Multiple sequence alignment - TraesCS3A01G217700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G217700 chr3A 100.000 5704 0 0 1 5704 398735293 398740996 0.000000e+00 10534.0
1 TraesCS3A01G217700 chr3A 100.000 560 0 0 6069 6628 398741361 398741920 0.000000e+00 1035.0
2 TraesCS3A01G217700 chr3A 79.056 339 52 17 3093 3423 23373869 23374196 1.450000e-51 215.0
3 TraesCS3A01G217700 chr3D 96.429 2212 56 4 847 3056 323721068 323718878 0.000000e+00 3626.0
4 TraesCS3A01G217700 chr3D 96.176 680 20 6 4834 5512 323718892 323718218 0.000000e+00 1107.0
5 TraesCS3A01G217700 chr3D 82.895 456 49 10 6138 6564 56362141 56362596 3.750000e-102 383.0
6 TraesCS3A01G217700 chr3D 83.797 395 29 15 6266 6628 323717673 323717282 6.360000e-90 342.0
7 TraesCS3A01G217700 chr3D 80.921 456 53 17 6138 6562 611593711 611594163 4.950000e-86 329.0
8 TraesCS3A01G217700 chr3D 80.574 453 58 14 6138 6561 85594450 85594901 8.290000e-84 322.0
9 TraesCS3A01G217700 chr3D 79.956 459 63 13 6141 6570 597288811 597288353 1.790000e-80 311.0
10 TraesCS3A01G217700 chr3D 85.455 165 10 6 5493 5656 323718201 323718050 6.880000e-35 159.0
11 TraesCS3A01G217700 chr3B 96.288 2209 69 4 856 3056 395350528 395352731 0.000000e+00 3613.0
12 TraesCS3A01G217700 chr3B 91.065 1164 95 8 3674 4832 41619354 41618195 0.000000e+00 1565.0
13 TraesCS3A01G217700 chr3B 92.874 828 26 11 4834 5634 395352717 395353538 0.000000e+00 1171.0
14 TraesCS3A01G217700 chr3B 89.456 588 50 9 1 582 190155682 190155101 0.000000e+00 732.0
15 TraesCS3A01G217700 chr3B 83.908 522 55 17 6133 6628 395354019 395354537 7.780000e-129 472.0
16 TraesCS3A01G217700 chr3B 81.978 455 53 5 6138 6563 92329993 92330447 6.320000e-95 359.0
17 TraesCS3A01G217700 chr3B 81.637 452 54 5 6141 6563 27514032 27513581 1.370000e-91 348.0
18 TraesCS3A01G217700 chr3B 81.416 452 52 8 6141 6563 12765517 12765069 2.290000e-89 340.0
19 TraesCS3A01G217700 chr3B 88.333 60 3 3 788 845 701808728 701808785 1.190000e-07 69.4
20 TraesCS3A01G217700 chr1A 87.904 1422 134 16 3441 4832 224824107 224825520 0.000000e+00 1639.0
21 TraesCS3A01G217700 chr6B 91.164 1177 93 9 3664 4834 695158023 695159194 0.000000e+00 1587.0
22 TraesCS3A01G217700 chr6B 91.064 1175 94 8 3664 4833 160919377 160920545 0.000000e+00 1578.0
23 TraesCS3A01G217700 chr6B 90.646 1176 99 10 3664 4834 689086514 689087683 0.000000e+00 1552.0
24 TraesCS3A01G217700 chr6B 85.795 880 72 20 1 835 18945676 18946547 0.000000e+00 883.0
25 TraesCS3A01G217700 chr6B 85.759 632 64 20 1 615 617167913 617167291 0.000000e+00 645.0
26 TraesCS3A01G217700 chr6B 100.000 30 0 0 3061 3090 542563250 542563279 1.000000e-03 56.5
27 TraesCS3A01G217700 chr2B 91.064 1175 96 8 3664 4833 52675991 52677161 0.000000e+00 1580.0
28 TraesCS3A01G217700 chr2B 85.460 619 74 14 7 614 116392174 116391561 1.210000e-176 630.0
29 TraesCS3A01G217700 chr2B 84.534 569 70 17 1 565 198315978 198316532 1.260000e-151 547.0
30 TraesCS3A01G217700 chr2B 82.955 616 87 15 1 606 621541161 621541768 2.100000e-149 540.0
31 TraesCS3A01G217700 chr2B 78.743 334 52 17 3101 3426 690216233 690215911 8.710000e-49 206.0
32 TraesCS3A01G217700 chr2B 86.458 192 19 7 6374 6561 27913157 27913345 3.130000e-48 204.0
33 TraesCS3A01G217700 chr1D 90.017 1202 100 14 3645 4836 58825489 58824298 0.000000e+00 1537.0
34 TraesCS3A01G217700 chr1D 89.850 1202 109 12 3641 4835 263530226 263531421 0.000000e+00 1531.0
35 TraesCS3A01G217700 chr1D 80.756 291 43 11 3104 3387 89562402 89562686 1.450000e-51 215.0
36 TraesCS3A01G217700 chr1D 78.134 343 57 16 3089 3423 453075644 453075976 1.130000e-47 202.0
37 TraesCS3A01G217700 chr7D 89.975 1197 109 10 3642 4832 17170622 17171813 0.000000e+00 1535.0
38 TraesCS3A01G217700 chr7D 84.694 588 69 17 1 582 587084898 587085470 9.650000e-158 568.0
39 TraesCS3A01G217700 chr7D 80.387 413 49 16 6180 6562 162985093 162984683 1.090000e-72 285.0
40 TraesCS3A01G217700 chr2A 89.573 1218 113 13 3629 4838 48843026 48844237 0.000000e+00 1533.0
41 TraesCS3A01G217700 chr2A 81.579 456 55 5 6138 6564 26932731 26933186 3.800000e-92 350.0
42 TraesCS3A01G217700 chr2A 80.063 316 58 4 3094 3407 745726961 745727273 5.170000e-56 230.0
43 TraesCS3A01G217700 chr7B 87.201 586 62 12 1 582 207773043 207772467 0.000000e+00 654.0
44 TraesCS3A01G217700 chr7B 86.555 238 31 1 6141 6377 92553500 92553263 1.830000e-65 261.0
45 TraesCS3A01G217700 chr7B 96.552 58 2 0 788 845 409021446 409021503 5.470000e-16 97.1
46 TraesCS3A01G217700 chr1B 85.284 564 62 17 11 566 345333076 345333626 4.490000e-156 562.0
47 TraesCS3A01G217700 chr1B 81.333 450 54 6 6138 6557 610971012 610971461 8.230000e-89 339.0
48 TraesCS3A01G217700 chr1B 78.614 332 50 17 3101 3423 137133918 137133599 4.050000e-47 200.0
49 TraesCS3A01G217700 chr4A 82.281 491 61 11 3291 3758 487940552 487941039 1.040000e-107 401.0
50 TraesCS3A01G217700 chr4A 81.718 454 53 6 6138 6562 69305657 69306109 1.060000e-92 351.0
51 TraesCS3A01G217700 chr4D 81.278 454 55 18 6138 6562 6262294 6262746 2.290000e-89 340.0
52 TraesCS3A01G217700 chr4D 80.269 446 64 16 6138 6564 498193534 498193974 1.390000e-81 315.0
53 TraesCS3A01G217700 chrUn 78.761 339 53 17 3096 3426 461463869 461463542 6.730000e-50 209.0
54 TraesCS3A01G217700 chr7A 78.852 331 51 17 3101 3423 264325008 264325327 8.710000e-49 206.0
55 TraesCS3A01G217700 chr7A 85.000 200 22 6 6374 6568 141624153 141624349 5.240000e-46 196.0
56 TraesCS3A01G217700 chr5A 78.806 335 50 17 3101 3426 639186143 639185821 8.710000e-49 206.0
57 TraesCS3A01G217700 chr6D 100.000 30 0 0 3061 3090 361226921 361226950 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G217700 chr3A 398735293 398741920 6627 False 5784.5 10534 100.000000 1 6628 2 chr3A.!!$F2 6627
1 TraesCS3A01G217700 chr3D 323717282 323721068 3786 True 1308.5 3626 90.464250 847 6628 4 chr3D.!!$R2 5781
2 TraesCS3A01G217700 chr3B 395350528 395354537 4009 False 1752.0 3613 91.023333 856 6628 3 chr3B.!!$F3 5772
3 TraesCS3A01G217700 chr3B 41618195 41619354 1159 True 1565.0 1565 91.065000 3674 4832 1 chr3B.!!$R3 1158
4 TraesCS3A01G217700 chr3B 190155101 190155682 581 True 732.0 732 89.456000 1 582 1 chr3B.!!$R4 581
5 TraesCS3A01G217700 chr1A 224824107 224825520 1413 False 1639.0 1639 87.904000 3441 4832 1 chr1A.!!$F1 1391
6 TraesCS3A01G217700 chr6B 695158023 695159194 1171 False 1587.0 1587 91.164000 3664 4834 1 chr6B.!!$F5 1170
7 TraesCS3A01G217700 chr6B 160919377 160920545 1168 False 1578.0 1578 91.064000 3664 4833 1 chr6B.!!$F2 1169
8 TraesCS3A01G217700 chr6B 689086514 689087683 1169 False 1552.0 1552 90.646000 3664 4834 1 chr6B.!!$F4 1170
9 TraesCS3A01G217700 chr6B 18945676 18946547 871 False 883.0 883 85.795000 1 835 1 chr6B.!!$F1 834
10 TraesCS3A01G217700 chr6B 617167291 617167913 622 True 645.0 645 85.759000 1 615 1 chr6B.!!$R1 614
11 TraesCS3A01G217700 chr2B 52675991 52677161 1170 False 1580.0 1580 91.064000 3664 4833 1 chr2B.!!$F2 1169
12 TraesCS3A01G217700 chr2B 116391561 116392174 613 True 630.0 630 85.460000 7 614 1 chr2B.!!$R1 607
13 TraesCS3A01G217700 chr2B 198315978 198316532 554 False 547.0 547 84.534000 1 565 1 chr2B.!!$F3 564
14 TraesCS3A01G217700 chr2B 621541161 621541768 607 False 540.0 540 82.955000 1 606 1 chr2B.!!$F4 605
15 TraesCS3A01G217700 chr1D 58824298 58825489 1191 True 1537.0 1537 90.017000 3645 4836 1 chr1D.!!$R1 1191
16 TraesCS3A01G217700 chr1D 263530226 263531421 1195 False 1531.0 1531 89.850000 3641 4835 1 chr1D.!!$F2 1194
17 TraesCS3A01G217700 chr7D 17170622 17171813 1191 False 1535.0 1535 89.975000 3642 4832 1 chr7D.!!$F1 1190
18 TraesCS3A01G217700 chr7D 587084898 587085470 572 False 568.0 568 84.694000 1 582 1 chr7D.!!$F2 581
19 TraesCS3A01G217700 chr2A 48843026 48844237 1211 False 1533.0 1533 89.573000 3629 4838 1 chr2A.!!$F2 1209
20 TraesCS3A01G217700 chr7B 207772467 207773043 576 True 654.0 654 87.201000 1 582 1 chr7B.!!$R2 581
21 TraesCS3A01G217700 chr1B 345333076 345333626 550 False 562.0 562 85.284000 11 566 1 chr1B.!!$F1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 810 0.030638 GGAGCTTGCTGTTTTTGCGA 59.969 50.000 0.0 0.0 0.00 5.10 F
1905 1940 1.135024 GTGGCCGTATCGAGTGGTTTA 60.135 52.381 0.0 0.0 0.00 2.01 F
3092 3130 0.038159 GTCACAACTCGTCCAGGGAG 60.038 60.000 0.0 0.0 37.54 4.30 F
3398 3436 0.035881 ATCTGGTGTGGTGCTGAGTG 59.964 55.000 0.0 0.0 0.00 3.51 F
3569 3607 0.107459 GTGGTGGATCTGAGGCTTCC 60.107 60.000 0.0 0.0 0.00 3.46 F
3990 4052 0.250234 CTCTTCATCGTCAGGGGCAA 59.750 55.000 0.0 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2260 2295 0.110238 CGTGCATGTTCGGTCCTTTG 60.110 55.0 0.00 0.00 0.00 2.77 R
3379 3417 0.035881 CACTCAGCACCACACCAGAT 59.964 55.0 0.00 0.00 0.00 2.90 R
4535 4602 0.105142 ATCGTACACCATAGGGCCCT 60.105 55.0 31.35 31.35 37.90 5.19 R
5102 5411 0.178068 AAGCATCGGCCGATTACAGT 59.822 50.0 37.36 20.21 42.56 3.55 R
5289 5598 0.462047 CCTTGCTAAAGCCGGATCGT 60.462 55.0 5.05 0.00 41.18 3.73 R
