGAAAGGCCTGGCTTG 61.271 57.895 28.32 13.46 43.53 4.01
864 935 1.201880 GCGAGAACGGGAAGAAGTAGT 59.798 52.381 0.00 0.00 40.15 2.73
990 1061 2.499685 GCGAGGGACGGCAATAGT 59.500 61.111 0.00 0.00 42.83 2.12
1025 1096 2.285668 TGGGGAAGGAGAGGCAGG 60.286 66.667 0.00 0.00 0.00 4.85
1302 1373 2.090831 TGTATTGGGATTGGGATTGGGG 60.091 50.000 0.00 0.00 0.00 4.96
1433 1504 4.114997 GGGGACGTGCAAATGCGG 62.115 66.667 9.96 0.00 45.83 5.69
1493 1565 4.682563 AGAAGATCTTGGAGAGTTGGAGA 58.317 43.478 14.00 0.00 0.00 3.71
1581 1653 0.109132 GCTGGGTTTGGCTGATTTCG 60.109 55.000 0.00 0.00 0.00 3.46
1585 1657 2.039216 TGGGTTTGGCTGATTTCGTCTA 59.961 45.455 0.00 0.00 0.00 2.59
1586 1658 3.279434 GGGTTTGGCTGATTTCGTCTAT 58.721 45.455 0.00 0.00 0.00 1.98
1587 1659 3.065371 GGGTTTGGCTGATTTCGTCTATG 59.935 47.826 0.00 0.00 0.00 2.23
1588 1660 3.938963 GGTTTGGCTGATTTCGTCTATGA 59.061 43.478 0.00 0.00 0.00 2.15
1589 1661 4.034510 GGTTTGGCTGATTTCGTCTATGAG 59.965 45.833 0.00 0.00 0.00 2.90
1628 1704 2.275318 GCTGGTGCTATTGTCTGACTC 58.725 52.381 9.51 0.00 36.03 3.36
1632 1708 3.834813 TGGTGCTATTGTCTGACTCTTCT 59.165 43.478 9.51 0.00 0.00 2.85
1633 1709 4.284490 TGGTGCTATTGTCTGACTCTTCTT 59.716 41.667 9.51 0.00 0.00 2.52
1849 1925 1.202463 CCTGTTGGGCGTGAGATCTAG 60.202 57.143 0.00 0.00 0.00 2.43
1883 1959 4.844349 AGTAGGATAACATGTGCACCTT 57.156 40.909 15.69 5.58 0.00 3.50
1983 2315 3.624326 TTTCACTCAAGCAATGAACGG 57.376 42.857 0.00 0.00 37.67 4.44
2031 2365 4.158949 TCTCAATTGAATCAATGTGCCCAG 59.841 41.667 9.47 4.74 34.04 4.45
2062 2396 3.415457 TGATGTGTCACTGCCATAACA 57.585 42.857 4.27 0.00 0.00 2.41
2065 2399 3.415457 TGTGTCACTGCCATAACATCA 57.585 42.857 4.27 0.00 0.00 3.07
2066 2400 3.749226 TGTGTCACTGCCATAACATCAA 58.251 40.909 4.27 0.00 0.00 2.57
2067 2401 4.334552 TGTGTCACTGCCATAACATCAAT 58.665 39.130 4.27 0.00 0.00 2.57
2093 2427 1.301716 CCACTGTGACAACCCTCCG 60.302 63.158 9.86 0.00 0.00 4.63
2169 2503 0.179004 TGGCGTCCAATTGACAAGGT 60.179 50.000 7.12 0.00 44.71 3.50
2214 2548 3.136763 CGATGCCATATGCTTTCTGAGT 58.863 45.455 0.00 0.00 42.00 3.41
2277 2611 0.105913 AGGGGCGTGGAAAGGAAAAA 60.106 50.000 0.00 0.00 0.00 1.94
2326 2660 6.536941 GCCTTCTTCCTTGAACTATGTAGAAG 59.463 42.308 0.00 0.00 37.92 2.85
2328 2662 7.792364 TTCTTCCTTGAACTATGTAGAAGGA 57.208 36.000 0.00 0.00 40.34 3.36
2348 2682 1.228459 GTGGGAAGGAAAAGCGGGT 60.228 57.895 0.00 0.00 0.00 5.28
2570 2907 1.488393 CCCAGCTTTTCCTCTCCCTAG 59.512 57.143 0.00 0.00 0.00 3.02
2678 3015 0.041833 CTTCTCCTCTCCCTCCCACA 59.958 60.000 0.00 0.00 0.00 4.17
2698 3035 1.734655 AGTCCTCTCCAGCTTTTCCA 58.265 50.000 0.00 0.00 0.00 3.53
2721 3058 2.491693 TCCCTACCGTTACAAGGTTACG 59.508 50.000 1.39 1.39 42.81 3.18
2781 3118 7.066284 CACCATCTAGGAAGGTTACAATCAAAG 59.934 40.741 0.00 0.00 41.22 2.77
2854 3191 5.956642 AGTAGTGCAAGCTAGTTAAGAGAC 58.043 41.667 0.00 0.00 0.00 3.36
2858 3195 6.292150 AGTGCAAGCTAGTTAAGAGACTTTT 58.708 36.000 0.00 0.00 0.00 2.27
2880 3217 1.913722 CAGAGAGAATGGCTGGCCT 59.086 57.895 13.05 0.00 36.94 5.19
2931 3268 4.590850 AACCAAAGTCAAGCTTGAATCC 57.409 40.909 29.99 17.95 39.21 3.01
2935 3272 1.731720 AGTCAAGCTTGAATCCGCTC 58.268 50.000 29.99 15.80 39.21 5.03
2936 3273 0.729690 GTCAAGCTTGAATCCGCTCC 59.270 55.000 29.99 11.84 39.21 4.70
2937 3274 0.615331 TCAAGCTTGAATCCGCTCCT 59.385 50.000 26.61 0.00 34.96 3.69
2993 3333 5.432885 AAGTGTTGTTGCTTACATACCAC 57.567 39.130 0.00 0.00 36.44 4.16
3022 3362 5.982516 TGTTGTATTTTGGCATTTGAGTGTC 59.017 36.000 0.00 0.00 0.00 3.67
3145 3485 1.275010 TGTCTATGAAGTCGCCTTGCA 59.725 47.619 0.00 0.00 0.00 4.08
3148 3488 4.119862 GTCTATGAAGTCGCCTTGCAATA 58.880 43.478 0.00 0.00 0.00 1.90
3202 3543 3.008813 TGGGTTGCCACAAAATGCATTAT 59.991 39.130 13.39 0.16 37.33 1.28
3268 3609 4.743151 GTGCCATATGTGCTCATGAAATTG 59.257 41.667 11.46 2.11 35.70 2.32
3269 3610 4.202172 TGCCATATGTGCTCATGAAATTGG 60.202 41.667 11.46 10.51 35.70 3.16
3274 3615 3.489355 TGTGCTCATGAAATTGGAGTGT 58.511 40.909 0.00 0.00 0.00 3.55
3347 3689 6.990341 TCATGATGTCCAAGTGATAACTTG 57.010 37.500 15.27 15.27 44.80 3.16
3390 3732 6.183360 CGTGGAAATGATTTAAGCATGTACCT 60.183 38.462 0.00 0.00 0.00 3.08
3445 3787 6.764308 TTACCGTAGCTGTTTATCTAGTGT 57.236 37.500 0.00 0.00 0.00 3.55
3802 4152 3.555966 AGCCCAGCAGTTATTCATAACC 58.444 45.455 6.14 0.00 42.71 2.85
3803 4153 3.203040 AGCCCAGCAGTTATTCATAACCT 59.797 43.478 6.14 0.00 42.71 3.50
3804 4154 3.316308 GCCCAGCAGTTATTCATAACCTG 59.684 47.826 6.14 7.29 42.71 4.00
3820 4172 7.822658 TCATAACCTGTTGTTTGTTAATAGGC 58.177 34.615 0.00 0.00 39.28 3.93
3909 4264 0.962356 ACACTGCACTATTGGCTGCC 60.962 55.000 12.87 12.87 34.03 4.85
4075 4430 8.883302 TCAGGGAAATGTTCATATGATCATCTA 58.117 33.333 23.29 0.00 34.42 1.98
4167 4522 3.251571 GGTACTGCTACTGTAACACTGC 58.748 50.000 0.00 0.00 0.00 4.40
4229 4584 6.757897 ATCAACTTGTTGTGAACTTCTTGA 57.242 33.333 12.44 0.00 0.00 3.02
4236 4591 4.883585 TGTTGTGAACTTCTTGAGCTTGAT 59.116 37.500 0.00 0.00 0.00 2.57
4246 4601 8.079211 ACTTCTTGAGCTTGATATACACCTTA 57.921 34.615 0.00 0.00 0.00 2.69
4247 4602 8.709308 ACTTCTTGAGCTTGATATACACCTTAT 58.291 33.333 0.00 0.00 0.00 1.73
4333 4688 6.018994 ACAACACGAGCTGTTTTTAAGAGTAG 60.019 38.462 0.00 0.00 41.50 2.57
4334 4689 4.448060 ACACGAGCTGTTTTTAAGAGTAGC 59.552 41.667 0.00 0.00 0.00 3.58
4335 4690 4.447724 CACGAGCTGTTTTTAAGAGTAGCA 59.552 41.667 0.00 0.00 33.81 3.49
4336 4691 4.686554 ACGAGCTGTTTTTAAGAGTAGCAG 59.313 41.667 0.00 0.00 33.81 4.24
4337 4692 4.686554 CGAGCTGTTTTTAAGAGTAGCAGT 59.313 41.667 0.00 0.00 33.81 4.40
4338 4693 5.862323 CGAGCTGTTTTTAAGAGTAGCAGTA 59.138 40.000 0.00 0.00 33.81 2.74
4339 4694 6.365247 CGAGCTGTTTTTAAGAGTAGCAGTAA 59.635 38.462 0.00 0.00 33.81 2.24
4340 4695 7.095774 CGAGCTGTTTTTAAGAGTAGCAGTAAA 60.096 37.037 0.00 0.00 33.81 2.01
4341 4696 8.089115 AGCTGTTTTTAAGAGTAGCAGTAAAG 57.911 34.615 0.00 0.00 33.81 1.85
4342 4697 6.797513 GCTGTTTTTAAGAGTAGCAGTAAAGC 59.202 38.462 0.00 0.00 0.00 3.51
