Multiple sequence alignment - TraesCS3A01G215500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G215500 chr3A 100.000 5517 0 0 1 5517 393107519 393102003 0.000000e+00 10189.0
1 TraesCS3A01G215500 chr3A 97.727 44 1 0 4902 4945 393102577 393102534 5.930000e-10 76.8
2 TraesCS3A01G215500 chr3A 97.727 44 1 0 4943 4986 393102618 393102575 5.930000e-10 76.8
3 TraesCS3A01G215500 chr3D 95.586 2560 75 14 814 3370 295153241 295150717 0.000000e+00 4067.0
4 TraesCS3A01G215500 chr3D 90.456 1205 50 25 3457 4650 295150734 295149584 0.000000e+00 1528.0
5 TraesCS3A01G215500 chr3D 88.640 581 42 11 4944 5517 295149409 295148846 0.000000e+00 686.0
6 TraesCS3A01G215500 chr3D 93.370 181 9 1 4768 4945 295149547 295149367 1.180000e-66 265.0
7 TraesCS3A01G215500 chr3B 93.852 1464 55 12 814 2263 389313177 389311735 0.000000e+00 2172.0
8 TraesCS3A01G215500 chr3B 91.536 827 44 8 3467 4271 389310757 389309935 0.000000e+00 1116.0
9 TraesCS3A01G215500 chr3B 84.522 575 74 7 13 580 763850445 763851011 6.240000e-154 555.0
10 TraesCS3A01G215500 chr3B 96.599 294 4 3 2842 3130 389311140 389310848 2.990000e-132 483.0
11 TraesCS3A01G215500 chr3B 86.318 402 31 15 2266 2657 389311687 389311300 3.070000e-112 416.0
12 TraesCS3A01G215500 chr3B 81.289 481 50 18 40 518 741710576 741710134 2.440000e-93 353.0
13 TraesCS3A01G215500 chr3B 91.018 167 11 3 3131 3297 789487838 789487676 7.190000e-54 222.0
14 TraesCS3A01G215500 chr3B 84.971 173 13 6 4306 4478 389309932 389309773 4.420000e-36 163.0
15 TraesCS3A01G215500 chr3B 90.000 80 8 0 2740 2819 389311216 389311137 2.720000e-18 104.0
16 TraesCS3A01G215500 chr3B 94.545 55 2 1 3292 3345 389310842 389310788 3.540000e-12 84.2
17 TraesCS3A01G215500 chr5D 94.322 546 21 5 276 815 52954212 52953671 0.000000e+00 828.0
18 TraesCS3A01G215500 chr5D 95.604 273 10 2 1 273 52957090 52956820 2.360000e-118 436.0
19 TraesCS3A01G215500 chr5D 90.419 167 12 1 3135 3301 150835726 150835564 3.350000e-52 217.0
20 TraesCS3A01G215500 chr6B 95.674 393 12 2 1 388 13879218 13878826 1.300000e-175 627.0
21 TraesCS3A01G215500 chr6B 92.182 307 21 2 385 689 13858824 13858519 1.100000e-116 431.0
22 TraesCS3A01G215500 chr6B 93.548 93 3 2 723 815 13858519 13858430 9.640000e-28 135.0
23 TraesCS3A01G215500 chr2D 89.037 301 25 4 202 495 40892218 40892517 3.140000e-97 366.0
24 TraesCS3A01G215500 chr2D 92.697 178 7 2 3122 3297 560154060 560153887 9.170000e-63 252.0
25 TraesCS3A01G215500 chr5A 88.411 302 26 5 202 495 652040745 652040445 6.800000e-94 355.0
26 TraesCS3A01G215500 chr6D 92.638 163 7 4 3135 3297 431160825 431160668 4.300000e-56 230.0
27 TraesCS3A01G215500 chr1B 90.857 175 11 2 3130 3304 314565701 314565532 4.300000e-56 230.0
28 TraesCS3A01G215500 chrUn 91.018 167 11 3 3131 3297 41734377 41734215 7.190000e-54 222.0
29 TraesCS3A01G215500 chr4A 89.831 177 12 3 3121 3294 574285243 574285416 7.190000e-54 222.0
30 TraesCS3A01G215500 chr4A 89.773 176 12 3 3128 3302 97529990 97530160 2.590000e-53 220.0
31 TraesCS3A01G215500 chr1D 84.211 114 13 4 2541 2652 337900298 337900188 7.560000e-19 106.0
32 TraesCS3A01G215500 chr7A 91.304 46 4 0 4768 4813 26127359 26127314 4.610000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G215500 chr3A 393102003 393107519 5516 True 10189.000000 10189 100.000000 1 5517 1 chr3A.!!$R1 5516
1 TraesCS3A01G215500 chr3D 295148846 295153241 4395 True 1636.500000 4067 92.013000 814 5517 4 chr3D.!!$R1 4703
2 TraesCS3A01G215500 chr3B 389309773 389313177 3404 True 648.314286 2172 91.117286 814 4478 7 chr3B.!!$R3 3664
3 TraesCS3A01G215500 chr3B 763850445 763851011 566 False 555.000000 555 84.522000 13 580 1 chr3B.!!$F1 567
4 TraesCS3A01G215500 chr5D 52953671 52957090 3419 True 632.000000 828 94.963000 1 815 2 chr5D.!!$R2 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 3115 0.900647 CCCGAGGGTCTGTCTTCTGT 60.901 60.000 0.0 0.0 0.00 3.41 F
1226 3847 1.006102 ACGGAACAACTCCTCGCAG 60.006 57.895 0.0 0.0 42.85 5.18 F
1865 4506 0.034896 CGGTTAGAGTTGCAGGTGGT 59.965 55.000 0.0 0.0 0.00 4.16 F
3574 6354 0.588252 GCCTTCGCATCACGCATAAT 59.412 50.000 0.0 0.0 42.60 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 4422 0.318275 GTCCACGAGATCGAGATGGC 60.318 60.000 9.58 0.17 43.02 4.40 R
2731 5488 2.624838 CCACAAAGAGAAACATGCCTGT 59.375 45.455 0.00 0.00 37.12 4.00 R
3748 6528 1.071471 ACTGACCGGTTTCTGCAGG 59.929 57.895 20.64 0.00 0.00 4.85 R
5296 8138 0.027716 CTCAGATCGCTTGCATGTGC 59.972 55.000 8.22 0.00 42.50 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
274 276 1.551452 AGTGGACTGACCTGACTAGC 58.449 55.000 0.00 0.00 39.86 3.42
337 2944 2.887152 CCTTGAGGGAACAACTGGAAAG 59.113 50.000 0.00 0.00 37.23 2.62
345 2952 5.899547 AGGGAACAACTGGAAAGAAAGAAAT 59.100 36.000 0.00 0.00 0.00 2.17
346 2953 6.384015 AGGGAACAACTGGAAAGAAAGAAATT 59.616 34.615 0.00 0.00 0.00 1.82
420 3031 4.489306 AGTCAAGCTACCAGTTAATCCC 57.511 45.455 0.00 0.00 0.00 3.85
499 3115 0.900647 CCCGAGGGTCTGTCTTCTGT 60.901 60.000 0.00 0.00 0.00 3.41
521 3137 7.665559 TCTGTTATTTGATTGAGCTTACAACCT 59.334 33.333 0.00 0.00 32.50 3.50
526 3142 2.561478 TTGAGCTTACAACCTCCCAC 57.439 50.000 0.00 0.00 0.00 4.61
530 3146 1.073923 AGCTTACAACCTCCCACCTTG 59.926 52.381 0.00 0.00 0.00 3.61
570 3186 3.274288 AGCTACTGCATTTGTTAGAGCC 58.726 45.455 0.00 0.00 42.74 4.70
598 3214 6.533730 TGTTCTCAGATTGGAGCTAAAAGAA 58.466 36.000 0.00 0.00 34.84 2.52
600 3216 5.491982 TCTCAGATTGGAGCTAAAAGAACC 58.508 41.667 0.00 0.00 34.84 3.62
601 3217 5.013079 TCTCAGATTGGAGCTAAAAGAACCA 59.987 40.000 0.00 0.00 34.84 3.67
602 3218 5.003804 TCAGATTGGAGCTAAAAGAACCAC 58.996 41.667 0.00 0.00 0.00 4.16
603 3219 4.761739 CAGATTGGAGCTAAAAGAACCACA 59.238 41.667 0.00 0.00 0.00 4.17
604 3220 5.416952 CAGATTGGAGCTAAAAGAACCACAT 59.583 40.000 0.00 0.00 0.00 3.21
633 3249 1.067706 TCATGCAGAATTTTGTGGCCG 60.068 47.619 0.00 0.00 0.00 6.13
654 3272 3.498397 CGCAGGTGATTTAGTTGTCTGTT 59.502 43.478 0.00 0.00 0.00 3.16
689 3307 9.986833 TCTGTTATCAATTTTCGTGTATCATTG 57.013 29.630 0.00 0.00 0.00 2.82
703 3321 6.609533 GTGTATCATTGCCAGATGATCAATC 58.390 40.000 0.00 0.00 43.73 2.67
718 3336 6.673154 TGATCAATCATGTCTGTTCACATC 57.327 37.500 0.00 0.00 34.60 3.06