5662 6033 0.031010 AGGCGGGAGGAGGAAGTATT 60.031 55.0 0.00 0.00 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
263 274 8.879342 TCTCAAGTACAAGAAAGAGAAGAAAG 57.121 34.615 0.00 0.00 0.00 2.62
288 300 9.702494 AGAGGAATTGCAAAGAAATAGAAAAAG 57.298 29.630 1.71 0.00 0.00 2.27
550 565 9.658799 AAAGGAAAGAAAAAGAAAGAGGAAAAG 57.341 29.630 0.00 0.00 0.00 2.27
551 566 7.786030 AGGAAAGAAAAAGAAAGAGGAAAAGG 58.214 34.615 0.00 0.00 0.00 3.11
552 567 7.619698 AGGAAAGAAAAAGAAAGAGGAAAAGGA 59.380 33.333 0.00 0.00 0.00 3.36
553 568 7.923344 GGAAAGAAAAAGAAAGAGGAAAAGGAG 59.077 37.037 0.00 0.00 0.00 3.69
554 569 8.595362 AAAGAAAAAGAAAGAGGAAAAGGAGA 57.405 30.769 0.00 0.00 0.00 3.71
555 570 7.815840 AGAAAAAGAAAGAGGAAAAGGAGAG 57.184 36.000 0.00 0.00 0.00 3.20
556 571 7.578203 AGAAAAAGAAAGAGGAAAAGGAGAGA 58.422 34.615 0.00 0.00 0.00 3.10
557 572 8.055790 AGAAAAAGAAAGAGGAAAAGGAGAGAA 58.944 33.333 0.00 0.00 0.00 2.87
558 573 8.595362 AAAAAGAAAGAGGAAAAGGAGAGAAA 57.405 30.769 0.00 0.00 0.00 2.52
559 574 7.815840 AAAGAAAGAGGAAAAGGAGAGAAAG 57.184 36.000 0.00 0.00 0.00 2.62
560 575 6.755542 AGAAAGAGGAAAAGGAGAGAAAGA 57.244 37.500 0.00 0.00 0.00 2.52
561 576 7.142995 AGAAAGAGGAAAAGGAGAGAAAGAA 57.857 36.000 0.00 0.00 0.00 2.52
562 577 7.578203 AGAAAGAGGAAAAGGAGAGAAAGAAA 58.422 34.615 0.00 0.00 0.00 2.52
563 578 8.055790 AGAAAGAGGAAAAGGAGAGAAAGAAAA 58.944 33.333 0.00 0.00 0.00 2.29
564 579 8.595362 AAAGAGGAAAAGGAGAGAAAGAAAAA 57.405 30.769 0.00 0.00 0.00 1.94
609 624 2.992124 GGAACCTCCTAGAAAGCTCC 57.008 55.000 0.00 0.00 32.53 4.70
610 625 2.188817 GGAACCTCCTAGAAAGCTCCA 58.811 52.381 0.00 0.00 32.53 3.86
611 626 2.572104 GGAACCTCCTAGAAAGCTCCAA 59.428 50.000 0.00 0.00 32.53 3.53
612 627 3.009143 GGAACCTCCTAGAAAGCTCCAAA 59.991 47.826 0.00 0.00 32.53 3.28
613 628 4.506802 GGAACCTCCTAGAAAGCTCCAAAA 60.507 45.833 0.00 0.00 32.53 2.44
614 629 4.724279 ACCTCCTAGAAAGCTCCAAAAA 57.276 40.909 0.00 0.00 0.00 1.94
638 653 6.838198 AAAACGGCTCAAAAACCTAAAATC 57.162 33.333 0.00 0.00 0.00 2.17
639 654 4.155310 ACGGCTCAAAAACCTAAAATCG 57.845 40.909 0.00 0.00 0.00 3.34
640 655 3.057806 ACGGCTCAAAAACCTAAAATCGG 60.058 43.478 0.00 0.00 0.00 4.18
641 656 3.057806 CGGCTCAAAAACCTAAAATCGGT 60.058 43.478 0.00 0.00 35.97 4.69
642 657 4.234574 GGCTCAAAAACCTAAAATCGGTG 58.765 43.478 0.00 0.00 34.33 4.94
643 658 4.234574 GCTCAAAAACCTAAAATCGGTGG 58.765 43.478 0.00 0.00 34.33 4.61
644 659 4.261867 GCTCAAAAACCTAAAATCGGTGGT 60.262 41.667 0.00 0.00 34.33 4.16
645 660 5.441709 TCAAAAACCTAAAATCGGTGGTC 57.558 39.130 0.00 0.00 34.33 4.02
646 661 4.023878 TCAAAAACCTAAAATCGGTGGTCG 60.024 41.667 0.00 0.00 40.90 4.79
647 662 2.103537 AACCTAAAATCGGTGGTCGG 57.896 50.000 0.00 0.00 39.77 4.79
648 663 0.251073 ACCTAAAATCGGTGGTCGGG 59.749 55.000 0.00 0.00 39.77 5.14
649 664 1.093496 CCTAAAATCGGTGGTCGGGC 61.093 60.000 0.00 0.00 39.77 6.13
650 665 1.078285 TAAAATCGGTGGTCGGGCC 60.078 57.895 0.00 0.00 39.77 5.80
660 675 4.603946 GTCGGGCCGGCCTACATC 62.604 72.222 42.70 25.78 36.10 3.06
662 677 3.941188 CGGGCCGGCCTACATCAT 61.941 66.667 42.70 0.00 36.10 2.45
663 678 2.032681 GGGCCGGCCTACATCATC 59.967 66.667 42.70 21.56 36.10 2.92
664 679 2.032681 GGCCGGCCTACATCATCC 59.967 66.667 38.76 7.31 0.00 3.51
665 680 2.032681 GCCGGCCTACATCATCCC 59.967 66.667 18.11 0.00 0.00 3.85
666 681 2.520536 GCCGGCCTACATCATCCCT 61.521 63.158 18.11 0.00 0.00 4.20
667 682 1.674057 CCGGCCTACATCATCCCTC 59.326 63.158 0.00 0.00 0.00 4.30
668 683 1.290324 CGGCCTACATCATCCCTCG 59.710 63.158 0.00 0.00 0.00 4.63
669 684 1.464376 CGGCCTACATCATCCCTCGT 61.464 60.000 0.00 0.00 0.00 4.18
670 685 0.759346 GGCCTACATCATCCCTCGTT 59.241 55.000 0.00 0.00 0.00 3.85
671 686 1.541233 GGCCTACATCATCCCTCGTTG 60.541 57.143 0.00 0.00 0.00 4.10
672 687 1.541233 GCCTACATCATCCCTCGTTGG 60.541 57.143 0.00 0.00 0.00 3.77
673 688 1.541233 CCTACATCATCCCTCGTTGGC 60.541 57.143 0.00 0.00 0.00 4.52
674 689 0.104120 TACATCATCCCTCGTTGGCG 59.896 55.000 0.00 0.00 39.92 5.69
675 690 1.143838 CATCATCCCTCGTTGGCGA 59.856 57.895 0.00 0.00 45.79 5.54
683 698 4.667420 TCGTTGGCGAACCTCTTC 57.333 55.556 5.98 0.00 44.92 2.87
684 699 2.046938 TCGTTGGCGAACCTCTTCT 58.953 52.632 5.98 0.00 44.92 2.85
685 700 1.250328 TCGTTGGCGAACCTCTTCTA 58.750 50.000 5.98 0.00 44.92 2.10
686 701 1.201647 TCGTTGGCGAACCTCTTCTAG 59.798 52.381 5.98 0.00 44.92 2.43
687 702 1.360820 GTTGGCGAACCTCTTCTAGC 58.639 55.000 0.00 0.00 36.63 3.42
688 703 0.973632 TTGGCGAACCTCTTCTAGCA 59.026 50.000 0.00 0.00 36.63 3.49
689 704 0.532573 TGGCGAACCTCTTCTAGCAG 59.467 55.000 0.00 0.00 36.63 4.24
690 705 0.179097 GGCGAACCTCTTCTAGCAGG 60.179 60.000 0.00 0.00 35.69 4.85
691 706 0.179097 GCGAACCTCTTCTAGCAGGG 60.179 60.000 7.04 0.00 33.57 4.45
692 707 0.179097 CGAACCTCTTCTAGCAGGGC 60.179 60.000 7.04 0.00 33.57 5.19
693 708 0.179097 GAACCTCTTCTAGCAGGGCG 60.179 60.000 7.04 0.00 33.57 6.13
694 709 0.905337 AACCTCTTCTAGCAGGGCGT 60.905 55.000 7.04 0.00 33.57 5.68
695 710 0.905337 ACCTCTTCTAGCAGGGCGTT 60.905 55.000 7.04 0.00 33.57 4.84
696 711 0.460987 CCTCTTCTAGCAGGGCGTTG 60.461 60.000 0.00 0.00 0.00 4.10
697 712 0.247736 CTCTTCTAGCAGGGCGTTGT 59.752 55.000 0.00 0.00 0.00 3.32
698 713 0.685097 TCTTCTAGCAGGGCGTTGTT 59.315 50.000 0.00 0.00 0.00 2.83
699 714 1.071699 TCTTCTAGCAGGGCGTTGTTT 59.928 47.619 0.00 0.00 0.00 2.83
700 715 1.880027 CTTCTAGCAGGGCGTTGTTTT 59.120 47.619 0.00 0.00 0.00 2.43
701 716 1.975660 TCTAGCAGGGCGTTGTTTTT 58.024 45.000 0.00 0.00 0.00 1.94
702 717 1.877443 TCTAGCAGGGCGTTGTTTTTC 59.123 47.619 0.00 0.00 0.00 2.29
703 718 0.589223 TAGCAGGGCGTTGTTTTTCG 59.411 50.000 0.00 0.00 0.00 3.46
704 719 1.065109 GCAGGGCGTTGTTTTTCGT 59.935 52.632 0.00 0.00 0.00 3.85
705 720 0.526739 GCAGGGCGTTGTTTTTCGTT 60.527 50.000 0.00 0.00 0.00 3.85
706 721 1.472990 CAGGGCGTTGTTTTTCGTTC 58.527 50.000 0.00 0.00 0.00 3.95
707 722 1.096416 AGGGCGTTGTTTTTCGTTCA 58.904 45.000 0.00 0.00 0.00 3.18
708 723 1.193644 GGGCGTTGTTTTTCGTTCAC 58.806 50.000 0.00 0.00 0.00 3.18
709 724 1.202211 GGGCGTTGTTTTTCGTTCACT 60.202 47.619 0.00 0.00 0.00 3.41
710 725 2.521996 GGCGTTGTTTTTCGTTCACTT 58.478 42.857 0.00 0.00 0.00 3.16
711 726 2.277834 GGCGTTGTTTTTCGTTCACTTG 59.722 45.455 0.00 0.00 0.00 3.16
712 727 2.284232 GCGTTGTTTTTCGTTCACTTGC 60.284 45.455 0.00 0.00 0.00 4.01
713 728 2.911723 CGTTGTTTTTCGTTCACTTGCA 59.088 40.909 0.00 0.00 0.00 4.08
714 729 3.545873 CGTTGTTTTTCGTTCACTTGCAT 59.454 39.130 0.00 0.00 0.00 3.96
715 730 4.546081 CGTTGTTTTTCGTTCACTTGCATG 60.546 41.667 0.00 0.00 0.00 4.06
716 731 2.857152 TGTTTTTCGTTCACTTGCATGC 59.143 40.909 11.82 11.82 0.00 4.06
717 732 3.115554 GTTTTTCGTTCACTTGCATGCT 58.884 40.909 20.33 0.00 0.00 3.79
718 733 2.686558 TTTCGTTCACTTGCATGCTC 57.313 45.000 20.33 0.00 0.00 4.26
719 734 0.874390 TTCGTTCACTTGCATGCTCC 59.126 50.000 20.33 0.00 0.00 4.70
720 735 0.250252 TCGTTCACTTGCATGCTCCA 60.250 50.000 20.33 1.75 0.00 3.86
721 736 0.167470 CGTTCACTTGCATGCTCCAG 59.833 55.000 20.33 14.15 0.00 3.86
722 737 1.242076 GTTCACTTGCATGCTCCAGT 58.758 50.000 20.33 14.80 0.00 4.00
723 738 1.198637 GTTCACTTGCATGCTCCAGTC 59.801 52.381 20.33 3.41 0.00 3.51
724 739 0.689055 TCACTTGCATGCTCCAGTCT 59.311 50.000 20.33 0.00 0.00 3.24
725 740 1.072806 TCACTTGCATGCTCCAGTCTT 59.927 47.619 20.33 0.00 0.00 3.01
726 741 1.199327 CACTTGCATGCTCCAGTCTTG 59.801 52.381 20.33 3.48 0.00 3.02
727 742 0.809385 CTTGCATGCTCCAGTCTTGG 59.191 55.000 20.33 0.00 46.49 3.61
728 743 0.111061 TTGCATGCTCCAGTCTTGGT 59.889 50.000 20.33 0.00 45.26 3.67
729 744 0.607217 TGCATGCTCCAGTCTTGGTG 60.607 55.000 20.33 0.00 45.26 4.17
730 745 1.310933 GCATGCTCCAGTCTTGGTGG 61.311 60.000 11.37 0.00 45.26 4.61
731 746 0.037303 CATGCTCCAGTCTTGGTGGT 59.963 55.000 0.00 0.00 45.26 4.16
732 747 0.773644 ATGCTCCAGTCTTGGTGGTT 59.226 50.000 0.00 0.00 45.26 3.67
733 748 1.429930 TGCTCCAGTCTTGGTGGTTA 58.570 50.000 0.00 0.00 45.26 2.85
734 749 1.347707 TGCTCCAGTCTTGGTGGTTAG 59.652 52.381 0.00 0.00 45.26 2.34
735 750 1.348036 GCTCCAGTCTTGGTGGTTAGT 59.652 52.381 0.00 0.00 45.26 2.24
736 751 2.872038 GCTCCAGTCTTGGTGGTTAGTG 60.872 54.545 0.00 0.00 45.26 2.74
737 752 1.071699 TCCAGTCTTGGTGGTTAGTGC 59.928 52.381 0.00 0.00 45.26 4.40
738 753 1.148310 CAGTCTTGGTGGTTAGTGCG 58.852 55.000 0.00 0.00 0.00 5.34
739 754 0.034896 AGTCTTGGTGGTTAGTGCGG 59.965 55.000 0.00 0.00 0.00 5.69
740 755 1.302192 TCTTGGTGGTTAGTGCGGC 60.302 57.895 0.00 0.00 0.00 6.53
741 756 2.666862 TTGGTGGTTAGTGCGGCG 60.667 61.111 0.51 0.51 0.00 6.46
742 757 3.463728 TTGGTGGTTAGTGCGGCGT 62.464 57.895 9.37 0.00 0.00 5.68
743 758 3.419759 GGTGGTTAGTGCGGCGTG 61.420 66.667 9.37 0.00 0.00 5.34
744 759 2.663852 GTGGTTAGTGCGGCGTGT 60.664 61.111 9.37 0.00 0.00 4.49
745 760 1.373246 GTGGTTAGTGCGGCGTGTA 60.373 57.895 9.37 0.00 0.00 2.90
746 761 1.373246 TGGTTAGTGCGGCGTGTAC 60.373 57.895 9.37 5.85 0.00 2.90
747 762 1.373246 GGTTAGTGCGGCGTGTACA 60.373 57.895 9.37 0.00 35.35 2.90
