Multiple sequence alignment - TraesCS3A01G216100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G216100 chr3A 100.000 5772 0 0 1 5772 393908569 393914340 0 10659
1 TraesCS3A01G216100 chr3D 96.608 5424 115 22 1 5394 295554465 295559849 0 8933
2 TraesCS3A01G216100 chr3B 98.733 1973 21 2 1693 3664 389791335 389793304 0 3502
3 TraesCS3A01G216100 chr3B 95.558 1801 44 17 3663 5437 389793466 389795256 0 2850
4 TraesCS3A01G216100 chr3B 96.129 1731 37 14 1 1707 389789594 389791318 0 2798


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G216100 chr3A 393908569 393914340 5771 False 10659 10659 100.000000 1 5772 1 chr3A.!!$F1 5771
1 TraesCS3A01G216100 chr3D 295554465 295559849 5384 False 8933 8933 96.608000 1 5394 1 chr3D.!!$F1 5393
2 TraesCS3A01G216100 chr3B 389789594 389795256 5662 False 3050 3502 96.806667 1 5437 3 chr3B.!!$F1 5436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 739 2.058595 CGAGAATCCGGGACCCAGT 61.059 63.158 12.15 0.00 0.00 4.00 F
1020 1049 0.179100 TGGCGAGCTCTATCAAGCAC 60.179 55.000 12.85 1.97 45.00 4.40 F
1519 1552 1.444933 TCCCTCTTTCAGGCAGGAAA 58.555 50.000 4.62 4.62 41.80 3.13 F
2219 2285 0.179111 CTGATGTAAAGGAGCCGCGA 60.179 55.000 8.23 0.00 0.00 5.87 F
2249 2315 0.977395 GAGGACCAGCTGTAACACCT 59.023 55.000 13.81 12.70 0.00 4.00 F
3317 3383 2.996621 GCGGTATCTACATGAGGAATGC 59.003 50.000 0.00 0.00 40.22 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 1719 0.611896 AAAGCTCCCATTTCCACCGG 60.612 55.000 0.00 0.00 0.0 5.28 R
2219 2285 1.270358 GCTGGTCCTCGAACTGAACTT 60.270 52.381 0.00 0.00 0.0 2.66 R
2906 2972 2.104963 ACAACTCAGAACTTCCACCTCC 59.895 50.000 0.00 0.00 0.0 4.30 R
3878 4112 1.065926 TCTGGTGCCAGATAACTGCAG 60.066 52.381 16.28 13.48 46.8 4.41 R
4020 4254 6.605594 ACAAAGAAACTCACCCATTCAGTTAA 59.394 34.615 0.00 0.00 30.0 2.01 R
5100 5355 0.109597 GATTGACAAACAGCGGGCAG 60.110 55.000 0.00 0.00 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.196382 CTTCGTCGTCTTCTCCGGCA 62.196 60.000 0.00 0.00 0.00 5.69
155 159 3.421741 TGAGCTGTCGTTTTCGTTTTTG 58.578 40.909 0.00 0.00 44.46 2.44
156 160 3.125487 TGAGCTGTCGTTTTCGTTTTTGA 59.875 39.130 0.00 0.00 44.46 2.69
157 161 4.201871 TGAGCTGTCGTTTTCGTTTTTGAT 60.202 37.500 0.00 0.00 44.46 2.57
158 162 4.035017 AGCTGTCGTTTTCGTTTTTGATG 58.965 39.130 0.00 0.00 44.46 3.07
451 458 2.813908 CTACGGCGTGCTGGGAAC 60.814 66.667 24.86 0.00 0.00 3.62
581 594 3.157949 GGCTCTCTCCCCTTCCCG 61.158 72.222 0.00 0.00 0.00 5.14
716 739 2.058595 CGAGAATCCGGGACCCAGT 61.059 63.158 12.15 0.00 0.00 4.00
867 895 5.010922 TCTCATTTGCATTTAAGCACTTGGT 59.989 36.000 0.00 0.00 45.61 3.67
900 928 4.938832 TGCGTTGTTTGTACTAGGCATTAT 59.061 37.500 0.00 0.00 42.74 1.28
1020 1049 0.179100 TGGCGAGCTCTATCAAGCAC 60.179 55.000 12.85 1.97 45.00 4.40
1277 1309 2.472488 GTCCTTCGCAAATGCAGTTTTG 59.528 45.455 8.17 8.17 42.21 2.44
1279 1311 2.219216 CCTTCGCAAATGCAGTTTTGTG 59.781 45.455 16.63 16.63 44.55 3.33
1292 1325 4.201676 GCAGTTTTGTGCTTTTGTTGTACC 60.202 41.667 0.00 0.00 40.54 3.34
1378 1411 6.096705 GCTAAATGCATATATGGGTTGCCATA 59.903 38.462 14.51 0.00 42.31 2.74
1479 1512 6.019075 GGTTGAGTTTTGAATTTTGTGGTAGC 60.019 38.462 0.00 0.00 0.00 3.58
1519 1552 1.444933 TCCCTCTTTCAGGCAGGAAA 58.555 50.000 4.62 4.62 41.80 3.13
1576 1609 3.456380 AGTGGCCATAAGACCATGTTT 57.544 42.857 9.72 0.00 38.46 2.83
2132 2198 4.526262 CGTCTGAATCTTATGGGATCTCCT 59.474 45.833 0.00 0.00 36.20 3.69
2219 2285 0.179111 CTGATGTAAAGGAGCCGCGA 60.179 55.000 8.23 0.00 0.00 5.87
2249 2315 0.977395 GAGGACCAGCTGTAACACCT 59.023 55.000 13.81 12.70 0.00 4.00
2906 2972 3.057315 AGGGTGATGTTGAATTTTGCTCG 60.057 43.478 0.00 0.00 0.00 5.03
3281 3347 3.375782 AGACAAAAGATTGCTGTTGGC 57.624 42.857 0.00 0.00 46.15 4.52
3317 3383 2.996621 GCGGTATCTACATGAGGAATGC 59.003 50.000 0.00 0.00 40.22 3.56
3580 3650 5.395486 GCGTCTTGTCTTGTGTAAATTTGAC 59.605 40.000 0.00 0.00 0.00 3.18
3614 3684 5.382664 ACTTTCTGTTTAACTTCCCCAGA 57.617 39.130 0.00 0.00 0.00 3.86
3670 3741 8.328014 TGCCAATATCCAGTCTTATATTATGCA 58.672 33.333 0.00 0.00 35.20 3.96
3719 3953 6.084326 ACAGGGTTGTATGTTTTCAATCAC 57.916 37.500 0.00 0.00 35.25 3.06
4020 4254 0.482887 ACCTAAGGGCCAGCAGTTTT 59.517 50.000 6.18 0.00 35.63 2.43
4600 4842 1.004200 CGTTTCGGCCCCAAGTAGT 60.004 57.895 0.00 0.00 0.00 2.73
4609 4851 1.340017 GCCCCAAGTAGTGATTCTGCA 60.340 52.381 0.00 0.00 0.00 4.41
4681 4923 2.045045 CCAGCCCGGCAAGATTCA 60.045 61.111 13.15 0.00 0.00 2.57
4777 5019 6.813649 GCATCTCTAACCGATATTAATGCTCA 59.186 38.462 0.00 0.00 35.35 4.26
4778 5020 7.201478 GCATCTCTAACCGATATTAATGCTCAC 60.201 40.741 0.00 0.00 35.35 3.51
4817 5059 9.799106 CAACTCAATTATGTATTATTCCCTCCT 57.201 33.333 0.00 0.00 0.00 3.69
4900 5142 6.576778 AGTAGGAATGCCAATAGGTTTACT 57.423 37.500 0.00 0.00 37.19 2.24
4989 5243 6.531594 TGCGAAGATCTTAGTTGTGATAACTG 59.468 38.462 15.80 0.00 0.00 3.16
4995 5250 6.785488 TCTTAGTTGTGATAACTGTTGCAG 57.215 37.500 4.76 0.00 37.52 4.41
5060 5315 3.379057 TGTGCCGTTTGTAGATCTCGATA 59.621 43.478 0.00 0.00 0.00 2.92
5159 5414 8.622948 TTTGTTTTGTGGTGGTATTTTTCTTT 57.377 26.923 0.00 0.00 0.00 2.52
5161 5416 8.257830 TGTTTTGTGGTGGTATTTTTCTTTTC 57.742 30.769 0.00 0.00 0.00 2.29
5183 5441 1.074084 TCTTTCGGGGGTGCATGTAAA 59.926 47.619 0.00 0.00 0.00 2.01
5241 5499 0.611896 TGCCTCACACTGATCGGAGA 60.612 55.000 9.00 2.43 45.75 3.71
5349 5616 1.068474 GTGCGTGCGACTATTCAAGT 58.932 50.000 0.00 0.00 42.80 3.16
5437 5704 2.038426 TCTTGATCCTCCGCTTTCAACA 59.962 45.455 0.00 0.00 0.00 3.33
5438 5705 2.787473 TGATCCTCCGCTTTCAACAT 57.213 45.000 0.00 0.00 0.00 2.71
5439 5706 3.904800 TGATCCTCCGCTTTCAACATA 57.095 42.857 0.00 0.00 0.00 2.29
5440 5707 3.531538 TGATCCTCCGCTTTCAACATAC 58.468 45.455 0.00 0.00 0.00 2.39
5441 5708 2.396590 TCCTCCGCTTTCAACATACC 57.603 50.000 0.00 0.00 0.00 2.73