4344 4699 7.861630 TGTTTTTAAGAGTAGCAGTAAAGCTG 58.138 34.615 0.00 0.00 46.11 4.24
4345 4700 7.497909 TGTTTTTAAGAGTAGCAGTAAAGCTGT 59.502 33.333 0.00 0.00 46.11 4.40
4346 4701 8.343366 GTTTTTAAGAGTAGCAGTAAAGCTGTT 58.657 33.333 0.00 0.00 46.11 3.16
4347 4702 8.446599 TTTTAAGAGTAGCAGTAAAGCTGTTT 57.553 30.769 0.00 0.00 46.11 2.83
4348 4703 8.446599 TTTAAGAGTAGCAGTAAAGCTGTTTT 57.553 30.769 0.00 0.00 46.11 2.43
4349 4704 6.944234 AAGAGTAGCAGTAAAGCTGTTTTT 57.056 33.333 0.00 0.00 46.11 1.94
4386 4741 0.325933 TGAGCTGTGCTGCCTTACAT 59.674 50.000 0.00 0.00 39.88 2.29
4636 4991 4.453819 GCTACAAAGAAATGAGCAGACACT 59.546 41.667 0.00 0.00 33.26 3.55
4653 5008 1.002888 CACTGTCCCTGCTCTTGTGAT 59.997 52.381 0.00 0.00 0.00 3.06
4678 5036 4.675510 AGTTGTGATCTTGTTGCAGTTTG 58.324 39.130 0.00 0.00 0.00 2.93
4685 5043 5.978919 TGATCTTGTTGCAGTTTGTTCATTC 59.021 36.000 0.00 0.00 0.00 2.67
4743 5101 0.671472 TTGGCTGCATCACTGAGACG 60.671 55.000 0.50 0.00 0.00 4.18
4754 5112 5.671329 GCATCACTGAGACGTCATTTTTACC 60.671 44.000 19.50 0.00 30.18 2.85
4757 5115 6.751157 TCACTGAGACGTCATTTTTACCTTA 58.249 36.000 19.50 0.00 30.18 2.69
4775 5133 5.243207 ACCTTAACTGTGTTCTTTATCCCG 58.757 41.667 0.00 0.00 0.00 5.14
4831 5189 7.914427 ACTACTTATTCTGGATATGTGGTGA 57.086 36.000 9.32 0.00 38.10 4.02
4878 5236 3.677596 GGTGTGGTTGCCAATTTTAATCG 59.322 43.478 0.00 0.00 34.18 3.34
4883 5241 3.993736 GGTTGCCAATTTTAATCGTGCTT 59.006 39.130 0.00 0.00 0.00 3.91
4912 5278 1.531149 CGTTACTGGAGCAAGGTTGTG 59.469 52.381 0.00 0.00 0.00 3.33
4968 5362 9.101655 GTTACTTTAGTTCTGACAGGTTTGTTA 57.898 33.333 1.81 0.00 37.76 2.41
5056 5450 8.074972 ACGTTTATTACTTTTGCCGTTGATAAA 58.925 29.630 0.00 0.00 0.00 1.40
5092 5486 2.809861 CTTGCCCGCATCACCACTCT 62.810 60.000 0.00 0.00 0.00 3.24
5130 5525 1.807814 AAGAGAACCCCATCGCCTAT 58.192 50.000 0.00 0.00 0.00 2.57
5134 5529 1.843851 AGAACCCCATCGCCTATGAAA 59.156 47.619 0.00 0.00 37.86 2.69
5160 5559 5.779922 ACTTTCATCAAGAGTACGCTACAA 58.220 37.500 0.00 0.00 36.21 2.41
5161 5560 5.864474 ACTTTCATCAAGAGTACGCTACAAG 59.136 40.000 0.00 0.00 36.21 3.16
5162 5561 4.371855 TCATCAAGAGTACGCTACAAGG 57.628 45.455 0.00 0.00 0.00 3.61
5163 5562 4.014406 TCATCAAGAGTACGCTACAAGGA 58.986 43.478 0.00 0.00 0.00 3.36
5164 5563 3.844577 TCAAGAGTACGCTACAAGGAC 57.155 47.619 0.00 0.00 0.00 3.85
5165 5564 2.161012 TCAAGAGTACGCTACAAGGACG 59.839 50.000 0.00 0.00 0.00 4.79
5166 5565 2.105006 AGAGTACGCTACAAGGACGA 57.895 50.000 0.00 0.00 0.00 4.20
5167 5566 2.430465 AGAGTACGCTACAAGGACGAA 58.570 47.619 0.00 0.00 0.00 3.85
5168 5567 2.816087 AGAGTACGCTACAAGGACGAAA 59.184 45.455 0.00 0.00 0.00 3.46
5169 5568 3.119919 AGAGTACGCTACAAGGACGAAAG 60.120 47.826 0.00 0.00 0.00 2.62
5170 5569 2.094854 AGTACGCTACAAGGACGAAAGG 60.095 50.000 0.00 0.00 0.00 3.11
5171 5570 0.677842 ACGCTACAAGGACGAAAGGT 59.322 50.000 0.00 0.00 0.00 3.50
5172 5571 1.068474 CGCTACAAGGACGAAAGGTG 58.932 55.000 0.00 0.00 0.00 4.00
5173 5572 1.336517 CGCTACAAGGACGAAAGGTGA 60.337 52.381 0.00 0.00 0.00 4.02
5174 5573 2.762745 GCTACAAGGACGAAAGGTGAA 58.237 47.619 0.00 0.00 0.00 3.18
5175 5574 2.479275 GCTACAAGGACGAAAGGTGAAC 59.521 50.000 0.00 0.00 0.00 3.18
5176 5575 1.578583 ACAAGGACGAAAGGTGAACG 58.421 50.000 0.00 0.00 0.00 3.95
5177 5576 1.137479 ACAAGGACGAAAGGTGAACGA 59.863 47.619 0.00 0.00 0.00 3.85
5178 5577 2.206750 CAAGGACGAAAGGTGAACGAA 58.793 47.619 0.00 0.00 0.00 3.85
5179 5578 2.607631 AGGACGAAAGGTGAACGAAA 57.392 45.000 0.00 0.00 0.00 3.46
5180 5579 2.480845 AGGACGAAAGGTGAACGAAAG 58.519 47.619 0.00 0.00 0.00 2.62
5197 5596 6.342338 ACGAAAGTACCTTTCTACATCTGT 57.658 37.500 13.19 1.74 45.19 3.41
5198 5597 6.157211 ACGAAAGTACCTTTCTACATCTGTG 58.843 40.000 13.19 0.10 45.19 3.66
5199 5598 5.062308 CGAAAGTACCTTTCTACATCTGTGC 59.938 44.000 13.19 0.00 45.19 4.57
5200 5599 5.746990 AAGTACCTTTCTACATCTGTGCT 57.253 39.130 0.00 0.00 0.00 4.40
5201 5600 5.331876 AGTACCTTTCTACATCTGTGCTC 57.668 43.478 0.00 0.00 0.00 4.26
5202 5601 4.772624 AGTACCTTTCTACATCTGTGCTCA 59.227 41.667 0.00 0.00 0.00 4.26
5203 5602 4.833478 ACCTTTCTACATCTGTGCTCAT 57.167 40.909 0.00 0.00 0.00 2.90
5204 5603 5.939764 ACCTTTCTACATCTGTGCTCATA 57.060 39.130 0.00 0.00 0.00 2.15
5205 5604 6.491714 ACCTTTCTACATCTGTGCTCATAT 57.508 37.500 0.00 0.00 0.00 1.78
5206 5605 6.520272 ACCTTTCTACATCTGTGCTCATATC 58.480 40.000 0.00 0.00 0.00 1.63
5207 5606 5.931146 CCTTTCTACATCTGTGCTCATATCC 59.069 44.000 0.00 0.00 0.00 2.59
5208 5607 6.239543 CCTTTCTACATCTGTGCTCATATCCT 60.240 42.308 0.00 0.00 0.00 3.24
5209 5608 5.718724 TCTACATCTGTGCTCATATCCTG 57.281 43.478 0.00 0.00 0.00 3.86
5210 5609 3.766068 ACATCTGTGCTCATATCCTGG 57.234 47.619 0.00 0.00 0.00 4.45
5211 5610 3.044156 ACATCTGTGCTCATATCCTGGT 58.956 45.455 0.00 0.00 0.00 4.00
5212 5611 3.181457 ACATCTGTGCTCATATCCTGGTG 60.181 47.826 0.00 0.00 0.00 4.17
5213 5612 2.470990 TCTGTGCTCATATCCTGGTGT 58.529 47.619 0.00 0.00 0.00 4.16
5214 5613 2.169144 TCTGTGCTCATATCCTGGTGTG 59.831 50.000 0.00 0.00 0.00 3.82
5215 5614 2.169144 CTGTGCTCATATCCTGGTGTGA 59.831 50.000 0.00 0.00 0.00 3.58
5216 5615 2.571202 TGTGCTCATATCCTGGTGTGAA 59.429 45.455 0.00 0.00 0.00 3.18
5217 5616 2.939103 GTGCTCATATCCTGGTGTGAAC 59.061 50.000 0.00 0.00 0.00 3.18
5218 5617 2.571202 TGCTCATATCCTGGTGTGAACA 59.429 45.455 0.00 0.00 0.00 3.18
5219 5618 3.008923 TGCTCATATCCTGGTGTGAACAA 59.991 43.478 0.00 0.00 0.00 2.83
5220 5619 4.202441 GCTCATATCCTGGTGTGAACAAT 58.798 43.478 0.00 0.00 0.00 2.71
5221 5620 5.104569 TGCTCATATCCTGGTGTGAACAATA 60.105 40.000 0.00 0.00 0.00 1.90
5222 5621 5.822519 GCTCATATCCTGGTGTGAACAATAA 59.177 40.000 0.00 0.00 0.00 1.40
5223 5622 6.318648 GCTCATATCCTGGTGTGAACAATAAA 59.681 38.462 0.00 0.00 0.00 1.40
5224 5623 7.148086 GCTCATATCCTGGTGTGAACAATAAAA 60.148 37.037 0.00 0.00 0.00 1.52
5225 5624 8.821686 TCATATCCTGGTGTGAACAATAAAAT 57.178 30.769 0.00 0.00 0.00 1.82
5226 5625 9.913310 TCATATCCTGGTGTGAACAATAAAATA 57.087 29.630 0.00 0.00 0.00 1.40
5290 5689 9.606631 TTTTGGCATACTTTAAGAAATGTTTGT 57.393 25.926 0.00 0.00 29.91 2.83
