Multiple sequence alignment - TraesCS3A01G213200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G213200 chr3A 100.000 2956 0 0 1 2956 384686670 384683715 0.000000e+00 5459.0
1 TraesCS3A01G213200 chr3A 96.875 64 2 0 1540 1603 384685098 384685035 1.120000e-19 108.0
2 TraesCS3A01G213200 chr3A 96.875 64 2 0 1573 1636 384685131 384685068 1.120000e-19 108.0
3 TraesCS3A01G213200 chr3A 96.970 33 1 0 1538 1570 384685067 384685035 4.120000e-04 56.5
4 TraesCS3A01G213200 chr3A 96.970 33 1 0 1604 1636 384685133 384685101 4.120000e-04 56.5
5 TraesCS3A01G213200 chr3B 92.674 1365 68 9 1604 2956 385143051 385141707 0.000000e+00 1938.0
6 TraesCS3A01G213200 chr3B 95.091 713 23 5 864 1570 385143725 385143019 0.000000e+00 1112.0
7 TraesCS3A01G213200 chr3B 87.739 261 23 4 13 264 385144467 385144207 2.230000e-76 296.0
8 TraesCS3A01G213200 chr3B 95.495 111 4 1 719 829 385143836 385143727 3.030000e-40 176.0
9 TraesCS3A01G213200 chr3D 93.009 1273 49 17 932 2182 291963974 291962720 0.000000e+00 1821.0
10 TraesCS3A01G213200 chr3D 94.192 792 41 4 2166 2955 291954992 291954204 0.000000e+00 1203.0
11 TraesCS3A01G213200 chr3D 87.407 405 45 4 1 402 291965052 291964651 7.470000e-126 460.0
12 TraesCS3A01G213200 chr3D 83.731 461 38 17 400 834 291964729 291964280 4.590000e-108 401.0
13 TraesCS3A01G213200 chr3D 89.130 138 13 2 267 403 21444097 21444233 1.410000e-38 171.0
14 TraesCS3A01G213200 chr3D 95.556 90 4 0 840 929 291964113 291964024 8.540000e-31 145.0
15 TraesCS3A01G213200 chr3D 95.312 64 3 0 1573 1636 291963363 291963300 5.210000e-18 102.0
16 TraesCS3A01G213200 chr3D 96.970 33 1 0 1604 1636 291963365 291963333 4.120000e-04 56.5
17 TraesCS3A01G213200 chr7A 84.440 1009 124 16 1978 2956 512592754 512591749 0.000000e+00 963.0
18 TraesCS3A01G213200 chr7A 83.877 1011 128 21 1978 2956 106190634 106189627 0.000000e+00 931.0
19 TraesCS3A01G213200 chr2B 84.347 1003 121 15 1978 2956 239884113 239883123 0.000000e+00 950.0
20 TraesCS3A01G213200 chr2B 84.413 988 118 19 1978 2941 93788479 93789454 0.000000e+00 939.0
21 TraesCS3A01G213200 chr2B 83.848 1003 126 17 1978 2956 592470242 592469252 0.000000e+00 922.0
22 TraesCS3A01G213200 chr2B 84.597 818 91 17 2170 2956 423090339 423091152 0.000000e+00 780.0
23 TraesCS3A01G213200 chr2B 89.362 141 14 1 264 403 142654830 142654690 3.030000e-40 176.0
24 TraesCS3A01G213200 chr2B 88.034 117 14 0 400 516 481901277 481901161 3.970000e-29 139.0
25 TraesCS3A01G213200 chr7B 83.532 1008 123 22 1978 2956 745364874 745363881 0.000000e+00 902.0
26 TraesCS3A01G213200 chr7B 88.571 140 15 1 266 404 608403964 608404103 5.070000e-38 169.0
27 TraesCS3A01G213200 chr7B 87.288 118 15 0 399 516 716441570 716441687 5.140000e-28 135.0
28 TraesCS3A01G213200 chr2A 83.603 988 129 12 1978 2941 664975429 664976407 0.000000e+00 896.0