5442 5709 1.626321 TCCTCCGCTTTCAACATACCA 59.374 47.619 0.00 0.00 0.00 3.25
5443 5710 2.039216 TCCTCCGCTTTCAACATACCAA 59.961 45.455 0.00 0.00 0.00 3.67
5444 5711 2.420022 CCTCCGCTTTCAACATACCAAG 59.580 50.000 0.00 0.00 0.00 3.61
5445 5712 2.420022 CTCCGCTTTCAACATACCAAGG 59.580 50.000 0.00 0.00 0.00 3.61
5446 5713 1.472480 CCGCTTTCAACATACCAAGGG 59.528 52.381 0.00 0.00 0.00 3.95
5447 5714 1.135402 CGCTTTCAACATACCAAGGGC 60.135 52.381 0.00 0.00 0.00 5.19
5448 5715 2.171003 GCTTTCAACATACCAAGGGCT 58.829 47.619 0.00 0.00 0.00 5.19
5449 5716 2.562738 GCTTTCAACATACCAAGGGCTT 59.437 45.455 0.00 0.00 0.00 4.35
5450 5717 3.006859 GCTTTCAACATACCAAGGGCTTT 59.993 43.478 0.00 0.00 0.00 3.51
5451 5718 4.559153 CTTTCAACATACCAAGGGCTTTG 58.441 43.478 1.78 1.78 36.50 2.77
5474 5741 3.957671 CAAAGATGGACATCACGGATG 57.042 47.619 14.16 11.04 44.71 3.51
5475 5742 3.534554 CAAAGATGGACATCACGGATGA 58.465 45.455 17.37 0.00 42.09 2.92
5482 5749 2.824546 ATCACGGATGATGGCGCT 59.175 55.556 7.64 0.00 44.26 5.92
5483 5750 1.596203 ATCACGGATGATGGCGCTG 60.596 57.895 7.64 0.00 44.26 5.18
5484 5751 3.945434 CACGGATGATGGCGCTGC 61.945 66.667 7.64 0.00 0.00 5.25
5485 5752 4.166888 ACGGATGATGGCGCTGCT 62.167 61.111 7.64 0.00 0.00 4.24
5486 5753 2.029518 CGGATGATGGCGCTGCTA 59.970 61.111 7.64 0.00 0.00 3.49
5487 5754 2.313172 CGGATGATGGCGCTGCTAC 61.313 63.158 7.64 0.00 0.00 3.58
5488 5755 1.227645 GGATGATGGCGCTGCTACA 60.228 57.895 7.64 0.00 0.00 2.74
5489 5756 0.815213 GGATGATGGCGCTGCTACAA 60.815 55.000 7.64 0.00 0.00 2.41
5490 5757 1.233019 GATGATGGCGCTGCTACAAT 58.767 50.000 7.64 0.00 0.00 2.71
5491 5758 1.196354 GATGATGGCGCTGCTACAATC 59.804 52.381 7.64 0.00 0.00 2.67
5492 5759 0.178767 TGATGGCGCTGCTACAATCT 59.821 50.000 7.64 0.00 0.00 2.40
5493 5760 0.585357 GATGGCGCTGCTACAATCTG 59.415 55.000 7.64 0.00 0.00 2.90
5494 5761 1.442526 ATGGCGCTGCTACAATCTGC 61.443 55.000 7.64 0.00 0.00 4.26
5495 5762 1.817099 GGCGCTGCTACAATCTGCT 60.817 57.895 7.64 0.00 0.00 4.24
5496 5763 0.530650 GGCGCTGCTACAATCTGCTA 60.531 55.000 7.64 0.00 0.00 3.49
5497 5764 0.857935 GCGCTGCTACAATCTGCTAG 59.142 55.000 0.00 0.00 0.00 3.42
5498 5765 1.804372 GCGCTGCTACAATCTGCTAGT 60.804 52.381 0.00 0.00 0.00 2.57
5499 5766 2.543861 GCGCTGCTACAATCTGCTAGTA 60.544 50.000 0.00 0.00 0.00 1.82
5500 5767 3.046390 CGCTGCTACAATCTGCTAGTAC 58.954 50.000 0.00 0.00 0.00 2.73
5501 5768 3.385577 GCTGCTACAATCTGCTAGTACC 58.614 50.000 0.00 0.00 0.00 3.34
5502 5769 3.181475 GCTGCTACAATCTGCTAGTACCA 60.181 47.826 0.00 0.00 0.00 3.25
5503 5770 4.680708 GCTGCTACAATCTGCTAGTACCAA 60.681 45.833 0.00 0.00 0.00 3.67
5504 5771 5.011090 TGCTACAATCTGCTAGTACCAAG 57.989 43.478 0.00 0.00 0.00 3.61
5505 5772 4.141937 TGCTACAATCTGCTAGTACCAAGG 60.142 45.833 0.00 0.00 0.00 3.61
5506 5773 4.141914 GCTACAATCTGCTAGTACCAAGGT 60.142 45.833 0.00 0.00 0.00 3.50
5507 5774 4.910458 ACAATCTGCTAGTACCAAGGTT 57.090 40.909 0.00 0.00 0.00 3.50
5508 5775 4.579869 ACAATCTGCTAGTACCAAGGTTG 58.420 43.478 0.00 6.29 0.00 3.77
5509 5776 4.041691 ACAATCTGCTAGTACCAAGGTTGT 59.958 41.667 0.00 7.26 0.00 3.32
5510 5777 4.910458 ATCTGCTAGTACCAAGGTTGTT 57.090 40.909 0.00 0.00 0.00 2.83
5511 5778 4.002906 TCTGCTAGTACCAAGGTTGTTG 57.997 45.455 0.00 0.00 0.00 3.33
5512 5779 3.389983 TCTGCTAGTACCAAGGTTGTTGT 59.610 43.478 0.00 0.00 0.00 3.32
5513 5780 3.472652 TGCTAGTACCAAGGTTGTTGTG 58.527 45.455 0.00 0.00 0.00 3.33
5514 5781 3.134985 TGCTAGTACCAAGGTTGTTGTGA 59.865 43.478 0.00 0.00 0.00 3.58
5515 5782 4.131596 GCTAGTACCAAGGTTGTTGTGAA 58.868 43.478 0.00 0.00 0.00 3.18
5516 5783 4.760204 GCTAGTACCAAGGTTGTTGTGAAT 59.240 41.667 0.00 0.00 0.00 2.57
5517 5784 5.334879 GCTAGTACCAAGGTTGTTGTGAATG 60.335 44.000 0.00 0.00 0.00 2.67
5518 5785 4.787551 AGTACCAAGGTTGTTGTGAATGA 58.212 39.130 0.00 0.00 0.00 2.57
5519 5786 5.197451 AGTACCAAGGTTGTTGTGAATGAA 58.803 37.500 0.00 0.00 0.00 2.57
5520 5787 4.654091 ACCAAGGTTGTTGTGAATGAAG 57.346 40.909 0.00 0.00 0.00 3.02
5521 5788 3.181476 ACCAAGGTTGTTGTGAATGAAGC 60.181 43.478 0.00 0.00 0.00 3.86
5522 5789 3.068590 CCAAGGTTGTTGTGAATGAAGCT 59.931 43.478 0.00 0.00 0.00 3.74
5523 5790 4.278170 CCAAGGTTGTTGTGAATGAAGCTA 59.722 41.667 0.00 0.00 0.00 3.32
5524 5791 5.221224 CCAAGGTTGTTGTGAATGAAGCTAA 60.221 40.000 0.00 0.00 0.00 3.09
5525 5792 6.272318 CAAGGTTGTTGTGAATGAAGCTAAA 58.728 36.000 0.00 0.00 0.00 1.85
5526 5793 6.463995 AGGTTGTTGTGAATGAAGCTAAAA 57.536 33.333 0.00 0.00 0.00 1.52
5527 5794 6.872920 AGGTTGTTGTGAATGAAGCTAAAAA 58.127 32.000 0.00 0.00 0.00 1.94
5549 5816 5.675684 AAAAAGGTTGTTGTGAATGGAGT 57.324 34.783 0.00 0.00 0.00 3.85
5550 5817 4.654091 AAAGGTTGTTGTGAATGGAGTG 57.346 40.909 0.00 0.00 0.00 3.51
5551 5818 1.956477 AGGTTGTTGTGAATGGAGTGC 59.044 47.619 0.00 0.00 0.00 4.40
5552 5819 1.000274 GGTTGTTGTGAATGGAGTGCC 60.000 52.381 0.00 0.00 0.00 5.01
5553 5820 0.950836 TTGTTGTGAATGGAGTGCCG 59.049 50.000 0.00 0.00 36.79 5.69
5554 5821 0.888736 TGTTGTGAATGGAGTGCCGG 60.889 55.000 0.00 0.00 36.79 6.13
5555 5822 1.303236 TTGTGAATGGAGTGCCGGG 60.303 57.895 2.18 0.00 36.79 5.73
5556 5823 3.134127 GTGAATGGAGTGCCGGGC 61.134 66.667 13.32 13.32 36.79 6.13
5557 5824 4.424711 TGAATGGAGTGCCGGGCC 62.425 66.667 17.97 8.02 36.79 5.80
5558 5825 4.424711 GAATGGAGTGCCGGGCCA 62.425 66.667 17.97 7.41 36.79 5.36
5559 5826 4.431131 AATGGAGTGCCGGGCCAG 62.431 66.667 17.97 0.00 34.74 4.85
5562 5829 4.785453 GGAGTGCCGGGCCAGAAG 62.785 72.222 17.97 0.00 0.00 2.85
5563 5830 3.706373 GAGTGCCGGGCCAGAAGA 61.706 66.667 17.97 0.00 0.00 2.87
5564 5831 3.011517 AGTGCCGGGCCAGAAGAT 61.012 61.111 17.97 0.00 0.00 2.40
5565 5832 2.044946 GTGCCGGGCCAGAAGATT 60.045 61.111 17.97 0.00 0.00 2.40
5566 5833 2.115291 GTGCCGGGCCAGAAGATTC 61.115 63.158 17.97 0.00 0.00 2.52
5567 5834 2.300967 TGCCGGGCCAGAAGATTCT 61.301 57.895 17.97 0.00 38.25 2.40