5291 5690 9.606631 TTTGGCATACTTTAAGAAATGTTTGTT 57.393 25.926 0.00 0.00 29.91 2.83
5292 5691 8.586570 TGGCATACTTTAAGAAATGTTTGTTG 57.413 30.769 0.00 0.00 29.91 3.33
5293 5692 8.200792 TGGCATACTTTAAGAAATGTTTGTTGT 58.799 29.630 0.00 0.00 29.91 3.32
5294 5693 8.487176 GGCATACTTTAAGAAATGTTTGTTGTG 58.513 33.333 0.00 0.00 29.91 3.33
5295 5694 8.003784 GCATACTTTAAGAAATGTTTGTTGTGC 58.996 33.333 0.00 0.00 29.91 4.57
5296 5695 9.029243 CATACTTTAAGAAATGTTTGTTGTGCA 57.971 29.630 0.00 0.00 0.00 4.57
5297 5696 9.762933 ATACTTTAAGAAATGTTTGTTGTGCAT 57.237 25.926 0.00 0.00 0.00 3.96
5298 5697 7.908230 ACTTTAAGAAATGTTTGTTGTGCATG 58.092 30.769 0.00 0.00 0.00 4.06
5299 5698 7.548780 ACTTTAAGAAATGTTTGTTGTGCATGT 59.451 29.630 0.00 0.00 0.00 3.21
5300 5699 8.932945 TTTAAGAAATGTTTGTTGTGCATGTA 57.067 26.923 0.00 0.00 0.00 2.29
5301 5700 8.932945 TTAAGAAATGTTTGTTGTGCATGTAA 57.067 26.923 0.00 0.00 0.00 2.41
5302 5701 7.840342 AAGAAATGTTTGTTGTGCATGTAAA 57.160 28.000 0.00 0.00 0.00 2.01
5303 5702 7.840342 AGAAATGTTTGTTGTGCATGTAAAA 57.160 28.000 0.00 0.00 0.00 1.52
5304 5703 8.436046 AGAAATGTTTGTTGTGCATGTAAAAT 57.564 26.923 0.00 0.00 0.00 1.82
5305 5704 8.891720 AGAAATGTTTGTTGTGCATGTAAAATT 58.108 25.926 0.00 0.00 0.00 1.82
5306 5705 9.500864 GAAATGTTTGTTGTGCATGTAAAATTT 57.499 25.926 0.00 0.00 0.00 1.82
5307 5706 9.500864 AAATGTTTGTTGTGCATGTAAAATTTC 57.499 25.926 0.00 0.00 0.00 2.17
5308 5707 7.601073 TGTTTGTTGTGCATGTAAAATTTCA 57.399 28.000 0.00 0.00 0.00 2.69
5309 5708 8.206325 TGTTTGTTGTGCATGTAAAATTTCAT 57.794 26.923 0.00 0.00 0.00 2.57
5310 5709 8.333908 TGTTTGTTGTGCATGTAAAATTTCATC 58.666 29.630 0.00 0.00 0.00 2.92
5311 5710 8.333908 GTTTGTTGTGCATGTAAAATTTCATCA 58.666 29.630 0.00 0.00 0.00 3.07
5312 5711 8.604640 TTGTTGTGCATGTAAAATTTCATCAT 57.395 26.923 0.00 0.00 0.00 2.45
5313 5712 8.019769 TGTTGTGCATGTAAAATTTCATCATG 57.980 30.769 17.85 17.85 38.87 3.07
5314 5713 7.871463 TGTTGTGCATGTAAAATTTCATCATGA 59.129 29.630 22.55 0.00 38.35 3.07
5315 5714 8.710551 GTTGTGCATGTAAAATTTCATCATGAA 58.289 29.630 22.55 15.27 38.35 2.57
5328 5727 6.837471 TTCATCATGAAATCACATTGGTGA 57.163 33.333 0.00 0.00 43.77 4.02
5329 5728 7.229581 TTCATCATGAAATCACATTGGTGAA 57.770 32.000 0.00 6.96 43.30 3.18
5330 5729 7.668492 TTCATCATGAAATCACATTGGTGAAA 58.332 30.769 0.00 0.00 43.30 2.69
5331 5730 7.815549 TTCATCATGAAATCACATTGGTGAAAG 59.184 33.333 0.00 0.00 43.30 2.62
5338 5737 0.951558 ACATTGGTGAAAGTCGTGGC 59.048 50.000 0.00 0.00 0.00 5.01
5339 5738 0.950836 CATTGGTGAAAGTCGTGGCA 59.049 50.000 0.00 0.00 0.00 4.92
5340 5739 1.336440 CATTGGTGAAAGTCGTGGCAA 59.664 47.619 0.00 0.00 0.00 4.52
5341 5740 1.464734 TTGGTGAAAGTCGTGGCAAA 58.535 45.000 0.00 0.00 0.00 3.68
5342 5741 1.464734 TGGTGAAAGTCGTGGCAAAA 58.535 45.000 0.00 0.00 0.00 2.44
5343 5742 1.819288 TGGTGAAAGTCGTGGCAAAAA 59.181 42.857 0.00 0.00 0.00 1.94
5367 5766 9.485206 AAAAGACAAAATGAGATCTCCAAAATG 57.515 29.630 20.03 13.92 0.00 2.32
5368 5767 6.628185 AGACAAAATGAGATCTCCAAAATGC 58.372 36.000 20.03 5.32 0.00 3.56
5369 5768 6.209986 AGACAAAATGAGATCTCCAAAATGCA 59.790 34.615 20.03 0.00 0.00 3.96
5370 5769 6.942976 ACAAAATGAGATCTCCAAAATGCAT 58.057 32.000 20.03 0.00 0.00 3.96
5371 5770 7.391620 ACAAAATGAGATCTCCAAAATGCATT 58.608 30.769 20.03 5.99 0.00 3.56
5372 5771 7.881232 ACAAAATGAGATCTCCAAAATGCATTT 59.119 29.630 18.99 18.99 36.58 2.32
5373 5772 7.843490 AAATGAGATCTCCAAAATGCATTTG 57.157 32.000 24.74 17.35 46.54 2.32
5391 5790 8.883954 TGCATTTGAATGTAACATTTTTCAGA 57.116 26.923 5.68 0.00 38.65 3.27
5392 5791 8.980610 TGCATTTGAATGTAACATTTTTCAGAG 58.019 29.630 5.68 0.00 38.65 3.35
5393 5792 7.953710 GCATTTGAATGTAACATTTTTCAGAGC 59.046 33.333 5.68 0.00 38.65 4.09
5394 5793 8.980610 CATTTGAATGTAACATTTTTCAGAGCA 58.019 29.630 0.00 0.00 30.45 4.26
5395 5794 9.715121 ATTTGAATGTAACATTTTTCAGAGCAT 57.285 25.926 0.00 0.00 30.45 3.79
5396 5795 9.545105 TTTGAATGTAACATTTTTCAGAGCATT 57.455 25.926 0.00 0.00 30.45 3.56
5397 5796 8.523523 TGAATGTAACATTTTTCAGAGCATTG 57.476 30.769 0.00 0.00 0.00 2.82
5398 5797 8.358895 TGAATGTAACATTTTTCAGAGCATTGA 58.641 29.630 0.00 0.00 0.00 2.57
5399 5798 9.362539 GAATGTAACATTTTTCAGAGCATTGAT 57.637 29.630 0.00 0.00 0.00 2.57
5400 5799 9.715121 AATGTAACATTTTTCAGAGCATTGATT 57.285 25.926 0.00 0.00 0.00 2.57
5401 5800 9.715121 ATGTAACATTTTTCAGAGCATTGATTT 57.285 25.926 0.00 0.00 0.00 2.17
5402 5801 9.545105 TGTAACATTTTTCAGAGCATTGATTTT 57.455 25.926 0.00 0.00 0.00 1.82
5403 5802 9.801714 GTAACATTTTTCAGAGCATTGATTTTG 57.198 29.630 0.00 0.00 0.00 2.44
5404 5803 8.441312 AACATTTTTCAGAGCATTGATTTTGT 57.559 26.923 0.00 0.00 0.00 2.83
5405 5804 8.080083 ACATTTTTCAGAGCATTGATTTTGTC 57.920 30.769 0.00 0.00 0.00 3.18
5406 5805 7.929785 ACATTTTTCAGAGCATTGATTTTGTCT 59.070 29.630 0.00 0.00 0.00 3.41
5407 5806 8.770828 CATTTTTCAGAGCATTGATTTTGTCTT 58.229 29.630 0.00 0.00 0.00 3.01
5408 5807 8.721019 TTTTTCAGAGCATTGATTTTGTCTTT 57.279 26.923 0.00 0.00 0.00 2.52
5409 5808 8.721019 TTTTCAGAGCATTGATTTTGTCTTTT 57.279 26.923 0.00 0.00 0.00 2.27
5410 5809 8.721019 TTTCAGAGCATTGATTTTGTCTTTTT 57.279 26.923 0.00 0.00 0.00 1.94
5427 5826 2.054232 TTTTACCACGCCTTCCAACA 57.946 45.000 0.00 0.00 0.00 3.33
5428 5827 2.054232 TTTACCACGCCTTCCAACAA 57.946 45.000 0.00 0.00 0.00 2.83
5429 5828 2.279935 TTACCACGCCTTCCAACAAT 57.720 45.000 0.00 0.00 0.00 2.71
5430 5829 1.529226 TACCACGCCTTCCAACAATG 58.471 50.000 0.00 0.00 0.00 2.82
5431 5830 0.467290 ACCACGCCTTCCAACAATGT 60.467 50.000 0.00 0.00 0.00 2.71
5432 5831 0.240945 CCACGCCTTCCAACAATGTC 59.759 55.000 0.00 0.00 0.00 3.06
5433 5832 0.950836 CACGCCTTCCAACAATGTCA 59.049 50.000 0.00 0.00 0.00 3.58
5434 5833 1.541147 CACGCCTTCCAACAATGTCAT 59.459 47.619 0.00 0.00 0.00 3.06
5435 5834 2.030007 CACGCCTTCCAACAATGTCATT 60.030 45.455 0.00 0.00 0.00 2.57
5436 5835 2.627699 ACGCCTTCCAACAATGTCATTT 59.372 40.909 0.00 0.00 0.00 2.32
5437 5836 3.244976 CGCCTTCCAACAATGTCATTTC 58.755 45.455 0.00 0.00 0.00 2.17