884 3502 1.894756 CCCGACACGCCCAAAAAGA 60.895 57.895 0.00 0.00 0.00 2.52
885 3503 1.281656 CCGACACGCCCAAAAAGAC 59.718 57.895 0.00 0.00 0.00 3.01
993 3611 4.743975 TACATCGCCGCCGTTGCA 62.744 61.111 0.00 0.00 37.61 4.08
1007 3628 3.436924 TGCATTCGCAGGCTGCTG 61.437 61.111 34.17 26.49 45.36 4.41
1094 3715 3.326006 TCAGGAAAGAGCTCATTCACAGT 59.674 43.478 27.58 10.54 0.00 3.55
1226 3847 1.006102 ACGGAACAACTCCTCGCAG 60.006 57.895 0.00 0.00 42.85 5.18
1308 3929 1.537202 ACGTTTCATCTCAAGGCAAGC 59.463 47.619 0.00 0.00 0.00 4.01
1309 3930 1.808945 CGTTTCATCTCAAGGCAAGCT 59.191 47.619 0.00 0.00 0.00 3.74
1310 3931 3.002791 CGTTTCATCTCAAGGCAAGCTA 58.997 45.455 0.00 0.00 0.00 3.32
1311 3932 3.624861 CGTTTCATCTCAAGGCAAGCTAT 59.375 43.478 0.00 0.00 0.00 2.97
1312 3933 4.811024 CGTTTCATCTCAAGGCAAGCTATA 59.189 41.667 0.00 0.00 0.00 1.31
1313 3934 5.277058 CGTTTCATCTCAAGGCAAGCTATAC 60.277 44.000 0.00 0.00 0.00 1.47
1314 3935 5.357742 TTCATCTCAAGGCAAGCTATACA 57.642 39.130 0.00 0.00 0.00 2.29
1315 3936 5.357742 TCATCTCAAGGCAAGCTATACAA 57.642 39.130 0.00 0.00 0.00 2.41
1316 3937 5.118990 TCATCTCAAGGCAAGCTATACAAC 58.881 41.667 0.00 0.00 0.00 3.32
1354 3975 3.652539 TTCGCGGTAGAAAGCCCGG 62.653 63.158 6.13 0.00 44.36 5.73
1358 3979 1.743995 CGGTAGAAAGCCCGGTTGG 60.744 63.158 0.00 0.00 40.54 3.77
1374 4001 1.068055 GTTGGCTTGACAGATTGGCAG 60.068 52.381 0.00 0.00 36.33 4.85
1393 4020 2.796651 CGGTAGGTTCGGAGGACG 59.203 66.667 0.00 0.00 46.11 4.79
1766 4397 3.639672 TCTACTGTATGAGGTGACGGA 57.360 47.619 0.00 0.00 0.00 4.69
1776 4407 3.921677 TGAGGTGACGGACTGAATTAAC 58.078 45.455 0.00 0.00 0.00 2.01
1777 4408 3.576982 TGAGGTGACGGACTGAATTAACT 59.423 43.478 0.00 0.00 0.00 2.24
1778 4409 3.926616 AGGTGACGGACTGAATTAACTG 58.073 45.455 0.00 0.00 0.00 3.16
1799 4430 3.189080 TGAATTCTTTGTGTGCCATCTCG 59.811 43.478 7.05 0.00 0.00 4.04
1821 4452 6.103330 TCGATCTCGTGGACAAAATAATTCA 58.897 36.000 0.00 0.00 40.80 2.57
1822 4453 6.761242 TCGATCTCGTGGACAAAATAATTCAT 59.239 34.615 0.00 0.00 40.80 2.57
1823 4454 6.847792 CGATCTCGTGGACAAAATAATTCATG 59.152 38.462 0.00 0.00 34.11 3.07
1824 4455 6.435430 TCTCGTGGACAAAATAATTCATGG 57.565 37.500 0.00 0.00 0.00 3.66
1825 4456 5.943416 TCTCGTGGACAAAATAATTCATGGT 59.057 36.000 0.00 0.00 0.00 3.55
1826 4457 5.948588 TCGTGGACAAAATAATTCATGGTG 58.051 37.500 0.00 0.00 0.00 4.17
1827 4458 5.707764 TCGTGGACAAAATAATTCATGGTGA 59.292 36.000 0.00 0.00 0.00 4.02
1828 4459 5.799936 CGTGGACAAAATAATTCATGGTGAC 59.200 40.000 0.00 0.00 0.00 3.67
1829 4460 6.099341 GTGGACAAAATAATTCATGGTGACC 58.901 40.000 0.00 0.00 0.00 4.02
1830 4461 5.186797 TGGACAAAATAATTCATGGTGACCC 59.813 40.000 0.00 0.00 0.00 4.46
1865 4506 0.034896 CGGTTAGAGTTGCAGGTGGT 59.965 55.000 0.00 0.00 0.00 4.16
2040 4681 4.287766 ACAGAGGTTCAGGTACCATTTC 57.712 45.455 15.94 2.92 40.82 2.17
2080 4721 8.816894 TCAAGTAAGAACCATCTCTAATCTGTT 58.183 33.333 0.00 0.00 33.77 3.16
2142 4783 2.555757 GCTTCTTTCTGCATGTGGAAGT 59.444 45.455 15.74 0.00 34.50 3.01
2217 4861 1.694150 CGATGGGATGACAGGTGGTAT 59.306 52.381 0.00 0.00 0.00 2.73
2242 4886 8.865590 TTGAATTTTTAAGAAGCACAACTACC 57.134 30.769 0.00 0.00 0.00 3.18
2620 5327 3.323979 CCTGTATGGGCTAATACGAGGTT 59.676 47.826 0.00 0.00 36.06 3.50
2695 5452 2.592308 GCCGATTTGAGGGCTCCT 59.408 61.111 0.00 0.00 45.93 3.69
2731 5488 0.889186 GGTTTGCTTTGAGGAGCGGA 60.889 55.000 0.00 0.00 45.64 5.54
2806 5563 3.058570 TGTTATGCTAGCAACCAAACACG 60.059 43.478 23.54 0.00 0.00 4.49
3119 5883 3.840078 TCACTCTTGTGGGATCTGATTGA 59.160 43.478 0.00 0.00 43.94 2.57
3192 5956 8.778141 ATTTCAATACGTACAGACTACATACG 57.222 34.615 0.00 10.12 45.53 3.06
3249 6013 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
3460 6234 8.457238 AAGGAGAAAATAAGATCAACCTATGC 57.543 34.615 0.00 0.00 0.00 3.14
3461 6235 7.810260 AGGAGAAAATAAGATCAACCTATGCT 58.190 34.615 0.00 0.00 0.00 3.79
3462 6236 8.938883 AGGAGAAAATAAGATCAACCTATGCTA 58.061 33.333 0.00 0.00 0.00 3.49
3463 6237 9.561069 GGAGAAAATAAGATCAACCTATGCTAA 57.439 33.333 0.00 0.00 0.00 3.09
3465 6239 9.905713 AGAAAATAAGATCAACCTATGCTAACA 57.094 29.630 0.00 0.00 0.00 2.41
3574 6354 0.588252 GCCTTCGCATCACGCATAAT 59.412 50.000 0.00 0.00 42.60 1.28
3575 6355 1.002468 GCCTTCGCATCACGCATAATT 60.002 47.619 0.00 0.00 42.60 1.40
3707 6487 2.747855 CCGGGCTTCTGTTCCTGC 60.748 66.667 0.00 0.00 0.00 4.85
3737 6517 1.408702 TGCTGATCATCGTCGGAATCA 59.591 47.619 0.00 0.00 0.00 2.57
3748 6528 2.408704 CGTCGGAATCATCTATTTCGGC 59.591 50.000 0.00 0.00 45.90 5.54
3787 6567 0.617413 ATGAGCAGGTCCAAGTGAGG 59.383 55.000 0.00 0.00 0.00 3.86
3844 6624 4.057428 GAGGCCGAGACACACGCT 62.057 66.667 0.00 0.00 0.00 5.07
3910 6690 7.178805 AGAGCAGCTGATCTCATCTATGATAAA 59.821 37.037 28.29 0.00 35.67 1.40
3919 6699 7.307131 TCTCATCTATGATAAAGGTGATGCA 57.693 36.000 0.00 0.00 33.73 3.96
3947 6733 6.968248 TCTCCTTATATCCCCAGCATCTAAAT 59.032 38.462 0.00 0.00 0.00 1.40
3962 6748 7.216317 CAGCATCTAAATTTGCAACGTTACTAC 59.784 37.037 0.00 0.00 41.35 2.73
3995 6788 2.166870 TGTTTTCCATGCATCCATCAGC 59.833 45.455 0.00 0.00 0.00 4.26
4017 6810 4.614306 GCGCGTAAACTTGGAAGGTATTTT 60.614 41.667 8.43 0.00 0.00 1.82
4023 6816 7.644945 CGTAAACTTGGAAGGTATTTTTCGTTT 59.355 33.333 0.00 0.00 0.00 3.60
4085 6878 0.602638 TCGCTTTGCACCCTGTAGTG 60.603 55.000 0.00 0.00 40.88 2.74
4188 6984 1.296068 GCAGGTGAAGAGAGCAGCT 59.704 57.895 0.00 0.00 44.17 4.24
4263 7060 2.310577 GCGTGTTGCAGATCAGTTTTC 58.689 47.619 0.00 0.00 45.45 2.29
4265 7062 2.549754 CGTGTTGCAGATCAGTTTTCCT 59.450 45.455 0.00 0.00 0.00 3.36
4271 7068 5.850557 TGCAGATCAGTTTTCCTTTTCAA 57.149 34.783 0.00 0.00 0.00 2.69
4272 7069 6.219417 TGCAGATCAGTTTTCCTTTTCAAA 57.781 33.333 0.00 0.00 0.00 2.69
4340 7137 4.559251 GCATCTCTGTAAAGTCTACGTGTG 59.441 45.833 0.00 0.00 0.00 3.82
4348 7145 3.360249 AAGTCTACGTGTGTGTGGTAC 57.640 47.619 0.00 0.00 0.00 3.34
4352 7149 1.338973 CTACGTGTGTGTGGTACCACT 59.661 52.381 37.91 22.52 46.30 4.00
4353 7150 1.401761 ACGTGTGTGTGGTACCACTA 58.598 50.000 37.91 26.66 46.30 2.74
4355 7152 1.792006 GTGTGTGTGGTACCACTAGC 58.208 55.000 37.91 28.27 46.30 3.42
4447 7244 7.963981 TCGATGTGATTCTTAGCTTTACTTTG 58.036 34.615 0.00 0.00 0.00 2.77