5568 5835 1.524849 GCCGGGCCAGAAGATTCTC 60.525 63.158 8.12 0.00 34.74 2.87
5569 5836 1.147153 CCGGGCCAGAAGATTCTCC 59.853 63.158 4.39 0.00 34.74 3.71
5570 5837 1.626356 CCGGGCCAGAAGATTCTCCA 61.626 60.000 4.39 0.00 34.74 3.86
5571 5838 0.253044 CGGGCCAGAAGATTCTCCAA 59.747 55.000 4.39 0.00 34.74 3.53
5572 5839 1.745141 CGGGCCAGAAGATTCTCCAAG 60.745 57.143 4.39 0.00 34.74 3.61
5573 5840 1.283321 GGGCCAGAAGATTCTCCAAGT 59.717 52.381 4.39 0.00 34.74 3.16
5574 5841 2.291217 GGGCCAGAAGATTCTCCAAGTT 60.291 50.000 4.39 0.00 34.74 2.66
5575 5842 3.425659 GGCCAGAAGATTCTCCAAGTTT 58.574 45.455 0.00 0.00 34.74 2.66
5576 5843 3.192212 GGCCAGAAGATTCTCCAAGTTTG 59.808 47.826 0.00 0.00 34.74 2.93
5577 5844 3.366781 GCCAGAAGATTCTCCAAGTTTGC 60.367 47.826 0.00 0.00 34.74 3.68
5578 5845 3.120060 CCAGAAGATTCTCCAAGTTTGCG 60.120 47.826 0.00 0.00 34.74 4.85
5579 5846 3.077359 AGAAGATTCTCCAAGTTTGCGG 58.923 45.455 0.00 0.00 29.94 5.69
5580 5847 1.826385 AGATTCTCCAAGTTTGCGGG 58.174 50.000 0.00 0.00 0.00 6.13
5581 5848 0.171231 GATTCTCCAAGTTTGCGGGC 59.829 55.000 0.00 0.00 0.00 6.13
5582 5849 0.251341 ATTCTCCAAGTTTGCGGGCT 60.251 50.000 0.00 0.00 0.00 5.19
5583 5850 1.172180 TTCTCCAAGTTTGCGGGCTG 61.172 55.000 0.00 0.00 0.00 4.85
5584 5851 1.600636 CTCCAAGTTTGCGGGCTGA 60.601 57.895 0.00 0.00 0.00 4.26
5585 5852 1.580845 CTCCAAGTTTGCGGGCTGAG 61.581 60.000 0.00 0.00 0.00 3.35
5586 5853 1.600636 CCAAGTTTGCGGGCTGAGA 60.601 57.895 0.00 0.00 0.00 3.27
5587 5854 1.576421 CAAGTTTGCGGGCTGAGAC 59.424 57.895 0.00 0.00 0.00 3.36
5588 5855 1.148273 AAGTTTGCGGGCTGAGACA 59.852 52.632 0.00 0.00 0.00 3.41
5589 5856 0.886490 AAGTTTGCGGGCTGAGACAG 60.886 55.000 0.00 0.00 34.12 3.51
5590 5857 2.032528 TTTGCGGGCTGAGACAGG 59.967 61.111 0.00 0.00 31.21 4.00
5591 5858 3.551496 TTTGCGGGCTGAGACAGGG 62.551 63.158 0.00 0.00 31.21 4.45
5593 5860 4.767255 GCGGGCTGAGACAGGGTG 62.767 72.222 0.00 0.00 31.21 4.61
5594 5861 2.997315 CGGGCTGAGACAGGGTGA 60.997 66.667 0.00 0.00 31.21 4.02
5595 5862 2.665603 GGGCTGAGACAGGGTGAC 59.334 66.667 0.00 0.00 31.21 3.67
5610 5877 3.420839 GGTGACCTAATTTCGCCAATG 57.579 47.619 0.00 0.00 42.36 2.82
5611 5878 2.752903 GGTGACCTAATTTCGCCAATGT 59.247 45.455 0.00 0.00 42.36 2.71
5612 5879 3.192633 GGTGACCTAATTTCGCCAATGTT 59.807 43.478 0.00 0.00 42.36 2.71
5613 5880 4.165779 GTGACCTAATTTCGCCAATGTTG 58.834 43.478 0.00 0.00 0.00 3.33
5614 5881 3.823873 TGACCTAATTTCGCCAATGTTGT 59.176 39.130 0.00 0.00 0.00 3.32
5615 5882 4.279671 TGACCTAATTTCGCCAATGTTGTT 59.720 37.500 0.00 0.00 0.00 2.83
5616 5883 5.208463 ACCTAATTTCGCCAATGTTGTTT 57.792 34.783 0.00 0.00 0.00 2.83
5617 5884 4.987912 ACCTAATTTCGCCAATGTTGTTTG 59.012 37.500 0.00 0.00 0.00 2.93
5618 5885 4.987912 CCTAATTTCGCCAATGTTGTTTGT 59.012 37.500 0.00 0.00 0.00 2.83
5619 5886 5.465056 CCTAATTTCGCCAATGTTGTTTGTT 59.535 36.000 0.00 0.00 0.00 2.83
5620 5887 6.642950 CCTAATTTCGCCAATGTTGTTTGTTA 59.357 34.615 0.00 0.00 0.00 2.41
5621 5888 7.330700 CCTAATTTCGCCAATGTTGTTTGTTAT 59.669 33.333 0.00 0.00 0.00 1.89
5622 5889 6.704512 ATTTCGCCAATGTTGTTTGTTATC 57.295 33.333 0.00 0.00 0.00 1.75
5623 5890 3.816091 TCGCCAATGTTGTTTGTTATCG 58.184 40.909 0.00 0.00 0.00 2.92
5624 5891 2.341168 CGCCAATGTTGTTTGTTATCGC 59.659 45.455 0.00 0.00 0.00 4.58
5625 5892 2.666022 GCCAATGTTGTTTGTTATCGCC 59.334 45.455 0.00 0.00 0.00 5.54
5626 5893 3.858877 GCCAATGTTGTTTGTTATCGCCA 60.859 43.478 0.00 0.00 0.00 5.69
5627 5894 4.493547 CCAATGTTGTTTGTTATCGCCAT 58.506 39.130 0.00 0.00 0.00 4.40
5628 5895 4.326817 CCAATGTTGTTTGTTATCGCCATG 59.673 41.667 0.00 0.00 0.00 3.66
5629 5896 3.567576 TGTTGTTTGTTATCGCCATGG 57.432 42.857 7.63 7.63 0.00 3.66
5630 5897 3.149981 TGTTGTTTGTTATCGCCATGGA 58.850 40.909 18.40 0.00 0.00 3.41
5631 5898 3.761218 TGTTGTTTGTTATCGCCATGGAT 59.239 39.130 18.40 3.10 0.00 3.41
5632 5899 4.104776 GTTGTTTGTTATCGCCATGGATG 58.895 43.478 18.40 7.05 0.00 3.51
5633 5900 3.351740 TGTTTGTTATCGCCATGGATGT 58.648 40.909 18.40 1.79 0.00 3.06
5634 5901 3.128415 TGTTTGTTATCGCCATGGATGTG 59.872 43.478 18.40 1.20 0.00 3.21
5635 5902 1.308047 TGTTATCGCCATGGATGTGC 58.692 50.000 18.40 0.00 0.00 4.57
5636 5903 1.134128 TGTTATCGCCATGGATGTGCT 60.134 47.619 18.40 0.00 0.00 4.40
5637 5904 1.265095 GTTATCGCCATGGATGTGCTG 59.735 52.381 18.40 0.00 0.00 4.41
5638 5905 0.758123 TATCGCCATGGATGTGCTGA 59.242 50.000 18.40 2.15 0.00 4.26
5639 5906 0.816825 ATCGCCATGGATGTGCTGAC 60.817 55.000 18.40 0.00 0.00 3.51
5640 5907 2.475466 CGCCATGGATGTGCTGACC 61.475 63.158 18.40 0.00 0.00 4.02
5641 5908 2.475466 GCCATGGATGTGCTGACCG 61.475 63.158 18.40 0.00 0.00 4.79
5642 5909 2.475466 CCATGGATGTGCTGACCGC 61.475 63.158 5.56 0.00 39.77 5.68
5643 5910 2.512286 ATGGATGTGCTGACCGCG 60.512 61.111 0.00 0.00 43.27 6.46
5644 5911 3.315142 ATGGATGTGCTGACCGCGT 62.315 57.895 4.92 0.00 43.27 6.01
5645 5912 2.742372 GGATGTGCTGACCGCGTT 60.742 61.111 4.92 0.00 43.27 4.84
5646 5913 2.476051 GATGTGCTGACCGCGTTG 59.524 61.111 4.92 0.00 43.27 4.10
5647 5914 3.027170 GATGTGCTGACCGCGTTGG 62.027 63.158 4.92 0.00 43.27 3.77
5656 5923 2.637025 CCGCGTTGGTCAACAAGG 59.363 61.111 4.92 11.07 45.33 3.61
5663 5930 2.112297 GGTCAACAAGGCCACGGA 59.888 61.111 5.01 0.00 43.39 4.69
5664 5931 1.966451 GGTCAACAAGGCCACGGAG 60.966 63.158 5.01 0.00 43.39 4.63
5665 5932 1.070786 GTCAACAAGGCCACGGAGA 59.929 57.895 5.01 0.00 0.00 3.71
5666 5933 0.321653 GTCAACAAGGCCACGGAGAT 60.322 55.000 5.01 0.00 0.00 2.75
5667 5934 0.321564 TCAACAAGGCCACGGAGATG 60.322 55.000 5.01 0.00 0.00 2.90
5668 5935 1.002134 AACAAGGCCACGGAGATGG 60.002 57.895 5.01 0.00 43.26 3.51
5669 5936 2.124570 CAAGGCCACGGAGATGGG 60.125 66.667 5.01 0.00 40.43 4.00
5670 5937 3.411517 AAGGCCACGGAGATGGGG 61.412 66.667 5.01 0.00 40.43 4.96
5673 5940 4.489771 GCCACGGAGATGGGGGTG 62.490 72.222 0.00 0.00 40.43 4.61
