AutoCloner

Multiple sequence alignment - TraesCS3A01G216500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G216500	chr3A	100.000	2669	0	0	1	2669	394647887	394650555	0.000000e+00	4929.0
1	TraesCS3A01G216500	chr3D	95.490	1818	43	19	1	1808	297676841	297678629	0.000000e+00	2867.0
2	TraesCS3A01G216500	chr3D	90.144	416	31	5	2239	2653	297679067	297679473	1.410000e-147	532.0
3	TraesCS3A01G216500	chr3D	96.000	225	7	2	2002	2224	297678859	297679083	5.430000e-97	364.0
4	TraesCS3A01G216500	chr3D	93.706	143	9	0	1825	1967	297678720	297678862	5.790000e-52	215.0
5	TraesCS3A01G216500	chr3D	100.000	36	0	0	1796	1831	297678665	297678700	1.710000e-07	67.6
6	TraesCS3A01G216500	chr3B	96.327	599	17	4	680	1275	392797602	392798198	0.000000e+00	979.0
7	TraesCS3A01G216500	chr3B	95.588	544	11	8	1272	1808	392809441	392809978	0.000000e+00	859.0
8	TraesCS3A01G216500	chr3B	94.472	398	17	3	1832	2224	392810076	392810473	2.270000e-170	608.0
9	TraesCS3A01G216500	chr3B	89.880	415	37	5	2239	2652	392810457	392810867	1.820000e-146	529.0
10	TraesCS3A01G216500	chr3B	95.876	194	8	0	1	194	392797145	392797338	5.550000e-82	315.0
11	TraesCS3A01G216500	chr3B	95.804	143	4	1	540	682	392797339	392797479	2.070000e-56	230.0
12	TraesCS3A01G216500	chr3B	100.000	36	0	0	1796	1831	392810014	392810049	1.710000e-07	67.6
13	TraesCS3A01G216500	chr2A	81.314	487	77	12	841	1317	715813324	715813806	1.500000e-102	383.0
14	TraesCS3A01G216500	chr2A	80.541	370	41	20	1360	1703	715813905	715814269	3.410000e-64	255.0
15	TraesCS3A01G216500	chr2D	78.179	637	107	23	707	1317	577602803	577602173	6.970000e-101	377.0
16	TraesCS3A01G216500	chr2D	93.678	174	11	0	2328	2501	635024829	635024656	7.330000e-66	261.0
17	TraesCS3A01G216500	chr2D	80.376	372	38	23	1360	1703	577602074	577601710	1.590000e-62	250.0
18	TraesCS3A01G216500	chr2B	81.474	475	73	12	841	1304	694990986	694991456	2.510000e-100	375.0
19	TraesCS3A01G216500	chr2B	81.303	353	32	22	1378	1703	694991588	694991933	3.410000e-64	255.0
20	TraesCS3A01G216500	chr7A	94.253	174	10	0	2328	2501	60114587	60114414	1.580000e-67	267.0
21	TraesCS3A01G216500	chrUn	93.220	177	12	0	2325	2501	402224643	402224819	7.330000e-66	261.0
22	TraesCS3A01G216500	chrUn	93.678	174	11	0	2328	2501	413328424	413328251	7.330000e-66	261.0
23	TraesCS3A01G216500	chr7D	93.220	177	12	0	2325	2501	381876283	381876459	7.330000e-66	261.0
24	TraesCS3A01G216500	chr5B	93.220	177	12	0	2325	2501	533074882	533075058	7.330000e-66	261.0
