Multiple sequence alignment - TraesCS3A01G214400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G214400 chr3A 100.000 2276 0 0 1 2276 389777935 389780210 0.000000e+00 4204.0
1 TraesCS3A01G214400 chr3A 89.501 981 84 11 1050 2019 438421040 438420068 0.000000e+00 1223.0
2 TraesCS3A01G214400 chr3A 89.128 975 92 9 1064 2034 380677675 380676711 0.000000e+00 1201.0
3 TraesCS3A01G214400 chr3A 88.528 985 100 11 1050 2031 438450506 438449532 0.000000e+00 1181.0
4 TraesCS3A01G214400 chr3A 87.954 963 99 8 1067 2019 380667811 380666856 0.000000e+00 1120.0
5 TraesCS3A01G214400 chr3A 91.310 725 50 5 1303 2021 389759277 389759994 0.000000e+00 977.0
6 TraesCS3A01G214400 chr3A 86.260 786 70 16 523 1307 389729086 389729834 0.000000e+00 819.0
7 TraesCS3A01G214400 chr3A 86.207 435 38 11 1 414 389728649 389729082 3.450000e-123 451.0
8 TraesCS3A01G214400 chr1A 90.823 1155 90 10 783 1933 499582911 499581769 0.000000e+00 1531.0
9 TraesCS3A01G214400 chr1A 93.385 257 17 0 2019 2275 316580159 316579903 4.590000e-102 381.0
10 TraesCS3A01G214400 chr1A 84.343 198 27 4 4 198 59458785 59458589 8.300000e-45 191.0
11 TraesCS3A01G214400 chr1A 80.335 239 41 6 4 240 401018245 401018479 2.320000e-40 176.0
12 TraesCS3A01G214400 chr1A 79.681 251 44 7 4 251 224062239 224061993 8.360000e-40 174.0
13 TraesCS3A01G214400 chr5D 88.125 1120 113 16 920 2031 41211013 41212120 0.000000e+00 1314.0
14 TraesCS3A01G214400 chr5D 87.790 1122 117 17 918 2031 41219303 41220412 0.000000e+00 1295.0
15 TraesCS3A01G214400 chr5D 95.082 244 12 0 2032 2275 202577442 202577199 3.550000e-103 385.0
16 TraesCS3A01G214400 chr5D 86.219 283 29 6 302 578 41218668 41218946 4.750000e-77 298.0
17 TraesCS3A01G214400 chr5D 80.488 287 46 7 25 307 170989611 170989331 6.370000e-51 211.0
18 TraesCS3A01G214400 chr5D 79.233 313 56 5 1 310 431661962 431662268 2.290000e-50 209.0
19 TraesCS3A01G214400 chr5D 78.457 311 57 6 4 310 433734964 433734660 6.410000e-46 195.0
20 TraesCS3A01G214400 chr5D 78.275 313 59 5 1 310 431653926 431654232 2.310000e-45 193.0
21 TraesCS3A01G214400 chr5D 78.275 313 59 5 1 310 513132356 513132662 2.310000e-45 193.0
22 TraesCS3A01G214400 chr5A 88.957 978 98 7 1050 2024 379909026 379908056 0.000000e+00 1199.0
23 TraesCS3A01G214400 chr7D 95.455 242 11 0 2032 2273 507650096 507649855 9.860000e-104 387.0
24 TraesCS3A01G214400 chr7D 78.896 308 56 6 6 310 437719582 437719281 1.380000e-47 200.0
25 TraesCS3A01G214400 chr2D 95.455 242 11 0 2032 2273 198299352 198299111 9.860000e-104 387.0
26 TraesCS3A01G214400 chr2D 95.455 242 11 0 2032 2273 489344134 489343893 9.860000e-104 387.0
27 TraesCS3A01G214400 chr2D 80.192 313 51 7 1 308 368073967 368074273 8.180000e-55 224.0
28 TraesCS3A01G214400 chr2D 81.413 269 44 6 41 307 53357425 53357689 4.920000e-52 215.0
29 TraesCS3A01G214400 chr2D 78.914 313 55 8 1 308 368082137 368082443 3.830000e-48 202.0
30 TraesCS3A01G214400 chr6D 94.071 253 15 0 2023 2275 358589146 358589398 3.550000e-103 385.0
31 TraesCS3A01G214400 chr6D 80.000 315 48 11 1 307 270478837 270479144 3.810000e-53 219.0
32 TraesCS3A01G214400 chr6D 85.987 157 21 1 4 160 112904309 112904154 1.400000e-37 167.0
33 TraesCS3A01G214400 chr3D 95.082 244 12 0 2032 2275 217187837 217187594 3.550000e-103 385.0
34 TraesCS3A01G214400 chr3D 88.421 285 26 4 1736 2019 52033077 52033355 1.010000e-88 337.0
35 TraesCS3A01G214400 chr3D 86.242 298 31 6 1736 2031 121214056 121213767 4.720000e-82 315.0
36 TraesCS3A01G214400 chr3D 85.211 142 15 6 1444 1581 169943753 169943614 8.480000e-30 141.0
37 TraesCS3A01G214400 chr1D 95.082 244 12 0 2032 2275 196432556 196432313 3.550000e-103 385.0
38 TraesCS3A01G214400 chr1D 95.082 244 12 0 2032 2275 352095492 352095249 3.550000e-103 385.0
39 TraesCS3A01G214400 chr1D 83.838 297 42 4 1736 2031 430528552 430528843 6.190000e-71 278.0
40 TraesCS3A01G214400 chr1D 87.283 173 20 2 4 175 139423006 139422835 1.780000e-46 196.0
41 TraesCS3A01G214400 chr1D 78.182 330 52 18 4 323 443161439 443161120 2.310000e-45 193.0
42 TraesCS3A01G214400 chr1D 82.990 194 29 3 4 197 41036840 41036651 3.010000e-39 172.0
43 TraesCS3A01G214400 chr4D 87.000 300 31 4 1736 2033 344356717 344357010 4.690000e-87 331.0
44 TraesCS3A01G214400 chr4D 83.838 297 42 4 1736 2031 453451461 453451752 6.190000e-71 278.0
45 TraesCS3A01G214400 chr4D 79.233 313 56 5 1 310 372736591 372736897 2.290000e-50 209.0
46 TraesCS3A01G214400 chr4D 79.288 309 54 6 4 308 211771125 211770823 8.240000e-50 207.0
47 TraesCS3A01G214400 chr4D 78.710 310 55 7 4 308 64257391 64257088 1.780000e-46 196.0
48 TraesCS3A01G214400 chr4D 82.018 228 34 4 1 225 301335633 301335856 1.070000e-43 187.0
49 TraesCS3A01G214400 chr4D 82.828 198 34 0 1 198 213370925 213371122 6.460000e-41 178.0
50 TraesCS3A01G214400 chr4D 83.784 185 28 2 4 187 211762990 211762807 8.360000e-40 174.0
51 TraesCS3A01G214400 chr4D 83.523 176 26 3 4 179 35452182 35452010 6.510000e-36 161.0
52 TraesCS3A01G214400 chr4D 81.818 187 26 8 4 187 56671153 56670972 1.410000e-32 150.0
53 TraesCS3A01G214400 chr4D 80.645 186 31 5 1 184 384840970 384841152 3.050000e-29 139.0
54 TraesCS3A01G214400 chr1B 86.139 303 32 6 1725 2024 444960377 444960672 3.650000e-83 318.0
55 TraesCS3A01G214400 chr4B 84.950 299 34 8 1736 2031 443575645 443575355 2.210000e-75 292.0
56 TraesCS3A01G214400 chr4B 84.659 176 26 1 1 176 176127528 176127702 8.360000e-40 174.0
57 TraesCS3A01G214400 chr4B 86.335 161 19 3 38 197 622566824 622566666 3.010000e-39 172.0
58 TraesCS3A01G214400 chr6B 82.836 268 41 5 1 267 244844594 244844857 3.780000e-58 235.0
59 TraesCS3A01G214400 chr7B 82.463 268 41 5 42 308 406990564 406990302 1.760000e-56 230.0
60 TraesCS3A01G214400 chr3B 79.936 314 57 6 4 314 571617793 571618103 2.270000e-55 226.0
61 TraesCS3A01G214400 chr2B 81.272 283 47 5 4 283 562768219 562767940 8.180000e-55 224.0
62 TraesCS3A01G214400 chr5B 78.981 314 55 7 1 310 522290191 522290497 1.070000e-48 204.0
