Multiple sequence alignment - TraesCS3A01G216200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G216200 chr3A 100.000 3226 0 0 1 3226 394025052 394028277 0.000000e+00 5958.0
1 TraesCS3A01G216200 chr3D 93.052 2562 68 26 726 3226 296039122 296041634 0.000000e+00 3644.0
2 TraesCS3A01G216200 chr3D 89.521 668 52 13 3 654 296038440 296039105 0.000000e+00 830.0
3 TraesCS3A01G216200 chr3B 93.757 1714 35 20 1547 3226 390453228 390454903 0.000000e+00 2507.0
4 TraesCS3A01G216200 chr3B 96.131 827 18 4 726 1547 390452359 390453176 0.000000e+00 1338.0
5 TraesCS3A01G216200 chr3B 85.455 660 61 21 1 654 390451712 390452342 0.000000e+00 654.0
6 TraesCS3A01G216200 chr7D 83.721 86 13 1 338 423 602187852 602187768 2.670000e-11 80.5
7 TraesCS3A01G216200 chr5A 84.848 66 7 3 360 424 501403334 501403397 2.690000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G216200 chr3A 394025052 394028277 3225 False 5958.000000 5958 100.0000 1 3226 1 chr3A.!!$F1 3225
1 TraesCS3A01G216200 chr3D 296038440 296041634 3194 False 2237.000000 3644 91.2865 3 3226 2 chr3D.!!$F1 3223
2 TraesCS3A01G216200 chr3B 390451712 390454903 3191 False 1499.666667 2507 91.7810 1 3226 3 chr3B.!!$F1 3225

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.669619 TAGCTCAACAACACCGACGA 59.330 50.0 0.0 0.0 0.0 4.20 F
126 127 0.741221 GTTGAGTGGTGCGAGATCCC 60.741 60.0 0.0 0.0 0.0 3.85 F
1603 1709 0.179004 AATGGACGACTTTGTGGCCA 60.179 50.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1585 1691 0.889186 GTGGCCACAAAGTCGTCCAT 60.889 55.0 31.23 0.0 0.00 3.41 R
1716 1823 1.101635 TGACGTAGCTCCGGGAGATG 61.102 60.0 27.95 14.9 28.73 2.90 R
2478 2620 0.674895 GAGCATGCTTCGGTTGGAGT 60.675 55.0 23.61 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.272490 CCTCTAGCTCAACAACACCGA 59.728 52.381 0.00 0.00 0.00 4.69
74 75 0.669619 TAGCTCAACAACACCGACGA 59.330 50.000 0.00 0.00 0.00 4.20
109 110 4.142337 CCCGAAACTAAAACCAACACAGTT 60.142 41.667 0.00 0.00 0.00 3.16
126 127 0.741221 GTTGAGTGGTGCGAGATCCC 60.741 60.000 0.00 0.00 0.00 3.85
193 195 4.283722 AGACTTAATGTAATAGAGGGCGGG 59.716 45.833 0.00 0.00 0.00 6.13
273 279 8.547173 AGGTGAGATGAGAAGATTTAAGTGAAT 58.453 33.333 0.00 0.00 0.00 2.57
274 280 9.823647 GGTGAGATGAGAAGATTTAAGTGAATA 57.176 33.333 0.00 0.00 0.00 1.75
317 323 6.959639 AAAAAGAGTAGAATGTTGCCTCAA 57.040 33.333 0.00 0.00 0.00 3.02
318 324 6.959639 AAAAGAGTAGAATGTTGCCTCAAA 57.040 33.333 0.00 0.00 0.00 2.69
319 325 6.959639 AAAGAGTAGAATGTTGCCTCAAAA 57.040 33.333 0.00 0.00 0.00 2.44