5438 5837 3.244976 GCCTTCCAACAATGTCATTTCG 58.755 45.455 0.00 0.00 0.00 3.46
5439 5838 3.305335 GCCTTCCAACAATGTCATTTCGT 60.305 43.478 0.00 0.00 0.00 3.85
5440 5839 4.229096 CCTTCCAACAATGTCATTTCGTG 58.771 43.478 0.00 0.00 0.00 4.35
5441 5840 4.023279 CCTTCCAACAATGTCATTTCGTGA 60.023 41.667 0.00 0.00 0.00 4.35
5442 5841 5.335897 CCTTCCAACAATGTCATTTCGTGAT 60.336 40.000 0.00 0.00 39.48 3.06
5443 5842 6.128035 CCTTCCAACAATGTCATTTCGTGATA 60.128 38.462 0.00 0.00 39.48 2.15
5444 5843 6.809630 TCCAACAATGTCATTTCGTGATAA 57.190 33.333 0.00 0.00 39.48 1.75
5445 5844 7.208225 TCCAACAATGTCATTTCGTGATAAA 57.792 32.000 0.00 0.00 39.48 1.40
5446 5845 7.652727 TCCAACAATGTCATTTCGTGATAAAA 58.347 30.769 0.00 0.00 39.48 1.52
5447 5846 8.303156 TCCAACAATGTCATTTCGTGATAAAAT 58.697 29.630 0.00 0.00 39.48 1.82
5448 5847 8.924691 CCAACAATGTCATTTCGTGATAAAATT 58.075 29.630 0.00 0.00 39.48 1.82
5452 5851 9.253275 CAATGTCATTTCGTGATAAAATTTTGC 57.747 29.630 13.76 6.22 39.48 3.68
5453 5852 7.936950 TGTCATTTCGTGATAAAATTTTGCA 57.063 28.000 13.76 8.68 39.48 4.08
5454 5853 8.531622 TGTCATTTCGTGATAAAATTTTGCAT 57.468 26.923 13.76 0.00 39.48 3.96
5455 5854 8.433893 TGTCATTTCGTGATAAAATTTTGCATG 58.566 29.630 13.76 15.09 39.48 4.06
5456 5855 7.423314 GTCATTTCGTGATAAAATTTTGCATGC 59.577 33.333 11.82 11.82 39.48 4.06
5457 5856 6.775939 TTTCGTGATAAAATTTTGCATGCA 57.224 29.167 18.46 18.46 0.00 3.96
5458 5857 5.760193 TCGTGATAAAATTTTGCATGCAC 57.240 34.783 22.58 6.01 0.00 4.57
5459 5858 5.225642 TCGTGATAAAATTTTGCATGCACA 58.774 33.333 22.58 12.14 0.00 4.57
5460 5859 5.693555 TCGTGATAAAATTTTGCATGCACAA 59.306 32.000 22.58 21.53 0.00 3.33
5461 5860 5.784625 CGTGATAAAATTTTGCATGCACAAC 59.215 36.000 22.58 7.74 0.00 3.32
5462 5861 6.563567 CGTGATAAAATTTTGCATGCACAACA 60.564 34.615 22.58 10.39 0.00 3.33
5463 5862 7.130917 GTGATAAAATTTTGCATGCACAACAA 58.869 30.769 22.58 9.42 0.00 2.83
5464 5863 7.642978 GTGATAAAATTTTGCATGCACAACAAA 59.357 29.630 22.58 18.36 0.00 2.83
5465 5864 8.350722 TGATAAAATTTTGCATGCACAACAAAT 58.649 25.926 22.58 19.81 33.62 2.32
5466 5865 9.823098 GATAAAATTTTGCATGCACAACAAATA 57.177 25.926 22.58 11.91 33.62 1.40
5469 5868 9.530633 AAAATTTTGCATGCACAACAAATATTT 57.469 22.222 22.58 19.30 33.62 1.40
5470 5869 8.730970 AATTTTGCATGCACAACAAATATTTC 57.269 26.923 22.58 0.00 33.62 2.17
5471 5870 7.493743 TTTTGCATGCACAACAAATATTTCT 57.506 28.000 22.58 0.00 33.62 2.52
5472 5871 7.493743 TTTGCATGCACAACAAATATTTCTT 57.506 28.000 22.58 0.00 0.00 2.52
5473 5872 8.599055 TTTGCATGCACAACAAATATTTCTTA 57.401 26.923 22.58 0.00 0.00 2.10
5474 5873 8.599055 TTGCATGCACAACAAATATTTCTTAA 57.401 26.923 22.58 0.00 0.00 1.85
5475 5874 8.599055 TGCATGCACAACAAATATTTCTTAAA 57.401 26.923 18.46 0.00 0.00 1.52
5476 5875 8.710551 TGCATGCACAACAAATATTTCTTAAAG 58.289 29.630 18.46 0.00 0.00 1.85
5477 5876 8.711457 GCATGCACAACAAATATTTCTTAAAGT 58.289 29.630 14.21 0.00 0.00 2.66
5499 5898 9.995003 AAAGTATGCCACAAAAATAATTCAGAA 57.005 25.926 0.00 0.00 0.00 3.02
5548 5947 9.575868 TTATTTATTTTACTGTTCACACCAGGA 57.424 29.630 0.00 0.00 34.16 3.86
5549 5948 7.504924 TTTATTTTACTGTTCACACCAGGAG 57.495 36.000 0.00 0.00 34.16 3.69
5550 5949 2.543777 TTACTGTTCACACCAGGAGC 57.456 50.000 0.00 0.00 34.16 4.70
5551 5950 1.419381 TACTGTTCACACCAGGAGCA 58.581 50.000 0.00 0.00 34.16 4.26
5552 5951 0.767375 ACTGTTCACACCAGGAGCAT 59.233 50.000 0.00 0.00 34.16 3.79
5553 5952 1.977854 ACTGTTCACACCAGGAGCATA 59.022 47.619 0.00 0.00 34.16 3.14
5554 5953 2.573462 ACTGTTCACACCAGGAGCATAT 59.427 45.455 0.00 0.00 34.16 1.78
5555 5954 2.941064 CTGTTCACACCAGGAGCATATG 59.059 50.000 0.00 0.00 0.00 1.78
5556 5955 2.571202 TGTTCACACCAGGAGCATATGA 59.429 45.455 6.97 0.00 0.00 2.15
5557 5956 3.008923 TGTTCACACCAGGAGCATATGAA 59.991 43.478 6.97 0.00 0.00 2.57
5558 5957 3.998913 TCACACCAGGAGCATATGAAA 57.001 42.857 6.97 0.00 0.00 2.69
5559 5958 4.508551 TCACACCAGGAGCATATGAAAT 57.491 40.909 6.97 0.00 0.00 2.17
5560 5959 4.201657 TCACACCAGGAGCATATGAAATG 58.798 43.478 6.97 0.00 0.00 2.32
5561 5960 3.949754 CACACCAGGAGCATATGAAATGT 59.050 43.478 6.97 0.00 0.00 2.71
5562 5961 5.104569 TCACACCAGGAGCATATGAAATGTA 60.105 40.000 6.97 0.00 0.00 2.29
5563 5962 5.766670 CACACCAGGAGCATATGAAATGTAT 59.233 40.000 6.97 0.00 0.00 2.29
5564 5963 6.263842 CACACCAGGAGCATATGAAATGTATT 59.736 38.462 6.97 0.00 0.00 1.89
5565 5964 6.835488 ACACCAGGAGCATATGAAATGTATTT 59.165 34.615 6.97 0.00 0.00 1.40
5566 5965 7.342799 ACACCAGGAGCATATGAAATGTATTTT 59.657 33.333 6.97 0.00 0.00 1.82
5567 5966 8.199449 CACCAGGAGCATATGAAATGTATTTTT 58.801 33.333 6.97 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.206829 GGGTTGGGTATTATCTTGACAATAGC 59.793 42.308 3.16 3.16 0.00 2.97
178 179 1.599071 CAGAGTTTCTGCGTGCTTCAA 59.401 47.619 0.00 0.00 37.72 2.69
196 197 0.617413 AAGCAGTCATCACCTCCCAG 59.383 55.000 0.00 0.00 0.00 4.45
290 291 6.318144 CCATGCTCAGACACAATATTTTCTCT 59.682 38.462 0.00 0.00 0.00 3.10
292 293 6.182627 TCCATGCTCAGACACAATATTTTCT 58.817 36.000 0.00 0.00 0.00 2.52
299 300 3.681034 GCTACTCCATGCTCAGACACAAT 60.681 47.826 0.00 0.00 0.00 2.71
305 306 2.021068 GCCGCTACTCCATGCTCAGA 62.021 60.000 0.00 0.00 0.00 3.27
356 357 3.317711 TGAGTTTTCCAATCACGCATGTT 59.682 39.130 0.00 0.00 0.00 2.71
557 590 6.685116 GCTGGCTGCCCAATTTTACATTAATA 60.685 38.462 17.53 0.00 41.58 0.98
560 593 3.118811 GCTGGCTGCCCAATTTTACATTA 60.119 43.478 17.53 0.00 41.58 1.90
607 665 2.213499 GATATAAGTTGGCAGCACGCT 58.787 47.619 3.63 0.00 41.91 5.07
618 676 9.240159 GTGTCCGTTTTGTTTTTGATATAAGTT 57.760 29.630 0.00 0.00 0.00 2.66
621 679 6.856938 CGGTGTCCGTTTTGTTTTTGATATAA 59.143 34.615 0.00 0.00 42.73 0.98
622 680 6.372185 CGGTGTCCGTTTTGTTTTTGATATA 58.628 36.000 0.00 0.00 42.73 0.86
645 704 0.953471 TTTGGATTGGTCGTCTGCCG 60.953 55.000 0.00 0.00 38.13 5.69
649 708 8.801882 TTTTTATCTATTTGGATTGGTCGTCT 57.198 30.769 0.00 0.00 0.00 4.18
665 724 7.009815 ACGACGATTTCATTCGCTTTTTATCTA 59.990 33.333 0.00 0.00 42.82 1.98