63 TraesCS3A01G214400 chr5B 78.594 313 58 5 1 310 522298277 522298583 4.960000e-47 198.0
64 TraesCS3A01G214400 chr6A 82.547 212 30 7 41 248 306294433 306294225 1.800000e-41 180.0
65 TraesCS3A01G214400 chr6A 82.075 212 31 7 41 248 306230724 306230516 8.360000e-40 174.0
66 TraesCS3A01G214400 chr6A 90.667 75 5 2 1403 1475 547190517 547190591 5.170000e-17 99.0
67 TraesCS3A01G214400 chrUn 81.879 149 25 2 1 149 221137716 221137862 8.540000e-25 124.0
68 TraesCS3A01G214400 chrUn 80.000 155 30 1 4 158 10403094 10402941 1.850000e-21 113.0
69 TraesCS3A01G214400 chrUn 75.686 255 47 14 1 248 201023782 201024028 1.850000e-21 113.0
70 TraesCS3A01G214400 chrUn 79.747 158 31 1 1 158 232647595 232647751 1.850000e-21 113.0
71 TraesCS3A01G214400 chrUn 80.000 155 30 1 4 158 304199211 304199058 1.850000e-21 113.0
72 TraesCS3A01G214400 chrUn 80.000 155 30 1 4 158 304444837 304444684 1.850000e-21 113.0
73 TraesCS3A01G214400 chrUn 80.132 151 28 2 1 150 372905527 372905676 6.650000e-21 111.0
74 TraesCS3A01G214400 chrUn 80.132 151 28 2 1 150 441839736 441839885 6.650000e-21 111.0
75 TraesCS3A01G214400 chrUn 80.132 151 28 2 1 150 444369710 444369859 6.650000e-21 111.0
76 TraesCS3A01G214400 chrUn 75.701 214 40 9 1 206 398212501 398212710 1.860000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G214400 chr3A 389777935 389780210 2275 False 4204.0 4204 100.0000 1 2276 1 chr3A.!!$F2 2275
1 TraesCS3A01G214400 chr3A 438420068 438421040 972 True 1223.0 1223 89.5010 1050 2019 1 chr3A.!!$R3 969
2 TraesCS3A01G214400 chr3A 380676711 380677675 964 True 1201.0 1201 89.1280 1064 2034 1 chr3A.!!$R2 970
3 TraesCS3A01G214400 chr3A 438449532 438450506 974 True 1181.0 1181 88.5280 1050 2031 1 chr3A.!!$R4 981
4 TraesCS3A01G214400 chr3A 380666856 380667811 955 True 1120.0 1120 87.9540 1067 2019 1 chr3A.!!$R1 952
5 TraesCS3A01G214400 chr3A 389759277 389759994 717 False 977.0 977 91.3100 1303 2021 1 chr3A.!!$F1 718
6 TraesCS3A01G214400 chr3A 389728649 389729834 1185 False 635.0 819 86.2335 1 1307 2 chr3A.!!$F3 1306
7 TraesCS3A01G214400 chr1A 499581769 499582911 1142 True 1531.0 1531 90.8230 783 1933 1 chr1A.!!$R4 1150
8 TraesCS3A01G214400 chr5D 41211013 41212120 1107 False 1314.0 1314 88.1250 920 2031 1 chr5D.!!$F1 1111
9 TraesCS3A01G214400 chr5D 41218668 41220412 1744 False 796.5 1295 87.0045 302 2031 2 chr5D.!!$F5 1729
10 TraesCS3A01G214400 chr5A 379908056 379909026 970 True 1199.0 1199 88.9570 1050 2024 1 chr5A.!!$R1 974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.179171 CGGACGAACGAGCTACACAT 60.179 55.0 0.14 0.0 35.47 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1358 1702 0.549169 CCTGAGAAACCCTACCCCCA 60.549 60.0 0.0 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.177531 GCGGACGAACGAGCTACA 59.822 61.111 7.62 0.00 35.47 2.74
25 26 0.179171 CGGACGAACGAGCTACACAT 60.179 55.000 0.14 0.00 35.47 3.21
33 34 1.480954 ACGAGCTACACATCCGGATTT 59.519 47.619 16.19 5.51 0.00 2.17
34 35 2.093658 ACGAGCTACACATCCGGATTTT 60.094 45.455 16.19 1.03 0.00 1.82
193 195 1.863454 GCGTGAGGTCATCATGATGTC 59.137 52.381 30.01 25.21 46.30 3.06
198 200 3.054948 TGAGGTCATCATGATGTCAGCAA 60.055 43.478 30.01 11.39 39.72 3.91
205 207 4.957759 TCATGATGTCAGCAATCAACAG 57.042 40.909 0.00 0.00 0.00 3.16
208 210 2.227149 TGATGTCAGCAATCAACAGTGC 59.773 45.455 0.00 0.00 44.26 4.40
214 216 1.130955 GCAATCAACAGTGCGTTTGG 58.869 50.000 0.00 0.00 34.86 3.28
217 219 1.890876 ATCAACAGTGCGTTTGGCTA 58.109 45.000 0.00 0.00 44.05 3.93
230 232 2.113860 TTGGCTAGGTCAACAGATGC 57.886 50.000 0.00 0.00 0.00 3.91
249 251 1.503818 CGTGGGTCCCGTTTGTCAAG 61.504 60.000 2.65 0.00 0.00 3.02
267 269 6.166279 TGTCAAGGTCACAGATTAGCTAAAG 58.834 40.000 10.85 6.35 0.00 1.85
268 270 6.014584 TGTCAAGGTCACAGATTAGCTAAAGA 60.015 38.462 10.85 1.47 0.00 2.52
269 271 6.533367 GTCAAGGTCACAGATTAGCTAAAGAG 59.467 42.308 10.85 5.63 0.00 2.85
395 419 1.529796 CAAATAGGGCGGGCTACCA 59.470 57.895 0.26 0.00 36.13 3.25
437 461 4.593864 GCGCCCCGGCTAGAAGAG 62.594 72.222 3.84 0.00 39.32 2.85
446 470 1.455959 GCTAGAAGAGCCCGAGGGA 60.456 63.158 13.28 0.00 46.41 4.20
449 473 1.410882 CTAGAAGAGCCCGAGGGAAAG 59.589 57.143 13.28 0.00 37.50 2.62
517 547 3.251509 TCCAGCAGCAGCAAGGGA 61.252 61.111 3.17 4.43 45.49 4.20
518 548 2.044252 CCAGCAGCAGCAAGGGAT 60.044 61.111 3.17 0.00 45.49 3.85
522 552 3.515286 CAGCAGCAAGGGATGGCG 61.515 66.667 0.00 0.00 34.54 5.69
646 978 4.379243 AAGTGAGGGTGCGGCGAG 62.379 66.667 12.98 0.00 0.00 5.03
653 985 3.766691 GGTGCGGCGAGGGAAGTA 61.767 66.667 12.98 0.00 0.00 2.24
654 986 2.202756 GTGCGGCGAGGGAAGTAG 60.203 66.667 12.98 0.00 0.00 2.57
655 987 3.458163 TGCGGCGAGGGAAGTAGG 61.458 66.667 12.98 0.00 0.00 3.18
656 988 4.222847 GCGGCGAGGGAAGTAGGG 62.223 72.222 12.98 0.00 0.00 3.53
657 989 3.537874 CGGCGAGGGAAGTAGGGG 61.538 72.222 0.00 0.00 0.00 4.79
658 990 3.162154 GGCGAGGGAAGTAGGGGG 61.162 72.222 0.00 0.00 0.00 5.40
659 991 3.862991 GCGAGGGAAGTAGGGGGC 61.863 72.222 0.00 0.00 0.00 5.80
660 992 3.537874 CGAGGGAAGTAGGGGGCG 61.538 72.222 0.00 0.00 0.00 6.13
661 993 3.162154 GAGGGAAGTAGGGGGCGG 61.162 72.222 0.00 0.00 0.00 6.13
719 1051 0.464554 GGGCAGACAGGACAATAGGC 60.465 60.000 0.00 0.00 0.00 3.93
765 1097 1.535860 GCAGTAGTAGAGAGCAGCAGC 60.536 57.143 0.00 0.00 42.56 5.25
801 1133 3.367910 GCAGAGTAGCAGCAAGAAGTAGT 60.368 47.826 0.00 0.00 0.00 2.73
885 1218 2.591715 GAGCACACGGGCAACACT 60.592 61.111 0.00 0.00 39.74 3.55
1028 1362 0.393808 GGGGTGCAACATACGGTGAT 60.394 55.000 3.06 0.00 39.98 3.06
1036 1370 3.653344 CAACATACGGTGATGGATCGAT 58.347 45.455 0.00 0.00 0.00 3.59
1065 1399 2.123425 CGGGAATCGGAGGAGGGA 60.123 66.667 0.00 0.00 34.75 4.20
1080 1414 0.104934 AGGGACTCACAGTGGAGGTT 60.105 55.000 0.00 0.00 39.27 3.50
1084 1418 1.141053 GACTCACAGTGGAGGTTGGTT 59.859 52.381 0.00 0.00 39.27 3.67
1205 1547 1.031571 GCATGTTGGCCTCGATCCAA 61.032 55.000 13.39 13.39 40.98 3.53
1218 1560 3.250744 TCGATCCAACAACGAAGATGAC 58.749 45.455 0.00 0.00 33.32 3.06