25	TraesCS3A01G216500	chr5B	93.220	177	12	0	2325	2501	567298900	567299076	7.330000e-66	261.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G216500	chr3A	394647887	394650555	2668	False	4929.00	4929	100.000000	1	2669	1	chr3A.!!$F1	2668
1	TraesCS3A01G216500	chr3D	297676841	297679473	2632	False	809.12	2867	95.068000	1	2653	5	chr3D.!!$F1	2652
2	TraesCS3A01G216500	chr3B	392809441	392810867	1426	False	515.90	859	94.985000	1272	2652	4	chr3B.!!$F2	1380
3	TraesCS3A01G216500	chr3B	392797145	392798198	1053	False	508.00	979	96.002333	1	1275	3	chr3B.!!$F1	1274
4	TraesCS3A01G216500	chr2A	715813324	715814269	945	False	319.00	383	80.927500	841	1703	2	chr2A.!!$F1	862
5	TraesCS3A01G216500	chr2D	577601710	577602803	1093	True	313.50	377	79.277500	707	1703	2	chr2D.!!$R2	996
6	TraesCS3A01G216500	chr2B	694990986	694991933	947	False	315.00	375	81.388500	841	1703	2	chr2B.!!$F1	862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
253	254	1.05504	GCACTCCAGCATCCTCCTAT	58.945	55.0	0.0	0.0	0.0	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2238	2552	1.844497	AGTCAAGTATTAGGGTGCCCC	59.156	52.381	3.17	2.16	45.9	5.8	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
70	71	1.552337	ACACATCTTGCTCCTCGTGAT	59.448	47.619	0.00	0.00	0.00	3.06
71	72	2.200067	CACATCTTGCTCCTCGTGATC	58.800	52.381	0.00	0.00	0.00	2.92
88	89	3.461982	CGTGATATCGCGGCGAGC	61.462	66.667	29.64	20.65	45.14	5.03
193	194	4.329545	GGTCTCCGGCAGCAACCA	62.330	66.667	0.00	0.00	0.00	3.67
194	195	2.281484	GTCTCCGGCAGCAACCAA	60.281	61.111	0.00	0.00	0.00	3.67
195	196	2.281484	TCTCCGGCAGCAACCAAC	60.281	61.111	0.00	0.00	0.00	3.77
196	197	3.365265	CTCCGGCAGCAACCAACC	61.365	66.667	0.00	0.00	0.00	3.77
197	198	3.850098	CTCCGGCAGCAACCAACCT	62.850	63.158	0.00	0.00	0.00	3.50
198	199	3.673484	CCGGCAGCAACCAACCTG	61.673	66.667	0.00	0.00	0.00	4.00
199	200	2.906897	CGGCAGCAACCAACCTGT	60.907	61.111	0.00	0.00	0.00	4.00
200	201	2.730094	GGCAGCAACCAACCTGTG	59.270	61.111	0.00	0.00	0.00	3.66
201	202	2.127232	GGCAGCAACCAACCTGTGT	61.127	57.895	0.00	0.00	0.00	3.72
202	203	1.066257	GCAGCAACCAACCTGTGTG	59.934	57.895	0.00	0.00	0.00	3.82
203	204	1.735360	CAGCAACCAACCTGTGTGG	59.265	57.895	0.00	0.00	42.93	4.17
253	254	1.055040	GCACTCCAGCATCCTCCTAT	58.945	55.000	0.00	0.00	0.00	2.57
267	268	2.223923	CCTCCTATTCAAGCTCGAGTGG	60.224	54.545	15.13	4.05	0.00	4.00
269	270	1.134699	CCTATTCAAGCTCGAGTGGCA	60.135	52.381	15.13	0.00	0.00	4.92
342	348	2.233431	GCAACCCAGATGCCACAATTTA	59.767	45.455	0.00	0.00	37.85	1.40