748 763 1.349259 GGTTAGTGCGGCGTGTACAG 61.349 60.000 9.37 0.00 35.35 2.74
749 764 1.080366 TTAGTGCGGCGTGTACAGG 60.080 57.895 9.37 11.20 35.35 4.00
750 765 3.636313 TAGTGCGGCGTGTACAGGC 62.636 63.158 28.05 28.05 41.10 4.85
752 767 4.610714 TGCGGCGTGTACAGGCAA 62.611 61.111 34.00 20.17 43.38 4.52
753 768 3.124921 GCGGCGTGTACAGGCAAT 61.125 61.111 34.00 0.00 43.38 3.56
754 769 2.784596 CGGCGTGTACAGGCAATG 59.215 61.111 34.00 22.18 43.38 2.82
755 770 2.485122 GGCGTGTACAGGCAATGC 59.515 61.111 34.00 17.94 43.38 3.56
756 771 2.331893 GGCGTGTACAGGCAATGCA 61.332 57.895 34.00 0.00 43.38 3.96
757 772 1.135315 GCGTGTACAGGCAATGCAG 59.865 57.895 30.20 0.90 41.43 4.41
758 773 1.796151 CGTGTACAGGCAATGCAGG 59.204 57.895 7.79 0.02 0.00 4.85
759 774 0.955428 CGTGTACAGGCAATGCAGGT 60.955 55.000 7.79 6.91 0.00 4.00
760 775 1.247567 GTGTACAGGCAATGCAGGTT 58.752 50.000 7.79 0.00 0.00 3.50
761 776 2.432444 GTGTACAGGCAATGCAGGTTA 58.568 47.619 7.79 0.00 0.00 2.85
762 777 3.016736 GTGTACAGGCAATGCAGGTTAT 58.983 45.455 7.79 0.00 0.00 1.89
763 778 3.443681 GTGTACAGGCAATGCAGGTTATT 59.556 43.478 7.79 0.00 0.00 1.40
764 779 3.443329 TGTACAGGCAATGCAGGTTATTG 59.557 43.478 7.79 0.00 38.30 1.90
765 780 1.826720 ACAGGCAATGCAGGTTATTGG 59.173 47.619 7.79 0.00 36.33 3.16
766 781 1.826720 CAGGCAATGCAGGTTATTGGT 59.173 47.619 7.79 0.00 36.33 3.67
767 782 2.234414 CAGGCAATGCAGGTTATTGGTT 59.766 45.455 7.79 0.00 36.33 3.67
768 783 2.497273 AGGCAATGCAGGTTATTGGTTC 59.503 45.455 7.79 0.00 36.33 3.62
769 784 2.529151 GCAATGCAGGTTATTGGTTCG 58.471 47.619 0.00 0.00 36.33 3.95
770 785 2.163412 GCAATGCAGGTTATTGGTTCGA 59.837 45.455 0.00 0.00 36.33 3.71
771 786 3.181487 GCAATGCAGGTTATTGGTTCGAT 60.181 43.478 0.00 0.00 36.33 3.59
772 787 4.036262 GCAATGCAGGTTATTGGTTCGATA 59.964 41.667 0.00 0.00 36.33 2.92
773 788 5.510671 CAATGCAGGTTATTGGTTCGATAC 58.489 41.667 0.00 0.00 33.08 2.24
774 789 4.209307 TGCAGGTTATTGGTTCGATACA 57.791 40.909 0.00 0.00 0.00 2.29
775 790 4.776349 TGCAGGTTATTGGTTCGATACAT 58.224 39.130 0.00 0.00 0.00 2.29
776 791 4.574421 TGCAGGTTATTGGTTCGATACATG 59.426 41.667 0.00 0.00 0.00 3.21
777 792 4.024048 GCAGGTTATTGGTTCGATACATGG 60.024 45.833 0.00 0.00 0.00 3.66
778 793 5.364778 CAGGTTATTGGTTCGATACATGGA 58.635 41.667 0.00 0.00 0.00 3.41
779 794 5.466728 CAGGTTATTGGTTCGATACATGGAG 59.533 44.000 0.00 0.00 0.00 3.86
780 795 4.213482 GGTTATTGGTTCGATACATGGAGC 59.787 45.833 0.00 0.00 0.00 4.70
781 796 3.845781 ATTGGTTCGATACATGGAGCT 57.154 42.857 0.00 0.00 0.00 4.09
782 797 3.627395 TTGGTTCGATACATGGAGCTT 57.373 42.857 0.00 0.00 0.00 3.74
783 798 2.905075 TGGTTCGATACATGGAGCTTG 58.095 47.619 0.00 0.00 0.00 4.01
784 799 1.599542 GGTTCGATACATGGAGCTTGC 59.400 52.381 0.00 0.00 0.00 4.01
785 800 2.555199 GTTCGATACATGGAGCTTGCT 58.445 47.619 0.00 0.00 0.00 3.91
786 801 2.229675 TCGATACATGGAGCTTGCTG 57.770 50.000 0.00 0.00 0.00 4.41
787 802 1.482182 TCGATACATGGAGCTTGCTGT 59.518 47.619 0.00 0.00 0.00 4.40
788 803 2.093500 TCGATACATGGAGCTTGCTGTT 60.093 45.455 0.00 0.00 0.00 3.16
789 804 2.679837 CGATACATGGAGCTTGCTGTTT 59.320 45.455 0.00 0.00 0.00 2.83
790 805 3.127548 CGATACATGGAGCTTGCTGTTTT 59.872 43.478 0.00 0.00 0.00 2.43
791 806 4.379813 CGATACATGGAGCTTGCTGTTTTT 60.380 41.667 0.00 0.00 0.00 1.94
792 807 3.102052 ACATGGAGCTTGCTGTTTTTG 57.898 42.857 0.00 0.00 0.00 2.44
793 808 1.796459 CATGGAGCTTGCTGTTTTTGC 59.204 47.619 0.00 0.00 0.00 3.68
794 809 0.248990 TGGAGCTTGCTGTTTTTGCG 60.249 50.000 0.00 0.00 0.00 4.85
795 810 0.030638 GGAGCTTGCTGTTTTTGCGA 59.969 50.000 0.00 0.00 0.00 5.10
796 811 1.336240 GGAGCTTGCTGTTTTTGCGAT 60.336 47.619 0.00 0.00 0.00 4.58
797 812 2.397549 GAGCTTGCTGTTTTTGCGATT 58.602 42.857 0.00 0.00 0.00 3.34
798 813 2.397549 AGCTTGCTGTTTTTGCGATTC 58.602 42.857 0.00 0.00 0.00 2.52
799 814 2.035066 AGCTTGCTGTTTTTGCGATTCT 59.965 40.909 0.00 0.00 0.00 2.40
800 815 2.796593 GCTTGCTGTTTTTGCGATTCTT 59.203 40.909 0.00 0.00 0.00 2.52
801 816 3.245990 GCTTGCTGTTTTTGCGATTCTTT 59.754 39.130 0.00 0.00 0.00 2.52
802 817 4.260334 GCTTGCTGTTTTTGCGATTCTTTT 60.260 37.500 0.00 0.00 0.00 2.27
803 818 5.051106 GCTTGCTGTTTTTGCGATTCTTTTA 60.051 36.000 0.00 0.00 0.00 1.52
804 819 6.346838 GCTTGCTGTTTTTGCGATTCTTTTAT 60.347 34.615 0.00 0.00 0.00 1.40
805 820 6.689178 TGCTGTTTTTGCGATTCTTTTATC 57.311 33.333 0.00 0.00 0.00 1.75
806 821 6.446318 TGCTGTTTTTGCGATTCTTTTATCT 58.554 32.000 0.00 0.00 0.00 1.98
807 822 6.582295 TGCTGTTTTTGCGATTCTTTTATCTC 59.418 34.615 0.00 0.00 0.00 2.75
808 823 6.237045 GCTGTTTTTGCGATTCTTTTATCTCG 60.237 38.462 0.00 0.00 0.00 4.04
812 827 3.836229 GCGATTCTTTTATCTCGCGAA 57.164 42.857 11.33 1.32 45.65 4.70
813 828 3.777845 GCGATTCTTTTATCTCGCGAAG 58.222 45.455 11.33 3.14 45.65 3.79
869 884 9.362911 GCGTATATATACACGTACAGCTAATAC 57.637 37.037 20.24 0.00 40.25 1.89
870 885 9.855361 CGTATATATACACGTACAGCTAATACC 57.145 37.037 20.24 0.00 33.56 2.73
889 904 3.708451 ACCTAAGGCCCAGTAAAAATGG 58.292 45.455 0.00 0.00 37.58 3.16
1332 1367 4.087892 ATCGGCACCAAGCTCGCT 62.088 61.111 0.00 0.00 44.79 4.93
1760 1795 5.695851 ATAAACAATGGGAGAATCGATGC 57.304 39.130 0.00 0.00 34.37 3.91
1902 1937 2.890371 GTGGCCGTATCGAGTGGT 59.110 61.111 0.00 0.00 0.00 4.16
1905 1940 1.135024 GTGGCCGTATCGAGTGGTTTA 60.135 52.381 0.00 0.00 0.00 2.01
1917 1952 3.490249 CGAGTGGTTTAGCGATGGATGTA 60.490 47.826 0.00 0.00 0.00 2.29
1960 1995 6.003859 TCAACTTTTACTGTAAGGTTGGGA 57.996 37.500 27.66 17.52 39.30 4.37
1974 2009 3.785859 GGGATGGTCGAGGCTGCA 61.786 66.667 0.50 0.00 0.00 4.41
2127 2162 1.383523 TTGATTGTGTGACGTTGGCA 58.616 45.000 0.00 0.00 0.00 4.92
2203 2238 3.056107 TCACGGCTATGCAGTTAGAAACT 60.056 43.478 0.00 0.00 44.06 2.66
2247 2282 2.012673 GCTTGTGGCCTGATAGAGTTG 58.987 52.381 3.32 0.00 34.27 3.16
2258 2293 7.176865 TGGCCTGATAGAGTTGTATATGAGTAC 59.823 40.741 3.32 0.00 0.00 2.73
2260 2295 8.455682 GCCTGATAGAGTTGTATATGAGTACTC 58.544 40.741 16.32 16.32 36.38 2.59
2268 2303 7.783042 AGTTGTATATGAGTACTCAAAGGACC 58.217 38.462 28.43 14.65 43.58 4.46
2281 2316 3.047280 GGACCGAACATGCACGCA 61.047 61.111 0.00 0.00 0.00 5.24
2294 2329 3.121030 ACGCAGGCTGTTCGATGC 61.121 61.111 19.10 2.20 35.32 3.91
2317 2352 1.337167 TGAGTTGCAGAGACATGGTCG 60.337 52.381 0.00 0.00 37.67 4.79
2398 2433 6.814506 AGGTTTTATATCAGATGCAGCATC 57.185 37.500 25.69 25.69 40.80 3.91
2468 2503 8.838365 AGCTTTTATGAAGAATGAGCAGATTAG 58.162 33.333 0.00 0.00 0.00 1.73
2615 2650 2.030213 GCAAGATGCAAGAAGTAGAGCG 59.970 50.000 0.00 0.00 44.26 5.03
2673 2708 1.651240 CCATGAAGGCTGCAACCTCG 61.651 60.000 9.60 0.00 39.93 4.63
2739 2774 3.192633 GCCTATTGTTGTCCAAATCCGTT 59.807 43.478 0.00 0.00 36.44 4.44
2857 2892 6.458751 GCAGCTGCACATAGTTACATTACATT 60.459 38.462 33.36 0.00 41.59 2.71
2858 2893 7.254761 GCAGCTGCACATAGTTACATTACATTA 60.255 37.037 33.36 0.00 41.59 1.90
2859 2894 8.064222 CAGCTGCACATAGTTACATTACATTAC 58.936 37.037 0.00 0.00 0.00 1.89
2860 2895 7.768582 AGCTGCACATAGTTACATTACATTACA 59.231 33.333 1.02 0.00 0.00 2.41
2861 2896 8.559536 GCTGCACATAGTTACATTACATTACAT 58.440 33.333 0.00 0.00 0.00 2.29
3076 3114 5.801531 TTTTAGAGCCTACTCACAAGTCA 57.198 39.130 0.00 0.00 46.09 3.41
3077 3115 4.785511 TTAGAGCCTACTCACAAGTCAC 57.214 45.455 0.00 0.00 46.09 3.67
3078 3116 2.598565 AGAGCCTACTCACAAGTCACA 58.401 47.619 0.00 0.00 46.09 3.58
3079 3117 2.965831 AGAGCCTACTCACAAGTCACAA 59.034 45.455 0.00 0.00 46.09 3.33
3080 3118 3.060602 GAGCCTACTCACAAGTCACAAC 58.939 50.000 0.00 0.00 42.93 3.32
3081 3119 2.700897 AGCCTACTCACAAGTCACAACT 59.299 45.455 0.00 0.00 36.92 3.16
3082 3120 3.060602 GCCTACTCACAAGTCACAACTC 58.939 50.000 0.00 0.00 36.92 3.01
3083 3121 3.309388 CCTACTCACAAGTCACAACTCG 58.691 50.000 0.00 0.00 36.92 4.18
3084 3122 2.961526 ACTCACAAGTCACAACTCGT 57.038 45.000 0.00 0.00 33.48 4.18
3085 3123 2.810650 ACTCACAAGTCACAACTCGTC 58.189 47.619 0.00 0.00 33.48 4.20
3086 3124 2.128035 CTCACAAGTCACAACTCGTCC 58.872 52.381 0.00 0.00 33.48 4.79
3087 3125 1.478916 TCACAAGTCACAACTCGTCCA 59.521 47.619 0.00 0.00 33.48 4.02
3088 3126 1.860950 CACAAGTCACAACTCGTCCAG 59.139 52.381 0.00 0.00 33.48 3.86
3089 3127 1.202533 ACAAGTCACAACTCGTCCAGG 60.203 52.381 0.00 0.00 33.48 4.45
3090 3128 0.393077 AAGTCACAACTCGTCCAGGG 59.607 55.000 0.00 0.00 33.48 4.45
3091 3129 0.469331 AGTCACAACTCGTCCAGGGA 60.469 55.000 0.00 0.00 0.00 4.20
3092 3130 0.038159 GTCACAACTCGTCCAGGGAG 60.038 60.000 0.00 0.00 37.54 4.30
3093 3131 0.178973 TCACAACTCGTCCAGGGAGA 60.179 55.000 0.00 0.00 35.49 3.71
3094 3132 0.679505 CACAACTCGTCCAGGGAGAA 59.320 55.000 0.00 0.00 35.49 2.87
3095 3133 1.070134 CACAACTCGTCCAGGGAGAAA 59.930 52.381 0.00 0.00 35.49 2.52
3096 3134 1.766496 ACAACTCGTCCAGGGAGAAAA 59.234 47.619 0.00 0.00 35.49 2.29
3097 3135 2.171870 ACAACTCGTCCAGGGAGAAAAA 59.828 45.455 0.00 0.00 35.49 1.94
3168 3206 4.421479 CGCCGGCAGTCGTCTTCT 62.421 66.667 28.98 0.00 37.11 2.85
3169 3207 2.048127 GCCGGCAGTCGTCTTCTT 60.048 61.111 24.80 0.00 37.11 2.52