1220 1562 2.804697 TCCAACAACGAAGATGACGA 57.195 45.000 0.00 0.00 33.32 4.20
1228 1571 5.466819 ACAACGAAGATGACGAAGACAATA 58.533 37.500 0.00 0.00 35.03 1.90
1244 1587 4.968080 AGACAATAATGAGGAGGCTTCTCT 59.032 41.667 23.03 7.07 37.65 3.10
1346 1690 2.491022 GGTGATAGCGAGCGAGGGT 61.491 63.158 0.00 0.00 0.00 4.34
1358 1702 2.526046 CGAGGGTGTGGGGGAACTT 61.526 63.158 0.00 0.00 0.00 2.66
1363 1707 3.189646 TGTGGGGGAACTTGGGGG 61.190 66.667 0.00 0.00 0.00 5.40
1371 1715 0.781920 GGAACTTGGGGGTAGGGTTT 59.218 55.000 0.00 0.00 0.00 3.27
1539 1891 1.207488 TGCTAGATGGGCCAAGGTGT 61.207 55.000 11.89 0.00 0.00 4.16
1581 1933 6.015603 CCACTAATACAGTAGTAGTTAGGCCC 60.016 46.154 16.41 0.00 37.46 5.80
1585 1937 7.506361 AATACAGTAGTAGTTAGGCCCTTTT 57.494 36.000 0.00 0.00 32.86 2.27
1588 1940 5.046520 ACAGTAGTAGTTAGGCCCTTTTCTG 60.047 44.000 0.00 0.00 0.00 3.02
1792 2154 3.440872 TGTTTTGCCGCGGTTTTATCTAT 59.559 39.130 28.70 0.00 0.00 1.98
1889 2251 9.758651 ACCCAGACATTTTAGTTTTAACATTTC 57.241 29.630 0.00 0.00 0.00 2.17
2030 2392 8.863086 ACTATAGCTTAATTATCGGGTGTTACA 58.137 33.333 0.00 0.00 0.00 2.41
2031 2393 9.871238 CTATAGCTTAATTATCGGGTGTTACAT 57.129 33.333 0.00 0.00 0.00 2.29
2032 2394 8.773404 ATAGCTTAATTATCGGGTGTTACATC 57.227 34.615 0.00 0.00 0.00 3.06
2033 2395 6.827727 AGCTTAATTATCGGGTGTTACATCT 58.172 36.000 0.00 0.00 0.00 2.90
2034 2396 7.959175 AGCTTAATTATCGGGTGTTACATCTA 58.041 34.615 0.00 0.00 0.00 1.98
2035 2397 8.426489 AGCTTAATTATCGGGTGTTACATCTAA 58.574 33.333 0.00 0.00 0.00 2.10
2036 2398 8.493547 GCTTAATTATCGGGTGTTACATCTAAC 58.506 37.037 0.00 0.00 33.92 2.34
2037 2399 9.760077 CTTAATTATCGGGTGTTACATCTAACT 57.240 33.333 0.00 0.00 34.38 2.24
2040 2402 9.538508 AATTATCGGGTGTTACATCTAACTTAC 57.461 33.333 0.00 0.00 34.38 2.34
2041 2403 5.329035 TCGGGTGTTACATCTAACTTACC 57.671 43.478 0.00 0.00 34.38 2.85
2042 2404 4.160252 TCGGGTGTTACATCTAACTTACCC 59.840 45.833 8.54 8.54 41.59 3.69
2043 2405 4.681512 CGGGTGTTACATCTAACTTACCCC 60.682 50.000 11.49 6.29 41.80 4.95
2044 2406 4.225717 GGGTGTTACATCTAACTTACCCCA 59.774 45.833 7.73 0.00 40.34 4.96
2045 2407 5.425630 GGTGTTACATCTAACTTACCCCAG 58.574 45.833 0.00 0.00 34.38 4.45
2046 2408 5.046087 GGTGTTACATCTAACTTACCCCAGT 60.046 44.000 0.00 0.00 34.38 4.00
2047 2409 6.470278 GTGTTACATCTAACTTACCCCAGTT 58.530 40.000 0.00 0.00 40.28 3.16
2048 2410 6.370718 GTGTTACATCTAACTTACCCCAGTTG 59.629 42.308 0.00 0.00 37.57 3.16
2049 2411 6.043474 TGTTACATCTAACTTACCCCAGTTGT 59.957 38.462 0.00 0.00 37.57 3.32
2050 2412 5.161943 ACATCTAACTTACCCCAGTTGTC 57.838 43.478 0.00 0.00 37.57 3.18
2051 2413 3.947910 TCTAACTTACCCCAGTTGTCG 57.052 47.619 0.00 0.00 37.57 4.35
2052 2414 3.233507 TCTAACTTACCCCAGTTGTCGT 58.766 45.455 0.00 0.00 37.57 4.34
2053 2415 4.406456 TCTAACTTACCCCAGTTGTCGTA 58.594 43.478 0.00 0.00 37.57 3.43
2054 2416 5.018809 TCTAACTTACCCCAGTTGTCGTAT 58.981 41.667 0.00 0.00 37.57 3.06
2055 2417 6.186957 TCTAACTTACCCCAGTTGTCGTATA 58.813 40.000 0.00 0.00 37.57 1.47
2056 2418 4.996788 ACTTACCCCAGTTGTCGTATAG 57.003 45.455 0.00 0.00 0.00 1.31
2057 2419 3.703052 ACTTACCCCAGTTGTCGTATAGG 59.297 47.826 0.00 0.00 0.00 2.57
2058 2420 0.828677 ACCCCAGTTGTCGTATAGGC 59.171 55.000 0.00 0.00 0.00 3.93
2059 2421 1.120530 CCCCAGTTGTCGTATAGGCT 58.879 55.000 0.00 0.00 0.00 4.58
2060 2422 2.313317 CCCCAGTTGTCGTATAGGCTA 58.687 52.381 0.00 0.00 0.00 3.93
2061 2423 2.897969 CCCCAGTTGTCGTATAGGCTAT 59.102 50.000 12.41 12.41 0.00 2.97
2062 2424 3.306088 CCCCAGTTGTCGTATAGGCTATG 60.306 52.174 17.24 1.36 0.00 2.23
2063 2425 3.572682 CCCAGTTGTCGTATAGGCTATGA 59.427 47.826 17.24 3.90 0.00 2.15
2064 2426 4.038763 CCCAGTTGTCGTATAGGCTATGAA 59.961 45.833 17.24 0.00 0.00 2.57
2065 2427 5.279506 CCCAGTTGTCGTATAGGCTATGAAT 60.280 44.000 17.24 0.00 0.00 2.57
2066 2428 5.635280 CCAGTTGTCGTATAGGCTATGAATG 59.365 44.000 17.24 3.86 0.00 2.67
2067 2429 6.447162 CAGTTGTCGTATAGGCTATGAATGA 58.553 40.000 17.24 6.22 0.00 2.57
2068 2430 6.923508 CAGTTGTCGTATAGGCTATGAATGAA 59.076 38.462 17.24 2.20 0.00 2.57
2069 2431 7.438160 CAGTTGTCGTATAGGCTATGAATGAAA 59.562 37.037 17.24 1.55 0.00 2.69
2070 2432 7.438459 AGTTGTCGTATAGGCTATGAATGAAAC 59.562 37.037 17.24 12.98 0.00 2.78
2071 2433 6.811954 TGTCGTATAGGCTATGAATGAAACA 58.188 36.000 17.24 8.46 0.00 2.83
2072 2434 7.441836 TGTCGTATAGGCTATGAATGAAACAT 58.558 34.615 17.24 0.00 0.00 2.71
2073 2435 8.581578 TGTCGTATAGGCTATGAATGAAACATA 58.418 33.333 17.24 0.00 0.00 2.29
2074 2436 9.419297 GTCGTATAGGCTATGAATGAAACATAA 57.581 33.333 17.24 0.00 31.26 1.90
2075 2437 9.639601 TCGTATAGGCTATGAATGAAACATAAG 57.360 33.333 17.24 0.00 31.26 1.73
2076 2438 9.639601 CGTATAGGCTATGAATGAAACATAAGA 57.360 33.333 17.24 0.00 31.26 2.10
2079 2441 9.851686 ATAGGCTATGAATGAAACATAAGACAA 57.148 29.630 6.15 0.00 31.26 3.18
2080 2442 8.757982 AGGCTATGAATGAAACATAAGACAAT 57.242 30.769 0.00 0.00 31.26 2.71
2081 2443 8.627403 AGGCTATGAATGAAACATAAGACAATG 58.373 33.333 0.00 0.00 31.26 2.82
2082 2444 8.623903 GGCTATGAATGAAACATAAGACAATGA 58.376 33.333 0.00 0.00 31.26 2.57
2087 2449 9.897744 TGAATGAAACATAAGACAATGAACTTC 57.102 29.630 0.00 0.00 0.00 3.01
2093 2455 9.899226 AAACATAAGACAATGAACTTCTTAAGC 57.101 29.630 0.00 0.00 35.88 3.09
2094 2456 8.621532 ACATAAGACAATGAACTTCTTAAGCA 57.378 30.769 0.00 0.00 35.88 3.91
2095 2457 8.507249 ACATAAGACAATGAACTTCTTAAGCAC 58.493 33.333 0.00 0.00 35.88 4.40
2096 2458 5.597813 AGACAATGAACTTCTTAAGCACG 57.402 39.130 0.00 0.00 0.00 5.34
2097 2459 4.452455 AGACAATGAACTTCTTAAGCACGG 59.548 41.667 0.00 0.00 0.00 4.94
2098 2460 4.385825 ACAATGAACTTCTTAAGCACGGA 58.614 39.130 0.00 0.00 0.00 4.69
2099 2461 4.819630 ACAATGAACTTCTTAAGCACGGAA 59.180 37.500 0.00 0.00 0.00 4.30
2100 2462 5.298276 ACAATGAACTTCTTAAGCACGGAAA 59.702 36.000 0.00 0.00 0.00 3.13
2101 2463 6.183360 ACAATGAACTTCTTAAGCACGGAAAA 60.183 34.615 0.00 0.00 0.00 2.29
2102 2464 5.821516 TGAACTTCTTAAGCACGGAAAAA 57.178 34.783 0.00 0.00 0.00 1.94