702 767 8.653338 TCGAACACATATAGAAGCAACTTTAAC 58.347 33.333 0.00 0.00 0.00 2.01
706 771 6.311445 CACTCGAACACATATAGAAGCAACTT 59.689 38.462 0.00 0.00 0.00 2.66
714 779 3.626217 ACGCTCACTCGAACACATATAGA 59.374 43.478 0.00 0.00 0.00 1.98
715 780 3.953766 ACGCTCACTCGAACACATATAG 58.046 45.455 0.00 0.00 0.00 1.31
716 781 3.545426 CGACGCTCACTCGAACACATATA 60.545 47.826 0.00 0.00 32.65 0.86
717 782 2.791503 CGACGCTCACTCGAACACATAT 60.792 50.000 0.00 0.00 32.65 1.78
718 783 1.465187 CGACGCTCACTCGAACACATA 60.465 52.381 0.00 0.00 32.65 2.29
719 784 0.729478 CGACGCTCACTCGAACACAT 60.729 55.000 0.00 0.00 32.65 3.21
720 785 1.370051 CGACGCTCACTCGAACACA 60.370 57.895 0.00 0.00 32.65 3.72
721 786 2.081212 CCGACGCTCACTCGAACAC 61.081 63.158 0.00 0.00 32.65 3.32
722 787 1.583495 ATCCGACGCTCACTCGAACA 61.583 55.000 0.00 0.00 32.65 3.18
723 788 0.376152 TATCCGACGCTCACTCGAAC 59.624 55.000 0.00 0.00 32.65 3.95
724 789 1.306148 ATATCCGACGCTCACTCGAA 58.694 50.000 0.00 0.00 32.65 3.71
725 790 1.797046 GTATATCCGACGCTCACTCGA 59.203 52.381 0.00 0.00 32.65 4.04
726 791 1.136029 GGTATATCCGACGCTCACTCG 60.136 57.143 0.00 0.00 0.00 4.18
727 792 2.152830 AGGTATATCCGACGCTCACTC 58.847 52.381 0.00 0.00 41.99 3.51
728 793 2.273538 AGGTATATCCGACGCTCACT 57.726 50.000 0.00 0.00 41.99 3.41
729 794 3.050619 CAAAGGTATATCCGACGCTCAC 58.949 50.000 0.00 0.00 41.99 3.51
730 795 2.035449 CCAAAGGTATATCCGACGCTCA 59.965 50.000 0.00 0.00 41.99 4.26
731 796 2.035576 ACCAAAGGTATATCCGACGCTC 59.964 50.000 0.00 0.00 41.99 5.03
732 797 2.037144 ACCAAAGGTATATCCGACGCT 58.963 47.619 0.00 0.00 41.99 5.07
733 798 2.521105 ACCAAAGGTATATCCGACGC 57.479 50.000 0.00 0.00 41.99 5.19
734 799 2.542595 GCAACCAAAGGTATATCCGACG 59.457 50.000 0.00 0.00 41.99 5.12
735 800 3.537580 TGCAACCAAAGGTATATCCGAC 58.462 45.455 0.00 0.00 41.99 4.79
736 801 3.916359 TGCAACCAAAGGTATATCCGA 57.084 42.857 0.00 0.00 41.99 4.55
737 802 3.945285 AGTTGCAACCAAAGGTATATCCG 59.055 43.478 25.62 0.00 41.99 4.18
738 803 5.650543 CAAGTTGCAACCAAAGGTATATCC 58.349 41.667 25.62 0.00 33.12 2.59
739 804 5.102313 GCAAGTTGCAACCAAAGGTATATC 58.898 41.667 25.62 0.00 44.26 1.63
740 805 5.072040 GCAAGTTGCAACCAAAGGTATAT 57.928 39.130 25.62 0.05 44.26 0.86
741 806 4.513198 GCAAGTTGCAACCAAAGGTATA 57.487 40.909 25.62 0.00 44.26 1.47
742 807 3.385193 GCAAGTTGCAACCAAAGGTAT 57.615 42.857 25.62 1.63 44.26 2.73
743 808 2.880963 GCAAGTTGCAACCAAAGGTA 57.119 45.000 25.62 0.00 44.26 3.08
744 809 3.758715 GCAAGTTGCAACCAAAGGT 57.241 47.368 25.62 3.24 44.26 3.50
791 862 4.043100 GGGTGGGTGGTGGGCTAC 62.043 72.222 0.00 0.00 0.00 3.58
990 1061 4.802051 GCGCCCATCCTCCAAGCA 62.802 66.667 0.00 0.00 0.00 3.91
1025 1096 0.392327 GCTCTTCTCCTTGCTCCCAC 60.392 60.000 0.00 0.00 0.00 4.61
1205 1276 2.770164 ACAAGATTGGAAGAGACGGG 57.230 50.000 0.00 0.00 0.00 5.28
1207 1278 6.256757 GGATTAGAACAAGATTGGAAGAGACG 59.743 42.308 0.00 0.00 0.00 4.18
1302 1373 5.615925 ACTGAGATAGATACAACCCCAAC 57.384 43.478 0.00 0.00 0.00 3.77
1493 1565 1.329256 CATAGCTACCTACCCACGCT 58.671 55.000 0.00 0.00 34.88 5.07
1581 1653 7.065563 AGCAACATGTTTTCTCATCTCATAGAC 59.934 37.037 8.77 0.00 0.00 2.59
1585 1657 5.621555 GCAGCAACATGTTTTCTCATCTCAT 60.622 40.000 8.77 0.00 0.00 2.90
1586 1658 4.320714 GCAGCAACATGTTTTCTCATCTCA 60.321 41.667 8.77 0.00 0.00 3.27
1587 1659 4.082895 AGCAGCAACATGTTTTCTCATCTC 60.083 41.667 8.77 0.00 0.00 2.75
1588 1660 3.825014 AGCAGCAACATGTTTTCTCATCT 59.175 39.130 8.77 3.69 0.00 2.90
1589 1661 3.918591 CAGCAGCAACATGTTTTCTCATC 59.081 43.478 8.77 1.63 0.00 2.92
1812 1888 5.104776 CCAACAGGGTGATCTCTTCTCATAA 60.105 44.000 0.00 0.00 0.00 1.90
1817 1893 1.912043 CCCAACAGGGTGATCTCTTCT 59.088 52.381 0.00 0.00 37.83 2.85
1849 1925 6.759272 TGTTATCCTACTTGTGAGGCATATC 58.241 40.000 0.00 0.00 33.73 1.63
1883 1959 6.003326 TCACAATTTCAGCAATCAGGTAAGA 58.997 36.000 0.00 0.00 0.00 2.10
1983 2315 2.686405 TGGCAGAAGCATGATCAATCAC 59.314 45.455 0.00 0.00 44.61 3.06
2031 2365 5.505286 CAGTGACACATCAACAGAAAACTC 58.495 41.667 8.59 0.00 36.31 3.01
2062 2396 9.120538 GGTTGTCACAGTGGTATTATTATTGAT 57.879 33.333 0.00 0.00 0.00 2.57
2065 2399 7.639378 AGGGTTGTCACAGTGGTATTATTATT 58.361 34.615 0.00 0.00 0.00 1.40
2066 2400 7.208064 AGGGTTGTCACAGTGGTATTATTAT 57.792 36.000 0.00 0.00 0.00 1.28
2067 2401 6.352394 GGAGGGTTGTCACAGTGGTATTATTA 60.352 42.308 0.00 0.00 0.00 0.98
2093 2427 0.251341 AGGGTCAATGTGCTTGGTCC 60.251 55.000 0.00 0.00 35.43 4.46
2177 2511 3.366719 GCATCGAAAATCAGCTTAAGGC 58.633 45.455 4.29 0.00 42.19 4.35
2214 2548 1.534476 TCCTTCCCGTGTGTGCCTA 60.534 57.895 0.00 0.00 0.00 3.93
2252 2586 2.754664 CTTTCCACGCCCCTGCTTCT 62.755 60.000 0.00 0.00 34.43 2.85
2253 2587 2.282180 TTTCCACGCCCCTGCTTC 60.282 61.111 0.00 0.00 34.43 3.86
2277 2611 1.573857 AGGTTTCCTTCCCCACTGTTT 59.426 47.619 0.00 0.00 0.00 2.83
2278 2612 1.231963 AGGTTTCCTTCCCCACTGTT 58.768 50.000 0.00 0.00 0.00 3.16
2279 2613 1.133482 CAAGGTTTCCTTCCCCACTGT 60.133 52.381 0.00 0.00 42.67 3.55
2288 2622 0.860457 AGAAGGCCCAAGGTTTCCTT 59.140 50.000 0.00 4.80 45.88 3.36
2291 2625 1.203063 AGGAAGAAGGCCCAAGGTTTC 60.203 52.381 0.00 0.00 0.00 2.78
2326 2660 0.960861 CGCTTTTCCTTCCCACCTCC 60.961 60.000 0.00 0.00 0.00 4.30
2328 2662 1.074951 CCGCTTTTCCTTCCCACCT 59.925 57.895 0.00 0.00 0.00 4.00
2348 2682 1.429299 TGTTCTGTCCCTCTCTCCTCA 59.571 52.381 0.00 0.00 0.00 3.86
2570 2907 0.177836 GAGCTGAAGAAGAGGGAGGC 59.822 60.000 0.00 0.00 0.00 4.70
2596 2933 2.564504 ACATACAGCAGAACAGAGCAGA 59.435 45.455 0.00 0.00 0.00 4.26
2636 2973 2.700371 TGGCAGAGACTCAAACAGAAGA 59.300 45.455 5.02 0.00 0.00 2.87
2637 2974 3.065655 CTGGCAGAGACTCAAACAGAAG 58.934 50.000 9.42 0.00 0.00 2.85
2638 2975 2.808202 GCTGGCAGAGACTCAAACAGAA 60.808 50.000 20.86 0.00 0.00 3.02
2678 3015 2.057922 TGGAAAAGCTGGAGAGGACTT 58.942 47.619 0.00 0.00 0.00 3.01
2698 3035 2.315720 ACCTTGTAACGGTAGGGAGT 57.684 50.000 0.14 0.00 33.22 3.85
2721 3058 5.391312 AGGTTGTCCAAGCATTTTATCAC 57.609 39.130 11.36 0.00 40.96 3.06