4461 7258 5.735922 GCTTTACTTTGACATGGACAGCAAA 60.736 40.000 0.00 0.00 0.00 3.68
4462 7259 5.843673 TTACTTTGACATGGACAGCAAAA 57.156 34.783 0.00 0.00 30.78 2.44
4473 7270 1.531365 CAGCAAAACAGGGAGGCCA 60.531 57.895 5.01 0.00 0.00 5.36
4515 7312 2.735237 GGTATTCCCTCGGCCTCG 59.265 66.667 0.00 0.00 37.82 4.63
4516 7313 2.029221 GTATTCCCTCGGCCTCGC 59.971 66.667 0.00 0.00 36.13 5.03
4517 7314 3.602677 TATTCCCTCGGCCTCGCG 61.603 66.667 0.00 0.00 36.13 5.87
4564 7361 6.353323 TCAAAACAAAGTCTGACATCCAGTA 58.647 36.000 10.88 0.00 43.38 2.74
4566 7363 3.914312 ACAAAGTCTGACATCCAGTACG 58.086 45.455 10.88 0.00 43.38 3.67
4568 7365 2.217510 AGTCTGACATCCAGTACGGT 57.782 50.000 10.88 0.00 43.38 4.83
4573 7370 2.492088 CTGACATCCAGTACGGTTCTCA 59.508 50.000 4.11 0.30 38.10 3.27
4577 7374 3.576982 ACATCCAGTACGGTTCTCAGAAA 59.423 43.478 0.00 0.00 35.57 2.52
4579 7376 3.493334 TCCAGTACGGTTCTCAGAAAGA 58.507 45.455 0.00 0.00 35.57 2.52
4580 7377 3.506455 TCCAGTACGGTTCTCAGAAAGAG 59.494 47.826 0.00 0.00 40.00 2.85
4581 7378 3.246619 CAGTACGGTTCTCAGAAAGAGC 58.753 50.000 0.00 0.00 44.35 4.09
4582 7379 2.891580 AGTACGGTTCTCAGAAAGAGCA 59.108 45.455 0.00 0.00 44.35 4.26
4583 7380 2.156343 ACGGTTCTCAGAAAGAGCAC 57.844 50.000 0.00 0.00 44.35 4.40
4584 7381 1.412710 ACGGTTCTCAGAAAGAGCACA 59.587 47.619 0.00 0.00 41.56 4.57
4585 7382 2.158957 ACGGTTCTCAGAAAGAGCACAA 60.159 45.455 0.00 0.00 41.56 3.33
4586 7383 2.872245 CGGTTCTCAGAAAGAGCACAAA 59.128 45.455 0.00 0.00 41.56 2.83
4587 7384 3.059325 CGGTTCTCAGAAAGAGCACAAAG 60.059 47.826 0.00 0.00 41.56 2.77
4588 7385 3.251972 GGTTCTCAGAAAGAGCACAAAGG 59.748 47.826 0.00 0.00 41.56 3.11
4589 7386 3.131709 TCTCAGAAAGAGCACAAAGGG 57.868 47.619 0.00 0.00 44.35 3.95
4590 7387 2.705658 TCTCAGAAAGAGCACAAAGGGA 59.294 45.455 0.00 0.00 44.35 4.20
4591 7388 3.072944 CTCAGAAAGAGCACAAAGGGAG 58.927 50.000 0.00 0.00 37.59 4.30
4592 7389 2.705658 TCAGAAAGAGCACAAAGGGAGA 59.294 45.455 0.00 0.00 0.00 3.71
4593 7390 3.136443 TCAGAAAGAGCACAAAGGGAGAA 59.864 43.478 0.00 0.00 0.00 2.87
4594 7391 3.885297 CAGAAAGAGCACAAAGGGAGAAA 59.115 43.478 0.00 0.00 0.00 2.52
4595 7392 4.339247 CAGAAAGAGCACAAAGGGAGAAAA 59.661 41.667 0.00 0.00 0.00 2.29
4596 7393 4.956075 AGAAAGAGCACAAAGGGAGAAAAA 59.044 37.500 0.00 0.00 0.00 1.94
4619 7416 3.024423 GCCATAACCGGCGAAAAAC 57.976 52.632 9.30 0.00 43.52 2.43
4620 7417 0.241481 GCCATAACCGGCGAAAAACA 59.759 50.000 9.30 0.00 43.52 2.83
4621 7418 1.135228 GCCATAACCGGCGAAAAACAT 60.135 47.619 9.30 0.00 43.52 2.71
4622 7419 2.525055 CCATAACCGGCGAAAAACATG 58.475 47.619 9.30 2.79 0.00 3.21
4623 7420 2.162608 CCATAACCGGCGAAAAACATGA 59.837 45.455 9.30 0.00 0.00 3.07
4624 7421 2.973419 TAACCGGCGAAAAACATGAC 57.027 45.000 9.30 0.00 0.00 3.06
4625 7422 1.025812 AACCGGCGAAAAACATGACA 58.974 45.000 9.30 0.00 0.00 3.58
4626 7423 1.025812 ACCGGCGAAAAACATGACAA 58.974 45.000 9.30 0.00 0.00 3.18
4627 7424 1.001815 ACCGGCGAAAAACATGACAAG 60.002 47.619 9.30 0.00 0.00 3.16
4628 7425 1.265635 CCGGCGAAAAACATGACAAGA 59.734 47.619 9.30 0.00 0.00 3.02
4629 7426 2.287308 CCGGCGAAAAACATGACAAGAA 60.287 45.455 9.30 0.00 0.00 2.52
4630 7427 3.367607 CGGCGAAAAACATGACAAGAAA 58.632 40.909 0.00 0.00 0.00 2.52
4631 7428 3.179599 CGGCGAAAAACATGACAAGAAAC 59.820 43.478 0.00 0.00 0.00 2.78
4632 7429 4.359706 GGCGAAAAACATGACAAGAAACT 58.640 39.130 0.00 0.00 0.00 2.66
4633 7430 4.441087 GGCGAAAAACATGACAAGAAACTC 59.559 41.667 0.00 0.00 0.00 3.01
4634 7431 4.441087 GCGAAAAACATGACAAGAAACTCC 59.559 41.667 0.00 0.00 0.00 3.85
4635 7432 5.733373 GCGAAAAACATGACAAGAAACTCCT 60.733 40.000 0.00 0.00 0.00 3.69
4636 7433 6.512741 GCGAAAAACATGACAAGAAACTCCTA 60.513 38.462 0.00 0.00 0.00 2.94
4637 7434 7.584987 CGAAAAACATGACAAGAAACTCCTAT 58.415 34.615 0.00 0.00 0.00 2.57
4638 7435 7.746475 CGAAAAACATGACAAGAAACTCCTATC 59.254 37.037 0.00 0.00 0.00 2.08
4639 7436 7.454260 AAAACATGACAAGAAACTCCTATCC 57.546 36.000 0.00 0.00 0.00 2.59
4640 7437 6.380079 AACATGACAAGAAACTCCTATCCT 57.620 37.500 0.00 0.00 0.00 3.24
4641 7438 7.496346 AACATGACAAGAAACTCCTATCCTA 57.504 36.000 0.00 0.00 0.00 2.94
4642 7439 7.682787 ACATGACAAGAAACTCCTATCCTAT 57.317 36.000 0.00 0.00 0.00 2.57
4643 7440 8.095452 ACATGACAAGAAACTCCTATCCTATT 57.905 34.615 0.00 0.00 0.00 1.73
4644 7441 9.213777 ACATGACAAGAAACTCCTATCCTATTA 57.786 33.333 0.00 0.00 0.00 0.98
4648 7445 9.495572 GACAAGAAACTCCTATCCTATTATTGG 57.504 37.037 0.00 0.00 0.00 3.16
4649 7446 9.225682 ACAAGAAACTCCTATCCTATTATTGGA 57.774 33.333 0.00 0.00 38.06 3.53
4655 7452 8.980832 ACTCCTATCCTATTATTGGAATGTCT 57.019 34.615 0.00 0.00 37.13 3.41
4656 7453 9.041354 ACTCCTATCCTATTATTGGAATGTCTC 57.959 37.037 0.00 0.00 37.13 3.36
4657 7454 8.380742 TCCTATCCTATTATTGGAATGTCTCC 57.619 38.462 0.00 0.00 45.64 3.71
4658 7455 8.186985 TCCTATCCTATTATTGGAATGTCTCCT 58.813 37.037 0.00 0.00 45.64 3.69
4659 7456 9.494055 CCTATCCTATTATTGGAATGTCTCCTA 57.506 37.037 0.00 0.00 45.64 2.94
4661 7458 7.246171 TCCTATTATTGGAATGTCTCCTAGC 57.754 40.000 0.00 0.00 45.64 3.42
4662 7459 6.071334 TCCTATTATTGGAATGTCTCCTAGCG 60.071 42.308 0.00 0.00 45.64 4.26
4663 7460 5.808366 ATTATTGGAATGTCTCCTAGCGA 57.192 39.130 0.00 0.00 45.64 4.93
4664 7461 5.808366 TTATTGGAATGTCTCCTAGCGAT 57.192 39.130 0.00 0.00 45.64 4.58
4665 7462 4.696479 ATTGGAATGTCTCCTAGCGATT 57.304 40.909 0.00 0.00 45.64 3.34
4666 7463 3.459232 TGGAATGTCTCCTAGCGATTG 57.541 47.619 0.00 0.00 45.64 2.67
4667 7464 2.766263 TGGAATGTCTCCTAGCGATTGT 59.234 45.455 0.00 0.00 45.64 2.71
4668 7465 3.958147 TGGAATGTCTCCTAGCGATTGTA 59.042 43.478 0.00 0.00 45.64 2.41
4669 7466 4.202121 TGGAATGTCTCCTAGCGATTGTAC 60.202 45.833 0.00 0.00 45.64 2.90
4670 7467 4.299978 GAATGTCTCCTAGCGATTGTACC 58.700 47.826 0.00 0.00 0.00 3.34
4671 7468 2.029623 TGTCTCCTAGCGATTGTACCC 58.970 52.381 0.00 0.00 0.00 3.69
4672 7469 2.029623 GTCTCCTAGCGATTGTACCCA 58.970 52.381 0.00 0.00 0.00 4.51
4673 7470 2.429610 GTCTCCTAGCGATTGTACCCAA 59.570 50.000 0.00 0.00 34.45 4.12
4674 7471 3.069729 GTCTCCTAGCGATTGTACCCAAT 59.930 47.826 0.00 0.00 43.97 3.16
4675 7472 4.280174 GTCTCCTAGCGATTGTACCCAATA 59.720 45.833 0.00 0.00 41.37 1.90
4676 7473 4.897076 TCTCCTAGCGATTGTACCCAATAA 59.103 41.667 0.00 0.00 41.37 1.40