2131 2493 6.244552 AGAGGATGATCTTCTTAACATGCA 57.755 37.500 0.70 0.00 27.29 3.96
2132 2494 6.656902 AGAGGATGATCTTCTTAACATGCAA 58.343 36.000 0.70 0.00 27.29 4.08
2133 2495 7.114754 AGAGGATGATCTTCTTAACATGCAAA 58.885 34.615 0.70 0.00 27.29 3.68
2134 2496 7.778853 AGAGGATGATCTTCTTAACATGCAAAT 59.221 33.333 0.70 0.00 27.29 2.32
2135 2497 7.938715 AGGATGATCTTCTTAACATGCAAATC 58.061 34.615 8.38 0.00 34.46 2.17
2136 2498 7.558807 AGGATGATCTTCTTAACATGCAAATCA 59.441 33.333 8.38 0.00 34.46 2.57
2137 2499 7.646922 GGATGATCTTCTTAACATGCAAATCAC 59.353 37.037 8.38 0.00 32.81 3.06
2138 2500 7.451501 TGATCTTCTTAACATGCAAATCACA 57.548 32.000 0.00 0.00 0.00 3.58
2139 2501 7.532571 TGATCTTCTTAACATGCAAATCACAG 58.467 34.615 0.00 0.00 0.00 3.66
2140 2502 6.258230 TCTTCTTAACATGCAAATCACAGG 57.742 37.500 0.00 0.00 0.00 4.00
2141 2503 4.439305 TCTTAACATGCAAATCACAGGC 57.561 40.909 0.00 0.00 0.00 4.85
2142 2504 3.825585 TCTTAACATGCAAATCACAGGCA 59.174 39.130 0.00 0.00 42.43 4.75
2144 2506 3.688694 AACATGCAAATCACAGGCATT 57.311 38.095 0.00 0.00 45.34 3.56
2145 2507 4.804868 AACATGCAAATCACAGGCATTA 57.195 36.364 0.00 0.00 45.34 1.90
2146 2508 4.380841 ACATGCAAATCACAGGCATTAG 57.619 40.909 0.00 0.00 45.34 1.73
2147 2509 4.018490 ACATGCAAATCACAGGCATTAGA 58.982 39.130 0.00 0.00 45.34 2.10
2148 2510 4.647853 ACATGCAAATCACAGGCATTAGAT 59.352 37.500 0.00 0.00 45.34 1.98
2149 2511 4.906065 TGCAAATCACAGGCATTAGATC 57.094 40.909 0.00 0.00 31.58 2.75
2150 2512 4.271661 TGCAAATCACAGGCATTAGATCA 58.728 39.130 0.00 0.00 31.58 2.92
2151 2513 4.705991 TGCAAATCACAGGCATTAGATCAA 59.294 37.500 0.00 0.00 31.58 2.57
2152 2514 5.039333 GCAAATCACAGGCATTAGATCAAC 58.961 41.667 0.00 0.00 0.00 3.18
2153 2515 5.393352 GCAAATCACAGGCATTAGATCAACA 60.393 40.000 0.00 0.00 0.00 3.33
2154 2516 6.682113 GCAAATCACAGGCATTAGATCAACAT 60.682 38.462 0.00 0.00 0.00 2.71
2155 2517 6.387041 AATCACAGGCATTAGATCAACATG 57.613 37.500 0.00 0.00 0.00 3.21
2156 2518 5.101648 TCACAGGCATTAGATCAACATGA 57.898 39.130 0.00 0.00 0.00 3.07
2157 2519 5.499313 TCACAGGCATTAGATCAACATGAA 58.501 37.500 0.00 0.00 0.00 2.57
2158 2520 5.945191 TCACAGGCATTAGATCAACATGAAA 59.055 36.000 0.00 0.00 0.00 2.69
2159 2521 6.433716 TCACAGGCATTAGATCAACATGAAAA 59.566 34.615 0.00 0.00 0.00 2.29
2160 2522 7.039853 TCACAGGCATTAGATCAACATGAAAAA 60.040 33.333 0.00 0.00 0.00 1.94
2161 2523 7.062605 CACAGGCATTAGATCAACATGAAAAAC 59.937 37.037 0.00 0.00 0.00 2.43
2162 2524 7.092079 CAGGCATTAGATCAACATGAAAAACA 58.908 34.615 0.00 0.00 0.00 2.83
2163 2525 7.599621 CAGGCATTAGATCAACATGAAAAACAA 59.400 33.333 0.00 0.00 0.00 2.83
2164 2526 8.316214 AGGCATTAGATCAACATGAAAAACAAT 58.684 29.630 0.00 0.00 0.00 2.71
2165 2527 9.585099 GGCATTAGATCAACATGAAAAACAATA 57.415 29.630 0.00 0.00 0.00 1.90
2171 2533 9.362539 AGATCAACATGAAAAACAATATGAAGC 57.637 29.630 0.00 0.00 0.00 3.86
2172 2534 7.565450 TCAACATGAAAAACAATATGAAGCG 57.435 32.000 0.00 0.00 0.00 4.68
2173 2535 7.144661 TCAACATGAAAAACAATATGAAGCGT 58.855 30.769 0.00 0.00 0.00 5.07
2174 2536 7.651304 TCAACATGAAAAACAATATGAAGCGTT 59.349 29.630 0.00 0.00 0.00 4.84
2175 2537 8.910666 CAACATGAAAAACAATATGAAGCGTTA 58.089 29.630 0.00 0.00 0.00 3.18
2176 2538 9.638239 AACATGAAAAACAATATGAAGCGTTAT 57.362 25.926 0.00 0.00 0.00 1.89
2177 2539 9.638239 ACATGAAAAACAATATGAAGCGTTATT 57.362 25.926 0.00 0.00 0.00 1.40
2180 2542 9.554724 TGAAAAACAATATGAAGCGTTATTCTC 57.445 29.630 0.00 0.00 0.00 2.87
2181 2543 9.554724 GAAAAACAATATGAAGCGTTATTCTCA 57.445 29.630 0.00 0.00 0.00 3.27
2182 2544 9.559958 AAAAACAATATGAAGCGTTATTCTCAG 57.440 29.630 0.00 0.00 0.00 3.35
2183 2545 6.851222 ACAATATGAAGCGTTATTCTCAGG 57.149 37.500 0.00 0.00 0.00 3.86
2184 2546 6.582636 ACAATATGAAGCGTTATTCTCAGGA 58.417 36.000 0.00 0.00 0.00 3.86
2185 2547 6.703607 ACAATATGAAGCGTTATTCTCAGGAG 59.296 38.462 0.00 0.00 0.00 3.69
2186 2548 3.526931 TGAAGCGTTATTCTCAGGAGG 57.473 47.619 0.00 0.00 0.00 4.30
2187 2549 2.205911 GAAGCGTTATTCTCAGGAGGC 58.794 52.381 0.00 0.00 0.00 4.70
2188 2550 1.195115 AGCGTTATTCTCAGGAGGCA 58.805 50.000 0.00 0.00 0.00 4.75
2189 2551 1.134670 AGCGTTATTCTCAGGAGGCAC 60.135 52.381 0.00 0.00 0.00 5.01
2190 2552 1.560923 CGTTATTCTCAGGAGGCACG 58.439 55.000 0.00 0.00 0.00 5.34
2191 2553 1.802880 CGTTATTCTCAGGAGGCACGG 60.803 57.143 0.00 0.00 0.00 4.94
2192 2554 1.207329 GTTATTCTCAGGAGGCACGGT 59.793 52.381 0.00 0.00 0.00 4.83
2193 2555 1.112113 TATTCTCAGGAGGCACGGTC 58.888 55.000 0.00 0.00 0.00 4.79
2194 2556 0.904865 ATTCTCAGGAGGCACGGTCA 60.905 55.000 0.00 0.00 0.00 4.02
2195 2557 1.118965 TTCTCAGGAGGCACGGTCAA 61.119 55.000 0.00 0.00 0.00 3.18
2196 2558 1.374758 CTCAGGAGGCACGGTCAAC 60.375 63.158 0.00 0.00 0.00 3.18
2197 2559 2.099652 CTCAGGAGGCACGGTCAACA 62.100 60.000 0.00 0.00 0.00 3.33
2198 2560 1.669115 CAGGAGGCACGGTCAACAG 60.669 63.158 0.00 0.00 0.00 3.16
2199 2561 3.050275 GGAGGCACGGTCAACAGC 61.050 66.667 0.00 0.00 0.00 4.40
2200 2562 2.031163 GAGGCACGGTCAACAGCT 59.969 61.111 0.00 0.00 0.00 4.24
2201 2563 2.029844 GAGGCACGGTCAACAGCTC 61.030 63.158 0.00 0.00 0.00 4.09
2202 2564 3.414700 GGCACGGTCAACAGCTCG 61.415 66.667 0.00 0.00 0.00 5.03
2203 2565 2.661866 GCACGGTCAACAGCTCGT 60.662 61.111 0.00 0.00 36.19 4.18
2204 2566 3.234390 CACGGTCAACAGCTCGTG 58.766 61.111 8.69 8.69 44.98 4.35
2205 2567 3.125607 ACGGTCAACAGCTCGTGA 58.874 55.556 0.00 0.00 34.40 4.35
2206 2568 1.666011 ACGGTCAACAGCTCGTGAT 59.334 52.632 0.00 0.00 34.40 3.06
2207 2569 0.667487 ACGGTCAACAGCTCGTGATG 60.667 55.000 0.47 0.47 34.40 3.07
2208 2570 1.790387 GGTCAACAGCTCGTGATGC 59.210 57.895 2.12 0.00 31.91 3.91
2209 2571 1.639298 GGTCAACAGCTCGTGATGCC 61.639 60.000 2.12 0.00 31.91 4.40
2210 2572 1.737735 TCAACAGCTCGTGATGCCG 60.738 57.895 2.12 0.00 31.91 5.69
2211 2573 3.121030 AACAGCTCGTGATGCCGC 61.121 61.111 2.12 0.00 31.91 6.53
2212 2574 3.881952 AACAGCTCGTGATGCCGCA 62.882 57.895 2.12 0.00 31.91 5.69
2213 2575 2.893895 CAGCTCGTGATGCCGCAT 60.894 61.111 5.28 5.28 0.00 4.73