3170 3208 2.095252 GCCGGCAGTCGTCTTCTTC 61.095 63.158 24.80 0.00 37.11 2.87
3171 3209 1.801913 CCGGCAGTCGTCTTCTTCG 60.802 63.158 0.00 0.00 37.11 3.79
3172 3210 2.437343 CGGCAGTCGTCTTCTTCGC 61.437 63.158 0.00 0.00 0.00 4.70
3173 3211 2.437343 GGCAGTCGTCTTCTTCGCG 61.437 63.158 0.00 0.00 0.00 5.87
3174 3212 3.060663 GCAGTCGTCTTCTTCGCGC 62.061 63.158 0.00 0.00 0.00 6.86
3175 3213 2.126424 AGTCGTCTTCTTCGCGCC 60.126 61.111 0.00 0.00 0.00 6.53
3176 3214 2.126424 GTCGTCTTCTTCGCGCCT 60.126 61.111 0.00 0.00 0.00 5.52
3177 3215 2.153322 GTCGTCTTCTTCGCGCCTC 61.153 63.158 0.00 0.00 0.00 4.70
3178 3216 2.881352 CGTCTTCTTCGCGCCTCC 60.881 66.667 0.00 0.00 0.00 4.30
3179 3217 2.509561 GTCTTCTTCGCGCCTCCC 60.510 66.667 0.00 0.00 0.00 4.30
3180 3218 2.680352 TCTTCTTCGCGCCTCCCT 60.680 61.111 0.00 0.00 0.00 4.20
3181 3219 2.202810 CTTCTTCGCGCCTCCCTC 60.203 66.667 0.00 0.00 0.00 4.30
3182 3220 2.680352 TTCTTCGCGCCTCCCTCT 60.680 61.111 0.00 0.00 0.00 3.69
3183 3221 2.621371 CTTCTTCGCGCCTCCCTCTC 62.621 65.000 0.00 0.00 0.00 3.20
3184 3222 4.560856 CTTCGCGCCTCCCTCTCG 62.561 72.222 0.00 0.00 0.00 4.04
3196 3234 4.544689 CTCTCGCCGCCGTCAGAG 62.545 72.222 0.00 0.00 31.77 3.35
3251 3289 4.516195 GCGGGGCCTCGTCTTCTC 62.516 72.222 28.92 4.23 0.00 2.87
3252 3290 3.839432 CGGGGCCTCGTCTTCTCC 61.839 72.222 19.58 0.00 0.00 3.71
3253 3291 2.683933 GGGGCCTCGTCTTCTCCA 60.684 66.667 0.84 0.00 0.00 3.86
3254 3292 2.726351 GGGGCCTCGTCTTCTCCAG 61.726 68.421 0.84 0.00 0.00 3.86
3255 3293 2.726351 GGGCCTCGTCTTCTCCAGG 61.726 68.421 0.84 0.00 0.00 4.45
3256 3294 1.985116 GGCCTCGTCTTCTCCAGGT 60.985 63.158 0.00 0.00 0.00 4.00
3257 3295 1.513622 GCCTCGTCTTCTCCAGGTC 59.486 63.158 0.00 0.00 0.00 3.85
3258 3296 1.803943 CCTCGTCTTCTCCAGGTCG 59.196 63.158 0.00 0.00 0.00 4.79
3259 3297 1.137825 CTCGTCTTCTCCAGGTCGC 59.862 63.158 0.00 0.00 0.00 5.19
3260 3298 2.202492 CGTCTTCTCCAGGTCGCG 60.202 66.667 0.00 0.00 0.00 5.87
3261 3299 2.182030 GTCTTCTCCAGGTCGCGG 59.818 66.667 6.13 0.00 0.00 6.46
3262 3300 3.068691 TCTTCTCCAGGTCGCGGG 61.069 66.667 6.13 0.00 0.00 6.13
3263 3301 4.821589 CTTCTCCAGGTCGCGGGC 62.822 72.222 6.13 0.00 0.00 6.13
3280 3318 4.477975 CGTCCTCGTGTCGGGCTC 62.478 72.222 0.00 0.00 0.00 4.70
3281 3319 4.477975 GTCCTCGTGTCGGGCTCG 62.478 72.222 0.00 0.00 35.64 5.03
3283 3321 4.778415 CCTCGTGTCGGGCTCGTG 62.778 72.222 5.57 1.74 37.69 4.35
3331 3369 3.826754 CTGCGCTAGTGCTCGGGA 61.827 66.667 27.36 7.42 36.97 5.14
3332 3370 3.764810 CTGCGCTAGTGCTCGGGAG 62.765 68.421 27.36 13.28 36.97 4.30
3346 3384 3.787001 GGAGCTCCCAACCTCCGG 61.787 72.222 23.19 0.00 38.38 5.14
3347 3385 4.475135 GAGCTCCCAACCTCCGGC 62.475 72.222 0.87 0.00 0.00 6.13
3389 3427 4.838152 CGCCCGGATCTGGTGTGG 62.838 72.222 19.51 5.05 0.00 4.17
3390 3428 3.717294 GCCCGGATCTGGTGTGGT 61.717 66.667 19.51 0.00 0.00 4.16
3391 3429 2.268920 CCCGGATCTGGTGTGGTG 59.731 66.667 19.51 0.00 0.00 4.17
3392 3430 2.436646 CCGGATCTGGTGTGGTGC 60.437 66.667 12.93 0.00 0.00 5.01
3393 3431 2.665000 CGGATCTGGTGTGGTGCT 59.335 61.111 0.00 0.00 0.00 4.40
3394 3432 1.742880 CGGATCTGGTGTGGTGCTG 60.743 63.158 0.00 0.00 0.00 4.41
3395 3433 1.679311 GGATCTGGTGTGGTGCTGA 59.321 57.895 0.00 0.00 0.00 4.26
3396 3434 0.392193 GGATCTGGTGTGGTGCTGAG 60.392 60.000 0.00 0.00 0.00 3.35
3397 3435 0.322975 GATCTGGTGTGGTGCTGAGT 59.677 55.000 0.00 0.00 0.00 3.41
3398 3436 0.035881 ATCTGGTGTGGTGCTGAGTG 59.964 55.000 0.00 0.00 0.00 3.51
3399 3437 2.203195 TGGTGTGGTGCTGAGTGC 60.203 61.111 0.00 0.00 43.25 4.40
3400 3438 3.349006 GGTGTGGTGCTGAGTGCG 61.349 66.667 0.00 0.00 46.63 5.34
3480 3518 2.258591 GTCTGCACGGCTCTTCGA 59.741 61.111 0.00 0.00 0.00 3.71
3481 3519 2.089349 GTCTGCACGGCTCTTCGAC 61.089 63.158 0.00 0.00 0.00 4.20
3492 3530 2.183858 CTCTTCGACGTGTGGCTCGA 62.184 60.000 0.00 0.00 37.14 4.04
3499 3537 4.152625 GTGTGGCTCGATGTGCGC 62.153 66.667 0.00 0.00 40.61 6.09
3523 3561 1.582968 GGTGCAGTGGCTGATGTTG 59.417 57.895 0.00 0.00 41.91 3.33
3529 3567 2.048603 GTGGCTGATGTTGGGAGGC 61.049 63.158 0.00 0.00 0.00 4.70
3530 3568 2.356278 GGCTGATGTTGGGAGGCA 59.644 61.111 0.00 0.00 32.68 4.75
3557 3595 3.884774 GGGTGCAGGTGTGGTGGA 61.885 66.667 0.00 0.00 0.00 4.02
3565 3603 1.078143 GGTGTGGTGGATCTGAGGC 60.078 63.158 0.00 0.00 0.00 4.70
3569 3607 0.107459 GTGGTGGATCTGAGGCTTCC 60.107 60.000 0.00 0.00 0.00 3.46
3588 3626 2.032681 GTCTCCGGCAGGCTTGTT 59.967 61.111 0.00 0.00 37.47 2.83
3592 3636 3.604667 CCGGCAGGCTTGTTTGCA 61.605 61.111 0.00 0.00 42.02 4.08
3722 3782 4.928398 CAGTGCTCGGATCTGCTT 57.072 55.556 0.00 0.00 0.00 3.91
3730 3790 3.667448 CGGATCTGCTTGGATTCGA 57.333 52.632 9.00 0.00 44.78 3.71
3806 3868 1.153188 CAGCGGCACCATGGTCATA 60.153 57.895 16.53 0.00 0.00 2.15
3886 3948 2.947127 AATCCCTAGCTTCAGATGGC 57.053 50.000 0.00 0.00 0.00 4.40
3887 3949 2.115337 ATCCCTAGCTTCAGATGGCT 57.885 50.000 0.00 4.20 41.92 4.75
3900 3962 2.715532 GATGGCTGAAGCGGGCGATA 62.716 60.000 0.00 0.00 43.26 2.92
3936 3998 2.814336 GTTTCCTTCTTTGAGGCATCGT 59.186 45.455 0.00 0.00 36.71 3.73
3977 4039 2.416747 CAGTTTGCACGGATCTCTTCA 58.583 47.619 0.00 0.00 0.00 3.02
3990 4052 0.250234 CTCTTCATCGTCAGGGGCAA 59.750 55.000 0.00 0.00 0.00 4.52
4031 4093 2.304470 TCCGGATGGTTTCTGATTGTGA 59.696 45.455 0.00 0.00 36.30 3.58
4057 4119 0.462047 ATGGCGATCTCGGGAACAAC 60.462 55.000 0.00 0.00 40.23 3.32
4118 4180 0.831711 GGTTGGGTGGCATCCTTGTT 60.832 55.000 19.39 0.00 0.00 2.83
4119 4181 1.047801 GTTGGGTGGCATCCTTGTTT 58.952 50.000 19.39 0.00 0.00 2.83
4254 4319 1.974875 CTGAGCATTGTGGGCTGCA 60.975 57.895 0.50 0.00 42.78 4.41
4390 4455 3.547513 GGCGGCCCCGAGAGTATT 61.548 66.667 8.12 0.00 42.83 1.89
4398 4463 2.385803 CCCCGAGAGTATTACTGTGGT 58.614 52.381 0.00 0.00 0.00 4.16
4402 4467 3.695060 CCGAGAGTATTACTGTGGTGACT 59.305 47.826 0.00 0.00 0.00 3.41
4411 4476 8.327271 AGTATTACTGTGGTGACTAGACTTCTA 58.673 37.037 0.00 0.00 0.00 2.10
4480 4545 1.031029 GTAGTCGGCTCTTCTCCGGT 61.031 60.000 0.00 0.00 46.43 5.28
4491 4556 1.393487 TTCTCCGGTGTGTCCACGAA 61.393 55.000 0.00 0.00 42.80 3.85
4494 4559 0.320073 TCCGGTGTGTCCACGAATTC 60.320 55.000 0.00 0.00 42.80 2.17
4559 4627 2.889045 GCCCTATGGTGTACGATGACTA 59.111 50.000 0.00 0.00 0.00 2.59
4622 4691 2.427095 GTGCCTGGTTTTGTTCTTCTGT 59.573 45.455 0.00 0.00 0.00 3.41
4630 4699 4.096382 GGTTTTGTTCTTCTGTGCTCTTCA 59.904 41.667 0.00 0.00 0.00 3.02
4632 4701 6.268566 GTTTTGTTCTTCTGTGCTCTTCATT 58.731 36.000 0.00 0.00 0.00 2.57
4653 4722 3.112709 GTCGGAGCTGCGTTGTCC 61.113 66.667 27.20 7.75 0.00 4.02
4658 4727 3.858868 GAGCTGCGTTGTCCGGTCA 62.859 63.158 0.00 0.00 36.94 4.02
4933 5004 1.173043 TTTGCTGGGCGGATTACTTG 58.827 50.000 0.00 0.00 0.00 3.16
5062 5371 5.994887 TTGTACGTTTACTTGCACTGAAT 57.005 34.783 0.00 0.00 0.00 2.57
5079 5388 7.823799 TGCACTGAATGAACTCTGATAAACATA 59.176 33.333 0.00 0.00 0.00 2.29
5261 5570 0.912487 TCCTACCCAATCCAAGGCGT 60.912 55.000 0.00 0.00 0.00 5.68
5338 5648 4.643387 AAGTGGGCCGCTCGCTTT 62.643 61.111 21.87 0.23 37.74 3.51
5363 5673 2.159517 GCACAACGAATGATGGAAGGAC 60.160 50.000 0.00 0.00 0.00 3.85
5466 5797 4.128925 AGTCTCTGCTTTGATGCGATTA 57.871 40.909 0.00 0.00 35.36 1.75
5564 5932 1.071228 TCATCATGCGGGAGATCAAGG 59.929 52.381 0.00 0.00 0.00 3.61
5569 5937 1.146930 GCGGGAGATCAAGGCATGA 59.853 57.895 0.00 0.00 43.67 3.07
5570 5938 0.883814 GCGGGAGATCAAGGCATGAG 60.884 60.000 0.00 0.00 42.53 2.90
5602 5972 6.440436 GCATCTAGAGTAGTAGCAAACCTAC 58.560 44.000 0.00 0.00 45.55 3.18
5618 5988 4.803098 ACCTACGTAGATTGTGAGCTTT 57.197 40.909 24.15 0.00 0.00 3.51
5622 5992 8.179509 ACCTACGTAGATTGTGAGCTTTATAT 57.820 34.615 24.15 0.00 0.00 0.86
5635 6006 6.258947 GTGAGCTTTATATTTCGAGCCTCTTT 59.741 38.462 0.00 0.00 35.79 2.52
5637 6008 7.985184 TGAGCTTTATATTTCGAGCCTCTTTAA 59.015 33.333 0.00 0.00 35.79 1.52
5638 6009 8.371770 AGCTTTATATTTCGAGCCTCTTTAAG 57.628 34.615 0.00 0.00 35.79 1.85
5639 6010 8.204836 AGCTTTATATTTCGAGCCTCTTTAAGA 58.795 33.333 0.00 0.00 35.79 2.10
5640 6011 8.491950 GCTTTATATTTCGAGCCTCTTTAAGAG 58.508 37.037 14.57 14.57 41.96 2.85
5641 6012 9.751542 CTTTATATTTCGAGCCTCTTTAAGAGA 57.248 33.333 22.19 1.86 45.07 3.10
5644 6015 6.917217 ATTTCGAGCCTCTTTAAGAGATTG 57.083 37.500 22.19 13.84 45.07 2.67
5645 6016 5.407407 TTCGAGCCTCTTTAAGAGATTGT 57.593 39.130 22.19 4.57 45.07 2.71
5646 6017 5.407407 TCGAGCCTCTTTAAGAGATTGTT 57.593 39.130 22.19 4.83 45.07 2.83
5647 6018 5.794894 TCGAGCCTCTTTAAGAGATTGTTT 58.205 37.500 22.19 2.31 45.07 2.83
5648 6019 6.231211 TCGAGCCTCTTTAAGAGATTGTTTT 58.769 36.000 22.19 1.03 45.07 2.43
5649 6020 6.369065 TCGAGCCTCTTTAAGAGATTGTTTTC 59.631 38.462 22.19 8.30 45.07 2.29
5650 6021 6.402658 CGAGCCTCTTTAAGAGATTGTTTTCC 60.403 42.308 22.19 1.87 45.07 3.13
5651 6022 6.547402 AGCCTCTTTAAGAGATTGTTTTCCT 58.453 36.000 22.19 2.95 45.07 3.36
5652 6023 6.657117 AGCCTCTTTAAGAGATTGTTTTCCTC 59.343 38.462 22.19 0.00 45.07 3.71
5653 6024 6.127869 GCCTCTTTAAGAGATTGTTTTCCTCC 60.128 42.308 22.19 0.00 45.07 4.30