4677 7474 4.952460 TCCTAGCGATTGTACCCAATAAC 58.048 43.478 0.00 0.00 41.37 1.89
4678 7475 4.062991 CCTAGCGATTGTACCCAATAACC 58.937 47.826 0.00 0.00 41.37 2.85
4679 7476 3.637911 AGCGATTGTACCCAATAACCA 57.362 42.857 0.00 0.00 41.37 3.67
4680 7477 3.958018 AGCGATTGTACCCAATAACCAA 58.042 40.909 0.00 0.00 41.37 3.67
4681 7478 4.337145 AGCGATTGTACCCAATAACCAAA 58.663 39.130 0.00 0.00 41.37 3.28
4682 7479 4.767928 AGCGATTGTACCCAATAACCAAAA 59.232 37.500 0.00 0.00 41.37 2.44
4683 7480 5.099575 GCGATTGTACCCAATAACCAAAAG 58.900 41.667 0.00 0.00 41.37 2.27
4684 7481 5.099575 CGATTGTACCCAATAACCAAAAGC 58.900 41.667 0.00 0.00 41.37 3.51
4685 7482 5.105917 CGATTGTACCCAATAACCAAAAGCT 60.106 40.000 0.00 0.00 41.37 3.74
4686 7483 5.715434 TTGTACCCAATAACCAAAAGCTC 57.285 39.130 0.00 0.00 0.00 4.09
4687 7484 4.083565 TGTACCCAATAACCAAAAGCTCC 58.916 43.478 0.00 0.00 0.00 4.70
4688 7485 2.536066 ACCCAATAACCAAAAGCTCCC 58.464 47.619 0.00 0.00 0.00 4.30
4689 7486 2.111792 ACCCAATAACCAAAAGCTCCCT 59.888 45.455 0.00 0.00 0.00 4.20
4690 7487 3.335484 ACCCAATAACCAAAAGCTCCCTA 59.665 43.478 0.00 0.00 0.00 3.53
4691 7488 3.954258 CCCAATAACCAAAAGCTCCCTAG 59.046 47.826 0.00 0.00 0.00 3.02
4692 7489 4.325030 CCCAATAACCAAAAGCTCCCTAGA 60.325 45.833 0.00 0.00 0.00 2.43
4693 7490 5.261216 CCAATAACCAAAAGCTCCCTAGAA 58.739 41.667 0.00 0.00 0.00 2.10
4694 7491 5.714806 CCAATAACCAAAAGCTCCCTAGAAA 59.285 40.000 0.00 0.00 0.00 2.52
4695 7492 6.127619 CCAATAACCAAAAGCTCCCTAGAAAG 60.128 42.308 0.00 0.00 0.00 2.62
4696 7493 4.724279 AACCAAAAGCTCCCTAGAAAGA 57.276 40.909 0.00 0.00 0.00 2.52
4735 7532 1.947146 GCCACAACCGGCGAAAAAC 60.947 57.895 9.30 0.00 43.52 2.43
4736 7533 1.433879 CCACAACCGGCGAAAAACA 59.566 52.632 9.30 0.00 0.00 2.83
4737 7534 0.031449 CCACAACCGGCGAAAAACAT 59.969 50.000 9.30 0.00 0.00 2.71
4738 7535 1.127701 CACAACCGGCGAAAAACATG 58.872 50.000 9.30 0.00 0.00 3.21
4739 7536 1.025812 ACAACCGGCGAAAAACATGA 58.974 45.000 9.30 0.00 0.00 3.07
4740 7537 1.268845 ACAACCGGCGAAAAACATGAC 60.269 47.619 9.30 0.00 0.00 3.06
4741 7538 1.025812 AACCGGCGAAAAACATGACA 58.974 45.000 9.30 0.00 0.00 3.58
4743 7540 1.001815 ACCGGCGAAAAACATGACAAG 60.002 47.619 9.30 0.00 0.00 3.16
4747 7551 3.179599 CGGCGAAAAACATGACAAGAAAC 59.820 43.478 0.00 0.00 0.00 2.78
4749 7553 4.803613 GGCGAAAAACATGACAAGAAACTT 59.196 37.500 0.00 0.00 0.00 2.66
4754 7558 9.107367 CGAAAAACATGACAAGAAACTTCTATC 57.893 33.333 0.00 0.00 36.28 2.08
4772 7576 9.968870 ACTTCTATCCTATTATTGAAACGTCTC 57.031 33.333 0.00 0.00 0.00 3.36
4779 7618 8.920174 TCCTATTATTGAAACGTCTCCTAATGA 58.080 33.333 0.00 0.00 0.00 2.57
4786 7625 2.906354 ACGTCTCCTAATGATTGCACC 58.094 47.619 0.00 0.00 0.00 5.01
4813 7652 2.644798 ACCAAAAGCTCCATGTAGTCCT 59.355 45.455 0.00 0.00 0.00 3.85
4817 7656 5.491982 CAAAAGCTCCATGTAGTCCTTACT 58.508 41.667 0.00 0.00 39.91 2.24
4822 7661 4.160626 GCTCCATGTAGTCCTTACTGTCTT 59.839 45.833 0.00 0.00 36.36 3.01
4913 7755 5.042463 TCTCTATAGTGGTGGAGTCAGAG 57.958 47.826 0.00 0.00 0.00 3.35
4942 7784 1.743394 GCAATAGTCCCTCAAAACCGG 59.257 52.381 0.00 0.00 0.00 5.28
4943 7785 2.365582 CAATAGTCCCTCAAAACCGGG 58.634 52.381 6.32 0.00 42.05 5.73
4944 7786 1.665137 ATAGTCCCTCAAAACCGGGT 58.335 50.000 6.32 0.00 41.40 5.28
4945 7787 0.688487 TAGTCCCTCAAAACCGGGTG 59.312 55.000 6.32 0.17 41.40 4.61
4946 7788 1.602605 GTCCCTCAAAACCGGGTGG 60.603 63.158 6.32 0.00 41.40 4.61
4947 7789 1.770927 TCCCTCAAAACCGGGTGGA 60.771 57.895 6.32 0.00 41.40 4.02
4948 7790 1.303317 CCCTCAAAACCGGGTGGAG 60.303 63.158 13.24 13.24 39.21 3.86
4949 7791 1.454539 CCTCAAAACCGGGTGGAGT 59.545 57.895 17.48 0.00 39.21 3.85
4950 7792 0.605589 CCTCAAAACCGGGTGGAGTC 60.606 60.000 17.48 0.00 39.21 3.36
4951 7793 0.107831 CTCAAAACCGGGTGGAGTCA 59.892 55.000 6.32 0.00 39.21 3.41
4952 7794 0.547075 TCAAAACCGGGTGGAGTCAA 59.453 50.000 6.32 0.00 39.21 3.18
4953 7795 1.064611 TCAAAACCGGGTGGAGTCAAA 60.065 47.619 6.32 0.00 39.21 2.69
4954 7796 1.336755 CAAAACCGGGTGGAGTCAAAG 59.663 52.381 6.32 0.00 39.21 2.77
4955 7797 0.822121 AAACCGGGTGGAGTCAAAGC 60.822 55.000 6.32 0.00 39.21 3.51
4956 7798 1.990160 AACCGGGTGGAGTCAAAGCA 61.990 55.000 6.32 0.00 39.21 3.91
4957 7799 1.228124 CCGGGTGGAGTCAAAGCAA 60.228 57.895 0.00 0.00 37.49 3.91
4958 7800 1.515521 CCGGGTGGAGTCAAAGCAAC 61.516 60.000 0.00 0.00 37.49 4.17
4959 7801 0.535102 CGGGTGGAGTCAAAGCAACT 60.535 55.000 0.00 0.00 0.00 3.16
4960 7802 1.270625 CGGGTGGAGTCAAAGCAACTA 60.271 52.381 0.00 0.00 0.00 2.24
4961 7803 2.615493 CGGGTGGAGTCAAAGCAACTAT 60.615 50.000 0.00 0.00 0.00 2.12
4962 7804 3.369052 CGGGTGGAGTCAAAGCAACTATA 60.369 47.826 0.00 0.00 0.00 1.31
4963 7805 4.192317 GGGTGGAGTCAAAGCAACTATAG 58.808 47.826 0.00 0.00 0.00 1.31
4964 7806 3.623510 GGTGGAGTCAAAGCAACTATAGC 59.376 47.826 0.00 0.00 0.00 2.97
4965 7807 4.253685 GTGGAGTCAAAGCAACTATAGCA 58.746 43.478 0.00 0.00 0.00 3.49
4966 7808 4.695455 GTGGAGTCAAAGCAACTATAGCAA 59.305 41.667 0.00 0.00 0.00 3.91
4967 7809 5.355350 GTGGAGTCAAAGCAACTATAGCAAT 59.645 40.000 0.00 0.00 0.00 3.56
4968 7810 6.538742 GTGGAGTCAAAGCAACTATAGCAATA 59.461 38.462 0.00 0.00 0.00 1.90
4969 7811 6.763135 TGGAGTCAAAGCAACTATAGCAATAG 59.237 38.462 0.00 0.00 40.90 1.73
4971 7813 7.042389 GGAGTCAAAGCAACTATAGCAATAGTC 60.042 40.741 0.00 0.00 46.17 2.59
4972 7814 6.763610 AGTCAAAGCAACTATAGCAATAGTCC 59.236 38.462 0.00 0.00 46.17 3.85
4973 7815 6.017852 GTCAAAGCAACTATAGCAATAGTCCC 60.018 42.308 0.00 0.00 46.17 4.46
4974 7816 5.896073 AAGCAACTATAGCAATAGTCCCT 57.104 39.130 0.00 0.00 46.17 4.20
4975 7817 5.476091 AGCAACTATAGCAATAGTCCCTC 57.524 43.478 0.00 0.00 46.17 4.30
4976 7818 4.901849 AGCAACTATAGCAATAGTCCCTCA 59.098 41.667 0.00 0.00 46.17 3.86
4977 7819 5.366768 AGCAACTATAGCAATAGTCCCTCAA 59.633 40.000 0.00 0.00 46.17 3.02
4978 7820 6.055588 GCAACTATAGCAATAGTCCCTCAAA 58.944 40.000 0.00 0.00 46.17 2.69
4979 7821 6.542370 GCAACTATAGCAATAGTCCCTCAAAA 59.458 38.462 0.00 0.00 46.17 2.44
4980 7822 7.467403 GCAACTATAGCAATAGTCCCTCAAAAC 60.467 40.741 0.00 0.00 46.17 2.43
4981 7823 6.592870 ACTATAGCAATAGTCCCTCAAAACC 58.407 40.000 0.00 0.00 44.05 3.27
4982 7824 2.711542 AGCAATAGTCCCTCAAAACCG 58.288 47.619 0.00 0.00 0.00 4.44