2214 2576 1.592400 CAGCTCGTGATGCCGCATA 60.592 57.895 5.67 0.00 0.00 3.14
2215 2577 1.592669 AGCTCGTGATGCCGCATAC 60.593 57.895 5.67 4.60 0.00 2.39
2216 2578 2.598632 GCTCGTGATGCCGCATACC 61.599 63.158 5.67 0.00 0.00 2.73
2217 2579 1.227234 CTCGTGATGCCGCATACCA 60.227 57.895 5.67 0.00 0.00 3.25
2218 2580 1.490693 CTCGTGATGCCGCATACCAC 61.491 60.000 5.67 10.19 0.00 4.16
2219 2581 1.813337 CGTGATGCCGCATACCACA 60.813 57.895 19.62 7.07 0.00 4.17
2220 2582 1.365368 CGTGATGCCGCATACCACAA 61.365 55.000 19.62 0.00 0.00 3.33
2221 2583 0.098728 GTGATGCCGCATACCACAAC 59.901 55.000 16.47 0.78 0.00 3.32
2222 2584 0.322008 TGATGCCGCATACCACAACA 60.322 50.000 5.67 0.00 0.00 3.33
2223 2585 1.024271 GATGCCGCATACCACAACAT 58.976 50.000 5.67 0.00 0.00 2.71
2224 2586 1.405105 GATGCCGCATACCACAACATT 59.595 47.619 5.67 0.00 0.00 2.71
2225 2587 0.808125 TGCCGCATACCACAACATTC 59.192 50.000 0.00 0.00 0.00 2.67
2226 2588 0.100503 GCCGCATACCACAACATTCC 59.899 55.000 0.00 0.00 0.00 3.01
2227 2589 1.458398 CCGCATACCACAACATTCCA 58.542 50.000 0.00 0.00 0.00 3.53
2228 2590 1.815613 CCGCATACCACAACATTCCAA 59.184 47.619 0.00 0.00 0.00 3.53
2229 2591 2.159393 CCGCATACCACAACATTCCAAG 60.159 50.000 0.00 0.00 0.00 3.61
2230 2592 2.731968 CGCATACCACAACATTCCAAGC 60.732 50.000 0.00 0.00 0.00 4.01
2231 2593 2.493278 GCATACCACAACATTCCAAGCT 59.507 45.455 0.00 0.00 0.00 3.74
2232 2594 3.428045 GCATACCACAACATTCCAAGCTC 60.428 47.826 0.00 0.00 0.00 4.09
2233 2595 2.363306 ACCACAACATTCCAAGCTCA 57.637 45.000 0.00 0.00 0.00 4.26
2234 2596 2.665165 ACCACAACATTCCAAGCTCAA 58.335 42.857 0.00 0.00 0.00 3.02
2235 2597 2.362077 ACCACAACATTCCAAGCTCAAC 59.638 45.455 0.00 0.00 0.00 3.18
2236 2598 2.624838 CCACAACATTCCAAGCTCAACT 59.375 45.455 0.00 0.00 0.00 3.16
2237 2599 3.068590 CCACAACATTCCAAGCTCAACTT 59.931 43.478 0.00 0.00 40.05 2.66
2238 2600 4.441913 CCACAACATTCCAAGCTCAACTTT 60.442 41.667 0.00 0.00 36.04 2.66
2239 2601 4.505191 CACAACATTCCAAGCTCAACTTTG 59.495 41.667 0.00 0.00 36.04 2.77
2240 2602 3.375782 ACATTCCAAGCTCAACTTTGC 57.624 42.857 0.00 0.00 36.04 3.68
2241 2603 2.694628 ACATTCCAAGCTCAACTTTGCA 59.305 40.909 0.00 0.00 36.04 4.08
2242 2604 3.132646 ACATTCCAAGCTCAACTTTGCAA 59.867 39.130 0.00 0.00 36.04 4.08
2243 2605 4.202284 ACATTCCAAGCTCAACTTTGCAAT 60.202 37.500 0.00 0.00 36.04 3.56
2244 2606 3.648339 TCCAAGCTCAACTTTGCAATC 57.352 42.857 0.00 0.00 36.04 2.67
2245 2607 2.957680 TCCAAGCTCAACTTTGCAATCA 59.042 40.909 0.00 0.00 36.04 2.57
2246 2608 3.384146 TCCAAGCTCAACTTTGCAATCAA 59.616 39.130 0.00 0.00 36.04 2.57
2247 2609 4.121317 CCAAGCTCAACTTTGCAATCAAA 58.879 39.130 0.00 0.00 39.67 2.69
2248 2610 4.025480 CCAAGCTCAACTTTGCAATCAAAC 60.025 41.667 0.00 0.00 37.28 2.93
2249 2611 4.660789 AGCTCAACTTTGCAATCAAACT 57.339 36.364 0.00 0.00 37.28 2.66
2250 2612 4.614946 AGCTCAACTTTGCAATCAAACTC 58.385 39.130 0.00 0.00 37.28 3.01
2251 2613 4.098349 AGCTCAACTTTGCAATCAAACTCA 59.902 37.500 0.00 0.00 37.28 3.41
2252 2614 4.207841 GCTCAACTTTGCAATCAAACTCAC 59.792 41.667 0.00 0.00 37.28 3.51
2253 2615 5.321959 TCAACTTTGCAATCAAACTCACA 57.678 34.783 0.00 0.00 37.28 3.58
2254 2616 5.718146 TCAACTTTGCAATCAAACTCACAA 58.282 33.333 0.00 0.00 37.28 3.33
2255 2617 5.806502 TCAACTTTGCAATCAAACTCACAAG 59.193 36.000 0.00 0.00 37.28 3.16
2256 2618 4.685924 ACTTTGCAATCAAACTCACAAGG 58.314 39.130 0.00 0.00 37.28 3.61
2257 2619 2.798976 TGCAATCAAACTCACAAGGC 57.201 45.000 0.00 0.00 0.00 4.35
2258 2620 1.340889 TGCAATCAAACTCACAAGGCC 59.659 47.619 0.00 0.00 0.00 5.19
2259 2621 1.615392 GCAATCAAACTCACAAGGCCT 59.385 47.619 0.00 0.00 0.00 5.19
2260 2622 2.819608 GCAATCAAACTCACAAGGCCTA 59.180 45.455 5.16 0.00 0.00 3.93
2261 2623 3.119708 GCAATCAAACTCACAAGGCCTAG 60.120 47.826 5.16 1.04 0.00 3.02
2262 2624 2.185004 TCAAACTCACAAGGCCTAGC 57.815 50.000 5.16 0.00 0.00 3.42
2263 2625 1.419762 TCAAACTCACAAGGCCTAGCA 59.580 47.619 5.16 0.00 0.00 3.49
2264 2626 2.040278 TCAAACTCACAAGGCCTAGCAT 59.960 45.455 5.16 0.00 0.00 3.79
2265 2627 2.821969 CAAACTCACAAGGCCTAGCATT 59.178 45.455 5.16 0.00 30.89 3.56
2266 2628 4.009675 CAAACTCACAAGGCCTAGCATTA 58.990 43.478 5.16 0.00 29.32 1.90
2267 2629 3.268023 ACTCACAAGGCCTAGCATTAC 57.732 47.619 5.16 0.00 29.32 1.89
2268 2630 2.571653 ACTCACAAGGCCTAGCATTACA 59.428 45.455 5.16 0.00 29.32 2.41
2269 2631 3.200825 ACTCACAAGGCCTAGCATTACAT 59.799 43.478 5.16 0.00 29.32 2.29
2270 2632 4.408921 ACTCACAAGGCCTAGCATTACATA 59.591 41.667 5.16 0.00 29.32 2.29
2271 2633 4.960938 TCACAAGGCCTAGCATTACATAG 58.039 43.478 5.16 0.00 29.32 2.23
2272 2634 4.653801 TCACAAGGCCTAGCATTACATAGA 59.346 41.667 5.16 0.00 29.32 1.98
2273 2635 4.752101 CACAAGGCCTAGCATTACATAGAC 59.248 45.833 5.16 0.00 29.32 2.59
2274 2636 4.408921 ACAAGGCCTAGCATTACATAGACA 59.591 41.667 5.16 0.00 29.32 3.41
2275 2637 4.608948 AGGCCTAGCATTACATAGACAC 57.391 45.455 1.29 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.047718 TAGCTCGTTCGTCCGCCAG 62.048 63.158 0.00 0.00 0.00 4.85
7 8 1.546834 GATGTGTAGCTCGTTCGTCC 58.453 55.000 0.00 0.00 0.00 4.79
11 12 0.454600 TCCGGATGTGTAGCTCGTTC 59.545 55.000 0.00 0.00 0.00 3.95
13 14 1.112113 AATCCGGATGTGTAGCTCGT 58.888 50.000 19.95 0.00 0.00 4.18
33 34 5.499139 AAGTTGCTCAGAACGATGAAAAA 57.501 34.783 0.00 0.00 0.00 1.94
34 35 5.065859 TGAAAGTTGCTCAGAACGATGAAAA 59.934 36.000 0.00 0.00 0.00 2.29
36 37 4.126437 TGAAAGTTGCTCAGAACGATGAA 58.874 39.130 0.00 0.00 0.00 2.57
39 40 4.067896 ACATGAAAGTTGCTCAGAACGAT 58.932 39.130 0.00 0.00 0.00 3.73
152 154 8.122330 TCACGCTGACATCATAATTACATTTTC 58.878 33.333 0.00 0.00 0.00 2.29
193 195 1.782569 CAAACGCACTGTTGATTGCTG 59.217 47.619 0.00 0.00 40.84 4.41
198 200 1.806542 CTAGCCAAACGCACTGTTGAT 59.193 47.619 0.00 0.00 40.84 2.57
205 207 0.237498 GTTGACCTAGCCAAACGCAC 59.763 55.000 0.00 0.00 41.38 5.34
208 210 2.163818 TCTGTTGACCTAGCCAAACG 57.836 50.000 0.00 0.00 0.00 3.60
214 216 1.002366 CACGCATCTGTTGACCTAGC 58.998 55.000 0.00 0.00 0.00 3.42