5674 5941 2.687200 CCACGGAGATGGGGGTGA 60.687 66.667 0.00 0.00 35.95 4.02
5675 5942 2.072487 CCACGGAGATGGGGGTGAT 61.072 63.158 0.00 0.00 35.95 3.06
5676 5943 1.447643 CACGGAGATGGGGGTGATC 59.552 63.158 0.00 0.00 32.23 2.92
5677 5944 1.002921 ACGGAGATGGGGGTGATCA 59.997 57.895 0.00 0.00 0.00 2.92
5678 5945 1.050988 ACGGAGATGGGGGTGATCAG 61.051 60.000 0.00 0.00 0.00 2.90
5679 5946 1.050988 CGGAGATGGGGGTGATCAGT 61.051 60.000 0.00 0.00 0.00 3.41
5680 5947 1.216990 GGAGATGGGGGTGATCAGTT 58.783 55.000 0.00 0.00 0.00 3.16
5681 5948 1.566231 GGAGATGGGGGTGATCAGTTT 59.434 52.381 0.00 0.00 0.00 2.66
5682 5949 2.648059 GAGATGGGGGTGATCAGTTTG 58.352 52.381 0.00 0.00 0.00 2.93
5683 5950 1.995542 AGATGGGGGTGATCAGTTTGT 59.004 47.619 0.00 0.00 0.00 2.83
5684 5951 3.189606 AGATGGGGGTGATCAGTTTGTA 58.810 45.455 0.00 0.00 0.00 2.41
5685 5952 3.788142 AGATGGGGGTGATCAGTTTGTAT 59.212 43.478 0.00 0.00 0.00 2.29
5686 5953 4.975147 AGATGGGGGTGATCAGTTTGTATA 59.025 41.667 0.00 0.00 0.00 1.47
5687 5954 4.771114 TGGGGGTGATCAGTTTGTATAG 57.229 45.455 0.00 0.00 0.00 1.31
5688 5955 4.108570 TGGGGGTGATCAGTTTGTATAGT 58.891 43.478 0.00 0.00 0.00 2.12
5689 5956 4.080582 TGGGGGTGATCAGTTTGTATAGTG 60.081 45.833 0.00 0.00 0.00 2.74
5690 5957 4.451900 GGGGTGATCAGTTTGTATAGTGG 58.548 47.826 0.00 0.00 0.00 4.00
5691 5958 4.451900 GGGTGATCAGTTTGTATAGTGGG 58.548 47.826 0.00 0.00 0.00 4.61
5692 5959 4.163458 GGGTGATCAGTTTGTATAGTGGGA 59.837 45.833 0.00 0.00 0.00 4.37
5693 5960 5.163195 GGGTGATCAGTTTGTATAGTGGGAT 60.163 44.000 0.00 0.00 0.00 3.85
5694 5961 5.992217 GGTGATCAGTTTGTATAGTGGGATC 59.008 44.000 0.00 0.00 0.00 3.36
5695 5962 6.183361 GGTGATCAGTTTGTATAGTGGGATCT 60.183 42.308 0.00 0.00 33.04 2.75
5696 5963 6.926272 GTGATCAGTTTGTATAGTGGGATCTC 59.074 42.308 0.00 0.00 33.04 2.75
5697 5964 5.871396 TCAGTTTGTATAGTGGGATCTCC 57.129 43.478 0.00 0.00 0.00 3.71
5698 5965 5.277250 TCAGTTTGTATAGTGGGATCTCCA 58.723 41.667 0.00 0.00 44.79 3.86
5706 5973 3.635099 TGGGATCTCCAGTACCCAG 57.365 57.895 0.00 0.00 46.04 4.45
5707 5974 1.015609 TGGGATCTCCAGTACCCAGA 58.984 55.000 0.00 0.00 46.04 3.86
5708 5975 1.062886 TGGGATCTCCAGTACCCAGAG 60.063 57.143 0.00 0.00 46.04 3.35
5709 5976 1.710816 GGATCTCCAGTACCCAGAGG 58.289 60.000 0.00 0.00 35.92 3.69
5710 5977 1.044611 GATCTCCAGTACCCAGAGGC 58.955 60.000 4.98 0.00 36.11 4.70
5711 5978 0.639392 ATCTCCAGTACCCAGAGGCT 59.361 55.000 0.00 0.00 36.11 4.58
5712 5979 1.305886 TCTCCAGTACCCAGAGGCTA 58.694 55.000 0.00 0.00 36.11 3.93
5713 5980 1.860240 TCTCCAGTACCCAGAGGCTAT 59.140 52.381 0.00 0.00 36.11 2.97
5714 5981 2.158445 TCTCCAGTACCCAGAGGCTATC 60.158 54.545 0.00 0.00 36.11 2.08
5715 5982 1.573857 TCCAGTACCCAGAGGCTATCA 59.426 52.381 0.00 0.00 36.11 2.15
5716 5983 2.023404 TCCAGTACCCAGAGGCTATCAA 60.023 50.000 0.00 0.00 36.11 2.57
5717 5984 2.975489 CCAGTACCCAGAGGCTATCAAT 59.025 50.000 0.00 0.00 36.11 2.57
5718 5985 3.007398 CCAGTACCCAGAGGCTATCAATC 59.993 52.174 0.00 0.00 36.11 2.67
5719 5986 3.900601 CAGTACCCAGAGGCTATCAATCT 59.099 47.826 0.00 0.00 36.11 2.40
5720 5987 5.080337 CAGTACCCAGAGGCTATCAATCTA 58.920 45.833 0.00 0.00 36.11 1.98
5721 5988 5.047660 CAGTACCCAGAGGCTATCAATCTAC 60.048 48.000 0.00 0.00 36.11 2.59
5722 5989 2.894126 ACCCAGAGGCTATCAATCTACG 59.106 50.000 0.00 0.00 36.11 3.51
5723 5990 2.353208 CCCAGAGGCTATCAATCTACGC 60.353 54.545 0.00 0.00 0.00 4.42
5724 5991 2.590073 CAGAGGCTATCAATCTACGCG 58.410 52.381 3.53 3.53 0.00 6.01
5725 5992 1.542030 AGAGGCTATCAATCTACGCGG 59.458 52.381 12.47 0.00 0.00 6.46
5726 5993 1.540267 GAGGCTATCAATCTACGCGGA 59.460 52.381 12.47 0.00 0.00 5.54
5727 5994 1.269998 AGGCTATCAATCTACGCGGAC 59.730 52.381 12.47 0.00 0.00 4.79
5729 5996 1.965083 CTATCAATCTACGCGGACGG 58.035 55.000 12.47 0.00 46.04 4.79
5730 5997 1.266175 CTATCAATCTACGCGGACGGT 59.734 52.381 12.47 0.00 46.04 4.83
5731 5998 0.248907 ATCAATCTACGCGGACGGTG 60.249 55.000 12.47 2.74 46.04 4.94
5732 5999 1.153901 CAATCTACGCGGACGGTGT 60.154 57.895 12.47 4.54 46.04 4.16
5733 6000 0.734942 CAATCTACGCGGACGGTGTT 60.735 55.000 12.47 0.00 46.04 3.32
5734 6001 0.037975 AATCTACGCGGACGGTGTTT 60.038 50.000 12.47 0.00 46.04 2.83
5735 6002 0.037975 ATCTACGCGGACGGTGTTTT 60.038 50.000 12.47 0.00 46.04 2.43
5736 6003 0.940519 TCTACGCGGACGGTGTTTTG 60.941 55.000 12.47 0.00 46.04 2.44
5737 6004 2.488852 CTACGCGGACGGTGTTTTGC 62.489 60.000 12.47 0.00 46.04 3.68
5740 6007 3.645975 CGGACGGTGTTTTGCGCT 61.646 61.111 9.73 0.00 0.00 5.92
5741 6008 2.251371 GGACGGTGTTTTGCGCTC 59.749 61.111 9.73 0.00 0.00 5.03
5742 6009 2.251642 GGACGGTGTTTTGCGCTCT 61.252 57.895 9.73 0.00 0.00 4.09
5743 6010 1.647084 GACGGTGTTTTGCGCTCTT 59.353 52.632 9.73 0.00 0.00 2.85
5744 6011 0.384353 GACGGTGTTTTGCGCTCTTC 60.384 55.000 9.73 0.00 0.00 2.87
5745 6012 1.438710 CGGTGTTTTGCGCTCTTCG 60.439 57.895 9.73 0.00 42.12 3.79
5746 6013 1.647084 GGTGTTTTGCGCTCTTCGT 59.353 52.632 9.73 0.00 41.07 3.85
5747 6014 0.384353 GGTGTTTTGCGCTCTTCGTC 60.384 55.000 9.73 0.00 41.07 4.20
5748 6015 0.303493 GTGTTTTGCGCTCTTCGTCA 59.697 50.000 9.73 0.00 41.07 4.35
5749 6016 0.581529 TGTTTTGCGCTCTTCGTCAG 59.418 50.000 9.73 0.00 41.07 3.51
5750 6017 0.110644 GTTTTGCGCTCTTCGTCAGG 60.111 55.000 9.73 0.00 41.07 3.86
5751 6018 1.841663 TTTTGCGCTCTTCGTCAGGC 61.842 55.000 9.73 0.00 41.07 4.85
5752 6019 4.742201 TGCGCTCTTCGTCAGGCC 62.742 66.667 9.73 0.00 41.07 5.19
5753 6020 4.742201 GCGCTCTTCGTCAGGCCA 62.742 66.667 5.01 0.00 41.07 5.36
5754 6021 2.048222 CGCTCTTCGTCAGGCCAA 60.048 61.111 5.01 0.00 0.00 4.52
5755 6022 2.383527 CGCTCTTCGTCAGGCCAAC 61.384 63.158 5.01 0.99 0.00 3.77
5756 6023 2.383527 GCTCTTCGTCAGGCCAACG 61.384 63.158 21.00 21.00 41.39 4.10
5757 6024 2.357034 TCTTCGTCAGGCCAACGC 60.357 61.111 21.91 1.63 39.90 4.84