320 326 6.959639 AAGAGTAGAATGTTGCCTCAAAAA 57.040 33.333 0.00 0.00 0.00 1.94
387 432 8.347771 GTCGTTTAAGAGGGTCAAATTTAAACT 58.652 33.333 13.15 0.00 39.90 2.66
514 561 4.565564 GTGGTGATTATACAACCTCGTGAC 59.434 45.833 0.00 0.00 0.00 3.67
521 568 2.249844 ACAACCTCGTGACGGAAAAT 57.750 45.000 4.70 0.00 0.00 1.82
531 579 2.235536 GACGGAAAATGTGACGGCGG 62.236 60.000 13.24 0.00 0.00 6.13
545 593 1.065709 ACGGCGGTGGATGTATTTTCT 60.066 47.619 13.24 0.00 0.00 2.52
553 601 4.349930 GGTGGATGTATTTTCTAGGCCCTA 59.650 45.833 0.00 0.00 0.00 3.53
554 602 5.014228 GGTGGATGTATTTTCTAGGCCCTAT 59.986 44.000 0.00 0.00 0.00 2.57
591 640 1.712401 GTGTACGGTGGCGTATTTGA 58.288 50.000 0.00 0.00 0.00 2.69
603 652 5.463724 GTGGCGTATTTGAAACATTCCAAAA 59.536 36.000 0.00 0.00 36.10 2.44
636 685 5.401972 CAGTGCAAATTTACGCATCAAAAGA 59.598 36.000 6.49 0.00 40.89 2.52
637 686 6.089820 CAGTGCAAATTTACGCATCAAAAGAT 59.910 34.615 6.49 0.00 40.89 2.40
638 687 6.308766 AGTGCAAATTTACGCATCAAAAGATC 59.691 34.615 6.49 0.00 40.89 2.75
639 688 6.089283 GTGCAAATTTACGCATCAAAAGATCA 59.911 34.615 6.49 0.00 40.89 2.92
640 689 6.644181 TGCAAATTTACGCATCAAAAGATCAA 59.356 30.769 0.00 0.00 31.95 2.57
641 690 7.170489 TGCAAATTTACGCATCAAAAGATCAAA 59.830 29.630 0.00 0.00 31.95 2.69
642 691 8.170553 GCAAATTTACGCATCAAAAGATCAAAT 58.829 29.630 0.00 0.00 0.00 2.32
683 732 9.337091 CAAATTACCAGTTAAATCCAAGTTACG 57.663 33.333 0.00 0.00 0.00 3.18
684 733 6.484818 TTACCAGTTAAATCCAAGTTACGC 57.515 37.500 0.00 0.00 0.00 4.42
685 734 4.391155 ACCAGTTAAATCCAAGTTACGCA 58.609 39.130 0.00 0.00 0.00 5.24
686 735 4.214758 ACCAGTTAAATCCAAGTTACGCAC 59.785 41.667 0.00 0.00 0.00 5.34
687 736 4.454504 CCAGTTAAATCCAAGTTACGCACT 59.545 41.667 0.00 0.00 37.30 4.40
688 737 5.390567 CCAGTTAAATCCAAGTTACGCACTC 60.391 44.000 0.00 0.00 32.94 3.51
689 738 5.178623 CAGTTAAATCCAAGTTACGCACTCA 59.821 40.000 0.00 0.00 32.94 3.41
690 739 5.938125 AGTTAAATCCAAGTTACGCACTCAT 59.062 36.000 0.00 0.00 32.94 2.90
698 747 6.040247 CCAAGTTACGCACTCATACAAGATA 58.960 40.000 0.00 0.00 32.94 1.98
708 757 6.151144 GCACTCATACAAGATAAAGGTGGTTT 59.849 38.462 0.00 0.00 0.00 3.27
711 760 7.607991 ACTCATACAAGATAAAGGTGGTTTGAG 59.392 37.037 0.00 0.00 39.00 3.02
716 765 6.041979 ACAAGATAAAGGTGGTTTGAGCAATT 59.958 34.615 0.00 0.00 0.00 2.32
717 766 6.272822 AGATAAAGGTGGTTTGAGCAATTC 57.727 37.500 0.00 0.00 0.00 2.17
718 767 6.012745 AGATAAAGGTGGTTTGAGCAATTCT 58.987 36.000 0.00 0.00 0.00 2.40
719 768 7.175104 AGATAAAGGTGGTTTGAGCAATTCTA 58.825 34.615 0.00 0.00 0.00 2.10
720 769 7.669722 AGATAAAGGTGGTTTGAGCAATTCTAA 59.330 33.333 0.00 0.00 0.00 2.10