217 219 1.003355 CCCACGCATCTGTTGACCT 60.003 57.895 0.00 0.00 0.00 3.85
230 232 1.503818 CTTGACAAACGGGACCCACG 61.504 60.000 12.15 0.00 37.36 4.94
249 251 6.215495 ACTCTCTTTAGCTAATCTGTGACC 57.785 41.667 7.08 0.00 0.00 4.02
433 457 2.301738 CCCTTTCCCTCGGGCTCTT 61.302 63.158 0.00 0.00 32.83 2.85
622 954 2.046892 CACCCTCACTTGGCCTCG 60.047 66.667 3.32 0.00 0.00 4.63
623 955 2.360475 GCACCCTCACTTGGCCTC 60.360 66.667 3.32 0.00 0.00 4.70
636 968 3.718210 CTACTTCCCTCGCCGCACC 62.718 68.421 0.00 0.00 0.00 5.01
642 974 3.862991 GCCCCCTACTTCCCTCGC 61.863 72.222 0.00 0.00 0.00 5.03
674 1006 4.898765 TGTTGCTGCTGCTGCCCA 62.899 61.111 25.44 19.30 40.48 5.36
706 1038 0.461961 GAGCTCGCCTATTGTCCTGT 59.538 55.000 0.00 0.00 0.00 4.00
711 1043 2.815308 CCGGAGCTCGCCTATTGT 59.185 61.111 7.83 0.00 37.59 2.71
713 1045 4.286320 CGCCGGAGCTCGCCTATT 62.286 66.667 5.05 0.00 37.59 1.73
732 1064 3.589654 TACTGCTGCACCCTCACGC 62.590 63.158 0.00 0.00 0.00 5.34
735 1067 1.186200 CTACTACTGCTGCACCCTCA 58.814 55.000 0.00 0.00 0.00 3.86
736 1068 1.407258 CTCTACTACTGCTGCACCCTC 59.593 57.143 0.00 0.00 0.00 4.30
745 1077 1.535860 GCTGCTGCTCTCTACTACTGC 60.536 57.143 8.53 0.00 36.03 4.40
785 1117 4.856509 TCCTCTACTACTTCTTGCTGCTA 58.143 43.478 0.00 0.00 0.00 3.49
787 1119 4.367450 CATCCTCTACTACTTCTTGCTGC 58.633 47.826 0.00 0.00 0.00 5.25
788 1120 4.739137 GCCATCCTCTACTACTTCTTGCTG 60.739 50.000 0.00 0.00 0.00 4.41
789 1121 3.386402 GCCATCCTCTACTACTTCTTGCT 59.614 47.826 0.00 0.00 0.00 3.91
801 1133 2.524394 GCTCCCGGCCATCCTCTA 60.524 66.667 2.24 0.00 34.27 2.43
872 1205 4.579384 CCCCAGTGTTGCCCGTGT 62.579 66.667 0.00 0.00 0.00 4.49
961 1295 2.046988 CACCCGAGCTCATGTGCA 60.047 61.111 20.92 0.00 34.99 4.57
1016 1350 3.554960 CCATCGATCCATCACCGTATGTT 60.555 47.826 0.00 0.00 0.00 2.71
1028 1362 1.048601 GCCCTTACTCCATCGATCCA 58.951 55.000 0.00 0.00 0.00 3.41
1036 1370 1.307517 ATTCCCGGCCCTTACTCCA 60.308 57.895 0.00 0.00 0.00 3.86
1065 1399 1.134098 CAACCAACCTCCACTGTGAGT 60.134 52.381 9.86 0.76 0.00 3.41
1205 1547 3.364889 TGTCTTCGTCATCTTCGTTGT 57.635 42.857 0.00 0.00 0.00 3.32
1218 1560 4.065321 AGCCTCCTCATTATTGTCTTCG 57.935 45.455 0.00 0.00 0.00 3.79
1220 1562 5.428131 AGAGAAGCCTCCTCATTATTGTCTT 59.572 40.000 0.00 0.00 40.30 3.01
1228 1571 2.433970 GCTGTAGAGAAGCCTCCTCATT 59.566 50.000 0.00 0.00 40.30 2.57
1330 1674 1.753078 ACACCCTCGCTCGCTATCA 60.753 57.895 0.00 0.00 0.00 2.15
1346 1690 2.656269 TACCCCCAAGTTCCCCCACA 62.656 60.000 0.00 0.00 0.00 4.17
1358 1702 0.549169 CCTGAGAAACCCTACCCCCA 60.549 60.000 0.00 0.00 0.00 4.96
1363 1707 2.612221 CGTTGACCCTGAGAAACCCTAC 60.612 54.545 0.00 0.00 0.00 3.18
1371 1715 2.915659 ACGCCGTTGACCCTGAGA 60.916 61.111 0.00 0.00 0.00 3.27
1539 1891 1.278127 GTGGGCTCTAGTGGCACTTTA 59.722 52.381 27.24 13.16 33.73 1.85
1645 2006 7.010460 GCCATATTTTGTGCTCAACTAAATTCC 59.990 37.037 0.00 0.00 40.03 3.01
1847 2209 3.190327 TCTGGGTTGTGACAAATATTGCG 59.810 43.478 0.00 0.00 0.00 4.85
1889 2251 5.995055 TCAAGGCAAACAACAAAAGTTTTG 58.005 33.333 23.65 23.65 37.10 2.44
1941 2303 4.518970 TGCTAATCTCACCTTGGTTCAAAC 59.481 41.667 0.00 0.00 0.00 2.93
2021 2383 4.225717 TGGGGTAAGTTAGATGTAACACCC 59.774 45.833 23.36 23.36 46.07 4.61
2024 2386 6.043474 ACAACTGGGGTAAGTTAGATGTAACA 59.957 38.462 14.56 0.00 41.06 2.41
2025 2387 6.470278 ACAACTGGGGTAAGTTAGATGTAAC 58.530 40.000 4.61 4.61 38.34 2.50
2026 2388 6.572898 CGACAACTGGGGTAAGTTAGATGTAA 60.573 42.308 0.00 0.00 38.34 2.41
2028 2390 4.322499 CGACAACTGGGGTAAGTTAGATGT 60.322 45.833 0.00 0.00 38.34 3.06
2029 2391 4.181578 CGACAACTGGGGTAAGTTAGATG 58.818 47.826 0.00 0.00 38.34 2.90
2030 2392 3.836562 ACGACAACTGGGGTAAGTTAGAT 59.163 43.478 0.00 0.00 38.34 1.98
2031 2393 3.233507 ACGACAACTGGGGTAAGTTAGA 58.766 45.455 0.00 0.00 38.34 2.10
2032 2394 3.672767 ACGACAACTGGGGTAAGTTAG 57.327 47.619 0.00 0.00 38.34 2.34
2033 2395 5.360714 CCTATACGACAACTGGGGTAAGTTA 59.639 44.000 0.00 0.00 38.34 2.24
2034 2396 4.161001 CCTATACGACAACTGGGGTAAGTT 59.839 45.833 0.00 0.00 41.08 2.66
2035 2397 3.703052 CCTATACGACAACTGGGGTAAGT 59.297 47.826 0.00 0.00 0.00 2.24
2036 2398 3.492137 GCCTATACGACAACTGGGGTAAG 60.492 52.174 0.00 0.00 0.00 2.34
2037 2399 2.431782 GCCTATACGACAACTGGGGTAA 59.568 50.000 0.00 0.00 0.00 2.85
2038 2400 2.034124 GCCTATACGACAACTGGGGTA 58.966 52.381 0.00 0.00 0.00 3.69
2039 2401 0.828677 GCCTATACGACAACTGGGGT 59.171 55.000 0.00 0.00 0.00 4.95
2040 2402 1.120530 AGCCTATACGACAACTGGGG 58.879 55.000 0.00 0.00 0.00 4.96
2041 2403 3.572682 TCATAGCCTATACGACAACTGGG 59.427 47.826 0.00 0.00 0.00 4.45
2042 2404 4.848562 TCATAGCCTATACGACAACTGG 57.151 45.455 0.00 0.00 0.00 4.00
2043 2405 6.447162 TCATTCATAGCCTATACGACAACTG 58.553 40.000 0.00 0.00 0.00 3.16
2044 2406 6.650427 TCATTCATAGCCTATACGACAACT 57.350 37.500 0.00 0.00 0.00 3.16
2045 2407 7.223971 TGTTTCATTCATAGCCTATACGACAAC 59.776 37.037 0.00 0.00 0.00 3.32
2046 2408 7.269316 TGTTTCATTCATAGCCTATACGACAA 58.731 34.615 0.00 0.00 0.00 3.18
2047 2409 6.811954 TGTTTCATTCATAGCCTATACGACA 58.188 36.000 0.00 0.00 0.00 4.35
2048 2410 7.891183 ATGTTTCATTCATAGCCTATACGAC 57.109 36.000 0.00 0.00 0.00 4.34
2049 2411 9.639601 CTTATGTTTCATTCATAGCCTATACGA 57.360 33.333 0.00 0.00 0.00 3.43
2050 2412 9.639601 TCTTATGTTTCATTCATAGCCTATACG 57.360 33.333 0.00 0.00 0.00 3.06
2053 2415 9.851686 TTGTCTTATGTTTCATTCATAGCCTAT 57.148 29.630 0.00 0.00 0.00 2.57
2054 2416 9.851686 ATTGTCTTATGTTTCATTCATAGCCTA 57.148 29.630 0.00 0.00 0.00 3.93
2055 2417 8.627403 CATTGTCTTATGTTTCATTCATAGCCT 58.373 33.333 0.00 0.00 0.00 4.58
2056 2418 8.623903 TCATTGTCTTATGTTTCATTCATAGCC 58.376 33.333 0.00 0.00 0.00 3.93
2061 2423 9.897744 GAAGTTCATTGTCTTATGTTTCATTCA 57.102 29.630 0.00 0.00 0.00 2.57
2067 2429 9.899226 GCTTAAGAAGTTCATTGTCTTATGTTT 57.101 29.630 6.67 0.00 34.65 2.83
2068 2430 9.066892 TGCTTAAGAAGTTCATTGTCTTATGTT 57.933 29.630 6.67 0.00 34.65 2.71
2069 2431 8.507249 GTGCTTAAGAAGTTCATTGTCTTATGT 58.493 33.333 6.67 0.00 34.65 2.29