2854 3191 3.345414 AGCCATTCTCTCTGCTGAAAAG 58.655 45.455 0.00 0.00 31.70 2.27
2880 3217 5.222048 ACCCATAGAACAAAAGCTGACCTAA 60.222 40.000 0.00 0.00 0.00 2.69
2922 3259 0.392998 TTGGAGGAGCGGATTCAAGC 60.393 55.000 0.00 0.00 0.00 4.01
2931 3268 2.005451 CAGTTGATTCTTGGAGGAGCG 58.995 52.381 0.00 0.00 0.00 5.03
2935 3272 3.618351 AGCATCAGTTGATTCTTGGAGG 58.382 45.455 0.00 0.00 31.21 4.30
2936 3273 4.574013 GGTAGCATCAGTTGATTCTTGGAG 59.426 45.833 0.00 0.00 30.90 3.86
2937 3274 4.019411 TGGTAGCATCAGTTGATTCTTGGA 60.019 41.667 0.00 0.00 30.90 3.53
2993 3333 6.709643 TCAAATGCCAAAATACAACAAAACG 58.290 32.000 0.00 0.00 0.00 3.60
3051 3391 2.927553 GCACAGTGCTCCCTTTAATG 57.072 50.000 18.92 0.00 40.96 1.90
3172 3512 4.278513 TGGCAACCCACCCCTTCG 62.279 66.667 0.00 0.00 35.79 3.79
3202 3543 8.085296 CCTTAACACCACATTAGTTTAAATGCA 58.915 33.333 0.00 0.00 39.93 3.96
3216 3557 2.175931 ACCCACAATCCTTAACACCACA 59.824 45.455 0.00 0.00 0.00 4.17
3224 3565 1.575419 ACCGCTACCCACAATCCTTA 58.425 50.000 0.00 0.00 0.00 2.69
3268 3609 7.727181 ACATGGTAAGAGTATCATTACACTCC 58.273 38.462 0.00 0.00 41.77 3.85
3627 3969 3.098377 AGCCCATGATGTTTATTGCACA 58.902 40.909 0.00 0.00 0.00 4.57
3675 4022 6.818644 GTGGTCTAAAAGAAGCATGATAGTGA 59.181 38.462 0.00 0.00 0.00 3.41
3677 4024 6.820656 CAGTGGTCTAAAAGAAGCATGATAGT 59.179 38.462 0.00 0.00 0.00 2.12
3680 4027 4.397417 GCAGTGGTCTAAAAGAAGCATGAT 59.603 41.667 0.00 0.00 0.00 2.45
3802 4152 7.041098 ACTCTGAAGCCTATTAACAAACAACAG 60.041 37.037 0.00 0.00 0.00 3.16
3803 4153 6.770785 ACTCTGAAGCCTATTAACAAACAACA 59.229 34.615 0.00 0.00 0.00 3.33
3804 4154 7.203255 ACTCTGAAGCCTATTAACAAACAAC 57.797 36.000 0.00 0.00 0.00 3.32
3814 4164 6.385467 ACATTTAGAGGACTCTGAAGCCTATT 59.615 38.462 11.95 0.00 38.36 1.73
4075 4430 7.876068 TCAAACATCACGTTCCTAATAGTCTTT 59.124 33.333 0.00 0.00 36.59 2.52
4077 4432 6.931838 TCAAACATCACGTTCCTAATAGTCT 58.068 36.000 0.00 0.00 36.59 3.24
4167 4522 8.037382 TCAACTAGCATTCATTCTTTTGAGAG 57.963 34.615 0.00 0.00 0.00 3.20
4219 4574 7.044798 AGGTGTATATCAAGCTCAAGAAGTTC 58.955 38.462 0.00 0.00 0.00 3.01
4347 4702 9.534565 CAGCTCATATTACTGCTACTCTTAAAA 57.465 33.333 0.00 0.00 34.10 1.52
4348 4703 8.696374 ACAGCTCATATTACTGCTACTCTTAAA 58.304 33.333 0.00 0.00 34.72 1.52
4349 4704 8.138074 CACAGCTCATATTACTGCTACTCTTAA 58.862 37.037 0.00 0.00 34.72 1.85
4350 4705 7.652727 CACAGCTCATATTACTGCTACTCTTA 58.347 38.462 0.00 0.00 34.72 2.10
4351 4706 6.511416 CACAGCTCATATTACTGCTACTCTT 58.489 40.000 0.00 0.00 34.72 2.85
4352 4707 5.508825 GCACAGCTCATATTACTGCTACTCT 60.509 44.000 0.00 0.00 34.72 3.24
4353 4708 4.683781 GCACAGCTCATATTACTGCTACTC 59.316 45.833 0.00 0.00 34.72 2.59
4354 4709 4.343526 AGCACAGCTCATATTACTGCTACT 59.656 41.667 0.00 0.00 30.62 2.57
4355 4710 4.447054 CAGCACAGCTCATATTACTGCTAC 59.553 45.833 0.00 0.00 36.40 3.58
4356 4711 4.625028 CAGCACAGCTCATATTACTGCTA 58.375 43.478 0.00 0.00 36.40 3.49
4357 4712 3.464907 CAGCACAGCTCATATTACTGCT 58.535 45.455 0.00 0.00 36.40 4.24
4370 4725 1.541147 TCAAATGTAAGGCAGCACAGC 59.459 47.619 0.00 0.00 0.00 4.40
4636 4991 2.762887 CTCTATCACAAGAGCAGGGACA 59.237 50.000 0.00 0.00 36.84 4.02
4653 5008 4.960938 ACTGCAACAAGATCACAACTCTA 58.039 39.130 0.00 0.00 0.00 2.43
4678 5036 6.295039 TGTTAAACCTCAACGAGAATGAAC 57.705 37.500 0.00 0.00 0.00 3.18
4685 5043 7.857569 TCAAAGTAATGTTAAACCTCAACGAG 58.142 34.615 0.00 0.00 0.00 4.18
4743 5101 9.797556 AAAGAACACAGTTAAGGTAAAAATGAC 57.202 29.630 0.00 0.00 0.00 3.06
4754 5112 4.094442 GGCGGGATAAAGAACACAGTTAAG 59.906 45.833 0.00 0.00 0.00 1.85
4757 5115 2.039879 AGGCGGGATAAAGAACACAGTT 59.960 45.455 0.00 0.00 0.00 3.16
4775 5133 2.079925 CTCAAGTTACTGGAGCAAGGC 58.920 52.381 3.56 0.00 0.00 4.35
4861 5219 3.584834 AGCACGATTAAAATTGGCAACC 58.415 40.909 0.00 0.00 0.00 3.77
4878 5236 2.223377 CAGTAACGGGTCAAAGAAGCAC 59.777 50.000 0.00 0.00 0.00 4.40
4883 5241 1.001633 GCTCCAGTAACGGGTCAAAGA 59.998 52.381 0.00 0.00 0.00 2.52
4912 5278 3.192001 GGGATTTCGAAACCCAAGTAACC 59.808 47.826 28.81 15.50 42.81 2.85
5056 5450 5.707298 CGGGCAAGACCATAGATAATTTGAT 59.293 40.000 0.00 0.00 42.05 2.57
5113 5507 1.048601 TCATAGGCGATGGGGTTCTC 58.951 55.000 7.77 0.00 36.08 2.87
5134 5529 7.544622 TGTAGCGTACTCTTGATGAAAGTATT 58.455 34.615 0.00 0.00 37.18 1.89
5154 5553 2.450609 TCACCTTTCGTCCTTGTAGC 57.549 50.000 0.00 0.00 0.00 3.58
5160 5559 2.159000 ACTTTCGTTCACCTTTCGTCCT 60.159 45.455 0.00 0.00 0.00 3.85
5161 5560 2.207590 ACTTTCGTTCACCTTTCGTCC 58.792 47.619 0.00 0.00 0.00 4.79
5162 5561 3.183172 GGTACTTTCGTTCACCTTTCGTC 59.817 47.826 0.00 0.00 0.00 4.20
5163 5562 3.126073 GGTACTTTCGTTCACCTTTCGT 58.874 45.455 0.00 0.00 0.00 3.85
5164 5563 3.387397 AGGTACTTTCGTTCACCTTTCG 58.613 45.455 0.00 0.00 38.23 3.46
5180 5579 5.073311 TGAGCACAGATGTAGAAAGGTAC 57.927 43.478 0.00 0.00 0.00 3.34
5181 5580 5.939764 ATGAGCACAGATGTAGAAAGGTA 57.060 39.130 0.00 0.00 0.00 3.08
5182 5581 4.833478 ATGAGCACAGATGTAGAAAGGT 57.167 40.909 0.00 0.00 0.00 3.50
5183 5582 5.931146 GGATATGAGCACAGATGTAGAAAGG 59.069 44.000 0.00 0.00 0.00 3.11
5184 5583 6.645827 CAGGATATGAGCACAGATGTAGAAAG 59.354 42.308 0.00 0.00 0.00 2.62
5185 5584 6.463472 CCAGGATATGAGCACAGATGTAGAAA 60.463 42.308 0.00 0.00 0.00 2.52
5186 5585 5.011431 CCAGGATATGAGCACAGATGTAGAA 59.989 44.000 0.00 0.00 0.00 2.10
5187 5586 4.525874 CCAGGATATGAGCACAGATGTAGA 59.474 45.833 0.00 0.00 0.00 2.59
5188 5587 4.282957 ACCAGGATATGAGCACAGATGTAG 59.717 45.833 0.00 0.00 0.00 2.74
5189 5588 4.039609 CACCAGGATATGAGCACAGATGTA 59.960 45.833 0.00 0.00 0.00 2.29
5190 5589 3.044156 ACCAGGATATGAGCACAGATGT 58.956 45.455 0.00 0.00 0.00 3.06
5191 5590 3.181457 ACACCAGGATATGAGCACAGATG 60.181 47.826 0.00 0.00 0.00 2.90
5192 5591 3.044156 ACACCAGGATATGAGCACAGAT 58.956 45.455 0.00 0.00 0.00 2.90
5193 5592 2.169144 CACACCAGGATATGAGCACAGA 59.831 50.000 0.00 0.00 0.00 3.41
5194 5593 2.169144 TCACACCAGGATATGAGCACAG 59.831 50.000 0.00 0.00 0.00 3.66