5768 6035 4.760047 CCAACGCCCTCGGACCTG 62.760 72.222 0.00 0.00 40.69 4.00
5769 6036 4.003788 CAACGCCCTCGGACCTGT 62.004 66.667 0.00 0.00 40.69 4.00
5770 6037 3.692406 AACGCCCTCGGACCTGTC 61.692 66.667 0.00 0.00 40.69 3.51
5771 6038 4.680537 ACGCCCTCGGACCTGTCT 62.681 66.667 0.00 0.00 40.69 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 159 2.320367 ACGCGAATCGAAGCTATCATC 58.680 47.619 15.93 0.00 41.67 2.92
156 160 2.320367 GACGCGAATCGAAGCTATCAT 58.680 47.619 15.93 0.00 41.67 2.45
157 161 1.755161 GACGCGAATCGAAGCTATCA 58.245 50.000 15.93 0.00 41.67 2.15
158 162 0.698079 CGACGCGAATCGAAGCTATC 59.302 55.000 15.93 0.00 45.13 2.08
239 243 3.937079 CCTTCCATAAACGAACACCTACC 59.063 47.826 0.00 0.00 0.00 3.18
364 371 1.946650 CGCTCTCCGCCTCGAAATC 60.947 63.158 0.00 0.00 34.21 2.17
451 458 2.363795 TCCTCCCAGCCTACACGG 60.364 66.667 0.00 0.00 0.00 4.94
581 594 0.391966 GTAGCCGGAATAGGGACACC 59.608 60.000 5.05 0.00 0.00 4.16
716 739 2.856988 ACGGCCTTTCCCCCTCAA 60.857 61.111 0.00 0.00 0.00 3.02
832 860 2.105477 TGCAAATGAGATAGGAGGAGCC 59.895 50.000 0.00 0.00 0.00 4.70
867 895 0.244994 AAACAACGCAACAACCAGCA 59.755 45.000 0.00 0.00 0.00 4.41
900 928 5.763204 CCAAGAAGCAAACAAGTAGGAGTAA 59.237 40.000 0.00 0.00 0.00 2.24
1197 1229 2.264794 GCCGGGATGACAACGAGT 59.735 61.111 2.18 0.00 0.00 4.18
1277 1309 0.659123 CCGCGGTACAACAAAAGCAC 60.659 55.000 19.50 0.00 0.00 4.40
1279 1311 0.659123 CACCGCGGTACAACAAAAGC 60.659 55.000 33.70 0.00 0.00 3.51
1292 1325 2.026879 CCCCAAAACAACACCGCG 59.973 61.111 0.00 0.00 0.00 6.46
1378 1411 7.878644 GGTAACAGAAGAGTTTAGAGACCAATT 59.121 37.037 0.00 0.00 33.07 2.32
1479 1512 1.382522 ACCATAGTGCATTGAAGCCG 58.617 50.000 0.00 0.00 0.00 5.52
1519 1552 4.540715 CAAATAGAGGAAAGCCCCAGAAT 58.459 43.478 0.00 0.00 34.66 2.40
1576 1609 5.259632 TCTGAGACATCTGACTTCTGATCA 58.740 41.667 0.00 0.00 33.14 2.92
1685 1719 0.611896 AAAGCTCCCATTTCCACCGG 60.612 55.000 0.00 0.00 0.00 5.28
2132 2198 5.488919 ACAGGATCCTTTGGACTCTTTATCA 59.511 40.000 13.00 0.00 32.98 2.15
2219 2285 1.270358 GCTGGTCCTCGAACTGAACTT 60.270 52.381 0.00 0.00 0.00 2.66
2249 2315 4.585162 GTCTCTAAGTCTGGGCTGCTATTA 59.415 45.833 0.00 0.00 0.00 0.98
2906 2972 2.104963 ACAACTCAGAACTTCCACCTCC 59.895 50.000 0.00 0.00 0.00 4.30
3047 3113 3.872511 ACAGACATGCAAGAGAGAGAG 57.127 47.619 0.00 0.00 0.00 3.20
3317 3383 2.646930 TGGATAATGCAGCCAACTCTG 58.353 47.619 0.00 0.00 40.65 3.35
3670 3741 4.284234 GGAAATTATATGCTTGGTGGCCAT 59.716 41.667 9.72 0.00 31.53 4.40
3719 3953 5.065218 CCAAAATCTCCAACCTATCAGAACG 59.935 44.000 0.00 0.00 0.00 3.95
3878 4112 1.065926 TCTGGTGCCAGATAACTGCAG 60.066 52.381 16.28 13.48 46.80 4.41
4020 4254 6.605594 ACAAAGAAACTCACCCATTCAGTTAA 59.394 34.615 0.00 0.00 30.00 2.01
4280 4522 0.390860 AGAGATGGCGTGCCTATCAC 59.609 55.000 12.84 11.32 42.23 3.06
4507 4749 8.398878 AGAAAGATATGGAAAAACGGTACAAA 57.601 30.769 0.00 0.00 0.00 2.83
4600 4842 2.864114 GCTCCTGCTTGCAGAATCA 58.136 52.632 22.50 4.23 36.03 2.57
4636 4878 4.191544 TGTAGTCCTGATAATGCTGTTGC 58.808 43.478 0.00 0.00 40.20 4.17
4681 4923 1.071471 CCTTCCAACCACTCGCTGT 59.929 57.895 0.00 0.00 0.00 4.40
4777 5019 0.992695 GAGTTGCTAAGGGAAGGGGT 59.007 55.000 0.00 0.00 0.00 4.95
4778 5020 0.991920 TGAGTTGCTAAGGGAAGGGG 59.008 55.000 0.00 0.00 0.00 4.79
4817 5059 4.537135 ACGATTACTCAAAAGCAGAGGA 57.463 40.909 0.00 0.00 37.43 3.71
4989 5243 1.222115 GGGTGACTGACGACTGCAAC 61.222 60.000 0.00 0.00 0.00 4.17
5060 5315 2.267006 CAGCAGTGCGGAGACCAT 59.733 61.111 9.94 0.00 0.00 3.55
5100 5355 0.109597 GATTGACAAACAGCGGGCAG 60.110 55.000 0.00 0.00 0.00 4.85
5159 5414 0.404040 ATGCACCCCCGAAAGAAGAA 59.596 50.000 0.00 0.00 0.00 2.52
5161 5416 0.609131 ACATGCACCCCCGAAAGAAG 60.609 55.000 0.00 0.00 0.00 2.85
5183 5441 2.107204 ACCTTGCTGAGAACCAACTGAT 59.893 45.455 0.00 0.00 0.00 2.90
5241 5499 2.041928 CAGGGCCCCTCTCCTCTT 59.958 66.667 21.43 0.00 0.00 2.85
5349 5616 4.523173 CACAGGGAGTAGTACAAGAAGACA 59.477 45.833 2.52 0.00 0.00 3.41
5428 5695 2.171003 AGCCCTTGGTATGTTGAAAGC 58.829 47.619 0.00 0.00 0.00 3.51
5445 5712 5.543771 GATGTCCATCTTTGGCCAAAGCC 62.544 52.174 41.46 28.06 45.48 4.35
5446 5713 0.968405 TGTCCATCTTTGGCCAAAGC 59.032 50.000 41.46 30.33 45.48 3.51
5447 5714 2.827322 TGATGTCCATCTTTGGCCAAAG 59.173 45.455 40.93 40.93 46.82 2.77
5448 5715 2.562298 GTGATGTCCATCTTTGGCCAAA 59.438 45.455 28.65 28.65 43.29 3.28
5449 5716 2.170166 GTGATGTCCATCTTTGGCCAA 58.830 47.619 16.05 16.05 43.29 4.52
5450 5717 1.838112 GTGATGTCCATCTTTGGCCA 58.162 50.000 0.00 0.00 43.29 5.36
5451 5718 0.734889 CGTGATGTCCATCTTTGGCC 59.265 55.000 8.61 0.00 43.29 5.36
5452 5719 0.734889 CCGTGATGTCCATCTTTGGC 59.265 55.000 8.61 0.00 43.29 4.52
5453 5720 2.401583 TCCGTGATGTCCATCTTTGG 57.598 50.000 8.61 7.50 45.15 3.28
5454 5721 3.534554 TCATCCGTGATGTCCATCTTTG 58.465 45.455 8.61 0.00 40.55 2.77
5455 5722 3.912496 TCATCCGTGATGTCCATCTTT 57.088 42.857 8.61 0.00 40.55 2.52
5465 5732 1.596203 CAGCGCCATCATCCGTGAT 60.596 57.895 2.29 0.00 45.87 3.06
5466 5733 2.202919 CAGCGCCATCATCCGTGA 60.203 61.111 2.29 0.00 39.04 4.35
5467 5734 2.976692 TAGCAGCGCCATCATCCGTG 62.977 60.000 2.29 0.00 0.00 4.94
5468 5735 2.796193 TAGCAGCGCCATCATCCGT 61.796 57.895 2.29 0.00 0.00 4.69
5469 5736 2.029518 TAGCAGCGCCATCATCCG 59.970 61.111 2.29 0.00 0.00 4.18
5470 5737 0.815213 TTGTAGCAGCGCCATCATCC 60.815 55.000 2.29 0.00 0.00 3.51
5471 5738 1.196354 GATTGTAGCAGCGCCATCATC 59.804 52.381 2.29 0.00 0.00 2.92
5472 5739 1.202734 AGATTGTAGCAGCGCCATCAT 60.203 47.619 2.29 0.00 0.00 2.45
5473 5740 0.178767 AGATTGTAGCAGCGCCATCA 59.821 50.000 2.29 0.00 0.00 3.07
5474 5741 0.585357 CAGATTGTAGCAGCGCCATC 59.415 55.000 2.29 0.00 0.00 3.51
5475 5742 1.442526 GCAGATTGTAGCAGCGCCAT 61.443 55.000 2.29 0.00 0.00 4.40
5476 5743 2.108514 GCAGATTGTAGCAGCGCCA 61.109 57.895 2.29 0.00 0.00 5.69