5654 6025 7.171653 CCTCTTTAAGAGATTGTTTTCCTCCT 58.828 38.462 22.19 0.00 45.07 3.69
5655 6026 7.335673 CCTCTTTAAGAGATTGTTTTCCTCCTC 59.664 40.741 22.19 0.00 45.07 3.71
5656 6027 7.745717 TCTTTAAGAGATTGTTTTCCTCCTCA 58.254 34.615 0.00 0.00 0.00 3.86
5657 6028 8.217799 TCTTTAAGAGATTGTTTTCCTCCTCAA 58.782 33.333 0.00 0.00 0.00 3.02
5658 6029 7.986085 TTAAGAGATTGTTTTCCTCCTCAAG 57.014 36.000 0.00 0.00 0.00 3.02
5659 6030 5.832539 AGAGATTGTTTTCCTCCTCAAGA 57.167 39.130 0.00 0.00 0.00 3.02
5660 6031 6.192970 AGAGATTGTTTTCCTCCTCAAGAA 57.807 37.500 0.00 0.00 0.00 2.52
5661 6032 6.605119 AGAGATTGTTTTCCTCCTCAAGAAA 58.395 36.000 0.00 0.00 0.00 2.52
5662 6033 7.062957 AGAGATTGTTTTCCTCCTCAAGAAAA 58.937 34.615 0.00 0.00 39.12 2.29
5663 6034 7.561356 AGAGATTGTTTTCCTCCTCAAGAAAAA 59.439 33.333 0.00 0.00 42.04 1.94
5664 6035 8.255111 AGATTGTTTTCCTCCTCAAGAAAAAT 57.745 30.769 0.00 0.00 42.04 1.82
5665 6036 9.367160 AGATTGTTTTCCTCCTCAAGAAAAATA 57.633 29.630 0.00 0.00 42.04 1.40
5666 6037 9.411801 GATTGTTTTCCTCCTCAAGAAAAATAC 57.588 33.333 0.00 0.00 42.04 1.89
5673 6044 5.883115 CCTCCTCAAGAAAAATACTTCCTCC 59.117 44.000 0.00 0.00 0.00 4.30
5677 6048 5.816682 TCAAGAAAAATACTTCCTCCTCCC 58.183 41.667 0.00 0.00 0.00 4.30
5681 6052 0.031010 AATACTTCCTCCTCCCGCCT 60.031 55.000 0.00 0.00 0.00 5.52
5682 6053 0.858369 ATACTTCCTCCTCCCGCCTA 59.142 55.000 0.00 0.00 0.00 3.93
5685 6056 3.292481 TTCCTCCTCCCGCCTACGT 62.292 63.158 0.00 0.00 37.70 3.57
5697 6068 2.353607 CTACGTCGCCGCTGATCC 60.354 66.667 0.00 0.00 37.70 3.36
6105 6476 5.636543 AGAGACCCGTTATCGTTTTTGTTAG 59.363 40.000 0.00 0.00 35.01 2.34
6106 6477 4.692155 AGACCCGTTATCGTTTTTGTTAGG 59.308 41.667 0.00 0.00 35.01 2.69
6107 6478 4.388485 ACCCGTTATCGTTTTTGTTAGGT 58.612 39.130 0.00 0.00 35.01 3.08
6108 6479 4.821260 ACCCGTTATCGTTTTTGTTAGGTT 59.179 37.500 0.00 0.00 35.01 3.50
6109 6480 5.049474 ACCCGTTATCGTTTTTGTTAGGTTC 60.049 40.000 0.00 0.00 35.01 3.62
6110 6481 5.049543 CCCGTTATCGTTTTTGTTAGGTTCA 60.050 40.000 0.00 0.00 35.01 3.18
6115 6486 5.294050 TCGTTTTTGTTAGGTTCAACGTT 57.706 34.783 0.00 0.00 38.47 3.99
6126 6497 2.101750 GGTTCAACGTTTTGGTTGGGAT 59.898 45.455 0.00 0.00 45.66 3.85
6158 6546 3.375699 AGGAATAATGTCCCTCACGTCT 58.624 45.455 0.00 0.00 38.59 4.18
6162 6550 6.099845 AGGAATAATGTCCCTCACGTCTTATT 59.900 38.462 0.00 0.00 38.59 1.40
6215 6603 1.072331 GGATGTGTGGAGGTGTGTCTT 59.928 52.381 0.00 0.00 0.00 3.01
6224 6612 0.966920 AGGTGTGTCTTCGTCGGATT 59.033 50.000 0.00 0.00 0.00 3.01
6227 6615 1.385743 GTGTGTCTTCGTCGGATTTCG 59.614 52.381 0.00 0.00 40.90 3.46
6228 6616 1.001048 TGTGTCTTCGTCGGATTTCGT 60.001 47.619 0.00 0.00 40.32 3.85
6233 6621 0.533491 TTCGTCGGATTTCGTGGGAT 59.467 50.000 0.00 0.00 40.32 3.85
6249 6637 0.462047 GGATTCGATCGGTGCTGGTT 60.462 55.000 16.41 0.00 0.00 3.67
6296 6685 5.120519 ACTTTTGTTTGTCTTCGTTCGTGTA 59.879 36.000 0.00 0.00 0.00 2.90
6301 6690 5.978919 TGTTTGTCTTCGTTCGTGTAGTTAT 59.021 36.000 0.00 0.00 0.00 1.89
6309 6698 3.123959 CGTTCGTGTAGTTATGGGTTTGG 59.876 47.826 0.00 0.00 0.00 3.28
6316 6705 5.182570 GTGTAGTTATGGGTTTGGTCTTTCC 59.817 44.000 0.00 0.00 0.00 3.13
6323 6712 4.076394 TGGGTTTGGTCTTTCCGATTTAG 58.924 43.478 0.00 0.00 39.52 1.85
6333 6722 7.177921 TGGTCTTTCCGATTTAGAACTCTCTTA 59.822 37.037 0.00 0.00 39.52 2.10
6351 6740 4.513442 TCTTAATTAGCGATGGTTGCTGT 58.487 39.130 1.98 0.00 43.85 4.40
6364 6753 2.974698 GCTGTTCTGGTGCGCTGT 60.975 61.111 9.73 0.00 0.00 4.40
6365 6754 2.959357 GCTGTTCTGGTGCGCTGTC 61.959 63.158 9.73 0.00 0.00 3.51
6367 6756 2.031163 GTTCTGGTGCGCTGTCCT 59.969 61.111 9.73 0.00 0.00 3.85
6370 6759 1.165907 TTCTGGTGCGCTGTCCTTTG 61.166 55.000 9.73 4.29 0.00 2.77
6371 6760 3.259425 CTGGTGCGCTGTCCTTTGC 62.259 63.158 9.73 0.00 0.00 3.68
6402 6817 1.073199 CAAGGTTTGCCCGACTCCT 59.927 57.895 0.00 0.00 38.74 3.69
6415 6830 2.284921 CTCCTGTGAGGGAGGGCA 60.285 66.667 2.84 0.00 46.63 5.36
6420 6835 0.549950 CTGTGAGGGAGGGCAATGAT 59.450 55.000 0.00 0.00 0.00 2.45
6429 6844 2.188829 GGGCAATGATAGCAGCGCA 61.189 57.895 11.47 0.00 39.41 6.09
6458 6873 1.339929 TCGCTTCAGTGCTTGTAGTCA 59.660 47.619 0.00 0.00 0.00 3.41
6532 6947 4.002982 TCTGTACTGCCATGTTGATGAAC 58.997 43.478 0.00 0.00 0.00 3.18
6538 6953 5.255687 ACTGCCATGTTGATGAACAGATTA 58.744 37.500 3.63 0.00 45.29 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 150 8.783833 TCACAAATTCAAAAACAATTCTCCAA 57.216 26.923 0.00 0.00 0.00 3.53
263 274 9.481340 ACTTTTTCTATTTCTTTGCAATTCCTC 57.519 29.630 0.00 0.00 0.00 3.71
536 551 7.142995 TCTTTCTCTCCTTTTCCTCTTTCTT 57.857 36.000 0.00 0.00 0.00 2.52
537 552 6.755542 TCTTTCTCTCCTTTTCCTCTTTCT 57.244 37.500 0.00 0.00 0.00 2.52
538 553 7.809546 TTTCTTTCTCTCCTTTTCCTCTTTC 57.190 36.000 0.00 0.00 0.00 2.62
539 554 8.595362 TTTTTCTTTCTCTCCTTTTCCTCTTT 57.405 30.769 0.00 0.00 0.00 2.52
590 605 2.188817 TGGAGCTTTCTAGGAGGTTCC 58.811 52.381 8.92 8.92 36.58 3.62
591 606 3.983044 TTGGAGCTTTCTAGGAGGTTC 57.017 47.619 0.00 0.00 0.00 3.62
592 607 4.724279 TTTTGGAGCTTTCTAGGAGGTT 57.276 40.909 0.00 0.00 0.00 3.50
593 608 4.724279 TTTTTGGAGCTTTCTAGGAGGT 57.276 40.909 0.00 0.00 0.00 3.85
614 629 6.019398 CGATTTTAGGTTTTTGAGCCGTTTTT 60.019 34.615 0.00 0.00 0.00 1.94
615 630 5.460748 CGATTTTAGGTTTTTGAGCCGTTTT 59.539 36.000 0.00 0.00 0.00 2.43
616 631 4.979815 CGATTTTAGGTTTTTGAGCCGTTT 59.020 37.500 0.00 0.00 0.00 3.60
617 632 4.542735 CGATTTTAGGTTTTTGAGCCGTT 58.457 39.130 0.00 0.00 0.00 4.44
618 633 3.057806 CCGATTTTAGGTTTTTGAGCCGT 60.058 43.478 0.00 0.00 0.00 5.68
619 634 3.057806 ACCGATTTTAGGTTTTTGAGCCG 60.058 43.478 0.00 0.00 39.29 5.52
620 635 4.234574 CACCGATTTTAGGTTTTTGAGCC 58.765 43.478 0.00 0.00 40.59 4.70
621 636 4.234574 CCACCGATTTTAGGTTTTTGAGC 58.765 43.478 0.00 0.00 40.59 4.26
622 637 5.447624 ACCACCGATTTTAGGTTTTTGAG 57.552 39.130 0.00 0.00 40.59 3.02
623 638 4.023878 CGACCACCGATTTTAGGTTTTTGA 60.024 41.667 0.00 0.00 40.59 2.69
624 639 4.223659 CGACCACCGATTTTAGGTTTTTG 58.776 43.478 0.00 0.00 40.59 2.44
625 640 3.253921 CCGACCACCGATTTTAGGTTTTT 59.746 43.478 0.00 0.00 40.59 1.94
626 641 2.815503 CCGACCACCGATTTTAGGTTTT 59.184 45.455 0.00 0.00 40.59 2.43
627 642 2.429478 CCGACCACCGATTTTAGGTTT 58.571 47.619 0.00 0.00 40.59 3.27
628 643 1.339342 CCCGACCACCGATTTTAGGTT 60.339 52.381 0.00 0.00 40.59 3.50
629 644 0.251073 CCCGACCACCGATTTTAGGT 59.749 55.000 0.00 0.00 43.97 3.08
630 645 1.093496 GCCCGACCACCGATTTTAGG 61.093 60.000 0.00 0.00 41.76 2.69
631 646 1.093496 GGCCCGACCACCGATTTTAG 61.093 60.000 0.00 0.00 41.76 1.85
632 647 1.078285 GGCCCGACCACCGATTTTA 60.078 57.895 0.00 0.00 41.76 1.52
633 648 2.360726 GGCCCGACCACCGATTTT 60.361 61.111 0.00 0.00 41.76 1.82
643 658 4.603946 GATGTAGGCCGGCCCGAC 62.604 72.222 41.72 36.14 39.45 4.79
645 660 3.883744 GATGATGTAGGCCGGCCCG 62.884 68.421 41.72 0.00 39.21 6.13
646 661 2.032681 GATGATGTAGGCCGGCCC 59.967 66.667 41.72 27.67 36.58 5.80
647 662 2.032681 GGATGATGTAGGCCGGCC 59.967 66.667 39.29 39.29 0.00 6.13
648 663 2.032681 GGGATGATGTAGGCCGGC 59.967 66.667 21.18 21.18 0.00 6.13
649 664 1.674057 GAGGGATGATGTAGGCCGG 59.326 63.158 0.00 0.00 0.00 6.13
650 665 1.290324 CGAGGGATGATGTAGGCCG 59.710 63.158 0.00 0.00 0.00 6.13
651 666 0.759346 AACGAGGGATGATGTAGGCC 59.241 55.000 0.00 0.00 0.00 5.19
652 667 1.541233 CCAACGAGGGATGATGTAGGC 60.541 57.143 0.00 0.00 0.00 3.93
653 668 1.541233 GCCAACGAGGGATGATGTAGG 60.541 57.143 0.00 0.00 38.09 3.18
654 669 1.869754 CGCCAACGAGGGATGATGTAG 60.870 57.143 0.00 0.00 43.93 2.74
655 670 0.104120 CGCCAACGAGGGATGATGTA 59.896 55.000 0.00 0.00 43.93 2.29
656 671 1.153369 CGCCAACGAGGGATGATGT 60.153 57.895 0.00 0.00 43.93 3.06
657 672 1.143838 TCGCCAACGAGGGATGATG 59.856 57.895 0.00 0.00 45.12 3.07
658 673 3.628989 TCGCCAACGAGGGATGAT 58.371 55.556 0.00 0.00 45.12 2.45
667 682 1.630148 CTAGAAGAGGTTCGCCAACG 58.370 55.000 0.00 0.00 40.60 4.10
668 683 1.337823 TGCTAGAAGAGGTTCGCCAAC 60.338 52.381 0.00 0.00 40.60 3.77
669 684 0.973632 TGCTAGAAGAGGTTCGCCAA 59.026 50.000 0.00 0.00 40.60 4.52
670 685 0.532573 CTGCTAGAAGAGGTTCGCCA 59.467 55.000 0.00 0.00 40.60 5.69
671 686 0.179097 CCTGCTAGAAGAGGTTCGCC 60.179 60.000 0.00 0.00 37.79 5.54
672 687 0.179097 CCCTGCTAGAAGAGGTTCGC 60.179 60.000 0.00 0.00 37.79 4.70
673 688 0.179097 GCCCTGCTAGAAGAGGTTCG 60.179 60.000 0.00 0.00 37.79 3.95
674 689 0.179097 CGCCCTGCTAGAAGAGGTTC 60.179 60.000 0.00 0.00 0.00 3.62
675 690 0.905337 ACGCCCTGCTAGAAGAGGTT 60.905 55.000 0.00 0.00 0.00 3.50
676 691 0.905337 AACGCCCTGCTAGAAGAGGT 60.905 55.000 0.00 0.00 0.00 3.85
677 692 0.460987 CAACGCCCTGCTAGAAGAGG 60.461 60.000 0.00 0.00 0.00 3.69
678 693 0.247736 ACAACGCCCTGCTAGAAGAG 59.752 55.000 0.00 0.00 0.00 2.85
679 694 0.685097 AACAACGCCCTGCTAGAAGA 59.315 50.000 0.00 0.00 0.00 2.87
680 695 1.523758 AAACAACGCCCTGCTAGAAG 58.476 50.000 0.00 0.00 0.00 2.85
681 696 1.975660 AAAACAACGCCCTGCTAGAA 58.024 45.000 0.00 0.00 0.00 2.10
682 697 1.877443 GAAAAACAACGCCCTGCTAGA 59.123 47.619 0.00 0.00 0.00 2.43