721 770 6.478512 AAAGGTGGTTTGAGCAATTCTAAA 57.521 33.333 0.00 0.00 0.00 1.85
722 771 6.478512 AAGGTGGTTTGAGCAATTCTAAAA 57.521 33.333 0.00 0.00 0.00 1.52
723 772 6.478512 AGGTGGTTTGAGCAATTCTAAAAA 57.521 33.333 0.00 0.00 27.09 1.94
745 794 5.869649 AAAAGGTGGTTTGAGCAATAAGT 57.130 34.783 0.00 0.00 0.00 2.24
746 795 6.969993 AAAAGGTGGTTTGAGCAATAAGTA 57.030 33.333 0.00 0.00 0.00 2.24
747 796 5.959618 AAGGTGGTTTGAGCAATAAGTAC 57.040 39.130 0.00 0.00 0.00 2.73
772 821 1.128809 TTTCTACGGTTCCCTGCCCA 61.129 55.000 0.00 0.00 0.00 5.36
806 855 2.576832 CCACAGCCAAAAGGCCAGG 61.577 63.158 5.01 1.75 35.12 4.45
961 1010 1.388065 CCACCCGCACCAAAAGACAA 61.388 55.000 0.00 0.00 0.00 3.18
1432 1486 5.681982 GTCACTAGTGTCGAACATATGCTAC 59.318 44.000 21.99 4.47 0.00 3.58
1453 1507 2.353505 CGCTGGCTATGCTACTGATGAT 60.354 50.000 0.00 0.00 0.00 2.45
1454 1508 3.119352 CGCTGGCTATGCTACTGATGATA 60.119 47.826 0.00 0.00 0.00 2.15
1594 1700 8.800332 TCTTCTTACTAAAAGTAATGGACGACT 58.200 33.333 0.28 0.00 39.68 4.18
1603 1709 0.179004 AATGGACGACTTTGTGGCCA 60.179 50.000 0.00 0.00 0.00 5.36
1622 1729 1.902508 CACCTGAGCTGAAGGTCCTTA 59.097 52.381 13.68 0.00 45.13 2.69
1903 2012 9.282247 GACTGAATTAATGCATGTAAAAGACAG 57.718 33.333 0.00 5.97 42.79 3.51
2180 2311 4.020617 CACTGCTCCCCGCTGGAA 62.021 66.667 0.00 0.00 44.57 3.53
2204 2335 0.616964 AGCTGGGCATGTCTCTCTCA 60.617 55.000 0.00 0.00 0.00 3.27
2207 2338 0.545071 TGGGCATGTCTCTCTCACCA 60.545 55.000 0.00 0.00 0.00 4.17
2233 2364 2.065512 CATCGGAACATGACGTCAACA 58.934 47.619 24.13 0.00 0.00 3.33
2416 2554 5.121768 AGTGCTAATTGTGGATACGTTGTTC 59.878 40.000 0.00 0.00 42.51 3.18
2478 2620 3.570550 CCCGTCCATGTAAAAACCAGAAA 59.429 43.478 0.00 0.00 0.00 2.52
2563 2718 1.831106 TGAATCACGGCTGTCCATACT 59.169 47.619 0.00 0.00 0.00 2.12
2564 2719 3.028130 TGAATCACGGCTGTCCATACTA 58.972 45.455 0.00 0.00 0.00 1.82
2565 2720 3.068165 TGAATCACGGCTGTCCATACTAG 59.932 47.826 0.00 0.00 0.00 2.57
2566 2721 2.139323 TCACGGCTGTCCATACTAGT 57.861 50.000 0.00 0.00 0.00 2.57
2567 2722 3.286329 TCACGGCTGTCCATACTAGTA 57.714 47.619 4.77 4.77 0.00 1.82
2568 2723 2.947652 TCACGGCTGTCCATACTAGTAC 59.052 50.000 4.31 0.00 0.00 2.73
3030 3186 2.770164 ATCCAGCACAGTGGTTCTAC 57.230 50.000 1.37 0.00 38.88 2.59
3031 3187 1.717032 TCCAGCACAGTGGTTCTACT 58.283 50.000 1.37 0.00 38.88 2.57
3032 3188 2.884320 TCCAGCACAGTGGTTCTACTA 58.116 47.619 1.37 0.00 38.88 1.82
3033 3189 3.441101 TCCAGCACAGTGGTTCTACTAT 58.559 45.455 1.37 0.00 38.88 2.12