5477 5744 0.530650 TAGCAGATTGTAGCAGCGCC 60.531 55.000 2.29 0.00 0.00 6.53
5478 5745 0.857935 CTAGCAGATTGTAGCAGCGC 59.142 55.000 0.00 0.00 0.00 5.92
5479 5746 2.215907 ACTAGCAGATTGTAGCAGCG 57.784 50.000 0.00 0.00 0.00 5.18
5480 5747 3.181475 TGGTACTAGCAGATTGTAGCAGC 60.181 47.826 7.89 0.00 40.87 5.25
5481 5748 4.655762 TGGTACTAGCAGATTGTAGCAG 57.344 45.455 7.89 0.00 40.87 4.24
5482 5749 4.141937 CCTTGGTACTAGCAGATTGTAGCA 60.142 45.833 7.89 7.89 42.94 3.49
5483 5750 4.141914 ACCTTGGTACTAGCAGATTGTAGC 60.142 45.833 2.96 2.96 37.88 3.58
5484 5751 5.599999 ACCTTGGTACTAGCAGATTGTAG 57.400 43.478 0.00 0.00 0.00 2.74
5485 5752 5.247564 ACAACCTTGGTACTAGCAGATTGTA 59.752 40.000 10.05 0.00 30.47 2.41
5486 5753 4.041691 ACAACCTTGGTACTAGCAGATTGT 59.958 41.667 0.00 7.51 0.00 2.71
5487 5754 4.579869 ACAACCTTGGTACTAGCAGATTG 58.420 43.478 0.00 0.00 0.00 2.67
5488 5755 4.910458 ACAACCTTGGTACTAGCAGATT 57.090 40.909 0.00 0.00 0.00 2.40
5489 5756 4.041691 ACAACAACCTTGGTACTAGCAGAT 59.958 41.667 0.00 0.00 0.00 2.90
5490 5757 3.389983 ACAACAACCTTGGTACTAGCAGA 59.610 43.478 0.00 0.00 0.00 4.26
5491 5758 3.498397 CACAACAACCTTGGTACTAGCAG 59.502 47.826 0.00 0.00 0.00 4.24
5492 5759 3.134985 TCACAACAACCTTGGTACTAGCA 59.865 43.478 0.00 0.00 0.00 3.49
5493 5760 3.735591 TCACAACAACCTTGGTACTAGC 58.264 45.455 0.00 0.00 0.00 3.42
5494 5761 5.995282 TCATTCACAACAACCTTGGTACTAG 59.005 40.000 0.00 0.00 0.00 2.57
5495 5762 5.931294 TCATTCACAACAACCTTGGTACTA 58.069 37.500 0.00 0.00 0.00 1.82
5496 5763 4.787551 TCATTCACAACAACCTTGGTACT 58.212 39.130 0.00 0.00 0.00 2.73
5497 5764 5.508200 TTCATTCACAACAACCTTGGTAC 57.492 39.130 0.00 0.00 0.00 3.34
5498 5765 4.037446 GCTTCATTCACAACAACCTTGGTA 59.963 41.667 0.00 0.00 0.00 3.25
5499 5766 3.181476 GCTTCATTCACAACAACCTTGGT 60.181 43.478 0.00 0.00 0.00 3.67
5500 5767 3.068590 AGCTTCATTCACAACAACCTTGG 59.931 43.478 0.00 0.00 0.00 3.61
5501 5768 4.311816 AGCTTCATTCACAACAACCTTG 57.688 40.909 0.00 0.00 0.00 3.61
5502 5769 6.463995 TTTAGCTTCATTCACAACAACCTT 57.536 33.333 0.00 0.00 0.00 3.50
5503 5770 6.463995 TTTTAGCTTCATTCACAACAACCT 57.536 33.333 0.00 0.00 0.00 3.50
5527 5794 5.418676 CACTCCATTCACAACAACCTTTTT 58.581 37.500 0.00 0.00 0.00 1.94
5528 5795 4.680440 GCACTCCATTCACAACAACCTTTT 60.680 41.667 0.00 0.00 0.00 2.27
5529 5796 3.181476 GCACTCCATTCACAACAACCTTT 60.181 43.478 0.00 0.00 0.00 3.11
5530 5797 2.362077 GCACTCCATTCACAACAACCTT 59.638 45.455 0.00 0.00 0.00 3.50
5531 5798 1.956477 GCACTCCATTCACAACAACCT 59.044 47.619 0.00 0.00 0.00 3.50
5532 5799 1.000274 GGCACTCCATTCACAACAACC 60.000 52.381 0.00 0.00 0.00 3.77
5533 5800 1.334960 CGGCACTCCATTCACAACAAC 60.335 52.381 0.00 0.00 0.00 3.32
5534 5801 0.950836 CGGCACTCCATTCACAACAA 59.049 50.000 0.00 0.00 0.00 2.83
5535 5802 0.888736 CCGGCACTCCATTCACAACA 60.889 55.000 0.00 0.00 0.00 3.33
5536 5803 1.586154 CCCGGCACTCCATTCACAAC 61.586 60.000 0.00 0.00 0.00 3.32
5537 5804 1.303236 CCCGGCACTCCATTCACAA 60.303 57.895 0.00 0.00 0.00 3.33
5538 5805 2.350895 CCCGGCACTCCATTCACA 59.649 61.111 0.00 0.00 0.00 3.58
5539 5806 3.134127 GCCCGGCACTCCATTCAC 61.134 66.667 3.91 0.00 0.00 3.18
5540 5807 4.424711 GGCCCGGCACTCCATTCA 62.425 66.667 12.58 0.00 0.00 2.57
5541 5808 4.424711 TGGCCCGGCACTCCATTC 62.425 66.667 12.58 0.00 0.00 2.67
5542 5809 4.431131 CTGGCCCGGCACTCCATT 62.431 66.667 12.58 0.00 0.00 3.16
5545 5812 4.785453 CTTCTGGCCCGGCACTCC 62.785 72.222 12.58 0.00 0.00 3.85
5546 5813 2.543067 AATCTTCTGGCCCGGCACTC 62.543 60.000 12.58 0.00 0.00 3.51
5547 5814 2.543067 GAATCTTCTGGCCCGGCACT 62.543 60.000 12.58 0.00 0.00 4.40
5548 5815 2.044946 AATCTTCTGGCCCGGCAC 60.045 61.111 12.58 1.03 0.00 5.01
5549 5816 2.257409 GAGAATCTTCTGGCCCGGCA 62.257 60.000 12.58 0.00 37.73 5.69
5550 5817 1.524849 GAGAATCTTCTGGCCCGGC 60.525 63.158 0.00 0.00 37.73 6.13
5551 5818 1.147153 GGAGAATCTTCTGGCCCGG 59.853 63.158 0.00 0.00 37.73 5.73
5552 5819 0.253044 TTGGAGAATCTTCTGGCCCG 59.747 55.000 0.00 0.00 37.73 6.13
5553 5820 1.283321 ACTTGGAGAATCTTCTGGCCC 59.717 52.381 0.00 0.00 37.73 5.80
5554 5821 2.797177 ACTTGGAGAATCTTCTGGCC 57.203 50.000 0.00 0.00 37.73 5.36
5555 5822 3.366781 GCAAACTTGGAGAATCTTCTGGC 60.367 47.826 0.00 0.00 37.73 4.85
5556 5823 3.120060 CGCAAACTTGGAGAATCTTCTGG 60.120 47.826 0.00 0.00 37.73 3.86
5557 5824 3.120060 CCGCAAACTTGGAGAATCTTCTG 60.120 47.826 0.00 0.00 37.73 3.02
5558 5825 3.077359 CCGCAAACTTGGAGAATCTTCT 58.923 45.455 0.00 0.00 41.00 2.85
5559 5826 2.162408 CCCGCAAACTTGGAGAATCTTC 59.838 50.000 0.00 0.00 33.73 2.87
5560 5827 2.162681 CCCGCAAACTTGGAGAATCTT 58.837 47.619 0.00 0.00 33.73 2.40
5561 5828 1.826385 CCCGCAAACTTGGAGAATCT 58.174 50.000 0.00 0.00 33.73 2.40
5562 5829 0.171231 GCCCGCAAACTTGGAGAATC 59.829 55.000 0.00 0.00 0.00 2.52
5563 5830 0.251341 AGCCCGCAAACTTGGAGAAT 60.251 50.000 0.00 0.00 0.00 2.40
5564 5831 1.150536 AGCCCGCAAACTTGGAGAA 59.849 52.632 0.00 0.00 0.00 2.87
5565 5832 1.600636 CAGCCCGCAAACTTGGAGA 60.601 57.895 0.00 0.00 0.00 3.71
5566 5833 1.580845 CTCAGCCCGCAAACTTGGAG 61.581 60.000 0.00 0.00 0.00 3.86
5567 5834 1.600636 CTCAGCCCGCAAACTTGGA 60.601 57.895 0.00 0.00 0.00 3.53
5568 5835 1.600636 TCTCAGCCCGCAAACTTGG 60.601 57.895 0.00 0.00 0.00 3.61
5569 5836 1.165907 TGTCTCAGCCCGCAAACTTG 61.166 55.000 0.00 0.00 0.00 3.16
5570 5837 0.886490 CTGTCTCAGCCCGCAAACTT 60.886 55.000 0.00 0.00 0.00 2.66
5571 5838 1.302033 CTGTCTCAGCCCGCAAACT 60.302 57.895 0.00 0.00 0.00 2.66
5572 5839 2.328099 CCTGTCTCAGCCCGCAAAC 61.328 63.158 0.00 0.00 0.00 2.93
5573 5840 2.032528 CCTGTCTCAGCCCGCAAA 59.967 61.111 0.00 0.00 0.00 3.68
5574 5841 4.020617 CCCTGTCTCAGCCCGCAA 62.021 66.667 0.00 0.00 0.00 4.85
5576 5843 4.767255 CACCCTGTCTCAGCCCGC 62.767 72.222 0.00 0.00 0.00 6.13
5577 5844 2.997315 TCACCCTGTCTCAGCCCG 60.997 66.667 0.00 0.00 0.00 6.13