683 698 1.399727 CGAAAAACAACGCCCTGCTAG 60.400 52.381 0.00 0.00 0.00 3.42
684 699 0.589223 CGAAAAACAACGCCCTGCTA 59.411 50.000 0.00 0.00 0.00 3.49
685 700 1.358759 CGAAAAACAACGCCCTGCT 59.641 52.632 0.00 0.00 0.00 4.24
686 701 0.526739 AACGAAAAACAACGCCCTGC 60.527 50.000 0.00 0.00 0.00 4.85
687 702 1.202200 TGAACGAAAAACAACGCCCTG 60.202 47.619 0.00 0.00 0.00 4.45
688 703 1.096416 TGAACGAAAAACAACGCCCT 58.904 45.000 0.00 0.00 0.00 5.19
689 704 1.193644 GTGAACGAAAAACAACGCCC 58.806 50.000 0.00 0.00 0.00 6.13
690 705 2.182904 AGTGAACGAAAAACAACGCC 57.817 45.000 0.00 0.00 0.00 5.68
691 706 2.284232 GCAAGTGAACGAAAAACAACGC 60.284 45.455 0.00 0.00 0.00 4.84
692 707 2.911723 TGCAAGTGAACGAAAAACAACG 59.088 40.909 0.00 0.00 0.00 4.10
693 708 4.778773 GCATGCAAGTGAACGAAAAACAAC 60.779 41.667 14.21 0.00 0.00 3.32
694 709 3.305629 GCATGCAAGTGAACGAAAAACAA 59.694 39.130 14.21 0.00 0.00 2.83
695 710 2.857152 GCATGCAAGTGAACGAAAAACA 59.143 40.909 14.21 0.00 0.00 2.83
696 711 3.115554 AGCATGCAAGTGAACGAAAAAC 58.884 40.909 21.98 0.00 0.00 2.43
697 712 3.371168 GAGCATGCAAGTGAACGAAAAA 58.629 40.909 21.98 0.00 0.00 1.94
698 713 2.287547 GGAGCATGCAAGTGAACGAAAA 60.288 45.455 21.98 0.00 0.00 2.29
699 714 1.266718 GGAGCATGCAAGTGAACGAAA 59.733 47.619 21.98 0.00 0.00 3.46
700 715 0.874390 GGAGCATGCAAGTGAACGAA 59.126 50.000 21.98 0.00 0.00 3.85
701 716 0.250252 TGGAGCATGCAAGTGAACGA 60.250 50.000 21.98 0.00 28.48 3.85
702 717 0.167470 CTGGAGCATGCAAGTGAACG 59.833 55.000 21.98 0.00 34.45 3.95
703 718 1.198637 GACTGGAGCATGCAAGTGAAC 59.801 52.381 21.98 5.22 34.45 3.18
704 719 1.072806 AGACTGGAGCATGCAAGTGAA 59.927 47.619 21.98 0.00 34.45 3.18
705 720 0.689055 AGACTGGAGCATGCAAGTGA 59.311 50.000 21.98 0.00 34.45 3.41
706 721 1.199327 CAAGACTGGAGCATGCAAGTG 59.801 52.381 21.98 9.70 34.45 3.16
707 722 1.531423 CAAGACTGGAGCATGCAAGT 58.469 50.000 21.98 19.34 34.45 3.16
708 723 0.809385 CCAAGACTGGAGCATGCAAG 59.191 55.000 21.98 16.19 46.92 4.01
709 724 0.111061 ACCAAGACTGGAGCATGCAA 59.889 50.000 21.98 3.87 46.92 4.08
710 725 0.607217 CACCAAGACTGGAGCATGCA 60.607 55.000 21.98 0.00 46.92 3.96
711 726 1.310933 CCACCAAGACTGGAGCATGC 61.311 60.000 10.51 10.51 46.92 4.06
712 727 0.037303 ACCACCAAGACTGGAGCATG 59.963 55.000 0.00 0.00 46.92 4.06
713 728 0.773644 AACCACCAAGACTGGAGCAT 59.226 50.000 0.00 0.00 46.92 3.79
714 729 1.347707 CTAACCACCAAGACTGGAGCA 59.652 52.381 0.00 0.00 46.92 4.26
715 730 1.348036 ACTAACCACCAAGACTGGAGC 59.652 52.381 0.00 0.00 46.92 4.70
716 731 2.872038 GCACTAACCACCAAGACTGGAG 60.872 54.545 0.00 0.00 46.92 3.86
717 732 1.071699 GCACTAACCACCAAGACTGGA 59.928 52.381 0.00 0.00 46.92 3.86
719 734 1.148310 CGCACTAACCACCAAGACTG 58.852 55.000 0.00 0.00 0.00 3.51
720 735 0.034896 CCGCACTAACCACCAAGACT 59.965 55.000 0.00 0.00 0.00 3.24
721 736 1.574702 GCCGCACTAACCACCAAGAC 61.575 60.000 0.00 0.00 0.00 3.01
722 737 1.302192 GCCGCACTAACCACCAAGA 60.302 57.895 0.00 0.00 0.00 3.02
723 738 2.677003 CGCCGCACTAACCACCAAG 61.677 63.158 0.00 0.00 0.00 3.61
724 739 2.666862 CGCCGCACTAACCACCAA 60.667 61.111 0.00 0.00 0.00 3.67
725 740 3.931247 ACGCCGCACTAACCACCA 61.931 61.111 0.00 0.00 0.00 4.17
726 741 2.768503 TACACGCCGCACTAACCACC 62.769 60.000 0.00 0.00 0.00 4.61
727 742 1.373246 TACACGCCGCACTAACCAC 60.373 57.895 0.00 0.00 0.00 4.16
728 743 1.373246 GTACACGCCGCACTAACCA 60.373 57.895 0.00 0.00 0.00 3.67
729 744 1.349259 CTGTACACGCCGCACTAACC 61.349 60.000 0.00 0.00 0.00 2.85
730 745 1.349259 CCTGTACACGCCGCACTAAC 61.349 60.000 0.00 0.00 0.00 2.34
731 746 1.080366 CCTGTACACGCCGCACTAA 60.080 57.895 0.00 0.00 0.00 2.24
732 747 2.569657 CCTGTACACGCCGCACTA 59.430 61.111 0.00 0.00 0.00 2.74
735 750 3.892740 ATTGCCTGTACACGCCGCA 62.893 57.895 13.31 6.29 0.00 5.69
736 751 3.124921 ATTGCCTGTACACGCCGC 61.125 61.111 13.31 3.91 0.00 6.53
737 752 2.784596 CATTGCCTGTACACGCCG 59.215 61.111 13.31 0.21 0.00 6.46
738 753 2.257286 CTGCATTGCCTGTACACGCC 62.257 60.000 13.31 0.24 0.00 5.68
739 754 1.135315 CTGCATTGCCTGTACACGC 59.865 57.895 9.60 9.60 0.00 5.34
740 755 0.955428 ACCTGCATTGCCTGTACACG 60.955 55.000 6.12 0.00 0.00 4.49
741 756 1.247567 AACCTGCATTGCCTGTACAC 58.752 50.000 6.12 0.00 0.00 2.90
742 757 2.869101 TAACCTGCATTGCCTGTACA 57.131 45.000 6.12 0.00 0.00 2.90
743 758 3.181487 CCAATAACCTGCATTGCCTGTAC 60.181 47.826 6.12 0.00 33.00 2.90
744 759 3.023119 CCAATAACCTGCATTGCCTGTA 58.977 45.455 6.12 0.00 33.00 2.74
745 760 1.826720 CCAATAACCTGCATTGCCTGT 59.173 47.619 6.12 0.00 33.00 4.00
746 761 1.826720 ACCAATAACCTGCATTGCCTG 59.173 47.619 6.12 0.00 33.00 4.85
747 762 2.236489 ACCAATAACCTGCATTGCCT 57.764 45.000 6.12 0.00 33.00 4.75
748 763 2.735126 CGAACCAATAACCTGCATTGCC 60.735 50.000 6.12 0.00 33.00 4.52
749 764 2.163412 TCGAACCAATAACCTGCATTGC 59.837 45.455 0.46 0.46 33.00 3.56
750 765 4.637483 ATCGAACCAATAACCTGCATTG 57.363 40.909 0.00 0.00 33.93 2.82
751 766 5.189928 TGTATCGAACCAATAACCTGCATT 58.810 37.500 0.00 0.00 0.00 3.56
752 767 4.776349 TGTATCGAACCAATAACCTGCAT 58.224 39.130 0.00 0.00 0.00 3.96
753 768 4.209307 TGTATCGAACCAATAACCTGCA 57.791 40.909 0.00 0.00 0.00 4.41
754 769 4.024048 CCATGTATCGAACCAATAACCTGC 60.024 45.833 0.00 0.00 0.00 4.85
755 770 5.364778 TCCATGTATCGAACCAATAACCTG 58.635 41.667 0.00 0.00 0.00 4.00
756 771 5.611374 CTCCATGTATCGAACCAATAACCT 58.389 41.667 0.00 0.00 0.00 3.50
757 772 4.213482 GCTCCATGTATCGAACCAATAACC 59.787 45.833 0.00 0.00 0.00 2.85
758 773 5.057149 AGCTCCATGTATCGAACCAATAAC 58.943 41.667 0.00 0.00 0.00 1.89
759 774 5.290493 AGCTCCATGTATCGAACCAATAA 57.710 39.130 0.00 0.00 0.00 1.40
760 775 4.955811 AGCTCCATGTATCGAACCAATA 57.044 40.909 0.00 0.00 0.00 1.90
761 776 3.845781 AGCTCCATGTATCGAACCAAT 57.154 42.857 0.00 0.00 0.00 3.16
762 777 3.270027 CAAGCTCCATGTATCGAACCAA 58.730 45.455 0.00 0.00 0.00 3.67
763 778 2.905075 CAAGCTCCATGTATCGAACCA 58.095 47.619 0.00 0.00 0.00 3.67
764 779 1.599542 GCAAGCTCCATGTATCGAACC 59.400 52.381 0.00 0.00 0.00 3.62
765 780 2.286294 CAGCAAGCTCCATGTATCGAAC 59.714 50.000 0.00 0.00 0.00 3.95
766 781 2.093500 ACAGCAAGCTCCATGTATCGAA 60.093 45.455 0.00 0.00 0.00 3.71
767 782 1.482182 ACAGCAAGCTCCATGTATCGA 59.518 47.619 0.00 0.00 0.00 3.59
768 783 1.945387 ACAGCAAGCTCCATGTATCG 58.055 50.000 0.00 0.00 0.00 2.92
769 784 4.708726 AAAACAGCAAGCTCCATGTATC 57.291 40.909 0.00 0.00 0.00 2.24
770 785 4.813027 CAAAAACAGCAAGCTCCATGTAT 58.187 39.130 0.00 0.00 0.00 2.29
771 786 3.552684 GCAAAAACAGCAAGCTCCATGTA 60.553 43.478 0.00 0.00 0.00 2.29
772 787 2.804212 GCAAAAACAGCAAGCTCCATGT 60.804 45.455 0.00 0.00 0.00 3.21
773 788 1.796459 GCAAAAACAGCAAGCTCCATG 59.204 47.619 0.00 0.00 0.00 3.66
774 789 1.603678 CGCAAAAACAGCAAGCTCCAT 60.604 47.619 0.00 0.00 0.00 3.41
775 790 0.248990 CGCAAAAACAGCAAGCTCCA 60.249 50.000 0.00 0.00 0.00 3.86
776 791 0.030638 TCGCAAAAACAGCAAGCTCC 59.969 50.000 0.00 0.00 0.00 4.70
777 792 2.056094 ATCGCAAAAACAGCAAGCTC 57.944 45.000 0.00 0.00 0.00 4.09
778 793 2.035066 AGAATCGCAAAAACAGCAAGCT 59.965 40.909 0.00 0.00 0.00 3.74
779 794 2.397549 AGAATCGCAAAAACAGCAAGC 58.602 42.857 0.00 0.00 0.00 4.01
780 795 5.393902 AAAAGAATCGCAAAAACAGCAAG 57.606 34.783 0.00 0.00 0.00 4.01
781 796 6.922957 AGATAAAAGAATCGCAAAAACAGCAA 59.077 30.769 0.00 0.00 0.00 3.91
782 797 6.446318 AGATAAAAGAATCGCAAAAACAGCA 58.554 32.000 0.00 0.00 0.00 4.41
783 798 6.237045 CGAGATAAAAGAATCGCAAAAACAGC 60.237 38.462 0.00 0.00 0.00 4.40
784 799 7.185499 CGAGATAAAAGAATCGCAAAAACAG 57.815 36.000 0.00 0.00 0.00 3.16
793 808 3.777845 GCTTCGCGAGATAAAAGAATCG 58.222 45.455 9.59 0.00 41.60 3.34
830 845 2.011741 TATACGCTCACACTGGGCCG 62.012 60.000 0.00 0.00 41.93 6.13
831 846 0.393077 ATATACGCTCACACTGGGCC 59.607 55.000 0.00 0.00 41.93 5.80
832 847 3.594603 ATATATACGCTCACACTGGGC 57.405 47.619 0.00 0.00 41.40 5.36
833 848 5.399858 GTGTATATATACGCTCACACTGGG 58.600 45.833 23.35 0.00 39.87 4.45
834 849 5.086727 CGTGTATATATACGCTCACACTGG 58.913 45.833 26.10 10.55 40.61 4.00
835 850 5.686834 ACGTGTATATATACGCTCACACTG 58.313 41.667 26.05 15.28 43.28 3.66
836 851 5.936686 ACGTGTATATATACGCTCACACT 57.063 39.130 26.05 7.40 43.28 3.55
837 852 6.593072 TGTACGTGTATATATACGCTCACAC 58.407 40.000 26.05 19.25 43.28 3.82
838 853 6.619232 GCTGTACGTGTATATATACGCTCACA 60.619 42.308 26.05 24.90 43.28 3.58
839 854 5.731723 GCTGTACGTGTATATATACGCTCAC 59.268 44.000 26.05 22.72 43.28 3.51
840 855 5.640783 AGCTGTACGTGTATATATACGCTCA 59.359 40.000 26.05 22.42 43.28 4.26
841 856 6.104439 AGCTGTACGTGTATATATACGCTC 57.896 41.667 26.05 19.90 43.28 5.03
842 857 7.601073 TTAGCTGTACGTGTATATATACGCT 57.399 36.000 26.05 21.59 43.28 5.07
843 858 9.362911 GTATTAGCTGTACGTGTATATATACGC 57.637 37.037 26.05 21.55 43.28 4.42
844 859 9.855361 GGTATTAGCTGTACGTGTATATATACG 57.145 37.037 24.95 24.95 44.69 3.06
869 884 3.031013 CCCATTTTTACTGGGCCTTAGG 58.969 50.000 4.53 0.00 46.62 2.69
909 929 4.141251 ACGGACTAATGGGCCTCATAAAAT 60.141 41.667 4.53 0.00 42.26 1.82