3034 3190 4.606210 TCCAGCACAGTGGTTCTACTATA 58.394 43.478 1.37 0.00 38.88 1.31
3035 3191 4.401519 TCCAGCACAGTGGTTCTACTATAC 59.598 45.833 1.37 0.00 38.88 1.47
3036 3192 4.402793 CCAGCACAGTGGTTCTACTATACT 59.597 45.833 1.37 0.00 32.32 2.12
3037 3193 5.593095 CCAGCACAGTGGTTCTACTATACTA 59.407 44.000 1.37 0.00 32.32 1.82
3038 3194 6.459848 CCAGCACAGTGGTTCTACTATACTAC 60.460 46.154 1.37 0.00 32.32 2.73
3122 3278 3.895041 TGATGCCTATGTCCGTCTGATTA 59.105 43.478 0.00 0.00 0.00 1.75
3202 3365 2.159627 CCAACAAAGGCAGACGTGTATC 59.840 50.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 3.453679 GGGCGGCTCTCTCTTCGT 61.454 66.667 9.56 0.00 0.00 3.85
74 75 2.283529 TTTCGGGCGGCTCTCTCTT 61.284 57.895 9.56 0.00 0.00 2.85
109 110 2.710902 CGGGATCTCGCACCACTCA 61.711 63.158 0.00 0.00 0.00 3.41
126 127 1.003262 CCTTCCAATGTTTGCACGCG 61.003 55.000 3.53 3.53 0.00 6.01
193 195 5.049828 CCCAAAAACTCAATTCTCAACCAC 58.950 41.667 0.00 0.00 0.00 4.16
296 302 6.959639 TTTTGAGGCAACATTCTACTCTTT 57.040 33.333 0.00 0.00 41.41 2.52
297 303 6.959639 TTTTTGAGGCAACATTCTACTCTT 57.040 33.333 0.00 0.00 41.41 2.85
321 327 9.454859 CAAAGGGAGTATCATTCTACTCTTTTT 57.545 33.333 10.19 8.50 44.62 1.94
322 328 8.606830 ACAAAGGGAGTATCATTCTACTCTTTT 58.393 33.333 10.19 8.75 44.62 2.27
323 329 8.152023 ACAAAGGGAGTATCATTCTACTCTTT 57.848 34.615 10.19 0.00 44.62 2.52
324 330 7.741554 ACAAAGGGAGTATCATTCTACTCTT 57.258 36.000 10.19 0.00 44.62 2.85
414 459 4.202673 ACACCCAATCCAACATACTTCCTT 60.203 41.667 0.00 0.00 0.00 3.36
487 534 5.046878 ACGAGGTTGTATAATCACCACTTCA 60.047 40.000 0.00 0.00 0.00 3.02
514 561 2.322081 ACCGCCGTCACATTTTCCG 61.322 57.895 0.00 0.00 0.00 4.30
521 568 1.609635 ATACATCCACCGCCGTCACA 61.610 55.000 0.00 0.00 0.00 3.58
531 579 4.439253 AGGGCCTAGAAAATACATCCAC 57.561 45.455 2.82 0.00 0.00 4.02
603 652 3.825143 AAATTTGCACTGCCAACTTCT 57.175 38.095 0.00 0.00 0.00 2.85
611 660 2.594321 TGATGCGTAAATTTGCACTGC 58.406 42.857 5.42 2.11 45.07 4.40
679 728 6.533723 CACCTTTATCTTGTATGAGTGCGTAA 59.466 38.462 0.00 0.00 0.00 3.18
680 729 6.040247 CACCTTTATCTTGTATGAGTGCGTA 58.960 40.000 0.00 0.00 0.00 4.42
681 730 4.870426 CACCTTTATCTTGTATGAGTGCGT 59.130 41.667 0.00 0.00 0.00 5.24
682 731 4.271049 CCACCTTTATCTTGTATGAGTGCG 59.729 45.833 0.00 0.00 0.00 5.34
683 732 5.186198 ACCACCTTTATCTTGTATGAGTGC 58.814 41.667 0.00 0.00 0.00 4.40
684 733 7.390440 TCAAACCACCTTTATCTTGTATGAGTG 59.610 37.037 0.00 0.00 0.00 3.51
685 734 7.458397 TCAAACCACCTTTATCTTGTATGAGT 58.542 34.615 0.00 0.00 0.00 3.41
686 735 7.414540 GCTCAAACCACCTTTATCTTGTATGAG 60.415 40.741 0.00 0.00 33.14 2.90