5578 5845 2.665603 GTCACCCTGTCTCAGCCC 59.334 66.667 0.00 0.00 0.00 5.19
5579 5846 0.614979 TAGGTCACCCTGTCTCAGCC 60.615 60.000 0.00 0.00 42.67 4.85
5580 5847 1.267121 TTAGGTCACCCTGTCTCAGC 58.733 55.000 0.00 0.00 42.67 4.26
5581 5848 4.508662 GAAATTAGGTCACCCTGTCTCAG 58.491 47.826 0.00 0.00 42.67 3.35
5582 5849 3.056107 CGAAATTAGGTCACCCTGTCTCA 60.056 47.826 0.00 0.00 42.67 3.27
5583 5850 3.522553 CGAAATTAGGTCACCCTGTCTC 58.477 50.000 0.00 0.00 42.67 3.36
5584 5851 2.354805 GCGAAATTAGGTCACCCTGTCT 60.355 50.000 0.00 0.00 42.67 3.41
5585 5852 2.007608 GCGAAATTAGGTCACCCTGTC 58.992 52.381 0.00 0.00 42.67 3.51
5586 5853 1.339727 GGCGAAATTAGGTCACCCTGT 60.340 52.381 0.00 0.00 42.67 4.00
5587 5854 1.339631 TGGCGAAATTAGGTCACCCTG 60.340 52.381 0.00 0.00 42.67 4.45
5588 5855 0.988832 TGGCGAAATTAGGTCACCCT 59.011 50.000 0.00 0.00 45.51 4.34
5589 5856 1.828979 TTGGCGAAATTAGGTCACCC 58.171 50.000 0.00 0.00 0.00 4.61
5590 5857 2.752903 ACATTGGCGAAATTAGGTCACC 59.247 45.455 0.00 0.00 0.00 4.02
5591 5858 4.165779 CAACATTGGCGAAATTAGGTCAC 58.834 43.478 0.00 0.00 0.00 3.67
5592 5859 3.823873 ACAACATTGGCGAAATTAGGTCA 59.176 39.130 0.00 0.00 0.00 4.02
5593 5860 4.434713 ACAACATTGGCGAAATTAGGTC 57.565 40.909 0.00 0.00 0.00 3.85
5594 5861 4.864704 AACAACATTGGCGAAATTAGGT 57.135 36.364 0.00 0.00 0.00 3.08
5595 5862 4.987912 ACAAACAACATTGGCGAAATTAGG 59.012 37.500 0.00 0.00 34.56 2.69
5596 5863 6.523676 AACAAACAACATTGGCGAAATTAG 57.476 33.333 0.00 0.00 34.56 1.73
5597 5864 7.061210 CGATAACAAACAACATTGGCGAAATTA 59.939 33.333 0.00 0.00 34.56 1.40
5598 5865 6.128956 CGATAACAAACAACATTGGCGAAATT 60.129 34.615 0.00 0.00 34.56 1.82
5599 5866 5.344665 CGATAACAAACAACATTGGCGAAAT 59.655 36.000 0.00 0.00 34.56 2.17
5600 5867 4.677378 CGATAACAAACAACATTGGCGAAA 59.323 37.500 0.00 0.00 34.56 3.46
5601 5868 4.222886 CGATAACAAACAACATTGGCGAA 58.777 39.130 0.00 0.00 34.56 4.70
5602 5869 3.816091 CGATAACAAACAACATTGGCGA 58.184 40.909 0.00 0.00 34.56 5.54
5603 5870 2.341168 GCGATAACAAACAACATTGGCG 59.659 45.455 0.00 0.00 34.56 5.69
5604 5871 2.666022 GGCGATAACAAACAACATTGGC 59.334 45.455 0.00 0.00 34.56 4.52
5605 5872 3.906998 TGGCGATAACAAACAACATTGG 58.093 40.909 0.00 0.00 34.56 3.16
5606 5873 4.326817 CCATGGCGATAACAAACAACATTG 59.673 41.667 0.00 0.00 36.37 2.82
5607 5874 4.219507 TCCATGGCGATAACAAACAACATT 59.780 37.500 6.96 0.00 0.00 2.71
5608 5875 3.761218 TCCATGGCGATAACAAACAACAT 59.239 39.130 6.96 0.00 0.00 2.71
5609 5876 3.149981 TCCATGGCGATAACAAACAACA 58.850 40.909 6.96 0.00 0.00 3.33
5610 5877 3.840890 TCCATGGCGATAACAAACAAC 57.159 42.857 6.96 0.00 0.00 3.32
5611 5878 3.761218 ACATCCATGGCGATAACAAACAA 59.239 39.130 6.96 0.00 0.00 2.83
5612 5879 3.128415 CACATCCATGGCGATAACAAACA 59.872 43.478 6.96 0.00 0.00 2.83
5613 5880 3.694734 CACATCCATGGCGATAACAAAC 58.305 45.455 6.96 0.00 0.00 2.93
5614 5881 2.098934 GCACATCCATGGCGATAACAAA 59.901 45.455 6.96 0.00 0.00 2.83
5615 5882 1.675483 GCACATCCATGGCGATAACAA 59.325 47.619 6.96 0.00 0.00 2.83
5616 5883 1.134128 AGCACATCCATGGCGATAACA 60.134 47.619 6.96 0.00 0.00 2.41
5617 5884 1.265095 CAGCACATCCATGGCGATAAC 59.735 52.381 6.96 0.00 0.00 1.89
5618 5885 1.140652 TCAGCACATCCATGGCGATAA 59.859 47.619 6.96 0.00 0.00 1.75
5619 5886 0.758123 TCAGCACATCCATGGCGATA 59.242 50.000 6.96 0.00 0.00 2.92
5620 5887 0.816825 GTCAGCACATCCATGGCGAT 60.817 55.000 6.96 0.00 0.00 4.58
5621 5888 1.450134 GTCAGCACATCCATGGCGA 60.450 57.895 6.96 0.00 0.00 5.54
5622 5889 2.475466 GGTCAGCACATCCATGGCG 61.475 63.158 6.96 2.78 0.00 5.69
5623 5890 2.475466 CGGTCAGCACATCCATGGC 61.475 63.158 6.96 0.00 0.00 4.40
5624 5891 3.817787 CGGTCAGCACATCCATGG 58.182 61.111 4.97 4.97 0.00 3.66
5639 5906 2.637025 CCTTGTTGACCAACGCGG 59.363 61.111 12.47 7.03 43.94 6.46
5640 5907 2.051345 GCCTTGTTGACCAACGCG 60.051 61.111 3.53 3.53 43.94 6.01
5641 5908 2.335011 GGCCTTGTTGACCAACGC 59.665 61.111 0.00 5.75 43.94 4.84
5642 5909 1.358759 GTGGCCTTGTTGACCAACG 59.641 57.895 3.32 0.00 43.94 4.10
5643 5910 1.358759 CGTGGCCTTGTTGACCAAC 59.641 57.895 3.32 5.97 41.50 3.77
5644 5911 1.826054 CCGTGGCCTTGTTGACCAA 60.826 57.895 3.32 0.00 34.63 3.67
5645 5912 2.203280 CCGTGGCCTTGTTGACCA 60.203 61.111 3.32 0.00 0.00 4.02
5646 5913 1.966451 CTCCGTGGCCTTGTTGACC 60.966 63.158 3.32 0.00 0.00 4.02
5647 5914 0.321653 ATCTCCGTGGCCTTGTTGAC 60.322 55.000 3.32 0.00 0.00 3.18
5648 5915 0.321564 CATCTCCGTGGCCTTGTTGA 60.322 55.000 3.32 0.00 0.00 3.18
5649 5916 1.308069 CCATCTCCGTGGCCTTGTTG 61.308 60.000 3.32 0.00 31.43 3.33
5650 5917 1.002134 CCATCTCCGTGGCCTTGTT 60.002 57.895 3.32 0.00 31.43 2.83
5651 5918 2.671070 CCATCTCCGTGGCCTTGT 59.329 61.111 3.32 0.00 31.43 3.16
5652 5919 2.124570 CCCATCTCCGTGGCCTTG 60.125 66.667 3.32 0.00 37.96 3.61
5653 5920 3.411517 CCCCATCTCCGTGGCCTT 61.412 66.667 3.32 0.00 37.96 4.35
5656 5923 4.489771 CACCCCCATCTCCGTGGC 62.490 72.222 0.00 0.00 37.96 5.01
5657 5924 2.044806 GATCACCCCCATCTCCGTGG 62.045 65.000 0.00 0.00 39.05 4.94
5658 5925 1.337384 TGATCACCCCCATCTCCGTG 61.337 60.000 0.00 0.00 0.00 4.94
5659 5926 1.002921 TGATCACCCCCATCTCCGT 59.997 57.895 0.00 0.00 0.00 4.69
5660 5927 1.050988 ACTGATCACCCCCATCTCCG 61.051 60.000 0.00 0.00 0.00 4.63
5661 5928 1.216990 AACTGATCACCCCCATCTCC 58.783 55.000 0.00 0.00 0.00 3.71
5662 5929 2.025887 ACAAACTGATCACCCCCATCTC 60.026 50.000 0.00 0.00 0.00 2.75
5663 5930 1.995542 ACAAACTGATCACCCCCATCT 59.004 47.619 0.00 0.00 0.00 2.90
5664 5931 2.514458 ACAAACTGATCACCCCCATC 57.486 50.000 0.00 0.00 0.00 3.51
5665 5932 4.726825 ACTATACAAACTGATCACCCCCAT 59.273 41.667 0.00 0.00 0.00 4.00
5666 5933 4.080582 CACTATACAAACTGATCACCCCCA 60.081 45.833 0.00 0.00 0.00 4.96
5667 5934 4.451900 CACTATACAAACTGATCACCCCC 58.548 47.826 0.00 0.00 0.00 5.40