2070 2432 7.689812 CGTGCTTAAGAAGTTCATTGTCTTATG 59.310 37.037 6.67 0.00 34.65 1.90
2071 2433 7.148407 CCGTGCTTAAGAAGTTCATTGTCTTAT 60.148 37.037 6.67 0.00 34.65 1.73
2072 2434 6.147164 CCGTGCTTAAGAAGTTCATTGTCTTA 59.853 38.462 6.67 0.00 33.70 2.10
2073 2435 5.049405 CCGTGCTTAAGAAGTTCATTGTCTT 60.049 40.000 6.67 0.00 35.77 3.01
2074 2436 4.452455 CCGTGCTTAAGAAGTTCATTGTCT 59.548 41.667 6.67 0.00 0.00 3.41
2075 2437 4.451096 TCCGTGCTTAAGAAGTTCATTGTC 59.549 41.667 6.67 0.00 0.00 3.18
2076 2438 4.385825 TCCGTGCTTAAGAAGTTCATTGT 58.614 39.130 6.67 0.00 0.00 2.71
2077 2439 5.356882 TTCCGTGCTTAAGAAGTTCATTG 57.643 39.130 6.67 0.00 0.00 2.82
2078 2440 6.385649 TTTTCCGTGCTTAAGAAGTTCATT 57.614 33.333 6.67 0.00 0.00 2.57
2079 2441 6.385649 TTTTTCCGTGCTTAAGAAGTTCAT 57.614 33.333 6.67 0.00 0.00 2.57
2080 2442 5.821516 TTTTTCCGTGCTTAAGAAGTTCA 57.178 34.783 6.67 0.00 0.00 3.18
2107 2469 6.656902 TGCATGTTAAGAAGATCATCCTCTT 58.343 36.000 3.93 3.93 38.18 2.85
2108 2470 6.244552 TGCATGTTAAGAAGATCATCCTCT 57.755 37.500 0.00 0.00 0.00 3.69
2109 2471 6.932356 TTGCATGTTAAGAAGATCATCCTC 57.068 37.500 0.00 0.00 0.00 3.71
2110 2472 7.558807 TGATTTGCATGTTAAGAAGATCATCCT 59.441 33.333 0.00 0.00 0.00 3.24
2111 2473 7.646922 GTGATTTGCATGTTAAGAAGATCATCC 59.353 37.037 0.00 0.00 0.00 3.51
2112 2474 8.186163 TGTGATTTGCATGTTAAGAAGATCATC 58.814 33.333 0.00 0.00 0.00 2.92
2113 2475 8.058667 TGTGATTTGCATGTTAAGAAGATCAT 57.941 30.769 0.00 0.00 0.00 2.45
2114 2476 7.362315 CCTGTGATTTGCATGTTAAGAAGATCA 60.362 37.037 0.00 0.00 0.00 2.92
2115 2477 6.971184 CCTGTGATTTGCATGTTAAGAAGATC 59.029 38.462 0.00 0.00 0.00 2.75
2116 2478 6.626623 GCCTGTGATTTGCATGTTAAGAAGAT 60.627 38.462 0.00 0.00 0.00 2.40
2117 2479 5.335897 GCCTGTGATTTGCATGTTAAGAAGA 60.336 40.000 0.00 0.00 0.00 2.87
2118 2480 4.860907 GCCTGTGATTTGCATGTTAAGAAG 59.139 41.667 0.00 0.00 0.00 2.85
2119 2481 4.280425 TGCCTGTGATTTGCATGTTAAGAA 59.720 37.500 0.00 0.00 0.00 2.52
2120 2482 3.825585 TGCCTGTGATTTGCATGTTAAGA 59.174 39.130 0.00 0.00 0.00 2.10
2121 2483 4.177165 TGCCTGTGATTTGCATGTTAAG 57.823 40.909 0.00 0.00 0.00 1.85
2122 2484 4.804868 ATGCCTGTGATTTGCATGTTAA 57.195 36.364 0.00 0.00 43.66 2.01
2123 2485 4.804868 AATGCCTGTGATTTGCATGTTA 57.195 36.364 0.00 0.00 44.49 2.41
2124 2486 3.688694 AATGCCTGTGATTTGCATGTT 57.311 38.095 0.00 0.00 44.49 2.71
2125 2487 4.018490 TCTAATGCCTGTGATTTGCATGT 58.982 39.130 0.00 0.00 44.49 3.21
2126 2488 4.642445 TCTAATGCCTGTGATTTGCATG 57.358 40.909 0.00 0.00 44.49 4.06
2128 2490 4.271661 TGATCTAATGCCTGTGATTTGCA 58.728 39.130 0.00 0.00 39.68 4.08
2129 2491 4.906065 TGATCTAATGCCTGTGATTTGC 57.094 40.909 0.00 0.00 0.00 3.68
2130 2492 6.198650 TGTTGATCTAATGCCTGTGATTTG 57.801 37.500 0.00 0.00 0.00 2.32
2131 2493 6.604396 TCATGTTGATCTAATGCCTGTGATTT 59.396 34.615 0.00 0.00 0.00 2.17
2132 2494 6.124340 TCATGTTGATCTAATGCCTGTGATT 58.876 36.000 0.00 0.00 0.00 2.57
2133 2495 5.687780 TCATGTTGATCTAATGCCTGTGAT 58.312 37.500 0.00 0.00 0.00 3.06
2134 2496 5.101648 TCATGTTGATCTAATGCCTGTGA 57.898 39.130 0.00 0.00 0.00 3.58
2135 2497 5.823209 TTCATGTTGATCTAATGCCTGTG 57.177 39.130 0.00 0.00 0.00 3.66
2136 2498 6.839124 TTTTCATGTTGATCTAATGCCTGT 57.161 33.333 0.00 0.00 0.00 4.00
2137 2499 7.092079 TGTTTTTCATGTTGATCTAATGCCTG 58.908 34.615 0.00 0.00 0.00 4.85
2138 2500 7.230849 TGTTTTTCATGTTGATCTAATGCCT 57.769 32.000 0.00 0.00 0.00 4.75
2139 2501 7.887996 TTGTTTTTCATGTTGATCTAATGCC 57.112 32.000 0.00 0.00 0.00 4.40
2145 2507 9.362539 GCTTCATATTGTTTTTCATGTTGATCT 57.637 29.630 0.00 0.00 0.00 2.75
2146 2508 8.316046 CGCTTCATATTGTTTTTCATGTTGATC 58.684 33.333 0.00 0.00 0.00 2.92
2147 2509 7.814107 ACGCTTCATATTGTTTTTCATGTTGAT 59.186 29.630 0.00 0.00 0.00 2.57
2148 2510 7.144661 ACGCTTCATATTGTTTTTCATGTTGA 58.855 30.769 0.00 0.00 0.00 3.18
2149 2511 7.337150 ACGCTTCATATTGTTTTTCATGTTG 57.663 32.000 0.00 0.00 0.00 3.33
2150 2512 7.945033 AACGCTTCATATTGTTTTTCATGTT 57.055 28.000 0.00 0.00 0.00 2.71
2151 2513 9.638239 AATAACGCTTCATATTGTTTTTCATGT 57.362 25.926 0.00 0.00 0.00 3.21
2154 2516 9.554724 GAGAATAACGCTTCATATTGTTTTTCA 57.445 29.630 8.88 0.00 35.85 2.69
2155 2517 9.554724 TGAGAATAACGCTTCATATTGTTTTTC 57.445 29.630 0.00 0.00 34.56 2.29
2156 2518 9.559958 CTGAGAATAACGCTTCATATTGTTTTT 57.440 29.630 0.00 0.00 0.00 1.94
2157 2519 8.184192 CCTGAGAATAACGCTTCATATTGTTTT 58.816 33.333 0.00 0.00 0.00 2.43
2158 2520 7.552687 TCCTGAGAATAACGCTTCATATTGTTT 59.447 33.333 0.00 0.00 0.00 2.83
2159 2521 7.047891 TCCTGAGAATAACGCTTCATATTGTT 58.952 34.615 0.00 0.00 0.00 2.83
2160 2522 6.582636 TCCTGAGAATAACGCTTCATATTGT 58.417 36.000 0.00 0.00 0.00 2.71
2161 2523 6.146837 CCTCCTGAGAATAACGCTTCATATTG 59.853 42.308 0.00 0.00 0.00 1.90
2162 2524 6.226787 CCTCCTGAGAATAACGCTTCATATT 58.773 40.000 0.00 0.00 0.00 1.28
2163 2525 5.788450 CCTCCTGAGAATAACGCTTCATAT 58.212 41.667 0.00 0.00 0.00 1.78
2164 2526 4.501571 GCCTCCTGAGAATAACGCTTCATA 60.502 45.833 0.00 0.00 0.00 2.15
2165 2527 3.742640 GCCTCCTGAGAATAACGCTTCAT 60.743 47.826 0.00 0.00 0.00 2.57
2166 2528 2.418746 GCCTCCTGAGAATAACGCTTCA 60.419 50.000 0.00 0.00 0.00 3.02
2167 2529 2.205911 GCCTCCTGAGAATAACGCTTC 58.794 52.381 0.00 0.00 0.00 3.86
2168 2530 1.555075 TGCCTCCTGAGAATAACGCTT 59.445 47.619 0.00 0.00 0.00 4.68
2169 2531 1.134670 GTGCCTCCTGAGAATAACGCT 60.135 52.381 0.00 0.00 0.00 5.07
2170 2532 1.291132 GTGCCTCCTGAGAATAACGC 58.709 55.000 0.00 0.00 0.00 4.84
2171 2533 1.560923 CGTGCCTCCTGAGAATAACG 58.439 55.000 0.00 0.00 0.00 3.18
2172 2534 1.207329 ACCGTGCCTCCTGAGAATAAC 59.793 52.381 0.00 0.00 0.00 1.89
2173 2535 1.480954 GACCGTGCCTCCTGAGAATAA 59.519 52.381 0.00 0.00 0.00 1.40
2174 2536 1.112113 GACCGTGCCTCCTGAGAATA 58.888 55.000 0.00 0.00 0.00 1.75
2175 2537 0.904865 TGACCGTGCCTCCTGAGAAT 60.905 55.000 0.00 0.00 0.00 2.40
2176 2538 1.118965 TTGACCGTGCCTCCTGAGAA 61.119 55.000 0.00 0.00 0.00 2.87
2177 2539 1.533033 TTGACCGTGCCTCCTGAGA 60.533 57.895 0.00 0.00 0.00 3.27