4991 7833 0.694196 CCTCAAAACCGGGTAAGGGA 59.306 55.000 6.32 0.00 35.02 4.20
4994 7836 1.072648 TCAAAACCGGGTAAGGGAGTG 59.927 52.381 6.32 0.00 35.02 3.51
5012 7854 4.803613 GGAGTGCAAAATTCGTTTTCAAGT 59.196 37.500 0.00 0.00 0.00 3.16
5045 7887 2.092592 CCTAGCCAAACCTTAATCCGGT 60.093 50.000 0.00 0.00 35.97 5.28
5087 7929 0.824759 CCTAGCTTCTACCGTGGCTT 59.175 55.000 0.00 0.00 36.40 4.35
5114 7956 3.409636 TCAGGATATATCACCCCTTCCCT 59.590 47.826 14.60 0.00 0.00 4.20
5125 7967 3.741476 CTTCCCTGCGCTTGCACC 61.741 66.667 9.73 0.00 45.56 5.01
5164 8006 2.497273 GCCAAAATCCACCATAGCACTT 59.503 45.455 0.00 0.00 0.00 3.16
5173 8015 1.524621 CATAGCACTTGCCCTCCCG 60.525 63.158 0.00 0.00 43.38 5.14
5174 8016 3.406595 ATAGCACTTGCCCTCCCGC 62.407 63.158 0.00 0.00 43.38 6.13
5191 8033 3.056313 GCGCCTGGCACTTCCAATC 62.056 63.158 20.29 0.00 46.01 2.67
5236 8078 4.444306 CCTCGAAATGGTAGGATTTAGCCA 60.444 45.833 0.00 0.00 35.28 4.75
5239 8081 4.152402 CGAAATGGTAGGATTTAGCCATCG 59.848 45.833 0.00 0.00 40.48 3.84
5241 8083 1.697432 TGGTAGGATTTAGCCATCGGG 59.303 52.381 0.00 0.00 37.18 5.14
5259 8101 2.776659 GGGTTACCACCGCTGATTC 58.223 57.895 2.98 0.00 45.39 2.52
5296 8138 3.231222 GAAGTGTCGATCCGTACCG 57.769 57.895 0.00 0.00 0.00 4.02
5297 8139 0.864797 GAAGTGTCGATCCGTACCGC 60.865 60.000 0.00 0.00 0.00 5.68
5298 8140 1.588824 AAGTGTCGATCCGTACCGCA 61.589 55.000 0.00 0.00 0.00 5.69
5299 8141 1.870901 GTGTCGATCCGTACCGCAC 60.871 63.158 0.00 0.00 0.00 5.34
5300 8142 2.334181 TGTCGATCCGTACCGCACA 61.334 57.895 0.00 0.00 0.00 4.57
5301 8143 1.065273 GTCGATCCGTACCGCACAT 59.935 57.895 0.00 0.00 0.00 3.21
5305 8147 1.078778 ATCCGTACCGCACATGCAA 60.079 52.632 4.49 0.00 42.21 4.08
5350 8192 1.380112 ACCCTCTCGCTCCTACACC 60.380 63.158 0.00 0.00 0.00 4.16
5382 8224 2.097038 CGCCGCTGAAGAGGAAGTG 61.097 63.158 4.06 0.00 37.14 3.16
5388 8230 1.202582 GCTGAAGAGGAAGTGCTACGA 59.797 52.381 0.00 0.00 0.00 3.43
5400 8248 2.184322 CTACGACATGTGGCCGCT 59.816 61.111 18.96 0.00 0.00 5.52
5415 8263 2.522680 GCTGGGGGCATGGGATTC 60.523 66.667 0.00 0.00 41.35 2.52
5431 8280 6.995511 TGGGATTCGTAAATAAAGGACAAG 57.004 37.500 0.00 0.00 0.00 3.16
5464 8313 2.761208 CGGTACTGGATTGACTCCTTCT 59.239 50.000 0.00 0.00 45.21 2.85
5469 8318 4.941713 ACTGGATTGACTCCTTCTAGTCT 58.058 43.478 5.68 0.00 45.12 3.24
5473 8322 2.491675 TGACTCCTTCTAGTCTGCGA 57.508 50.000 5.68 0.00 45.12 5.10
5495 8344 1.025113 CAGGCGGTGAGTCTCTACGA 61.025 60.000 17.14 0.00 28.06 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 5.635280 GCCAATCCTCTTTAAAGAAAACTGC 59.365 40.000 18.25 12.65 34.03 4.40
24 25 6.016192 CAGTAGATAGACGCCAATCCTCTTTA 60.016 42.308 0.00 0.00 0.00 1.85
168 170 3.668447 TCAAAGCACAAACCTTGCAAAA 58.332 36.364 0.00 0.00 42.83 2.44
179 181 1.704628 TCCCTCTGGATCAAAGCACAA 59.295 47.619 0.00 0.00 35.03 3.33
274 276 6.369615 CCAGTGAAAAATGAGGCCTAAAAATG 59.630 38.462 4.42 0.00 0.00 2.32
337 2944 5.047731 ACTGCCTAGCCTGAAAATTTCTTTC 60.048 40.000 7.29 0.00 0.00 2.62
345 2952 4.383770 GGTACATACTGCCTAGCCTGAAAA 60.384 45.833 0.00 0.00 0.00 2.29
346 2953 3.134081 GGTACATACTGCCTAGCCTGAAA 59.866 47.826 0.00 0.00 0.00 2.69
420 3031 0.606401 ATCCAAGCTCACAACACCCG 60.606 55.000 0.00 0.00 0.00 5.28
521 3137 4.410228 CCTAAGAATGAGATCAAGGTGGGA 59.590 45.833 0.00 0.00 0.00 4.37
526 3142 4.102210 TCCTGCCTAAGAATGAGATCAAGG 59.898 45.833 0.00 0.00 0.00 3.61
530 3146 3.324556 AGCTCCTGCCTAAGAATGAGATC 59.675 47.826 0.00 0.00 40.80 2.75
570 3186 6.748333 TTAGCTCCAATCTGAGAACAATTG 57.252 37.500 3.24 3.24 34.11 2.32
598 3214 8.645814 ATTCTGCATGATCAATTATATGTGGT 57.354 30.769 0.00 0.00 0.00 4.16
604 3220 9.752961 CCACAAAATTCTGCATGATCAATTATA 57.247 29.630 0.00 0.00 0.00 0.98
633 3249 4.320494 CCAACAGACAACTAAATCACCTGC 60.320 45.833 0.00 0.00 0.00 4.85
640 3256 6.377146 AGAAACACACCAACAGACAACTAAAT 59.623 34.615 0.00 0.00 0.00 1.40
654 3272 6.915300 CGAAAATTGATAACAGAAACACACCA 59.085 34.615 0.00 0.00 0.00 4.17
689 3307 4.135306 ACAGACATGATTGATCATCTGGC 58.865 43.478 20.39 9.71 45.23 4.85
703 3321 5.291971 TGATATCCGATGTGAACAGACATG 58.708 41.667 0.00 0.00 36.67 3.21
744 3362 4.216042 TGTGACAACCTCATGCAATTGTAG 59.784 41.667 7.40 0.31 35.47 2.74
745 3363 4.023279 GTGTGACAACCTCATGCAATTGTA 60.023 41.667 7.40 2.30 35.47 2.41
746 3364 2.957680 TGTGACAACCTCATGCAATTGT 59.042 40.909 7.40 7.70 37.97 2.71
747 3365 3.243468 TGTGTGACAACCTCATGCAATTG 60.243 43.478 0.00 0.00 0.00 2.32
758 3376 2.425312 TCATTTGTGGTGTGTGACAACC 59.575 45.455 9.15 9.15 34.14 3.77
884 3502 1.153449 CGGGTGCCACATGTATCGT 60.153 57.895 0.00 0.00 0.00 3.73
885 3503 2.534019 GCGGGTGCCACATGTATCG 61.534 63.158 0.00 0.00 33.98 2.92
1007 3628 2.510918 TCGATCAGCAGCAGCAGC 60.511 61.111 3.17 0.46 45.49 5.25
1043 3664 2.906897 AAGCTGTTGTGCCACCGG 60.907 61.111 0.00 0.00 0.00 5.28
1045 3666 2.564721 GGGAAGCTGTTGTGCCACC 61.565 63.158 0.00 0.00 0.00 4.61
1094 3715 2.922503 TTGGTGGAGCTGCCGAGA 60.923 61.111 1.53 0.00 40.66 4.04
1226 3847 3.674997 TGCTGAATGGTCTTTGGAGTAC 58.325 45.455 0.00 0.00 0.00 2.73
1308 3929 8.792633 TGGAATCAAACCAAGAAAGTTGTATAG 58.207 33.333 0.00 0.00 34.25 1.31
1309 3930 8.698973 TGGAATCAAACCAAGAAAGTTGTATA 57.301 30.769 0.00 0.00 34.25 1.47
1310 3931 7.595819 TGGAATCAAACCAAGAAAGTTGTAT 57.404 32.000 0.00 0.00 34.25 2.29
1311 3932 7.595819 ATGGAATCAAACCAAGAAAGTTGTA 57.404 32.000 0.00 0.00 40.93 2.41
1312 3933 5.930837 TGGAATCAAACCAAGAAAGTTGT 57.069 34.783 0.00 0.00 34.25 3.32
1313 3934 7.306749 CGAAATGGAATCAAACCAAGAAAGTTG 60.307 37.037 0.00 0.00 40.93 3.16
1314 3935 6.701400 CGAAATGGAATCAAACCAAGAAAGTT 59.299 34.615 0.00 0.00 40.93 2.66
1315 3936 6.215845 CGAAATGGAATCAAACCAAGAAAGT 58.784 36.000 0.00 0.00 40.93 2.66
1316 3937 5.119125 GCGAAATGGAATCAAACCAAGAAAG 59.881 40.000 0.00 0.00 40.93 2.62
1354 3975 0.961019 TGCCAATCTGTCAAGCCAAC 59.039 50.000 0.00 0.00 0.00 3.77
1358 3979 1.509923 GGCTGCCAATCTGTCAAGC 59.490 57.895 15.17 0.00 0.00 4.01
1359 3980 1.651240 CCGGCTGCCAATCTGTCAAG 61.651 60.000 20.29 0.00 0.00 3.02
1360 3981 1.675310 CCGGCTGCCAATCTGTCAA 60.675 57.895 20.29 0.00 0.00 3.18
1361 3982 1.549243 TACCGGCTGCCAATCTGTCA 61.549 55.000 20.29 0.00 0.00 3.58
1374 4001 2.757099 TCCTCCGAACCTACCGGC 60.757 66.667 0.00 0.00 46.10 6.13