687 736 6.374333 GCTCAAACCACCTTTATCTTGTATGA 59.626 38.462 0.00 0.00 0.00 2.15
688 737 6.150976 TGCTCAAACCACCTTTATCTTGTATG 59.849 38.462 0.00 0.00 0.00 2.39
689 738 6.245408 TGCTCAAACCACCTTTATCTTGTAT 58.755 36.000 0.00 0.00 0.00 2.29
690 739 5.626142 TGCTCAAACCACCTTTATCTTGTA 58.374 37.500 0.00 0.00 0.00 2.41
698 747 6.478512 TTTAGAATTGCTCAAACCACCTTT 57.521 33.333 0.00 0.00 0.00 3.11
722 771 6.233905 ACTTATTGCTCAAACCACCTTTTT 57.766 33.333 0.00 0.00 0.00 1.94
723 772 5.869649 ACTTATTGCTCAAACCACCTTTT 57.130 34.783 0.00 0.00 0.00 2.27
724 773 5.048991 CGTACTTATTGCTCAAACCACCTTT 60.049 40.000 0.00 0.00 0.00 3.11
725 774 4.454504 CGTACTTATTGCTCAAACCACCTT 59.545 41.667 0.00 0.00 0.00 3.50
726 775 4.000988 CGTACTTATTGCTCAAACCACCT 58.999 43.478 0.00 0.00 0.00 4.00
727 776 3.749609 ACGTACTTATTGCTCAAACCACC 59.250 43.478 0.00 0.00 0.00 4.61
728 777 5.636543 AGTACGTACTTATTGCTCAAACCAC 59.363 40.000 22.45 0.00 31.13 4.16
729 778 5.786311 AGTACGTACTTATTGCTCAAACCA 58.214 37.500 22.45 0.00 31.13 3.67
730 779 6.716898 AAGTACGTACTTATTGCTCAAACC 57.283 37.500 33.80 0.00 44.18 3.27
731 780 8.493547 AGAAAAGTACGTACTTATTGCTCAAAC 58.506 33.333 34.56 18.15 45.17 2.93
732 781 8.597662 AGAAAAGTACGTACTTATTGCTCAAA 57.402 30.769 34.56 0.00 45.17 2.69
733 782 9.132521 GTAGAAAAGTACGTACTTATTGCTCAA 57.867 33.333 34.56 12.47 45.17 3.02
734 783 7.482743 CGTAGAAAAGTACGTACTTATTGCTCA 59.517 37.037 34.56 16.98 45.17 4.26
735 784 7.044445 CCGTAGAAAAGTACGTACTTATTGCTC 60.044 40.741 34.56 24.66 45.17 4.26
736 785 6.749118 CCGTAGAAAAGTACGTACTTATTGCT 59.251 38.462 34.56 26.57 45.17 3.91
737 786 6.528072 ACCGTAGAAAAGTACGTACTTATTGC 59.472 38.462 34.56 24.45 45.17 3.56
738 787 8.452989 AACCGTAGAAAAGTACGTACTTATTG 57.547 34.615 34.56 21.90 45.17 1.90
739 788 7.755373 GGAACCGTAGAAAAGTACGTACTTATT 59.245 37.037 34.56 28.25 45.17 1.40
740 789 7.251281 GGAACCGTAGAAAAGTACGTACTTAT 58.749 38.462 34.56 25.76 45.17 1.73
741 790 6.349033 GGGAACCGTAGAAAAGTACGTACTTA 60.349 42.308 34.56 20.18 42.17 2.24
742 791 5.564848 GGGAACCGTAGAAAAGTACGTACTT 60.565 44.000 30.57 30.57 43.99 2.24
743 792 4.082733 GGGAACCGTAGAAAAGTACGTACT 60.083 45.833 22.45 22.45 43.51 2.73
744 793 4.166523 GGGAACCGTAGAAAAGTACGTAC 58.833 47.826 18.10 18.10 43.51 3.67
745 794 4.434713 GGGAACCGTAGAAAAGTACGTA 57.565 45.455 0.00 0.00 43.51 3.57
746 795 3.303881 GGGAACCGTAGAAAAGTACGT 57.696 47.619 0.00 0.00 43.51 3.57
772 821 1.338294 TGTGGATGTGGACGCGTTATT 60.338 47.619 15.53 0.00 0.00 1.40