1072 1092 4.212913 GAGCGCGGCATGGAGAGA 62.213 66.667 8.83 0.00 0.00 3.10
1332 1367 1.141019 GCATCGGGCGTAGAAGACA 59.859 57.895 0.00 0.00 0.00 3.41
1653 1688 4.451150 GCGTCATCCACCTCGCCA 62.451 66.667 0.00 0.00 42.33 5.69
1760 1795 5.181009 TCTGATAGAACAATTCCACAGCAG 58.819 41.667 0.00 0.00 0.00 4.24
1814 1849 1.618837 ACAGAAGGCTAAGAACGCTCA 59.381 47.619 0.00 0.00 0.00 4.26
1902 1937 5.068460 CCCCAAAATTACATCCATCGCTAAA 59.932 40.000 0.00 0.00 0.00 1.85
1905 1940 2.958355 CCCCAAAATTACATCCATCGCT 59.042 45.455 0.00 0.00 0.00 4.93
1917 1952 4.355549 TGATGATTGAGCTCCCCAAAATT 58.644 39.130 12.15 0.00 0.00 1.82
1960 1995 2.729479 CCTCTGCAGCCTCGACCAT 61.729 63.158 9.47 0.00 0.00 3.55
1974 2009 1.302033 CTGCTCAAACACGGCCTCT 60.302 57.895 0.00 0.00 0.00 3.69
2055 2090 1.880027 GTGATCAAAGCCTTGTCGGTT 59.120 47.619 0.00 0.00 33.94 4.44
2203 2238 2.354704 CCGCTTGGTCTGATTCAAGGTA 60.355 50.000 18.54 0.00 40.31 3.08
2247 2282 6.630444 TCGGTCCTTTGAGTACTCATATAC 57.370 41.667 25.68 19.12 39.64 1.47
2258 2293 1.197721 GTGCATGTTCGGTCCTTTGAG 59.802 52.381 0.00 0.00 0.00 3.02
2260 2295 0.110238 CGTGCATGTTCGGTCCTTTG 60.110 55.000 0.00 0.00 0.00 2.77
2268 2303 3.425713 AGCCTGCGTGCATGTTCG 61.426 61.111 7.93 0.00 0.00 3.95
2294 2329 2.014857 CCATGTCTCTGCAACTCATGG 58.985 52.381 18.52 18.52 45.72 3.66
2317 2352 4.337985 CAGAAATCATCACTCTGCACAC 57.662 45.455 0.00 0.00 30.91 3.82
2351 2386 1.767681 GAGCCTGAGAACTCATCCCAT 59.232 52.381 4.96 0.00 39.13 4.00
2398 2433 1.134007 TGCACTTGGAGATATGCCCTG 60.134 52.381 0.00 0.00 37.26 4.45
2468 2503 2.672098 TGAAGATCTCTAGGGCCTCAC 58.328 52.381 10.74 0.00 0.00 3.51
2615 2650 3.733443 AAATTGTTGGACTTGGTGCTC 57.267 42.857 0.00 0.00 0.00 4.26
2668 2703 3.433173 GCCTTTCCATATTGTACCGAGGT 60.433 47.826 0.00 0.00 0.00 3.85
2673 2708 4.099266 TGCATTGCCTTTCCATATTGTACC 59.901 41.667 6.12 0.00 0.00 3.34
2857 2892 5.815222 AGTTGATATGTGCAAACGCTATGTA 59.185 36.000 0.00 0.00 0.00 2.29
2858 2893 4.635765 AGTTGATATGTGCAAACGCTATGT 59.364 37.500 0.00 0.00 0.00 2.29
2859 2894 5.160699 AGTTGATATGTGCAAACGCTATG 57.839 39.130 0.00 0.00 0.00 2.23
2860 2895 5.572211 CAAGTTGATATGTGCAAACGCTAT 58.428 37.500 0.00 0.00 0.00 2.97
2861 2896 4.671508 GCAAGTTGATATGTGCAAACGCTA 60.672 41.667 7.16 0.00 36.97 4.26
3056 3094 4.149598 TGTGACTTGTGAGTAGGCTCTAA 58.850 43.478 0.00 0.00 42.13 2.10
3057 3095 3.763057 TGTGACTTGTGAGTAGGCTCTA 58.237 45.455 0.00 0.00 42.13 2.43
3058 3096 2.598565 TGTGACTTGTGAGTAGGCTCT 58.401 47.619 0.00 0.00 42.13 4.09
3059 3097 3.060602 GTTGTGACTTGTGAGTAGGCTC 58.939 50.000 0.00 0.00 41.97 4.70
3060 3098 2.700897 AGTTGTGACTTGTGAGTAGGCT 59.299 45.455 0.00 0.00 35.88 4.58
3061 3099 3.060602 GAGTTGTGACTTGTGAGTAGGC 58.939 50.000 0.00 0.00 35.88 3.93
3062 3100 3.243434 ACGAGTTGTGACTTGTGAGTAGG 60.243 47.826 0.00 0.00 46.49 3.18
3063 3101 3.966154 ACGAGTTGTGACTTGTGAGTAG 58.034 45.455 0.00 0.00 46.49 2.57
3065 3103 2.961526 ACGAGTTGTGACTTGTGAGT 57.038 45.000 0.00 0.00 46.49 3.41
3070 3108 1.502231 CCTGGACGAGTTGTGACTTG 58.498 55.000 0.00 0.00 42.13 3.16
3071 3109 0.393077 CCCTGGACGAGTTGTGACTT 59.607 55.000 0.00 0.00 35.88 3.01
3072 3110 0.469331 TCCCTGGACGAGTTGTGACT 60.469 55.000 0.00 0.00 39.32 3.41
3073 3111 0.038159 CTCCCTGGACGAGTTGTGAC 60.038 60.000 0.00 0.00 0.00 3.67
3074 3112 0.178973 TCTCCCTGGACGAGTTGTGA 60.179 55.000 0.00 0.00 0.00 3.58
3075 3113 0.679505 TTCTCCCTGGACGAGTTGTG 59.320 55.000 0.00 0.00 0.00 3.33
3076 3114 1.420430 TTTCTCCCTGGACGAGTTGT 58.580 50.000 0.00 0.00 0.00 3.32
3077 3115 2.543777 TTTTCTCCCTGGACGAGTTG 57.456 50.000 0.00 0.00 0.00 3.16
3153 3191 1.801913 CGAAGAAGACGACTGCCGG 60.802 63.158 0.00 0.00 43.93 6.13
3154 3192 2.437343 GCGAAGAAGACGACTGCCG 61.437 63.158 0.00 0.00 45.44 5.69
3155 3193 2.437343 CGCGAAGAAGACGACTGCC 61.437 63.158 0.00 0.00 0.00 4.85
3156 3194 3.060663 GCGCGAAGAAGACGACTGC 62.061 63.158 12.10 0.00 0.00 4.40
3157 3195 2.437343 GGCGCGAAGAAGACGACTG 61.437 63.158 12.10 0.00 0.00 3.51
3158 3196 2.126424 GGCGCGAAGAAGACGACT 60.126 61.111 12.10 0.00 0.00 4.18
3159 3197 2.126424 AGGCGCGAAGAAGACGAC 60.126 61.111 12.10 0.00 34.19 4.34
3160 3198 2.178521 GAGGCGCGAAGAAGACGA 59.821 61.111 12.10 0.00 0.00 4.20
3161 3199 2.881352 GGAGGCGCGAAGAAGACG 60.881 66.667 12.10 0.00 0.00 4.18
3162 3200 2.509561 GGGAGGCGCGAAGAAGAC 60.510 66.667 12.10 0.00 0.00 3.01
3163 3201 2.680352 AGGGAGGCGCGAAGAAGA 60.680 61.111 12.10 0.00 0.00 2.87
3164 3202 2.202810 GAGGGAGGCGCGAAGAAG 60.203 66.667 12.10 0.00 0.00 2.85
3165 3203 2.680352 AGAGGGAGGCGCGAAGAA 60.680 61.111 12.10 0.00 0.00 2.52
3166 3204 3.141488 GAGAGGGAGGCGCGAAGA 61.141 66.667 12.10 0.00 0.00 2.87
3167 3205 4.560856 CGAGAGGGAGGCGCGAAG 62.561 72.222 12.10 0.00 0.00 3.79
3179 3217 4.544689 CTCTGACGGCGGCGAGAG 62.545 72.222 38.93 32.23 0.00 3.20
3234 3272 4.516195 GAGAAGACGAGGCCCCGC 62.516 72.222 6.56 0.00 0.00 6.13
3235 3273 3.839432 GGAGAAGACGAGGCCCCG 61.839 72.222 4.56 4.56 0.00 5.73
3236 3274 2.683933 TGGAGAAGACGAGGCCCC 60.684 66.667 0.00 0.00 0.00 5.80
3237 3275 2.726351 CCTGGAGAAGACGAGGCCC 61.726 68.421 0.00 0.00 0.00 5.80
3238 3276 1.950973 GACCTGGAGAAGACGAGGCC 61.951 65.000 0.00 0.00 38.94 5.19
3239 3277 1.513622 GACCTGGAGAAGACGAGGC 59.486 63.158 0.00 0.00 38.94 4.70
3240 3278 1.803943 CGACCTGGAGAAGACGAGG 59.196 63.158 0.00 0.00 40.70 4.63
3241 3279 1.137825 GCGACCTGGAGAAGACGAG 59.862 63.158 0.00 0.00 0.00 4.18
3242 3280 2.687805 CGCGACCTGGAGAAGACGA 61.688 63.158 0.00 0.00 0.00 4.20
3243 3281 2.202492 CGCGACCTGGAGAAGACG 60.202 66.667 0.00 0.00 0.00 4.18
3244 3282 2.182030 CCGCGACCTGGAGAAGAC 59.818 66.667 8.23 0.00 0.00 3.01
3245 3283 3.068691 CCCGCGACCTGGAGAAGA 61.069 66.667 8.23 0.00 0.00 2.87
3246 3284 4.821589 GCCCGCGACCTGGAGAAG 62.822 72.222 8.23 0.00 0.00 2.85
3263 3301 4.477975 GAGCCCGACACGAGGACG 62.478 72.222 0.00 0.00 45.75 4.79
3264 3302 4.477975 CGAGCCCGACACGAGGAC 62.478 72.222 0.00 0.00 38.22 3.85
3266 3304 4.778415 CACGAGCCCGACACGAGG 62.778 72.222 0.00 0.00 39.50 4.63
3372 3410 4.838152 CCACACCAGATCCGGGCG 62.838 72.222 0.00 0.00 0.00 6.13
3373 3411 3.717294 ACCACACCAGATCCGGGC 61.717 66.667 0.00 0.00 0.00 6.13
3374 3412 2.268920 CACCACACCAGATCCGGG 59.731 66.667 0.00 0.00 0.00 5.73
3375 3413 2.436646 GCACCACACCAGATCCGG 60.437 66.667 0.00 0.00 0.00 5.14
3376 3414 1.742880 CAGCACCACACCAGATCCG 60.743 63.158 0.00 0.00 0.00 4.18
3377 3415 0.392193 CTCAGCACCACACCAGATCC 60.392 60.000 0.00 0.00 0.00 3.36
3378 3416 0.322975 ACTCAGCACCACACCAGATC 59.677 55.000 0.00 0.00 0.00 2.75
3379 3417 0.035881 CACTCAGCACCACACCAGAT 59.964 55.000 0.00 0.00 0.00 2.90
3380 3418 1.447217 CACTCAGCACCACACCAGA 59.553 57.895 0.00 0.00 0.00 3.86
3381 3419 2.256591 GCACTCAGCACCACACCAG 61.257 63.158 0.00 0.00 44.79 4.00
3382 3420 2.203195 GCACTCAGCACCACACCA 60.203 61.111 0.00 0.00 44.79 4.17
3383 3421 3.349006 CGCACTCAGCACCACACC 61.349 66.667 0.00 0.00 46.13 4.16
3384 3422 4.017877 GCGCACTCAGCACCACAC 62.018 66.667 0.30 0.00 46.13 3.82
3429 3467 3.570638 CAGATCCGCAAGCTGCCG 61.571 66.667 0.00 0.00 41.12 5.69
3430 3468 3.207669 CCAGATCCGCAAGCTGCC 61.208 66.667 0.00 0.00 41.12 4.85
3431 3469 3.885521 GCCAGATCCGCAAGCTGC 61.886 66.667 0.00 0.00 40.69 5.25
3432 3470 2.437180 TGCCAGATCCGCAAGCTG 60.437 61.111 2.67 0.00 32.05 4.24
3433 3471 2.124819 CTGCCAGATCCGCAAGCT 60.125 61.111 6.54 0.00 35.40 3.74
3434 3472 3.207669 CCTGCCAGATCCGCAAGC 61.208 66.667 6.54 0.00 35.40 4.01
3435 3473 2.515523 CCCTGCCAGATCCGCAAG 60.516 66.667 6.54 1.03 35.40 4.01
3436 3474 4.113815 CCCCTGCCAGATCCGCAA 62.114 66.667 6.54 0.00 35.40 4.85
3480 3518 2.738521 GCACATCGAGCCACACGT 60.739 61.111 0.00 0.00 0.00 4.49
3481 3519 3.842126 CGCACATCGAGCCACACG 61.842 66.667 0.00 0.00 41.67 4.49
3501 3539 3.320879 ATCAGCCACTGCACCCTCG 62.321 63.158 0.00 0.00 41.13 4.63
3523 3561 4.154347 CTCTGCTCCGTGCCTCCC 62.154 72.222 0.00 0.00 42.00 4.30
3539 3577 3.889692 CCACCACACCTGCACCCT 61.890 66.667 0.00 0.00 0.00 4.34
3540 3578 3.210012 ATCCACCACACCTGCACCC 62.210 63.158 0.00 0.00 0.00 4.61
3547 3585 1.078143 GCCTCAGATCCACCACACC 60.078 63.158 0.00 0.00 0.00 4.16
3557 3595 1.045911 GGAGACCGGAAGCCTCAGAT 61.046 60.000 9.46 0.00 33.02 2.90
3584 3622 1.659954 GACGCGCCAATGCAAACAA 60.660 52.632 5.73 0.00 37.32 2.83
3585 3623 2.050533 GACGCGCCAATGCAAACA 60.051 55.556 5.73 0.00 37.32 2.83
3588 3626 3.736100 CCAGACGCGCCAATGCAA 61.736 61.111 5.73 0.00 37.32 4.08
3592 3636 1.377202 ATGAACCAGACGCGCCAAT 60.377 52.632 5.73 0.00 0.00 3.16
3633 3685 4.699522 AAGCACCGCCCGAGAACC 62.700 66.667 0.00 0.00 0.00 3.62
3656 3714 4.148825 CTCTTCCACCTCCCCGCG 62.149 72.222 0.00 0.00 0.00 6.46
3662 3720 1.208293 GACATCCACCTCTTCCACCTC 59.792 57.143 0.00 0.00 0.00 3.85
3671 3729 1.153823 CCACGTCGACATCCACCTC 60.154 63.158 17.16 0.00 0.00 3.85
3722 3782 0.613260 CCTCCACACCTTCGAATCCA 59.387 55.000 0.00 0.00 0.00 3.41
3795 3857 2.093658 GGAACGACACTATGACCATGGT 60.094 50.000 19.89 19.89 32.44 3.55