1791 4422 0.318275 GTCCACGAGATCGAGATGGC 60.318 60.000 9.58 0.17 43.02 4.40
1799 4430 7.134815 CCATGAATTATTTTGTCCACGAGATC 58.865 38.462 0.00 0.00 0.00 2.75
1823 4454 4.408821 TGAGCGGCATGGGTCACC 62.409 66.667 1.45 0.00 39.33 4.02
1824 4455 2.821366 CTGAGCGGCATGGGTCAC 60.821 66.667 1.45 0.00 39.33 3.67
1825 4456 4.100084 CCTGAGCGGCATGGGTCA 62.100 66.667 1.45 0.00 41.72 4.02
1826 4457 4.101448 ACCTGAGCGGCATGGGTC 62.101 66.667 1.45 0.00 35.61 4.46
1827 4458 4.101448 GACCTGAGCGGCATGGGT 62.101 66.667 1.45 6.62 35.61 4.51
1828 4459 4.864334 GGACCTGAGCGGCATGGG 62.864 72.222 1.45 3.10 35.61 4.00
1829 4460 4.864334 GGGACCTGAGCGGCATGG 62.864 72.222 1.45 3.48 35.61 3.66
1910 4551 5.235186 CACAATAGGAATGTCATCTTCGTCC 59.765 44.000 0.00 0.00 0.00 4.79
1916 4557 4.712476 GGAGCACAATAGGAATGTCATCT 58.288 43.478 0.00 0.00 0.00 2.90
2040 4681 7.402640 GTTCTTACTTGAAACTGTTCACTGAG 58.597 38.462 0.00 0.00 43.52 3.35
2080 4721 6.721318 ACTATGCAGGTGAAGAGGAAAATTA 58.279 36.000 0.00 0.00 0.00 1.40
2142 4783 7.125811 ACTTCATGGATACTTTTAGGAGCTGTA 59.874 37.037 0.00 0.00 37.61 2.74
2217 4861 7.923878 GGGTAGTTGTGCTTCTTAAAAATTCAA 59.076 33.333 0.00 0.00 0.00 2.69
2242 4886 6.398095 TGATGACTAGATGTTACAACACTGG 58.602 40.000 0.00 2.58 42.51 4.00
2620 5327 2.750948 GAACTACACAACTCGGCTCAA 58.249 47.619 0.00 0.00 0.00 3.02
2731 5488 2.624838 CCACAAAGAGAAACATGCCTGT 59.375 45.455 0.00 0.00 37.12 4.00
2842 5601 9.275398 ACAAAATGCATTCAGTTCAAACATATT 57.725 25.926 13.38 0.00 29.30 1.28
2843 5602 8.714179 CACAAAATGCATTCAGTTCAAACATAT 58.286 29.630 13.38 0.00 29.30 1.78
2844 5603 7.924947 TCACAAAATGCATTCAGTTCAAACATA 59.075 29.630 13.38 0.00 29.30 2.29
2845 5604 6.762187 TCACAAAATGCATTCAGTTCAAACAT 59.238 30.769 13.38 0.00 29.30 2.71
2856 5615 9.241317 CTGATAACCTATTCACAAAATGCATTC 57.759 33.333 13.38 0.00 0.00 2.67
3172 5936 6.484643 ACATCCGTATGTAGTCTGTACGTATT 59.515 38.462 0.00 0.00 44.66 1.89
3174 5938 5.359756 ACATCCGTATGTAGTCTGTACGTA 58.640 41.667 0.00 0.00 44.66 3.57
3175 5939 4.194640 ACATCCGTATGTAGTCTGTACGT 58.805 43.478 0.00 0.00 44.66 3.57
3176 5940 4.808077 ACATCCGTATGTAGTCTGTACG 57.192 45.455 0.00 7.09 44.66 3.67
3218 5982 4.999950 ACGAAGCAAAATGAGTGAATCTCT 59.000 37.500 0.00 0.00 43.13 3.10
3219 5983 5.288543 ACGAAGCAAAATGAGTGAATCTC 57.711 39.130 0.00 0.00 43.03 2.75
3230 5994 9.035607 CAATAGAGACTACATACGAAGCAAAAT 57.964 33.333 0.00 0.00 0.00 1.82
3234 5998 6.937436 TCAATAGAGACTACATACGAAGCA 57.063 37.500 0.00 0.00 0.00 3.91
3238 6002 9.562408 AGAGATTTCAATAGAGACTACATACGA 57.438 33.333 0.00 0.00 0.00 3.43
3434 6208 8.907885 GCATAGGTTGATCTTATTTTCTCCTTT 58.092 33.333 0.00 0.00 0.00 3.11
3435 6209 8.277918 AGCATAGGTTGATCTTATTTTCTCCTT 58.722 33.333 0.00 0.00 0.00 3.36
3436 6210 7.810260 AGCATAGGTTGATCTTATTTTCTCCT 58.190 34.615 0.00 0.00 0.00 3.69
3437 6211 9.561069 TTAGCATAGGTTGATCTTATTTTCTCC 57.439 33.333 0.00 0.00 0.00 3.71
3439 6213 9.905713 TGTTAGCATAGGTTGATCTTATTTTCT 57.094 29.630 0.00 0.00 0.00 2.52
3442 6216 9.686683 ACTTGTTAGCATAGGTTGATCTTATTT 57.313 29.630 0.00 0.00 0.00 1.40
3450 6224 9.542462 GTCATATTACTTGTTAGCATAGGTTGA 57.458 33.333 0.00 0.00 0.00 3.18
3451 6225 8.774586 GGTCATATTACTTGTTAGCATAGGTTG 58.225 37.037 0.00 0.00 0.00 3.77
3452 6226 7.656137 CGGTCATATTACTTGTTAGCATAGGTT 59.344 37.037 0.00 0.00 0.00 3.50
3453 6227 7.014905 TCGGTCATATTACTTGTTAGCATAGGT 59.985 37.037 0.00 0.00 0.00 3.08
3454 6228 7.375834 TCGGTCATATTACTTGTTAGCATAGG 58.624 38.462 0.00 0.00 0.00 2.57
3455 6229 8.297426 TCTCGGTCATATTACTTGTTAGCATAG 58.703 37.037 0.00 0.00 0.00 2.23
3456 6230 8.080417 GTCTCGGTCATATTACTTGTTAGCATA 58.920 37.037 0.00 0.00 0.00 3.14
3457 6231 6.924060 GTCTCGGTCATATTACTTGTTAGCAT 59.076 38.462 0.00 0.00 0.00 3.79
3458 6232 6.270815 GTCTCGGTCATATTACTTGTTAGCA 58.729 40.000 0.00 0.00 0.00 3.49
3459 6233 5.690857 GGTCTCGGTCATATTACTTGTTAGC 59.309 44.000 0.00 0.00 0.00 3.09
3460 6234 6.918569 CAGGTCTCGGTCATATTACTTGTTAG 59.081 42.308 0.00 0.00 0.00 2.34
3461 6235 6.379133 ACAGGTCTCGGTCATATTACTTGTTA 59.621 38.462 0.00 0.00 0.00 2.41
3462 6236 5.187186 ACAGGTCTCGGTCATATTACTTGTT 59.813 40.000 0.00 0.00 0.00 2.83
3463 6237 4.710375 ACAGGTCTCGGTCATATTACTTGT 59.290 41.667 0.00 0.00 0.00 3.16
3464 6238 5.263968 ACAGGTCTCGGTCATATTACTTG 57.736 43.478 0.00 0.00 0.00 3.16
3465 6239 5.301298 GGTACAGGTCTCGGTCATATTACTT 59.699 44.000 0.00 0.00 0.00 2.24
3513 6293 2.783828 ACCGATCGAGTTCATAGCTG 57.216 50.000 18.66 0.00 0.00 4.24
3574 6354 2.840651 ACACCCACCAAAAATGGTCAAA 59.159 40.909 0.00 0.00 40.85 2.69
3575 6355 2.169352 CACACCCACCAAAAATGGTCAA 59.831 45.455 0.00 0.00 40.85 3.18
3737 6517 2.945668 GTTTCTGCAGGCCGAAATAGAT 59.054 45.455 15.13 0.00 32.43 1.98
3748 6528 1.071471 ACTGACCGGTTTCTGCAGG 59.929 57.895 20.64 0.00 0.00 4.85
3787 6567 1.304509 GCTGCTGGAGCTCCAACTTC 61.305 60.000 34.30 22.69 46.97 3.01
3844 6624 4.999310 TCAGGACTCCTTCTCTCACTTTA 58.001 43.478 0.00 0.00 0.00 1.85
3910 6690 5.046014 GGATATAAGGAGACATGCATCACCT 60.046 44.000 0.00 0.00 40.99 4.00
3919 6699 3.874316 TGCTGGGGATATAAGGAGACAT 58.126 45.455 0.00 0.00 0.00 3.06
3966 6752 9.545105 GATGGATGCATGGAAAACAAAAATATA 57.455 29.630 2.46 0.00 0.00 0.86
3967 6753 8.047911 TGATGGATGCATGGAAAACAAAAATAT 58.952 29.630 2.46 0.00 0.00 1.28
3978 6765 1.449726 GCGCTGATGGATGCATGGAA 61.450 55.000 2.46 0.00 0.00 3.53
3995 6788 4.673534 AAATACCTTCCAAGTTTACGCG 57.326 40.909 3.53 3.53 0.00 6.01
4017 6810 3.730662 GCTCACACTTTGCTTCAAACGAA 60.731 43.478 0.00 0.00 0.00 3.85
4023 6816 1.311859 CTGGCTCACACTTTGCTTCA 58.688 50.000 0.00 0.00 0.00 3.02
4085 6878 0.175760 TGCTAACCTCACATCTCGCC 59.824 55.000 0.00 0.00 0.00 5.54
4188 6984 1.007964 CGAACCAACCGCATTTGCA 60.008 52.632 3.13 0.00 42.21 4.08
4265 7062 0.741915 GTGTGCCGTCCCTTTGAAAA 59.258 50.000 0.00 0.00 0.00 2.29
4447 7244 1.270550 CCCTGTTTTGCTGTCCATGTC 59.729 52.381 0.00 0.00 0.00 3.06
4461 7258 2.101640 AAAACATTGGCCTCCCTGTT 57.898 45.000 3.32 5.65 32.33 3.16
4462 7259 2.101640 AAAAACATTGGCCTCCCTGT 57.898 45.000 3.32 0.00 0.00 4.00
4498 7295 2.735237 CGAGGCCGAGGGAATACC 59.265 66.667 0.00 0.00 38.22 2.73
4499 7296 2.029221 GCGAGGCCGAGGGAATAC 59.971 66.667 0.00 0.00 38.22 1.89