396	402	4.865365	CGGAAGAGTACCAAATTGAGAGAC	59.135	45.833	0.00	0.00	0.00	3.36
417	423	7.983484	AGAGACAACTTAAAACCGAACTTCTTA	59.017	33.333	0.00	0.00	0.00	2.10
474	480	2.086610	ACTCCAACCTTGCCATGTTT	57.913	45.000	0.00	0.00	0.00	2.83
538	544	3.708220	GAGAGCAGACGAAGGGGCG	62.708	68.421	0.00	0.00	37.29	6.13
543	549	1.660560	GCAGACGAAGGGGCGTACTA	61.661	60.000	0.00	0.00	45.72	1.82
654	660	4.521639	CCACTGTAGTACTGTACAACCTCA	59.478	45.833	19.27	9.55	32.49	3.86
720	853	1.438651	TGTTGCATGGTCGCTAGTTC	58.561	50.000	0.00	0.00	0.00	3.01
1782	2017	3.645434	TGGAATCCTGGATTTTGATGGG	58.355	45.455	22.15	0.00	31.89	4.00
1897	2206	1.246649	TGCAACTTCGTGAATGCCAT	58.753	45.000	5.90	0.00	38.00	4.40
1907	2216	4.068599	TCGTGAATGCCATTGTTAGTTCA	58.931	39.130	0.00	0.00	0.00	3.18
1959	2268	4.164221	CCAGCAAAGATTAGGGACCTCTAA	59.836	45.833	0.00	5.28	34.23	2.10
1965	2274	5.975988	AGATTAGGGACCTCTAATTTGCA	57.024	39.130	13.38	0.00	39.31	4.08
1978	2287	6.462909	CCTCTAATTTGCACTTGGGAGTTTTT	60.463	38.462	0.00	0.00	32.54	1.94
2127	2437	6.397831	TGAAAGATTATGAAACCGTGTACG	57.602	37.500	0.00	0.00	39.44	3.67
2138	2448	2.636830	ACCGTGTACGTATCAGCTACT	58.363	47.619	0.00	0.00	37.74	2.57
2179	2490	3.123804	CGGTGATCCACTAAGTGCATAC	58.876	50.000	0.00	0.00	34.40	2.39
2217	2531	2.526888	AGTGTAGTAGCAGCACCCTA	57.473	50.000	0.00	0.00	33.96	3.53
2218	2532	2.816411	AGTGTAGTAGCAGCACCCTAA	58.184	47.619	0.00	0.00	33.96	2.69
2219	2533	3.375699	AGTGTAGTAGCAGCACCCTAAT	58.624	45.455	0.00	0.00	33.96	1.73
2220	2534	4.543689	AGTGTAGTAGCAGCACCCTAATA	58.456	43.478	0.00	0.00	33.96	0.98
2221	2535	4.341520	AGTGTAGTAGCAGCACCCTAATAC	59.658	45.833	0.00	8.18	37.06	1.89
2222	2536	4.341520	GTGTAGTAGCAGCACCCTAATACT	59.658	45.833	13.29	0.00	37.29	2.12
2223	2537	4.960469	TGTAGTAGCAGCACCCTAATACTT	59.040	41.667	13.29	0.00	37.29	2.24
2224	2538	5.424252	TGTAGTAGCAGCACCCTAATACTTT	59.576	40.000	13.29	0.00	37.29	2.66
2225	2539	5.437191	AGTAGCAGCACCCTAATACTTTT	57.563	39.130	0.00	0.00	0.00	2.27
2226	2540	5.816682	AGTAGCAGCACCCTAATACTTTTT	58.183	37.500	0.00	0.00	0.00	1.94
2288	2602	8.759782	ACTAGGTGTACTATTGCATTTTACTCT	58.240	33.333	0.00	0.00	0.00	3.24
2289	2603	9.250624	CTAGGTGTACTATTGCATTTTACTCTC	57.749	37.037	0.00	0.00	0.00	3.20
2385	2700	3.433598	GCCTTAGCATACAAGGACCATGA	60.434	47.826	3.17	0.00	44.59	3.07
2392	2707	0.396435	ACAAGGACCATGACTCGCAA	59.604	50.000	3.17	0.00	0.00	4.85
2394	2709	0.687354	AAGGACCATGACTCGCAACT	59.313	50.000	0.00	0.00	0.00	3.16