5668 5935 4.451900 CCACTATACAAACTGATCACCCC 58.548 47.826 0.00 0.00 0.00 4.95
5669 5936 4.163458 TCCCACTATACAAACTGATCACCC 59.837 45.833 0.00 0.00 0.00 4.61
5670 5937 5.353394 TCCCACTATACAAACTGATCACC 57.647 43.478 0.00 0.00 0.00 4.02
5671 5938 6.821388 AGATCCCACTATACAAACTGATCAC 58.179 40.000 0.00 0.00 31.94 3.06
5672 5939 6.042093 GGAGATCCCACTATACAAACTGATCA 59.958 42.308 0.00 0.00 31.94 2.92
5673 5940 6.042093 TGGAGATCCCACTATACAAACTGATC 59.958 42.308 0.00 0.00 40.82 2.92
5674 5941 5.905331 TGGAGATCCCACTATACAAACTGAT 59.095 40.000 0.00 0.00 40.82 2.90
5675 5942 5.277250 TGGAGATCCCACTATACAAACTGA 58.723 41.667 0.00 0.00 40.82 3.41
5676 5943 5.129485 ACTGGAGATCCCACTATACAAACTG 59.871 44.000 0.00 0.00 40.82 3.16
5677 5944 5.281314 ACTGGAGATCCCACTATACAAACT 58.719 41.667 0.00 0.00 40.82 2.66
5678 5945 5.615925 ACTGGAGATCCCACTATACAAAC 57.384 43.478 0.00 0.00 40.82 2.93
5679 5946 5.601313 GGTACTGGAGATCCCACTATACAAA 59.399 44.000 0.00 0.00 40.82 2.83
5680 5947 5.145564 GGTACTGGAGATCCCACTATACAA 58.854 45.833 0.00 0.00 40.82 2.41
5681 5948 4.448787 GGGTACTGGAGATCCCACTATACA 60.449 50.000 0.00 0.00 40.82 2.29
5682 5949 4.087907 GGGTACTGGAGATCCCACTATAC 58.912 52.174 0.00 3.62 40.82 1.47
5683 5950 3.730594 TGGGTACTGGAGATCCCACTATA 59.269 47.826 8.68 0.00 44.07 1.31
5684 5951 2.522705 TGGGTACTGGAGATCCCACTAT 59.477 50.000 8.68 0.00 44.07 2.12
5685 5952 1.934480 TGGGTACTGGAGATCCCACTA 59.066 52.381 8.68 0.00 44.07 2.74
5686 5953 0.716591 TGGGTACTGGAGATCCCACT 59.283 55.000 8.68 0.00 44.07 4.00
5687 5954 1.123928 CTGGGTACTGGAGATCCCAC 58.876 60.000 8.68 0.00 44.07 4.61
5688 5955 1.015609 TCTGGGTACTGGAGATCCCA 58.984 55.000 11.13 11.13 46.34 4.37
5689 5956 1.710816 CTCTGGGTACTGGAGATCCC 58.289 60.000 0.00 0.00 40.26 3.85
5690 5957 1.710816 CCTCTGGGTACTGGAGATCC 58.289 60.000 10.30 0.00 0.00 3.36
5691 5958 1.044611 GCCTCTGGGTACTGGAGATC 58.955 60.000 10.30 0.00 34.45 2.75
5692 5959 0.639392 AGCCTCTGGGTACTGGAGAT 59.361 55.000 10.30 0.02 34.45 2.75
5693 5960 1.305886 TAGCCTCTGGGTACTGGAGA 58.694 55.000 10.30 1.84 34.28 3.71
5694 5961 2.243810 GATAGCCTCTGGGTACTGGAG 58.756 57.143 0.00 0.00 38.55 3.86
5695 5962 1.573857 TGATAGCCTCTGGGTACTGGA 59.426 52.381 0.00 0.00 38.55 3.86
5696 5963 2.088104 TGATAGCCTCTGGGTACTGG 57.912 55.000 0.00 0.00 38.55 4.00
5697 5964 3.900601 AGATTGATAGCCTCTGGGTACTG 59.099 47.826 0.00 0.00 38.55 2.74
5698 5965 4.206244 AGATTGATAGCCTCTGGGTACT 57.794 45.455 0.00 0.00 38.55 2.73
5699 5966 4.082679 CGTAGATTGATAGCCTCTGGGTAC 60.083 50.000 0.00 0.00 38.55 3.34
5700 5967 4.079970 CGTAGATTGATAGCCTCTGGGTA 58.920 47.826 0.00 0.00 40.09 3.69
5701 5968 2.894126 CGTAGATTGATAGCCTCTGGGT 59.106 50.000 0.00 0.00 37.19 4.51
5702 5969 2.353208 GCGTAGATTGATAGCCTCTGGG 60.353 54.545 0.00 0.00 0.00 4.45
5703 5970 2.669670 CGCGTAGATTGATAGCCTCTGG 60.670 54.545 0.00 0.00 0.00 3.86
5704 5971 2.590073 CGCGTAGATTGATAGCCTCTG 58.410 52.381 0.00 0.00 0.00 3.35
5705 5972 1.542030 CCGCGTAGATTGATAGCCTCT 59.458 52.381 4.92 0.00 0.00 3.69
5706 5973 1.540267 TCCGCGTAGATTGATAGCCTC 59.460 52.381 4.92 0.00 0.00 4.70
5707 5974 1.269998 GTCCGCGTAGATTGATAGCCT 59.730 52.381 4.92 0.00 0.00 4.58
5708 5975 1.699343 GTCCGCGTAGATTGATAGCC 58.301 55.000 4.92 0.00 0.00 3.93
5709 5976 1.328439 CGTCCGCGTAGATTGATAGC 58.672 55.000 4.92 0.00 0.00 2.97
5710 5977 1.266175 ACCGTCCGCGTAGATTGATAG 59.734 52.381 4.92 0.00 36.15 2.08
5711 5978 1.002142 CACCGTCCGCGTAGATTGATA 60.002 52.381 4.92 0.00 36.15 2.15
5712 5979 0.248907 CACCGTCCGCGTAGATTGAT 60.249 55.000 4.92 0.00 36.15 2.57
5713 5980 1.138036 CACCGTCCGCGTAGATTGA 59.862 57.895 4.92 0.00 36.15 2.57
5714 5981 0.734942 AACACCGTCCGCGTAGATTG 60.735 55.000 4.92 0.00 36.15 2.67
5715 5982 0.037975 AAACACCGTCCGCGTAGATT 60.038 50.000 4.92 0.00 36.15 2.40
5716 5983 0.037975 AAAACACCGTCCGCGTAGAT 60.038 50.000 4.92 0.00 36.15 1.98
5717 5984 0.940519 CAAAACACCGTCCGCGTAGA 60.941 55.000 4.92 0.00 36.15 2.59
5718 5985 1.489824 CAAAACACCGTCCGCGTAG 59.510 57.895 4.92 0.00 36.15 3.51
5719 5986 2.596795 GCAAAACACCGTCCGCGTA 61.597 57.895 4.92 0.00 36.15 4.42
5720 5987 3.944233 GCAAAACACCGTCCGCGT 61.944 61.111 4.92 0.00 36.15 6.01
5723 5990 3.573489 GAGCGCAAAACACCGTCCG 62.573 63.158 11.47 0.00 0.00 4.79
5724 5991 1.782028 AAGAGCGCAAAACACCGTCC 61.782 55.000 11.47 0.00 0.00 4.79
5725 5992 0.384353 GAAGAGCGCAAAACACCGTC 60.384 55.000 11.47 0.00 0.00 4.79
5726 5993 1.647084 GAAGAGCGCAAAACACCGT 59.353 52.632 11.47 0.00 0.00 4.83
5727 5994 1.438710 CGAAGAGCGCAAAACACCG 60.439 57.895 11.47 0.00 0.00 4.94
5728 5995 0.384353 GACGAAGAGCGCAAAACACC 60.384 55.000 11.47 0.00 46.04 4.16
5729 5996 0.303493 TGACGAAGAGCGCAAAACAC 59.697 50.000 11.47 0.00 46.04 3.32
5730 5997 0.581529 CTGACGAAGAGCGCAAAACA 59.418 50.000 11.47 0.00 46.04 2.83
5731 5998 0.110644 CCTGACGAAGAGCGCAAAAC 60.111 55.000 11.47 0.00 46.04 2.43
5732 5999 1.841663 GCCTGACGAAGAGCGCAAAA 61.842 55.000 11.47 0.00 46.04 2.44
5733 6000 2.317609 GCCTGACGAAGAGCGCAAA 61.318 57.895 11.47 0.00 46.04 3.68
5734 6001 2.738521 GCCTGACGAAGAGCGCAA 60.739 61.111 11.47 0.00 46.04 4.85
5735 6002 4.742201 GGCCTGACGAAGAGCGCA 62.742 66.667 11.47 0.00 46.04 6.09
5736 6003 4.742201 TGGCCTGACGAAGAGCGC 62.742 66.667 3.32 0.00 46.04 5.92
5738 6005 2.383527 CGTTGGCCTGACGAAGAGC 61.384 63.158 22.44 0.00 42.82 4.09
5739 6006 2.383527 GCGTTGGCCTGACGAAGAG 61.384 63.158 28.39 6.81 42.82 2.85
5740 6007 2.357034 GCGTTGGCCTGACGAAGA 60.357 61.111 28.39 0.00 42.82 2.87
5751 6018 4.760047 CAGGTCCGAGGGCGTTGG 62.760 72.222 7.16 7.16 35.23 3.77
5752 6019 3.934391 GACAGGTCCGAGGGCGTTG 62.934 68.421 0.00 0.00 35.23 4.10
5753 6020 3.692406 GACAGGTCCGAGGGCGTT 61.692 66.667 0.00 0.00 35.23 4.84
5754 6021 4.680537 AGACAGGTCCGAGGGCGT 62.681 66.667 0.00 0.00 35.23 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.