2178 2540 1.374758 GTTGACCGTGCCTCCTGAG 60.375 63.158 0.00 0.00 0.00 3.35
2179 2541 2.099652 CTGTTGACCGTGCCTCCTGA 62.100 60.000 0.00 0.00 0.00 3.86
2180 2542 1.669115 CTGTTGACCGTGCCTCCTG 60.669 63.158 0.00 0.00 0.00 3.86
2181 2543 2.743718 CTGTTGACCGTGCCTCCT 59.256 61.111 0.00 0.00 0.00 3.69
2182 2544 3.050275 GCTGTTGACCGTGCCTCC 61.050 66.667 0.00 0.00 0.00 4.30
2183 2545 2.029844 GAGCTGTTGACCGTGCCTC 61.030 63.158 0.00 0.00 0.00 4.70
2184 2546 2.031163 GAGCTGTTGACCGTGCCT 59.969 61.111 0.00 0.00 0.00 4.75
2185 2547 3.414700 CGAGCTGTTGACCGTGCC 61.415 66.667 0.00 0.00 0.00 5.01
2186 2548 2.661866 ACGAGCTGTTGACCGTGC 60.662 61.111 0.00 0.00 33.69 5.34
2187 2549 3.234390 CACGAGCTGTTGACCGTG 58.766 61.111 8.69 8.69 44.66 4.94
2188 2550 0.667487 CATCACGAGCTGTTGACCGT 60.667 55.000 0.00 0.00 35.46 4.83
2189 2551 1.959899 GCATCACGAGCTGTTGACCG 61.960 60.000 0.00 0.00 0.00 4.79
2190 2552 1.639298 GGCATCACGAGCTGTTGACC 61.639 60.000 0.00 0.00 0.00 4.02
2191 2553 1.790387 GGCATCACGAGCTGTTGAC 59.210 57.895 0.00 0.00 0.00 3.18
2192 2554 1.737735 CGGCATCACGAGCTGTTGA 60.738 57.895 0.00 0.00 35.47 3.18
2193 2555 2.780643 CGGCATCACGAGCTGTTG 59.219 61.111 0.00 0.00 35.47 3.33
2194 2556 3.121030 GCGGCATCACGAGCTGTT 61.121 61.111 0.00 0.00 40.47 3.16
2195 2557 2.296814 TATGCGGCATCACGAGCTGT 62.297 55.000 20.34 0.00 40.47 4.40
2196 2558 1.592400 TATGCGGCATCACGAGCTG 60.592 57.895 20.34 0.00 41.29 4.24
2197 2559 1.592669 GTATGCGGCATCACGAGCT 60.593 57.895 20.34 0.00 35.47 4.09
2198 2560 2.598632 GGTATGCGGCATCACGAGC 61.599 63.158 20.34 7.84 35.47 5.03
2199 2561 1.227234 TGGTATGCGGCATCACGAG 60.227 57.895 20.34 0.00 35.47 4.18
2200 2562 1.520564 GTGGTATGCGGCATCACGA 60.521 57.895 20.34 10.36 35.47 4.35
2201 2563 1.365368 TTGTGGTATGCGGCATCACG 61.365 55.000 20.34 0.00 0.00 4.35
2202 2564 0.098728 GTTGTGGTATGCGGCATCAC 59.901 55.000 20.34 21.00 0.00 3.06
2203 2565 0.322008 TGTTGTGGTATGCGGCATCA 60.322 50.000 20.34 9.58 0.00 3.07
2204 2566 1.024271 ATGTTGTGGTATGCGGCATC 58.976 50.000 20.34 10.92 0.00 3.91
2205 2567 1.405105 GAATGTTGTGGTATGCGGCAT 59.595 47.619 20.57 20.57 0.00 4.40
2206 2568 0.808125 GAATGTTGTGGTATGCGGCA 59.192 50.000 4.58 4.58 0.00 5.69
2207 2569 0.100503 GGAATGTTGTGGTATGCGGC 59.899 55.000 0.00 0.00 0.00 6.53
2208 2570 1.458398 TGGAATGTTGTGGTATGCGG 58.542 50.000 0.00 0.00 0.00 5.69
2209 2571 2.731968 GCTTGGAATGTTGTGGTATGCG 60.732 50.000 0.00 0.00 0.00 4.73
2210 2572 2.493278 AGCTTGGAATGTTGTGGTATGC 59.507 45.455 0.00 0.00 0.00 3.14
2211 2573 3.758023 TGAGCTTGGAATGTTGTGGTATG 59.242 43.478 0.00 0.00 0.00 2.39
2212 2574 4.032960 TGAGCTTGGAATGTTGTGGTAT 57.967 40.909 0.00 0.00 0.00 2.73
2213 2575 3.500448 TGAGCTTGGAATGTTGTGGTA 57.500 42.857 0.00 0.00 0.00 3.25
2214 2576 2.362077 GTTGAGCTTGGAATGTTGTGGT 59.638 45.455 0.00 0.00 0.00 4.16
2215 2577 2.624838 AGTTGAGCTTGGAATGTTGTGG 59.375 45.455 0.00 0.00 0.00 4.17
2216 2578 3.996150 AGTTGAGCTTGGAATGTTGTG 57.004 42.857 0.00 0.00 0.00 3.33
2217 2579 4.685924 CAAAGTTGAGCTTGGAATGTTGT 58.314 39.130 0.00 0.00 37.52 3.32
2218 2580 3.492011 GCAAAGTTGAGCTTGGAATGTTG 59.508 43.478 0.00 0.00 37.52 3.33
2219 2581 3.132646 TGCAAAGTTGAGCTTGGAATGTT 59.867 39.130 0.00 0.00 37.52 2.71
2220 2582 2.694628 TGCAAAGTTGAGCTTGGAATGT 59.305 40.909 0.00 0.00 37.52 2.71
2221 2583 3.374220 TGCAAAGTTGAGCTTGGAATG 57.626 42.857 0.00 0.00 37.52 2.67
2222 2584 4.039488 TGATTGCAAAGTTGAGCTTGGAAT 59.961 37.500 1.71 0.77 37.52 3.01
2223 2585 3.384146 TGATTGCAAAGTTGAGCTTGGAA 59.616 39.130 1.71 0.00 37.52 3.53
2224 2586 2.957680 TGATTGCAAAGTTGAGCTTGGA 59.042 40.909 1.71 0.00 37.52 3.53
2225 2587 3.374220 TGATTGCAAAGTTGAGCTTGG 57.626 42.857 1.71 0.00 37.52 3.61
2226 2588 4.807304 AGTTTGATTGCAAAGTTGAGCTTG 59.193 37.500 1.71 0.00 43.34 4.01
2227 2589 5.014808 AGTTTGATTGCAAAGTTGAGCTT 57.985 34.783 1.71 0.00 43.34 3.74
2228 2590 4.098349 TGAGTTTGATTGCAAAGTTGAGCT 59.902 37.500 1.71 0.00 45.25 4.09
2229 2591 4.207841 GTGAGTTTGATTGCAAAGTTGAGC 59.792 41.667 1.71 0.00 45.25 4.26
2230 2592 5.342433 TGTGAGTTTGATTGCAAAGTTGAG 58.658 37.500 1.71 0.00 45.25 3.02
2231 2593 5.321959 TGTGAGTTTGATTGCAAAGTTGA 57.678 34.783 1.71 0.00 45.25 3.18
2232 2594 5.005971 CCTTGTGAGTTTGATTGCAAAGTTG 59.994 40.000 1.71 0.00 45.25 3.16
2233 2595 5.111293 CCTTGTGAGTTTGATTGCAAAGTT 58.889 37.500 1.71 0.00 45.25 2.66
2235 2597 3.492011 GCCTTGTGAGTTTGATTGCAAAG 59.508 43.478 1.71 0.00 44.12 2.77
2236 2598 3.456280 GCCTTGTGAGTTTGATTGCAAA 58.544 40.909 1.71 0.00 41.47 3.68
2237 2599 2.224018 GGCCTTGTGAGTTTGATTGCAA 60.224 45.455 0.00 0.00 0.00 4.08
2238 2600 1.340889 GGCCTTGTGAGTTTGATTGCA 59.659 47.619 0.00 0.00 0.00 4.08
2239 2601 1.615392 AGGCCTTGTGAGTTTGATTGC 59.385 47.619 0.00 0.00 0.00 3.56
2240 2602 3.119708 GCTAGGCCTTGTGAGTTTGATTG 60.120 47.826 12.58 0.00 0.00 2.67
2241 2603 3.084786 GCTAGGCCTTGTGAGTTTGATT 58.915 45.455 12.58 0.00 0.00 2.57
2242 2604 2.040278 TGCTAGGCCTTGTGAGTTTGAT 59.960 45.455 12.58 0.00 0.00 2.57
2243 2605 1.419762 TGCTAGGCCTTGTGAGTTTGA 59.580 47.619 12.58 0.00 0.00 2.69
2244 2606 1.896220 TGCTAGGCCTTGTGAGTTTG 58.104 50.000 12.58 0.00 0.00 2.93
2245 2607 2.887151 ATGCTAGGCCTTGTGAGTTT 57.113 45.000 12.58 0.00 0.00 2.66
2246 2608 2.887151 AATGCTAGGCCTTGTGAGTT 57.113 45.000 12.58 0.00 0.00 3.01
2247 2609 2.571653 TGTAATGCTAGGCCTTGTGAGT 59.428 45.455 12.58 1.76 0.00 3.41
2248 2610 3.266510 TGTAATGCTAGGCCTTGTGAG 57.733 47.619 12.58 2.35 0.00 3.51
2249 2611 3.931907 ATGTAATGCTAGGCCTTGTGA 57.068 42.857 12.58 0.00 0.00 3.58
2250 2612 4.752101 GTCTATGTAATGCTAGGCCTTGTG 59.248 45.833 12.58 2.69 0.00 3.33
2251 2613 4.408921 TGTCTATGTAATGCTAGGCCTTGT 59.591 41.667 12.58 0.00 0.00 3.16
2252 2614 4.752101 GTGTCTATGTAATGCTAGGCCTTG 59.248 45.833 12.58 11.17 0.00 3.61
2253 2615 4.962155 GTGTCTATGTAATGCTAGGCCTT 58.038 43.478 12.58 0.00 0.00 4.35
2254 2616 4.608948 GTGTCTATGTAATGCTAGGCCT 57.391 45.455 11.78 11.78 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.