2409	2724	1.942586	GCAACTGGTAGTTACGGTGGG	60.943	57.143	0.00	0.00	36.03	4.61
2445	2760	1.134220	TCAAGGTTGCTGGTTCGAAGT	60.134	47.619	0.00	0.00	0.00	3.01
2448	2763	2.490991	AGGTTGCTGGTTCGAAGTTAC	58.509	47.619	0.00	0.00	0.00	2.50
2510	2825	5.843969	AGAGGAAAGAAAGGCCCAAAATAAA	59.156	36.000	0.00	0.00	0.00	1.40
2530	2845	4.174129	GCGATTTGGAACCGCGGG	62.174	66.667	31.76	11.88	39.54	6.13
2535	2850	2.684192	ATTTGGAACCGCGGGTGTGA	62.684	55.000	31.76	8.99	35.34	3.58
2608	2923	2.105477	ACGATGGCTAATGCTGGAATCT	59.895	45.455	0.00	0.00	39.59	2.40
2609	2924	2.483106	CGATGGCTAATGCTGGAATCTG	59.517	50.000	0.00	0.00	39.59	2.90
2610	2925	3.748083	GATGGCTAATGCTGGAATCTGA	58.252	45.455	0.00	0.00	39.59	3.27
2611	2926	2.923121	TGGCTAATGCTGGAATCTGAC	58.077	47.619	0.00	0.00	39.59	3.51
2612	2927	2.225467	GGCTAATGCTGGAATCTGACC	58.775	52.381	0.00	0.00	39.59	4.02
2632	2947	0.185901	ATGTGGGAAGTTGTGGCAGT	59.814	50.000	0.00	0.00	0.00	4.40
2640	2955	0.751643	AGTTGTGGCAGTTGTGACCC	60.752	55.000	0.00	0.00	0.00	4.46
2653	2968	0.253327	GTGACCCTGGAAGATGGGAC	59.747	60.000	4.93	0.00	46.15	4.46
2654	2969	0.914417	TGACCCTGGAAGATGGGACC	60.914	60.000	4.93	0.00	46.15	4.46
2655	2970	0.914417	GACCCTGGAAGATGGGACCA	60.914	60.000	4.93	0.00	46.15	4.02
2656	2971	0.916358	ACCCTGGAAGATGGGACCAG	60.916	60.000	4.93	0.00	46.15	4.00
2658	2973	3.012153	CTGGAAGATGGGACCAGGA	57.988	57.895	0.00	0.00	44.96	3.86
2659	2974	1.516110	CTGGAAGATGGGACCAGGAT	58.484	55.000	0.00	0.00	44.96	3.24
2660	2975	1.142465	CTGGAAGATGGGACCAGGATG	59.858	57.143	0.00	0.00	44.96	3.51
2661	2976	0.179006	GGAAGATGGGACCAGGATGC	60.179	60.000	0.00	0.00	31.97	3.91
2662	2977	0.548031	GAAGATGGGACCAGGATGCA	59.452	55.000	0.00	0.00	31.97	3.96
2663	2978	0.549950	AAGATGGGACCAGGATGCAG	59.450	55.000	0.00	0.00	31.97	4.41
2664	2979	1.150081	GATGGGACCAGGATGCAGG	59.850	63.158	0.00	0.00	31.97	4.85
2665	2980	2.349100	GATGGGACCAGGATGCAGGG	62.349	65.000	0.00	0.00	31.97	4.45
2666	2981	3.813724	GGGACCAGGATGCAGGGG	61.814	72.222	0.00	0.00	31.97	4.79
2667	2982	3.813724	GGACCAGGATGCAGGGGG	61.814	72.222	0.00	0.00	31.97	5.40
2668	2983	2.692368	GACCAGGATGCAGGGGGA	60.692	66.667	0.00	0.00	31.97	4.81

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
70	71	2.251371	CTCGCCGCGATATCACGA	59.749	61.111	17.22	10.13	34.61	4.35
71	72	3.461982	GCTCGCCGCGATATCACG	61.462	66.667	17.22	6.15	34.61	4.35
88	89	1.675641	CCCTTCCTTGGGCAAGACG	60.676	63.158	0.00	0.00	40.84	4.18
92	93	1.697297	GATCCCCTTCCTTGGGCAA	59.303	57.895	0.00	0.00	45.78	4.52