3806 3868 1.420430 TCAAGAAGGGGAACGACACT 58.580 50.000 0.00 0.00 0.00 3.55
3880 3942 4.845580 CGCCCGCTTCAGCCATCT 62.846 66.667 0.00 0.00 37.91 2.90
3886 3948 2.237751 CCGTTATCGCCCGCTTCAG 61.238 63.158 0.00 0.00 35.54 3.02
3887 3949 2.202824 CCGTTATCGCCCGCTTCA 60.203 61.111 0.00 0.00 35.54 3.02
3936 3998 2.873245 GCAACATGCTGACTCTCCAAGA 60.873 50.000 0.00 0.00 40.96 3.02
3977 4039 1.224592 GTCCATTGCCCCTGACGAT 59.775 57.895 0.00 0.00 0.00 3.73
4057 4119 2.292016 CCTCATAGAGCTACCACTCACG 59.708 54.545 0.00 0.00 39.26 4.35
4066 4128 0.563173 AGCCCCACCTCATAGAGCTA 59.437 55.000 0.00 0.00 0.00 3.32
4137 4200 4.630785 CGCATCGACCGAGCCGAT 62.631 66.667 1.37 0.00 46.32 4.18
4199 4264 1.593209 ACGAACGTCGCACCACATT 60.593 52.632 7.21 0.00 45.12 2.71
4273 4338 1.078918 CTCCATCCGAGCAGCAACA 60.079 57.895 0.00 0.00 0.00 3.33
4285 4350 0.941463 CGACATAGCACCGCTCCATC 60.941 60.000 0.00 0.00 40.44 3.51
4286 4351 1.068083 CGACATAGCACCGCTCCAT 59.932 57.895 0.00 0.00 40.44 3.41
4387 4452 9.121658 CATAGAAGTCTAGTCACCACAGTAATA 57.878 37.037 0.00 0.00 0.00 0.98
4390 4455 5.886474 CCATAGAAGTCTAGTCACCACAGTA 59.114 44.000 0.00 0.00 0.00 2.74
4398 4463 4.014406 TCGTTGCCATAGAAGTCTAGTCA 58.986 43.478 0.00 0.00 0.00 3.41
4402 4467 5.509670 CCATCATCGTTGCCATAGAAGTCTA 60.510 44.000 0.00 0.00 0.00 2.59
4411 4476 0.752743 CCCACCATCATCGTTGCCAT 60.753 55.000 0.00 0.00 0.00 4.40
4480 4545 0.669318 GAGGCGAATTCGTGGACACA 60.669 55.000 27.24 0.00 42.22 3.72
4535 4602 0.105142 ATCGTACACCATAGGGCCCT 60.105 55.000 31.35 31.35 37.90 5.19
4543 4611 2.223829 GCAGCTAGTCATCGTACACCAT 60.224 50.000 0.00 0.00 0.00 3.55
4622 4691 2.932622 GCTCCGACTCAAATGAAGAGCA 60.933 50.000 14.48 0.00 43.62 4.26
4630 4699 0.320771 AACGCAGCTCCGACTCAAAT 60.321 50.000 2.80 0.00 0.00 2.32
4632 4701 1.664649 CAACGCAGCTCCGACTCAA 60.665 57.895 2.80 0.00 0.00 3.02
4653 4722 2.190325 GACAAGTCGACCTATGACCG 57.810 55.000 13.01 0.00 37.04 4.79
4699 4769 9.055689 AGCCCATTCTCATAGACTGAAATATAT 57.944 33.333 0.00 0.00 32.14 0.86
4701 4771 7.327064 AGCCCATTCTCATAGACTGAAATAT 57.673 36.000 0.00 0.00 32.14 1.28
4702 4772 6.753913 AGCCCATTCTCATAGACTGAAATA 57.246 37.500 0.00 0.00 32.14 1.40
4703 4773 5.643421 AGCCCATTCTCATAGACTGAAAT 57.357 39.130 0.00 0.00 32.14 2.17
4933 5004 5.701290 ACAGTTTGCAGTTATCCTTCAGTAC 59.299 40.000 0.00 0.00 0.00 2.73
5079 5388 8.393366 CAGTCAGTGATCGATTGTTGATAAATT 58.607 33.333 0.00 0.00 0.00 1.82
5087 5396 6.893958 GATTACAGTCAGTGATCGATTGTT 57.106 37.500 0.00 0.00 35.30 2.83
5102 5411 0.178068 AAGCATCGGCCGATTACAGT 59.822 50.000 37.36 20.21 42.56 3.55
5261 5570 2.038269 GCCTTTCCGCCATTGTCGA 61.038 57.895 0.00 0.00 0.00 4.20
5289 5598 0.462047 CCTTGCTAAAGCCGGATCGT 60.462 55.000 5.05 0.00 41.18 3.73
5338 5648 3.274095 TCCATCATTCGTTGTGCCATA 57.726 42.857 0.00 0.00 0.00 2.74
5363 5673 2.436646 GACACATGGTGGCTCCCG 60.437 66.667 2.66 0.00 38.75 5.14
5466 5797 0.957395 CCGGCAGCAGAACAGAACAT 60.957 55.000 0.00 0.00 0.00 2.71
5564 5932 1.596477 GATGCGGGGAGACTCATGC 60.596 63.158 4.53 5.40 0.00 4.06
5569 5937 0.553819 ACTCTAGATGCGGGGAGACT 59.446 55.000 0.00 0.00 0.00 3.24
5570 5938 2.156098 CTACTCTAGATGCGGGGAGAC 58.844 57.143 0.00 0.00 0.00 3.36
5602 5972 8.282124 TCGAAATATAAAGCTCACAATCTACG 57.718 34.615 0.00 0.00 0.00 3.51
5603 5973 8.217778 GCTCGAAATATAAAGCTCACAATCTAC 58.782 37.037 0.00 0.00 0.00 2.59
5609 5979 5.023533 AGGCTCGAAATATAAAGCTCACA 57.976 39.130 0.00 0.00 35.12 3.58
5618 5988 9.698309 CAATCTCTTAAAGAGGCTCGAAATATA 57.302 33.333 9.22 0.00 42.54 0.86
5622 5992 5.794894 ACAATCTCTTAAAGAGGCTCGAAA 58.205 37.500 9.22 4.09 42.54 3.46
5635 6006 7.316393 TCTTGAGGAGGAAAACAATCTCTTA 57.684 36.000 0.00 0.00 0.00 2.10
5637 6008 5.832539 TCTTGAGGAGGAAAACAATCTCT 57.167 39.130 0.00 0.00 0.00 3.10
5638 6009 6.884280 TTTCTTGAGGAGGAAAACAATCTC 57.116 37.500 0.00 0.00 0.00 2.75
5639 6010 7.660030 TTTTTCTTGAGGAGGAAAACAATCT 57.340 32.000 0.00 0.00 37.81 2.40
5640 6011 9.411801 GTATTTTTCTTGAGGAGGAAAACAATC 57.588 33.333 0.00 0.00 43.81 2.67
5641 6012 9.147732 AGTATTTTTCTTGAGGAGGAAAACAAT 57.852 29.630 0.00 0.00 43.81 2.71
5643 6014 8.533569 AAGTATTTTTCTTGAGGAGGAAAACA 57.466 30.769 0.00 0.00 43.81 2.83
5644 6015 8.082852 GGAAGTATTTTTCTTGAGGAGGAAAAC 58.917 37.037 0.00 0.00 43.81 2.43
5645 6016 8.004801 AGGAAGTATTTTTCTTGAGGAGGAAAA 58.995 33.333 0.00 0.00 44.81 2.29
5646 6017 7.526918 AGGAAGTATTTTTCTTGAGGAGGAAA 58.473 34.615 0.00 0.00 30.77 3.13
5647 6018 7.091533 AGGAAGTATTTTTCTTGAGGAGGAA 57.908 36.000 0.00 0.00 0.00 3.36
5648 6019 6.296489 GGAGGAAGTATTTTTCTTGAGGAGGA 60.296 42.308 0.00 0.00 0.00 3.71
5649 6020 5.883115 GGAGGAAGTATTTTTCTTGAGGAGG 59.117 44.000 0.00 0.00 0.00 4.30
5650 6021 6.716284 AGGAGGAAGTATTTTTCTTGAGGAG 58.284 40.000 0.00 0.00 0.00 3.69
5651 6022 6.296489 GGAGGAGGAAGTATTTTTCTTGAGGA 60.296 42.308 0.00 0.00 0.00 3.71
5652 6023 5.883115 GGAGGAGGAAGTATTTTTCTTGAGG 59.117 44.000 0.00 0.00 0.00 3.86
5653 6024 5.883115 GGGAGGAGGAAGTATTTTTCTTGAG 59.117 44.000 0.00 0.00 0.00 3.02
5654 6025 5.570844 CGGGAGGAGGAAGTATTTTTCTTGA 60.571 44.000 0.00 0.00 0.00 3.02
5655 6026 4.636206 CGGGAGGAGGAAGTATTTTTCTTG 59.364 45.833 0.00 0.00 0.00 3.02
5656 6027 4.844884 CGGGAGGAGGAAGTATTTTTCTT 58.155 43.478 0.00 0.00 0.00 2.52
5657 6028 3.370633 GCGGGAGGAGGAAGTATTTTTCT 60.371 47.826 0.00 0.00 0.00 2.52
5658 6029 2.943690 GCGGGAGGAGGAAGTATTTTTC 59.056 50.000 0.00 0.00 0.00 2.29
5659 6030 2.356844 GGCGGGAGGAGGAAGTATTTTT 60.357 50.000 0.00 0.00 0.00 1.94
5660 6031 1.212195 GGCGGGAGGAGGAAGTATTTT 59.788 52.381 0.00 0.00 0.00 1.82
5661 6032 0.837940 GGCGGGAGGAGGAAGTATTT 59.162 55.000 0.00 0.00 0.00 1.40
5662 6033 0.031010 AGGCGGGAGGAGGAAGTATT 60.031 55.000 0.00 0.00 0.00 1.89
5663 6034 0.858369 TAGGCGGGAGGAGGAAGTAT 59.142 55.000 0.00 0.00 0.00 2.12
5664 6035 0.106318 GTAGGCGGGAGGAGGAAGTA 60.106 60.000 0.00 0.00 0.00 2.24
5665 6036 1.381463 GTAGGCGGGAGGAGGAAGT 60.381 63.158 0.00 0.00 0.00 3.01
5666 6037 2.491022 CGTAGGCGGGAGGAGGAAG 61.491 68.421 0.00 0.00 0.00 3.46
6092 6463 5.488645 ACGTTGAACCTAACAAAAACGAT 57.511 34.783 12.11 0.00 42.06 3.73
6105 6476 1.477295 TCCCAACCAAAACGTTGAACC 59.523 47.619 0.00 0.00 44.88 3.62
6106 6477 2.943449 TCCCAACCAAAACGTTGAAC 57.057 45.000 0.00 0.00 44.88 3.18
6107 6478 3.786635 CAATCCCAACCAAAACGTTGAA 58.213 40.909 0.00 0.00 44.88 2.69
6108 6479 2.482142 GCAATCCCAACCAAAACGTTGA 60.482 45.455 0.00 0.00 44.88 3.18
6109 6480 1.864082 GCAATCCCAACCAAAACGTTG 59.136 47.619 0.00 0.00 42.31 4.10
6110 6481 1.537135 CGCAATCCCAACCAAAACGTT 60.537 47.619 0.00 0.00 0.00 3.99
6115 6486 2.045280 CCACGCAATCCCAACCAAA 58.955 52.632 0.00 0.00 0.00 3.28
6126 6497 2.016318 CATTATTCCTCTGCCACGCAA 58.984 47.619 0.00 0.00 38.41 4.85
6158 6546 2.547855 CGCATCATCAGGACGGGAATAA 60.548 50.000 0.00 0.00 0.00 1.40
6162 6550 1.326951 TTCGCATCATCAGGACGGGA 61.327 55.000 0.00 0.00 0.00 5.14
6192 6580 0.036010 CACACCTCCACACATCCTCC 60.036 60.000 0.00 0.00 0.00 4.30
6215 6603 0.533491 AATCCCACGAAATCCGACGA 59.467 50.000 0.00 0.00 41.76 4.20
6224 6612 0.179121 CACCGATCGAATCCCACGAA 60.179 55.000 18.66 0.00 42.80 3.85
6227 6615 1.144057 AGCACCGATCGAATCCCAC 59.856 57.895 18.66 0.00 0.00 4.61
6228 6616 1.143838 CAGCACCGATCGAATCCCA 59.856 57.895 18.66 0.00 0.00 4.37
6233 6621 1.153353 GAAAACCAGCACCGATCGAA 58.847 50.000 18.66 0.00 0.00 3.71
6273 6661 4.399978 ACACGAACGAAGACAAACAAAAG 58.600 39.130 0.14 0.00 0.00 2.27
6296 6685 3.073356 TCGGAAAGACCAAACCCATAACT 59.927 43.478 0.00 0.00 38.90 2.24
6301 6690 2.668144 AATCGGAAAGACCAAACCCA 57.332 45.000 0.00 0.00 38.90 4.51
6309 6698 8.983307 TTAAGAGAGTTCTAAATCGGAAAGAC 57.017 34.615 0.00 0.00 31.96 3.01
6316 6705 8.783999 TCGCTAATTAAGAGAGTTCTAAATCG 57.216 34.615 0.00 0.00 31.96 3.34
6323 6712 6.510317 GCAACCATCGCTAATTAAGAGAGTTC 60.510 42.308 0.00 0.00 37.45 3.01
6333 6722 3.127548 CAGAACAGCAACCATCGCTAATT 59.872 43.478 0.00 0.00 37.72 1.40
6336 6725 1.675714 CCAGAACAGCAACCATCGCTA 60.676 52.381 0.00 0.00 37.72 4.26
6351 6740 1.148273 AAAGGACAGCGCACCAGAA 59.852 52.632 11.47 0.00 0.00 3.02
6364 6753 2.629137 TGTTGTAGTAGACCGCAAAGGA 59.371 45.455 0.00 0.00 45.00 3.36
6367 6756 3.181463 ACCTTGTTGTAGTAGACCGCAAA 60.181 43.478 0.00 0.00 0.00 3.68
6370 6759 2.738013 ACCTTGTTGTAGTAGACCGC 57.262 50.000 0.00 0.00 0.00 5.68
6371 6760 3.185797 GCAAACCTTGTTGTAGTAGACCG 59.814 47.826 0.00 0.00 0.00 4.79
6372 6761 3.501062 GGCAAACCTTGTTGTAGTAGACC 59.499 47.826 0.00 0.00 0.00 3.85
6402 6817 1.770658 CTATCATTGCCCTCCCTCACA 59.229 52.381 0.00 0.00 0.00 3.58
6415 6830 0.942962 GAAGCTGCGCTGCTATCATT 59.057 50.000 36.99 23.74 43.24 2.57
6443 6858 1.546029 AGCGATGACTACAAGCACTGA 59.454 47.619 0.00 0.00 36.63 3.41
6458 6873 2.628657 GGTTCATAGACCACCTAGCGAT 59.371 50.000 0.00 0.00 39.57 4.58
6596 7017 5.477510 AGCATCTAGATCCTTATTTGCGAG 58.522 41.667 1.03 0.00 34.20 5.03
6597 7018 5.474578 AGCATCTAGATCCTTATTTGCGA 57.525 39.130 1.03 0.00 34.20 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.