4500 7297 3.602677 CGCGAGGCCGAGGGAATA 61.603 66.667 0.00 0.00 38.22 1.75
4512 7309 1.651987 TTTAAGAAGATGGCCGCGAG 58.348 50.000 8.23 0.00 0.00 5.03
4513 7310 2.006888 CTTTTAAGAAGATGGCCGCGA 58.993 47.619 8.23 0.00 0.00 5.87
4514 7311 1.737793 ACTTTTAAGAAGATGGCCGCG 59.262 47.619 0.00 0.00 0.00 6.46
4515 7312 2.732282 GCACTTTTAAGAAGATGGCCGC 60.732 50.000 0.00 0.00 0.00 6.53
4516 7313 2.159379 GGCACTTTTAAGAAGATGGCCG 60.159 50.000 0.00 0.00 0.00 6.13
4517 7314 2.825532 TGGCACTTTTAAGAAGATGGCC 59.174 45.455 0.00 0.00 39.29 5.36
4518 7315 4.519540 TTGGCACTTTTAAGAAGATGGC 57.480 40.909 0.00 9.81 0.00 4.40
4519 7316 6.271488 TGATTGGCACTTTTAAGAAGATGG 57.729 37.500 0.00 0.00 0.00 3.51
4520 7317 8.490355 GTTTTGATTGGCACTTTTAAGAAGATG 58.510 33.333 0.00 2.33 0.00 2.90
4521 7318 8.203485 TGTTTTGATTGGCACTTTTAAGAAGAT 58.797 29.630 0.00 0.00 0.00 2.40
4522 7319 7.551585 TGTTTTGATTGGCACTTTTAAGAAGA 58.448 30.769 0.00 0.00 0.00 2.87
4523 7320 7.769272 TGTTTTGATTGGCACTTTTAAGAAG 57.231 32.000 0.00 0.00 0.00 2.85
4524 7321 8.553459 TTTGTTTTGATTGGCACTTTTAAGAA 57.447 26.923 0.00 0.00 0.00 2.52
4525 7322 7.821846 ACTTTGTTTTGATTGGCACTTTTAAGA 59.178 29.630 0.00 0.00 0.00 2.10
4526 7323 7.973601 ACTTTGTTTTGATTGGCACTTTTAAG 58.026 30.769 0.00 0.00 0.00 1.85
4564 7361 2.156343 GTGCTCTTTCTGAGAACCGT 57.844 50.000 0.00 0.00 43.99 4.83
4568 7365 3.136443 TCCCTTTGTGCTCTTTCTGAGAA 59.864 43.478 0.00 0.00 45.39 2.87
4573 7370 3.864789 TTCTCCCTTTGTGCTCTTTCT 57.135 42.857 0.00 0.00 0.00 2.52
4602 7399 2.162608 TCATGTTTTTCGCCGGTTATGG 59.837 45.455 1.90 0.00 0.00 2.74
4603 7400 3.168193 GTCATGTTTTTCGCCGGTTATG 58.832 45.455 1.90 0.00 0.00 1.90
4604 7401 2.814919 TGTCATGTTTTTCGCCGGTTAT 59.185 40.909 1.90 0.00 0.00 1.89
4605 7402 2.219458 TGTCATGTTTTTCGCCGGTTA 58.781 42.857 1.90 0.00 0.00 2.85
4606 7403 1.025812 TGTCATGTTTTTCGCCGGTT 58.974 45.000 1.90 0.00 0.00 4.44
4607 7404 1.001815 CTTGTCATGTTTTTCGCCGGT 60.002 47.619 1.90 0.00 0.00 5.28
4608 7405 1.265635 TCTTGTCATGTTTTTCGCCGG 59.734 47.619 0.00 0.00 0.00 6.13
4609 7406 2.679355 TCTTGTCATGTTTTTCGCCG 57.321 45.000 0.00 0.00 0.00 6.46
4610 7407 4.359706 AGTTTCTTGTCATGTTTTTCGCC 58.640 39.130 0.00 0.00 0.00 5.54
4611 7408 4.441087 GGAGTTTCTTGTCATGTTTTTCGC 59.559 41.667 0.00 0.00 0.00 4.70
4612 7409 5.821204 AGGAGTTTCTTGTCATGTTTTTCG 58.179 37.500 0.00 0.00 0.00 3.46
4613 7410 8.023706 GGATAGGAGTTTCTTGTCATGTTTTTC 58.976 37.037 0.00 0.00 0.00 2.29
4614 7411 7.725844 AGGATAGGAGTTTCTTGTCATGTTTTT 59.274 33.333 0.00 0.00 0.00 1.94
4615 7412 7.234355 AGGATAGGAGTTTCTTGTCATGTTTT 58.766 34.615 0.00 0.00 0.00 2.43
4616 7413 6.784031 AGGATAGGAGTTTCTTGTCATGTTT 58.216 36.000 0.00 0.00 0.00 2.83
4617 7414 6.380079 AGGATAGGAGTTTCTTGTCATGTT 57.620 37.500 0.00 0.00 0.00 2.71
4618 7415 7.682787 ATAGGATAGGAGTTTCTTGTCATGT 57.317 36.000 0.00 0.00 0.00 3.21
4622 7419 9.495572 CCAATAATAGGATAGGAGTTTCTTGTC 57.504 37.037 0.00 0.00 0.00 3.18
4623 7420 9.225682 TCCAATAATAGGATAGGAGTTTCTTGT 57.774 33.333 0.00 0.00 0.00 3.16
4629 7426 9.398921 AGACATTCCAATAATAGGATAGGAGTT 57.601 33.333 0.00 0.00 34.56 3.01
4630 7427 8.980832 AGACATTCCAATAATAGGATAGGAGT 57.019 34.615 0.00 0.00 34.56 3.85
4631 7428 8.482128 GGAGACATTCCAATAATAGGATAGGAG 58.518 40.741 0.00 0.00 46.01 3.69
4632 7429 8.380742 GGAGACATTCCAATAATAGGATAGGA 57.619 38.462 0.00 0.00 46.01 2.94
4648 7445 4.299978 GGTACAATCGCTAGGAGACATTC 58.700 47.826 0.00 0.00 0.00 2.67
4649 7446 3.069729 GGGTACAATCGCTAGGAGACATT 59.930 47.826 0.00 0.00 0.00 2.71
4650 7447 2.628657 GGGTACAATCGCTAGGAGACAT 59.371 50.000 0.00 0.00 0.00 3.06
4651 7448 2.029623 GGGTACAATCGCTAGGAGACA 58.970 52.381 0.00 0.00 0.00 3.41
4652 7449 2.029623 TGGGTACAATCGCTAGGAGAC 58.970 52.381 0.00 0.00 0.00 3.36
4653 7450 2.447408 TGGGTACAATCGCTAGGAGA 57.553 50.000 0.00 0.00 0.00 3.71
4654 7451 3.753294 ATTGGGTACAATCGCTAGGAG 57.247 47.619 0.00 0.00 43.67 3.69
4655 7452 4.202284 GGTTATTGGGTACAATCGCTAGGA 60.202 45.833 0.00 0.00 43.67 2.94
4656 7453 4.062991 GGTTATTGGGTACAATCGCTAGG 58.937 47.826 0.00 0.00 43.67 3.02
4657 7454 4.699637 TGGTTATTGGGTACAATCGCTAG 58.300 43.478 0.00 0.00 43.67 3.42
4658 7455 4.757019 TGGTTATTGGGTACAATCGCTA 57.243 40.909 0.00 0.00 43.67 4.26
4659 7456 3.637911 TGGTTATTGGGTACAATCGCT 57.362 42.857 0.00 0.00 43.67 4.93
4660 7457 4.705337 TTTGGTTATTGGGTACAATCGC 57.295 40.909 0.00 0.00 43.67 4.58
4661 7458 5.099575 GCTTTTGGTTATTGGGTACAATCG 58.900 41.667 0.00 0.00 43.67 3.34
4662 7459 6.280855 AGCTTTTGGTTATTGGGTACAATC 57.719 37.500 0.00 0.00 43.67 2.67
4664 7461 4.525100 GGAGCTTTTGGTTATTGGGTACAA 59.475 41.667 0.00 0.00 41.59 2.41
4665 7462 4.083565 GGAGCTTTTGGTTATTGGGTACA 58.916 43.478 0.00 0.00 0.00 2.90
4666 7463 3.446161 GGGAGCTTTTGGTTATTGGGTAC 59.554 47.826 0.00 0.00 0.00 3.34
4667 7464 3.335484 AGGGAGCTTTTGGTTATTGGGTA 59.665 43.478 0.00 0.00 0.00 3.69
4668 7465 2.111792 AGGGAGCTTTTGGTTATTGGGT 59.888 45.455 0.00 0.00 0.00 4.51
4669 7466 2.820178 AGGGAGCTTTTGGTTATTGGG 58.180 47.619 0.00 0.00 0.00 4.12
4670 7467 4.855340 TCTAGGGAGCTTTTGGTTATTGG 58.145 43.478 0.00 0.00 0.00 3.16
4671 7468 6.659242 TCTTTCTAGGGAGCTTTTGGTTATTG 59.341 38.462 0.00 0.00 0.00 1.90
4672 7469 6.790319 TCTTTCTAGGGAGCTTTTGGTTATT 58.210 36.000 0.00 0.00 0.00 1.40
4673 7470 6.388619 TCTTTCTAGGGAGCTTTTGGTTAT 57.611 37.500 0.00 0.00 0.00 1.89
4674 7471 5.805728 CTCTTTCTAGGGAGCTTTTGGTTA 58.194 41.667 0.00 0.00 0.00 2.85
4675 7472 4.657013 CTCTTTCTAGGGAGCTTTTGGTT 58.343 43.478 0.00 0.00 0.00 3.67
4676 7473 4.293662 CTCTTTCTAGGGAGCTTTTGGT 57.706 45.455 0.00 0.00 0.00 3.67
4684 7481 3.604582 CCTTTGTGCTCTTTCTAGGGAG 58.395 50.000 0.00 0.00 0.00 4.30
4685 7482 2.305927 CCCTTTGTGCTCTTTCTAGGGA 59.694 50.000 0.00 0.00 42.82 4.20
4686 7483 2.305927 TCCCTTTGTGCTCTTTCTAGGG 59.694 50.000 0.00 0.00 41.79 3.53
4687 7484 3.261897 TCTCCCTTTGTGCTCTTTCTAGG 59.738 47.826 0.00 0.00 0.00 3.02
4688 7485 4.543590 TCTCCCTTTGTGCTCTTTCTAG 57.456 45.455 0.00 0.00 0.00 2.43
4689 7486 4.974645 TTCTCCCTTTGTGCTCTTTCTA 57.025 40.909 0.00 0.00 0.00 2.10
4690 7487 3.864789 TTCTCCCTTTGTGCTCTTTCT 57.135 42.857 0.00 0.00 0.00 2.52
4691 7488 4.918810 TTTTCTCCCTTTGTGCTCTTTC 57.081 40.909 0.00 0.00 0.00 2.62