806 855 7.547370 CCCACTATAAATATGCTGCTTCTACTC 59.453 40.741 0.00 0.00 0.00 2.59
1065 1114 3.561313 GCATAACTTCTCCCTGGTTTCCA 60.561 47.826 0.00 0.00 0.00 3.53
1066 1115 3.017442 GCATAACTTCTCCCTGGTTTCC 58.983 50.000 0.00 0.00 0.00 3.13
1071 1120 2.744494 GCAGAGCATAACTTCTCCCTGG 60.744 54.545 0.00 0.00 0.00 4.45
1326 1375 0.977627 TGCCATGAGGACCGTCAGAT 60.978 55.000 0.00 0.00 36.89 2.90
1432 1486 1.000171 TCATCAGTAGCATAGCCAGCG 60.000 52.381 0.00 0.00 37.01 5.18
1453 1507 3.775866 TCTGAATTTCCACCCCACGTATA 59.224 43.478 0.00 0.00 0.00 1.47
1454 1508 2.574369 TCTGAATTTCCACCCCACGTAT 59.426 45.455 0.00 0.00 0.00 3.06
1585 1691 0.889186 GTGGCCACAAAGTCGTCCAT 60.889 55.000 31.23 0.00 0.00 3.41
1594 1700 1.529010 CAGCTCAGGTGGCCACAAA 60.529 57.895 35.78 19.46 0.00 2.83
1622 1729 5.482908 GAACTCCTGTAGTCATGTTCACAT 58.517 41.667 0.00 0.00 37.50 3.21
1716 1823 1.101635 TGACGTAGCTCCGGGAGATG 61.102 60.000 27.95 14.90 28.73 2.90
1903 2012 4.274459 GCACACCATATTCAGAATCTGACC 59.726 45.833 13.17 0.00 40.46 4.02
2180 2311 1.908340 GAGACATGCCCAGCTCCAGT 61.908 60.000 0.00 0.00 0.00 4.00
2458 2600 5.432885 AGTTTCTGGTTTTTACATGGACG 57.567 39.130 0.00 0.00 0.00 4.79
2459 2601 5.300792 TGGAGTTTCTGGTTTTTACATGGAC 59.699 40.000 0.00 0.00 0.00 4.02
2460 2602 5.450453 TGGAGTTTCTGGTTTTTACATGGA 58.550 37.500 0.00 0.00 0.00 3.41
2461 2603 5.782893 TGGAGTTTCTGGTTTTTACATGG 57.217 39.130 0.00 0.00 0.00 3.66
2462 2604 5.983118 GGTTGGAGTTTCTGGTTTTTACATG 59.017 40.000 0.00 0.00 0.00 3.21
2478 2620 0.674895 GAGCATGCTTCGGTTGGAGT 60.675 55.000 23.61 0.00 0.00 3.85
3026 3182 9.604569 ATCCTGAGACAGTAGTAGTATAGTAGA 57.395 37.037 0.00 0.00 0.00 2.59
3030 3186 7.332430 CGGAATCCTGAGACAGTAGTAGTATAG 59.668 44.444 0.00 0.00 0.00 1.31
3031 3187 7.160049 CGGAATCCTGAGACAGTAGTAGTATA 58.840 42.308 0.00 0.00 0.00 1.47
3032 3188 5.998981 CGGAATCCTGAGACAGTAGTAGTAT 59.001 44.000 0.00 0.00 0.00 2.12
3033 3189 5.366460 CGGAATCCTGAGACAGTAGTAGTA 58.634 45.833 0.00 0.00 0.00 1.82
3034 3190 4.200874 CGGAATCCTGAGACAGTAGTAGT 58.799 47.826 0.00 0.00 0.00 2.73
3035 3191 3.566322 CCGGAATCCTGAGACAGTAGTAG 59.434 52.174 0.00 0.00 0.00 2.57
3036 3192 3.053842 ACCGGAATCCTGAGACAGTAGTA 60.054 47.826 9.46 0.00 0.00 1.82
3037 3193 2.291670 ACCGGAATCCTGAGACAGTAGT 60.292 50.000 9.46 0.00 0.00 2.73
3038 3194 2.359531 GACCGGAATCCTGAGACAGTAG 59.640 54.545 9.46 0.00 0.00 2.57
3122 3278 5.746990 AGACACTCTAATTTAGTGCCACT 57.253 39.130 16.47 1.54 46.73 4.00
3202 3365 2.178912 TTTGCTACCTTTCTCCACCG 57.821 50.000 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.