185	186	1.735360	CCACACAGGTTGGTTGCTG	59.265	57.895	0.00	0.00	0.00	4.41
186	187	4.258206	CCACACAGGTTGGTTGCT	57.742	55.556	0.00	0.00	0.00	3.91
196	197	4.320456	AGAGCCGGCACCACACAG	62.320	66.667	31.54	0.00	0.00	3.66
197	198	4.314440	GAGAGCCGGCACCACACA	62.314	66.667	31.54	0.00	0.00	3.72
198	199	3.825160	TTGAGAGCCGGCACCACAC	62.825	63.158	31.54	15.24	0.00	3.82
199	200	3.535629	CTTGAGAGCCGGCACCACA	62.536	63.158	31.54	21.76	0.00	4.17
200	201	2.743928	CTTGAGAGCCGGCACCAC	60.744	66.667	31.54	19.36	0.00	4.16
201	202	3.241530	ACTTGAGAGCCGGCACCA	61.242	61.111	31.54	19.88	0.00	4.17
202	203	2.743928	CACTTGAGAGCCGGCACC	60.744	66.667	31.54	20.10	0.00	5.01
203	204	1.739562	CTCACTTGAGAGCCGGCAC	60.740	63.158	31.54	24.27	44.74	5.01
204	205	1.908299	TCTCACTTGAGAGCCGGCA	60.908	57.895	31.54	4.11	45.48	5.69
205	206	2.973899	TCTCACTTGAGAGCCGGC	59.026	61.111	21.89	21.89	45.48	6.13
253	254	1.664649	CGTGCCACTCGAGCTTGAA	60.665	57.895	13.61	0.00	0.00	2.69
267	268	2.094659	CACGGTGATCAGGTCGTGC	61.095	63.158	23.66	1.82	44.56	5.34
269	270	0.894184	ACTCACGGTGATCAGGTCGT	60.894	55.000	11.86	11.40	36.19	4.34
342	348	5.452255	ACATGCCAAATCCATCAGTAATCT	58.548	37.500	0.00	0.00	0.00	2.40
396	402	9.777575	TTTTCTAAGAAGTTCGGTTTTAAGTTG	57.222	29.630	0.00	0.00	0.00	3.16
417	423	4.079730	AGAGGTTTTGGACAGAGGTTTTCT	60.080	41.667	0.00	0.00	36.25	2.52
455	461	1.688197	CAAACATGGCAAGGTTGGAGT	59.312	47.619	12.46	0.00	29.04	3.85
487	493	4.555262	TGTTTTCCATTTCGATTTCCTGC	58.445	39.130	0.00	0.00	0.00	4.85
543	549	6.658391	GGCAAAATATAGAGCCTGATCTGAAT	59.342	38.462	0.38	0.00	43.70	2.57
733	867	4.202295	TGCAAGCCTAGATTCTGGAGTATG	60.202	45.833	0.00	0.00	0.00	2.39
740	874	4.978083	AACAATGCAAGCCTAGATTCTG	57.022	40.909	0.00	0.00	0.00	3.02
780	914	7.790027	AGTTTCTGCATCTACATAGTCTTGAT	58.210	34.615	0.00	0.00	0.00	2.57
912	1059	0.111061	AGCACTGTTGGAGCCATCAA	59.889	50.000	2.27	0.00	0.00	2.57
1592	1820	6.569179	ACAACAAAGTACAAAGCCGATATT	57.431	33.333	0.00	0.00	0.00	1.28
1897	2206	9.836864	ATATGATAAGAGCACATGAACTAACAA	57.163	29.630	0.00	0.00	0.00	2.83
1907	2216	6.845908	AGGGAACAATATGATAAGAGCACAT	58.154	36.000	0.00	0.00	0.00	3.21
1959	2268	4.486125	ACAAAAACTCCCAAGTGCAAAT	57.514	36.364	0.00	0.00	35.36	2.32
2117	2427	3.012518	AGTAGCTGATACGTACACGGTT	58.987	45.455	6.72	1.32	44.95	4.44
2127	2437	4.599047	AATGCTCCTCAGTAGCTGATAC	57.401	45.455	0.00	0.00	39.92	2.24
2138	2448	3.261580	CGTCATGTGTTAATGCTCCTCA	58.738	45.455	0.00	0.00	0.00	3.86