4719 7516 1.127701 CATGTTTTTCGCCGGTTGTG 58.872 50.000 1.90 0.00 0.00 3.33
4724 7521 1.265635 TCTTGTCATGTTTTTCGCCGG 59.734 47.619 0.00 0.00 0.00 6.13
4729 7526 9.399403 GGATAGAAGTTTCTTGTCATGTTTTTC 57.601 33.333 0.00 0.00 38.70 2.29
4747 7551 9.413048 GGAGACGTTTCAATAATAGGATAGAAG 57.587 37.037 8.50 0.00 0.00 2.85
4749 7553 8.707796 AGGAGACGTTTCAATAATAGGATAGA 57.292 34.615 8.50 0.00 0.00 1.98
4754 7558 9.712305 ATCATTAGGAGACGTTTCAATAATAGG 57.288 33.333 8.50 2.56 0.00 2.57
4764 7568 3.689649 GGTGCAATCATTAGGAGACGTTT 59.310 43.478 0.00 0.00 0.00 3.60
4766 7570 2.420129 GGGTGCAATCATTAGGAGACGT 60.420 50.000 0.00 0.00 0.00 4.34
4771 7575 4.892934 GGTTATTGGGTGCAATCATTAGGA 59.107 41.667 0.00 0.00 0.00 2.94
4772 7576 4.648762 TGGTTATTGGGTGCAATCATTAGG 59.351 41.667 0.00 0.00 0.00 2.69
4779 7618 3.327464 AGCTTTTGGTTATTGGGTGCAAT 59.673 39.130 0.00 0.00 0.00 3.56
4786 7625 4.806640 ACATGGAGCTTTTGGTTATTGG 57.193 40.909 0.00 0.00 0.00 3.16
4817 7656 0.108585 GGCCTCACTGTTGGAAGACA 59.891 55.000 0.00 0.00 0.00 3.41
4822 7661 1.296392 CATCGGCCTCACTGTTGGA 59.704 57.895 0.00 0.00 0.00 3.53
4829 7668 1.884926 GCAGCTACATCGGCCTCAC 60.885 63.158 0.00 0.00 0.00 3.51
4913 7755 5.215252 TGAGGGACTATTGCTATAGTTGC 57.785 43.478 19.62 9.61 45.43 4.17
4942 7784 3.623510 GCTATAGTTGCTTTGACTCCACC 59.376 47.826 0.84 0.00 0.00 4.61
4943 7785 4.253685 TGCTATAGTTGCTTTGACTCCAC 58.746 43.478 0.84 0.00 0.00 4.02
4944 7786 4.551702 TGCTATAGTTGCTTTGACTCCA 57.448 40.909 0.84 0.00 0.00 3.86
4945 7787 6.763610 ACTATTGCTATAGTTGCTTTGACTCC 59.236 38.462 14.09 0.00 43.48 3.85
4946 7788 7.042389 GGACTATTGCTATAGTTGCTTTGACTC 60.042 40.741 19.62 5.36 45.43 3.36
4947 7789 6.763610 GGACTATTGCTATAGTTGCTTTGACT 59.236 38.462 19.62 0.00 45.43 3.41
4948 7790 6.017852 GGGACTATTGCTATAGTTGCTTTGAC 60.018 42.308 19.62 6.56 45.43 3.18
4949 7791 6.055588 GGGACTATTGCTATAGTTGCTTTGA 58.944 40.000 19.62 0.00 45.43 2.69
4950 7792 6.058183 AGGGACTATTGCTATAGTTGCTTTG 58.942 40.000 19.62 0.00 45.43 2.77
4951 7793 6.126768 TGAGGGACTATTGCTATAGTTGCTTT 60.127 38.462 19.62 6.80 45.43 3.51
4952 7794 5.366768 TGAGGGACTATTGCTATAGTTGCTT 59.633 40.000 19.62 7.62 45.43 3.91
4953 7795 4.901849 TGAGGGACTATTGCTATAGTTGCT 59.098 41.667 19.62 0.00 45.43 3.91
4954 7796 5.215252 TGAGGGACTATTGCTATAGTTGC 57.785 43.478 19.62 9.61 45.43 4.17
4955 7797 7.012421 GGTTTTGAGGGACTATTGCTATAGTTG 59.988 40.741 19.62 0.00 45.43 3.16
4956 7798 7.054751 GGTTTTGAGGGACTATTGCTATAGTT 58.945 38.462 19.62 6.50 45.43 2.24
4958 7800 5.696724 CGGTTTTGAGGGACTATTGCTATAG 59.303 44.000 12.83 12.83 41.55 1.31
4959 7801 5.454187 CCGGTTTTGAGGGACTATTGCTATA 60.454 44.000 0.00 0.00 41.55 1.31
4960 7802 4.451900 CGGTTTTGAGGGACTATTGCTAT 58.548 43.478 0.00 0.00 41.55 2.97
4961 7803 3.370103 CCGGTTTTGAGGGACTATTGCTA 60.370 47.826 0.00 0.00 41.55 3.49
4962 7804 2.618045 CCGGTTTTGAGGGACTATTGCT 60.618 50.000 0.00 0.00 41.55 3.91
4963 7805 1.743394 CCGGTTTTGAGGGACTATTGC 59.257 52.381 0.00 0.00 41.55 3.56
4972 7814 0.694196 TCCCTTACCCGGTTTTGAGG 59.306 55.000 0.00 0.00 0.00 3.86
4973 7815 1.350019 ACTCCCTTACCCGGTTTTGAG 59.650 52.381 0.00 0.97 0.00 3.02
4974 7816 1.072648 CACTCCCTTACCCGGTTTTGA 59.927 52.381 0.00 0.00 0.00 2.69
4975 7817 1.530323 CACTCCCTTACCCGGTTTTG 58.470 55.000 0.00 0.00 0.00 2.44
4976 7818 0.251033 GCACTCCCTTACCCGGTTTT 60.251 55.000 0.00 0.00 0.00 2.43
4977 7819 1.377612 GCACTCCCTTACCCGGTTT 59.622 57.895 0.00 0.00 0.00 3.27
4978 7820 1.420532 TTGCACTCCCTTACCCGGTT 61.421 55.000 0.00 0.00 0.00 4.44
4979 7821 1.420532 TTTGCACTCCCTTACCCGGT 61.421 55.000 0.00 0.00 0.00 5.28
4980 7822 0.250989 TTTTGCACTCCCTTACCCGG 60.251 55.000 0.00 0.00 0.00 5.73
4981 7823 1.834188 ATTTTGCACTCCCTTACCCG 58.166 50.000 0.00 0.00 0.00 5.28
4982 7824 2.163613 CGAATTTTGCACTCCCTTACCC 59.836 50.000 0.00 0.00 0.00 3.69
4991 7833 5.167845 ACACTTGAAAACGAATTTTGCACT 58.832 33.333 0.00 0.00 38.17 4.40
4994 7836 7.424167 GGTTTAACACTTGAAAACGAATTTTGC 59.576 33.333 0.00 0.00 38.17 3.68
5012 7854 1.350071 TGGCTAGGTCCGGTTTAACA 58.650 50.000 0.00 0.00 0.00 2.41
5052 7894 7.510407 AGAAGCTAGGAGTAAAAGTTTCAACT 58.490 34.615 3.82 3.82 42.04 3.16
5053 7895 7.731882 AGAAGCTAGGAGTAAAAGTTTCAAC 57.268 36.000 0.00 0.00 34.16 3.18
5055 7897 7.384477 GGTAGAAGCTAGGAGTAAAAGTTTCA 58.616 38.462 0.00 0.00 34.16 2.69
5087 7929 6.903534 GGAAGGGGTGATATATCCTGAGATTA 59.096 42.308 10.25 0.00 33.67 1.75
5154 7996 1.152881 GGGAGGGCAAGTGCTATGG 60.153 63.158 2.85 0.00 41.70 2.74
5215 8057 4.764050 TGGCTAAATCCTACCATTTCGA 57.236 40.909 0.00 0.00 0.00 3.71
5224 8066 1.358152 CCCCCGATGGCTAAATCCTA 58.642 55.000 0.00 0.00 0.00 2.94
5236 8078 3.789290 GCGGTGGTAACCCCCGAT 61.789 66.667 17.14 0.00 44.42 4.18
5239 8081 2.206182 AATCAGCGGTGGTAACCCCC 62.206 60.000 15.67 0.00 44.42 5.40
5241 8083 1.087771 CGAATCAGCGGTGGTAACCC 61.088 60.000 15.67 0.00 44.42 4.11
5291 8133 3.553533 GATCGCTTGCATGTGCGGTAC 62.554 57.143 22.49 13.53 46.51 3.34
5292 8134 1.428370 GATCGCTTGCATGTGCGGTA 61.428 55.000 22.49 10.04 46.51 4.02
5296 8138 0.027716 CTCAGATCGCTTGCATGTGC 59.972 55.000 8.22 0.00 42.50 4.57
5297 8139 0.027716 GCTCAGATCGCTTGCATGTG 59.972 55.000 6.81 6.81 0.00 3.21
5298 8140 0.392060 TGCTCAGATCGCTTGCATGT 60.392 50.000 1.14 0.00 0.00 3.21
5299 8141 0.945099 ATGCTCAGATCGCTTGCATG 59.055 50.000 14.35 0.00 39.07 4.06
5300 8142 0.945099 CATGCTCAGATCGCTTGCAT 59.055 50.000 10.95 10.95 40.29 3.96
5301 8143 2.390427 CATGCTCAGATCGCTTGCA 58.610 52.632 7.83 7.83 36.10 4.08
5305 8147 2.279985 CCGCATGCTCAGATCGCT 60.280 61.111 17.13 0.00 0.00 4.93
5382 8224 3.564027 GCGGCCACATGTCGTAGC 61.564 66.667 2.24 0.00 0.00 3.58
5399 8247 1.705002 TACGAATCCCATGCCCCCAG 61.705 60.000 0.00 0.00 0.00 4.45
5400 8248 1.282653 TTACGAATCCCATGCCCCCA 61.283 55.000 0.00 0.00 0.00 4.96
5403 8251 4.022329 CCTTTATTTACGAATCCCATGCCC 60.022 45.833 0.00 0.00 0.00 5.36
5412 8260 6.091713 CGGTGTCTTGTCCTTTATTTACGAAT 59.908 38.462 0.00 0.00 0.00 3.34
5415 8263 4.092383 CCGGTGTCTTGTCCTTTATTTACG 59.908 45.833 0.00 0.00 0.00 3.18
5473 8322 0.612174 TAGAGACTCACCGCCTGCTT 60.612 55.000 5.02 0.00 0.00 3.91
5495 8344 0.389948 GTTGATCTTCGCCCGACTGT 60.390 55.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.