5195 5594 2.187100 TCACACCAGGATATGAGCACA 58.813 47.619 0.00 0.00 0.00 4.57
5196 5595 2.939103 GTTCACACCAGGATATGAGCAC 59.061 50.000 0.00 0.00 0.00 4.40
5197 5596 2.571202 TGTTCACACCAGGATATGAGCA 59.429 45.455 0.00 0.00 30.97 4.26
5198 5597 3.266510 TGTTCACACCAGGATATGAGC 57.733 47.619 0.00 0.00 0.00 4.26
5199 5598 7.864108 TTTATTGTTCACACCAGGATATGAG 57.136 36.000 0.00 0.00 0.00 2.90
5200 5599 8.821686 ATTTTATTGTTCACACCAGGATATGA 57.178 30.769 0.00 0.00 0.00 2.15
5264 5663 9.606631 ACAAACATTTCTTAAAGTATGCCAAAA 57.393 25.926 0.00 0.00 0.00 2.44
5265 5664 9.606631 AACAAACATTTCTTAAAGTATGCCAAA 57.393 25.926 0.00 0.00 0.00 3.28
5266 5665 9.039870 CAACAAACATTTCTTAAAGTATGCCAA 57.960 29.630 0.00 0.00 0.00 4.52
5267 5666 8.200792 ACAACAAACATTTCTTAAAGTATGCCA 58.799 29.630 0.00 0.00 0.00 4.92
5268 5667 8.487176 CACAACAAACATTTCTTAAAGTATGCC 58.513 33.333 0.00 0.00 0.00 4.40
5269 5668 8.003784 GCACAACAAACATTTCTTAAAGTATGC 58.996 33.333 0.00 0.00 0.00 3.14
5270 5669 9.029243 TGCACAACAAACATTTCTTAAAGTATG 57.971 29.630 0.00 0.00 0.00 2.39
5271 5670 9.762933 ATGCACAACAAACATTTCTTAAAGTAT 57.237 25.926 0.00 0.00 0.00 2.12
5272 5671 9.029243 CATGCACAACAAACATTTCTTAAAGTA 57.971 29.630 0.00 0.00 0.00 2.24
5273 5672 7.548780 ACATGCACAACAAACATTTCTTAAAGT 59.451 29.630 0.00 0.00 0.00 2.66
5274 5673 7.908230 ACATGCACAACAAACATTTCTTAAAG 58.092 30.769 0.00 0.00 0.00 1.85
5275 5674 7.840342 ACATGCACAACAAACATTTCTTAAA 57.160 28.000 0.00 0.00 0.00 1.52
5276 5675 8.932945 TTACATGCACAACAAACATTTCTTAA 57.067 26.923 0.00 0.00 0.00 1.85
5277 5676 8.932945 TTTACATGCACAACAAACATTTCTTA 57.067 26.923 0.00 0.00 0.00 2.10
5278 5677 7.840342 TTTACATGCACAACAAACATTTCTT 57.160 28.000 0.00 0.00 0.00 2.52
5279 5678 7.840342 TTTTACATGCACAACAAACATTTCT 57.160 28.000 0.00 0.00 0.00 2.52
5280 5679 9.500864 AAATTTTACATGCACAACAAACATTTC 57.499 25.926 0.00 0.00 0.00 2.17
5281 5680 9.500864 GAAATTTTACATGCACAACAAACATTT 57.499 25.926 0.00 0.00 0.00 2.32
5282 5681 8.671921 TGAAATTTTACATGCACAACAAACATT 58.328 25.926 0.00 0.00 0.00 2.71
5283 5682 8.206325 TGAAATTTTACATGCACAACAAACAT 57.794 26.923 0.00 0.00 0.00 2.71
5284 5683 7.601073 TGAAATTTTACATGCACAACAAACA 57.399 28.000 0.00 0.00 0.00 2.83
5285 5684 8.333908 TGATGAAATTTTACATGCACAACAAAC 58.666 29.630 0.00 0.00 0.00 2.93
5286 5685 8.429493 TGATGAAATTTTACATGCACAACAAA 57.571 26.923 0.00 0.00 0.00 2.83
5287 5686 8.496751 CATGATGAAATTTTACATGCACAACAA 58.503 29.630 15.00 0.00 33.42 2.83
5288 5687 7.871463 TCATGATGAAATTTTACATGCACAACA 59.129 29.630 19.08 6.53 38.39 3.33
5289 5688 8.242085 TCATGATGAAATTTTACATGCACAAC 57.758 30.769 19.08 2.26 38.39 3.32
5290 5689 8.828688 TTCATGATGAAATTTTACATGCACAA 57.171 26.923 5.21 11.36 38.39 3.33
5291 5690 8.828688 TTTCATGATGAAATTTTACATGCACA 57.171 26.923 16.04 5.72 41.02 4.57
5304 5703 7.229581 TCACCAATGTGATTTCATGATGAAA 57.770 32.000 21.39 21.39 46.40 2.69
5305 5704 6.837471 TCACCAATGTGATTTCATGATGAA 57.163 33.333 3.29 3.29 46.40 2.57
5318 5717 1.334960 GCCACGACTTTCACCAATGTG 60.335 52.381 0.00 0.00 44.18 3.21
5319 5718 0.951558 GCCACGACTTTCACCAATGT 59.048 50.000 0.00 0.00 0.00 2.71
5320 5719 0.950836 TGCCACGACTTTCACCAATG 59.049 50.000 0.00 0.00 0.00 2.82
5321 5720 1.686355 TTGCCACGACTTTCACCAAT 58.314 45.000 0.00 0.00 0.00 3.16
5322 5721 1.464734 TTTGCCACGACTTTCACCAA 58.535 45.000 0.00 0.00 0.00 3.67
5323 5722 1.464734 TTTTGCCACGACTTTCACCA 58.535 45.000 0.00 0.00 0.00 4.17
5324 5723 2.570442 TTTTTGCCACGACTTTCACC 57.430 45.000 0.00 0.00 0.00 4.02
5341 5740 9.485206 CATTTTGGAGATCTCATTTTGTCTTTT 57.515 29.630 23.85 0.00 0.00 2.27
5342 5741 7.601508 GCATTTTGGAGATCTCATTTTGTCTTT 59.398 33.333 23.85 0.00 0.00 2.52
5343 5742 7.095270 GCATTTTGGAGATCTCATTTTGTCTT 58.905 34.615 23.85 0.00 0.00 3.01
5344 5743 6.209986 TGCATTTTGGAGATCTCATTTTGTCT 59.790 34.615 23.85 0.00 0.00 3.41
5345 5744 6.392354 TGCATTTTGGAGATCTCATTTTGTC 58.608 36.000 23.85 5.57 0.00 3.18
5346 5745 6.349243 TGCATTTTGGAGATCTCATTTTGT 57.651 33.333 23.85 2.80 0.00 2.83
5347 5746 7.843490 AATGCATTTTGGAGATCTCATTTTG 57.157 32.000 23.85 14.34 0.00 2.44
5348 5747 8.098286 TCAAATGCATTTTGGAGATCTCATTTT 58.902 29.630 21.95 4.52 44.07 1.82
5349 5748 7.617225 TCAAATGCATTTTGGAGATCTCATTT 58.383 30.769 21.95 15.01 44.07 2.32
5350 5749 7.177832 TCAAATGCATTTTGGAGATCTCATT 57.822 32.000 21.95 10.13 44.07 2.57
5351 5750 6.785337 TCAAATGCATTTTGGAGATCTCAT 57.215 33.333 21.95 6.27 44.07 2.90
5352 5751 6.593268 TTCAAATGCATTTTGGAGATCTCA 57.407 33.333 21.95 7.82 44.07 3.27
5353 5752 7.039882 ACATTCAAATGCATTTTGGAGATCTC 58.960 34.615 21.95 14.75 44.07 2.75
5354 5753 6.942976 ACATTCAAATGCATTTTGGAGATCT 58.057 32.000 21.95 0.00 44.07 2.75
5355 5754 8.598075 GTTACATTCAAATGCATTTTGGAGATC 58.402 33.333 21.95 6.39 44.07 2.75
5356 5755 8.095792 TGTTACATTCAAATGCATTTTGGAGAT 58.904 29.630 21.95 8.97 44.07 2.75
5357 5756 7.440198 TGTTACATTCAAATGCATTTTGGAGA 58.560 30.769 21.95 13.17 44.07 3.71
5358 5757 7.655236 TGTTACATTCAAATGCATTTTGGAG 57.345 32.000 21.95 14.27 44.07 3.86
5359 5758 8.618702 AATGTTACATTCAAATGCATTTTGGA 57.381 26.923 21.95 14.23 44.07 3.53
5360 5759 9.680315 AAAATGTTACATTCAAATGCATTTTGG 57.320 25.926 21.95 12.10 44.07 3.28
5365 5764 9.491675 TCTGAAAAATGTTACATTCAAATGCAT 57.508 25.926 11.24 0.00 40.04 3.96
5366 5765 8.883954 TCTGAAAAATGTTACATTCAAATGCA 57.116 26.923 11.24 0.00 40.04 3.96
5367 5766 7.953710 GCTCTGAAAAATGTTACATTCAAATGC 59.046 33.333 11.24 6.91 40.04 3.56
5368 5767 8.980610 TGCTCTGAAAAATGTTACATTCAAATG 58.019 29.630 11.24 1.20 42.10 2.32
5369 5768 9.715121 ATGCTCTGAAAAATGTTACATTCAAAT 57.285 25.926 11.24 0.00 31.94 2.32
5370 5769 9.545105 AATGCTCTGAAAAATGTTACATTCAAA 57.455 25.926 11.24 0.00 31.94 2.69
5371 5770 8.980610 CAATGCTCTGAAAAATGTTACATTCAA 58.019 29.630 11.24 0.00 31.94 2.69
5372 5771 8.358895 TCAATGCTCTGAAAAATGTTACATTCA 58.641 29.630 11.24 5.46 0.00 2.57
5373 5772 8.746922 TCAATGCTCTGAAAAATGTTACATTC 57.253 30.769 11.24 0.71 0.00 2.67
5374 5773 9.715121 AATCAATGCTCTGAAAAATGTTACATT 57.285 25.926 4.56 4.56 0.00 2.71