2179	2490	2.288640	ACTTTCGTACCTTGGGAAGTCG	60.289	50.000	0.00	0.00	0.00	4.18
2238	2552	1.844497	AGTCAAGTATTAGGGTGCCCC	59.156	52.381	3.17	2.16	45.90	5.80
2239	2553	2.772515	AGAGTCAAGTATTAGGGTGCCC	59.227	50.000	0.00	0.00	0.00	5.36
2240	2554	3.451178	TGAGAGTCAAGTATTAGGGTGCC	59.549	47.826	0.00	0.00	0.00	5.01
2241	2555	4.160626	AGTGAGAGTCAAGTATTAGGGTGC	59.839	45.833	0.00	0.00	0.00	5.01
2242	2556	5.923733	AGTGAGAGTCAAGTATTAGGGTG	57.076	43.478	0.00	0.00	0.00	4.61
2243	2557	6.130569	CCTAGTGAGAGTCAAGTATTAGGGT	58.869	44.000	0.00	0.00	0.00	4.34
2244	2558	6.039941	CACCTAGTGAGAGTCAAGTATTAGGG	59.960	46.154	0.00	0.00	35.23	3.53
2245	2559	6.603997	ACACCTAGTGAGAGTCAAGTATTAGG	59.396	42.308	0.96	0.00	36.96	2.69
2246	2560	7.633193	ACACCTAGTGAGAGTCAAGTATTAG	57.367	40.000	0.96	0.00	36.96	1.73
2247	2561	8.327271	AGTACACCTAGTGAGAGTCAAGTATTA	58.673	37.037	0.96	0.00	36.96	0.98
2309	2624	6.348540	GCGCCTATTTGGATCGATAAATCTTT	60.349	38.462	8.98	0.00	38.35	2.52
2392	2707	1.720781	AACCCACCGTAACTACCAGT	58.279	50.000	0.00	0.00	0.00	4.00
2394	2709	2.037511	CTCAAACCCACCGTAACTACCA	59.962	50.000	0.00	0.00	0.00	3.25
2409	2724	0.034896	TTGAGCGGGTCTCCTCAAAC	59.965	55.000	8.82	0.00	43.06	2.93
2445	2760	3.065510	CGCTCTTTGAGATCTCGGAGTAA	59.934	47.826	26.30	12.72	0.00	2.24
2448	2763	1.863624	GCGCTCTTTGAGATCTCGGAG	60.864	57.143	23.90	23.90	0.00	4.63
2510	2825	2.750237	GCGGTTCCAAATCGCCCT	60.750	61.111	6.06	0.00	43.17	5.19
2513	2828	4.174129	CCCGCGGTTCCAAATCGC	62.174	66.667	26.12	7.24	45.15	4.58
2516	2831	2.114411	ACACCCGCGGTTCCAAAT	59.886	55.556	26.12	0.00	31.02	2.32
2517	2832	2.888464	TTCACACCCGCGGTTCCAAA	62.888	55.000	26.12	9.89	31.02	3.28
2518	2833	2.888464	TTTCACACCCGCGGTTCCAA	62.888	55.000	26.12	7.05	31.02	3.53
2530	2845	3.010420	GGTCCATCCTAGCTTTTCACAC	58.990	50.000	0.00	0.00	0.00	3.82
2535	2850	2.158755	CCATCGGTCCATCCTAGCTTTT	60.159	50.000	0.00	0.00	0.00	2.27
2608	2923	1.478471	CCACAACTTCCCACATGGTCA	60.478	52.381	0.00	0.00	34.77	4.02
2609	2924	1.247567	CCACAACTTCCCACATGGTC	58.752	55.000	0.00	0.00	34.77	4.02
2610	2925	0.827507	GCCACAACTTCCCACATGGT	60.828	55.000	0.00	0.00	34.77	3.55
2611	2926	0.827089	TGCCACAACTTCCCACATGG	60.827	55.000	0.00	0.00	0.00	3.66
2612	2927	0.599558	CTGCCACAACTTCCCACATG	59.400	55.000	0.00	0.00	0.00	3.21
2632	2947	0.698238	CCCATCTTCCAGGGTCACAA	59.302	55.000	0.00	0.00	40.34	3.33
2640	2955	1.142465	CATCCTGGTCCCATCTTCCAG	59.858	57.143	0.00	0.00	45.67	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.