5375 5774 9.715121 AAATCAATGCTCTGAAAAATGTTACAT 57.285 25.926 0.00 0.00 0.00 2.29
5376 5775 9.545105 AAAATCAATGCTCTGAAAAATGTTACA 57.455 25.926 0.00 0.00 0.00 2.41
5377 5776 9.801714 CAAAATCAATGCTCTGAAAAATGTTAC 57.198 29.630 0.00 0.00 0.00 2.50
5378 5777 9.545105 ACAAAATCAATGCTCTGAAAAATGTTA 57.455 25.926 0.00 0.00 0.00 2.41
5379 5778 8.441312 ACAAAATCAATGCTCTGAAAAATGTT 57.559 26.923 0.00 0.00 0.00 2.71
5380 5779 7.929785 AGACAAAATCAATGCTCTGAAAAATGT 59.070 29.630 0.00 0.00 0.00 2.71
5381 5780 8.306680 AGACAAAATCAATGCTCTGAAAAATG 57.693 30.769 0.00 0.00 0.00 2.32
5382 5781 8.897872 AAGACAAAATCAATGCTCTGAAAAAT 57.102 26.923 0.00 0.00 0.00 1.82
5383 5782 8.721019 AAAGACAAAATCAATGCTCTGAAAAA 57.279 26.923 0.00 0.00 0.00 1.94
5384 5783 8.721019 AAAAGACAAAATCAATGCTCTGAAAA 57.279 26.923 0.00 0.00 0.00 2.29
5385 5784 8.721019 AAAAAGACAAAATCAATGCTCTGAAA 57.279 26.923 0.00 0.00 0.00 2.69
5407 5806 2.376109 TGTTGGAAGGCGTGGTAAAAA 58.624 42.857 0.00 0.00 0.00 1.94
5408 5807 2.054232 TGTTGGAAGGCGTGGTAAAA 57.946 45.000 0.00 0.00 0.00 1.52
5409 5808 2.054232 TTGTTGGAAGGCGTGGTAAA 57.946 45.000 0.00 0.00 0.00 2.01
5410 5809 1.883275 CATTGTTGGAAGGCGTGGTAA 59.117 47.619 0.00 0.00 0.00 2.85
5411 5810 1.202830 ACATTGTTGGAAGGCGTGGTA 60.203 47.619 0.00 0.00 0.00 3.25
5412 5811 0.467290 ACATTGTTGGAAGGCGTGGT 60.467 50.000 0.00 0.00 0.00 4.16
5413 5812 0.240945 GACATTGTTGGAAGGCGTGG 59.759 55.000 0.00 0.00 0.00 4.94
5414 5813 0.950836 TGACATTGTTGGAAGGCGTG 59.049 50.000 0.00 0.00 0.00 5.34
5415 5814 1.909700 ATGACATTGTTGGAAGGCGT 58.090 45.000 0.00 0.00 0.00 5.68
5416 5815 3.244976 GAAATGACATTGTTGGAAGGCG 58.755 45.455 0.34 0.00 0.00 5.52
5417 5816 3.244976 CGAAATGACATTGTTGGAAGGC 58.755 45.455 0.34 0.00 0.00 4.35
5418 5817 4.023279 TCACGAAATGACATTGTTGGAAGG 60.023 41.667 0.34 0.00 29.99 3.46
5419 5818 5.107109 TCACGAAATGACATTGTTGGAAG 57.893 39.130 0.34 0.00 29.99 3.46
5420 5819 5.703978 ATCACGAAATGACATTGTTGGAA 57.296 34.783 0.34 0.00 41.24 3.53
5421 5820 6.809630 TTATCACGAAATGACATTGTTGGA 57.190 33.333 0.34 0.00 41.24 3.53
5422 5821 7.865875 TTTTATCACGAAATGACATTGTTGG 57.134 32.000 0.34 0.00 41.24 3.77
5426 5825 9.253275 GCAAAATTTTATCACGAAATGACATTG 57.747 29.630 2.44 0.00 41.24 2.82
5427 5826 8.986847 TGCAAAATTTTATCACGAAATGACATT 58.013 25.926 2.44 0.00 41.24 2.71
5428 5827 8.531622 TGCAAAATTTTATCACGAAATGACAT 57.468 26.923 2.44 0.00 41.24 3.06
5429 5828 7.936950 TGCAAAATTTTATCACGAAATGACA 57.063 28.000 2.44 0.00 41.24 3.58
5430 5829 7.423314 GCATGCAAAATTTTATCACGAAATGAC 59.577 33.333 14.21 0.00 41.24 3.06
5431 5830 7.117379 TGCATGCAAAATTTTATCACGAAATGA 59.883 29.630 20.30 0.00 43.13 2.57
5432 5831 7.214821 GTGCATGCAAAATTTTATCACGAAATG 59.785 33.333 24.58 1.87 0.00 2.32
5433 5832 7.095313 TGTGCATGCAAAATTTTATCACGAAAT 60.095 29.630 24.58 0.00 0.00 2.17
5434 5833 6.201615 TGTGCATGCAAAATTTTATCACGAAA 59.798 30.769 24.58 0.00 0.00 3.46
5435 5834 5.693555 TGTGCATGCAAAATTTTATCACGAA 59.306 32.000 24.58 0.00 0.00 3.85
5436 5835 5.225642 TGTGCATGCAAAATTTTATCACGA 58.774 33.333 24.58 0.00 0.00 4.35
5437 5836 5.512573 TGTGCATGCAAAATTTTATCACG 57.487 34.783 24.58 0.00 0.00 4.35
5438 5837 6.656945 TGTTGTGCATGCAAAATTTTATCAC 58.343 32.000 25.58 11.83 0.00 3.06
5439 5838 6.856135 TGTTGTGCATGCAAAATTTTATCA 57.144 29.167 25.58 14.81 0.00 2.15
5440 5839 8.730970 ATTTGTTGTGCATGCAAAATTTTATC 57.269 26.923 25.58 12.42 36.00 1.75
5443 5842 9.530633 AAATATTTGTTGTGCATGCAAAATTTT 57.469 22.222 25.58 20.90 36.00 1.82
5444 5843 9.182933 GAAATATTTGTTGTGCATGCAAAATTT 57.817 25.926 25.58 19.33 36.00 1.82
5445 5844 8.569641 AGAAATATTTGTTGTGCATGCAAAATT 58.430 25.926 25.58 14.00 36.00 1.82
5446 5845 8.101654 AGAAATATTTGTTGTGCATGCAAAAT 57.898 26.923 25.58 24.69 36.00 1.82
5447 5846 7.493743 AGAAATATTTGTTGTGCATGCAAAA 57.506 28.000 24.58 21.90 36.00 2.44
5448 5847 7.493743 AAGAAATATTTGTTGTGCATGCAAA 57.506 28.000 24.58 15.92 36.68 3.68
5449 5848 8.599055 TTAAGAAATATTTGTTGTGCATGCAA 57.401 26.923 24.58 10.26 0.00 4.08
5450 5849 8.599055 TTTAAGAAATATTTGTTGTGCATGCA 57.401 26.923 18.46 18.46 0.00 3.96
5451 5850 8.711457 ACTTTAAGAAATATTTGTTGTGCATGC 58.289 29.630 18.20 11.82 0.00 4.06
5473 5872 9.995003 TTCTGAATTATTTTTGTGGCATACTTT 57.005 25.926 0.00 0.00 0.00 2.66
5522 5921 9.575868 TCCTGGTGTGAACAGTAAAATAAATAA 57.424 29.630 0.00 0.00 34.16 1.40
5523 5922 9.226606 CTCCTGGTGTGAACAGTAAAATAAATA 57.773 33.333 0.00 0.00 34.16 1.40
5524 5923 7.309194 GCTCCTGGTGTGAACAGTAAAATAAAT 60.309 37.037 0.00 0.00 34.16 1.40
5525 5924 6.016610 GCTCCTGGTGTGAACAGTAAAATAAA 60.017 38.462 0.00 0.00 34.16 1.40
5526 5925 5.472137 GCTCCTGGTGTGAACAGTAAAATAA 59.528 40.000 0.00 0.00 34.16 1.40
5527 5926 5.001232 GCTCCTGGTGTGAACAGTAAAATA 58.999 41.667 0.00 0.00 34.16 1.40
5528 5927 3.821033 GCTCCTGGTGTGAACAGTAAAAT 59.179 43.478 0.00 0.00 34.16 1.82
5529 5928 3.211045 GCTCCTGGTGTGAACAGTAAAA 58.789 45.455 0.00 0.00 34.16 1.52
5530 5929 2.171659 TGCTCCTGGTGTGAACAGTAAA 59.828 45.455 0.00 0.00 34.16 2.01
5531 5930 1.765904 TGCTCCTGGTGTGAACAGTAA 59.234 47.619 0.00 0.00 34.16 2.24
5532 5931 1.419381 TGCTCCTGGTGTGAACAGTA 58.581 50.000 0.00 0.00 34.16 2.74
5533 5932 0.767375 ATGCTCCTGGTGTGAACAGT 59.233 50.000 0.00 0.00 34.16 3.55
5534 5933 2.768253 TATGCTCCTGGTGTGAACAG 57.232 50.000 0.00 0.00 35.74 3.16
5535 5934 2.571202 TCATATGCTCCTGGTGTGAACA 59.429 45.455 0.00 0.00 0.00 3.18
5536 5935 3.266510 TCATATGCTCCTGGTGTGAAC 57.733 47.619 0.00 0.00 0.00 3.18
5537 5936 3.998913 TTCATATGCTCCTGGTGTGAA 57.001 42.857 0.00 0.00 0.00 3.18
5538 5937 3.998913 TTTCATATGCTCCTGGTGTGA 57.001 42.857 0.00 0.00 0.00 3.58
5539 5938 3.949754 ACATTTCATATGCTCCTGGTGTG 59.050 43.478 0.00 0.00 0.00 3.82
5540 5939 4.240881 ACATTTCATATGCTCCTGGTGT 57.759 40.909 0.00 0.00 0.00 4.16
5541 5940 6.889301 AATACATTTCATATGCTCCTGGTG 57.111 37.500 0.00 0.00 0.00 4.17
5542 5941 7.902920 AAAATACATTTCATATGCTCCTGGT 57.097 32.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.