29 TraesCS3A01G213200 chr2A 83.152 1009 126 21 1978 2956 752547264 752546270 0.000000e+00 881.0
30 TraesCS3A01G213200 chr2A 82.937 1008 140 16 1978 2956 671175003 671176007 0.000000e+00 880.0
31 TraesCS3A01G213200 chr2A 87.069 116 15 0 401 516 42930593 42930708 6.650000e-27 132.0
32 TraesCS3A01G213200 chr2A 86.325 117 16 0 400 516 42960606 42960722 8.600000e-26 128.0
33 TraesCS3A01G213200 chr2A 85.124 121 17 1 396 516 24367950 24367831 4.000000e-24 122.0
34 TraesCS3A01G213200 chr4B 83.383 1005 127 21 1978 2956 42274453 42273463 0.000000e+00 894.0
35 TraesCS3A01G213200 chr4D 87.671 146 17 1 266 410 421970190 421970045 5.070000e-38 169.0
36 TraesCS3A01G213200 chr5D 88.406 138 16 0 266 403 242015402 242015539 1.820000e-37 167.0
37 TraesCS3A01G213200 chr5B 88.406 138 15 1 266 402 505606765 505606628 6.550000e-37 165.0
38 TraesCS3A01G213200 chr4A 87.770 139 17 0 264 402 738610237 738610099 2.360000e-36 163.0
39 TraesCS3A01G213200 chr2D 87.770 139 15 2 266 403 567787760 567787623 8.480000e-36 161.0
40 TraesCS3A01G213200 chr5A 87.179 117 15 0 400 516 280979727 280979843 1.850000e-27 134.0
41 TraesCS3A01G213200 chr5A 87.179 117 15 0 400 516 513965341 513965225 1.850000e-27 134.0
42 TraesCS3A01G213200 chr6A 85.470 117 17 0 400 516 614484108 614483992 4.000000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G213200 chr3A 384683715 384686670 2955 True 1157.600000 5459 97.53800 1 2956 5 chr3A.!!$R1 2955
1 TraesCS3A01G213200 chr3B 385141707 385144467 2760 True 880.500000 1938 92.74975 13 2956 4 chr3B.!!$R1 2943
2 TraesCS3A01G213200 chr3D 291954204 291954992 788 True 1203.000000 1203 94.19200 2166 2955 1 chr3D.!!$R1 789
3 TraesCS3A01G213200 chr3D 291962720 291965052 2332 True 497.583333 1821 91.99750 1 2182 6 chr3D.!!$R2 2181
4 TraesCS3A01G213200 chr7A 512591749 512592754 1005 True 963.000000 963 84.44000 1978 2956 1 chr7A.!!$R2 978
5 TraesCS3A01G213200 chr7A 106189627 106190634 1007 True 931.000000 931 83.87700 1978 2956 1 chr7A.!!$R1 978
6 TraesCS3A01G213200 chr2B 239883123 239884113 990 True 950.000000 950 84.34700 1978 2956 1 chr2B.!!$R2 978
7 TraesCS3A01G213200 chr2B 93788479 93789454 975 False 939.000000 939 84.41300 1978 2941 1 chr2B.!!$F1 963
8 TraesCS3A01G213200 chr2B 592469252 592470242 990 True 922.000000 922 83.84800 1978 2956 1 chr2B.!!$R4 978
9 TraesCS3A01G213200 chr2B 423090339 423091152 813 False 780.000000 780 84.59700 2170 2956 1 chr2B.!!$F2 786
10 TraesCS3A01G213200 chr7B 745363881 745364874 993 True 902.000000 902 83.53200 1978 2956 1 chr7B.!!$R1 978
11 TraesCS3A01G213200 chr2A 664975429 664976407 978 False 896.000000 896 83.60300 1978 2941 1 chr2A.!!$F3 963
12 TraesCS3A01G213200 chr2A 752546270 752547264 994 True 881.000000 881 83.15200 1978 2956 1 chr2A.!!$R2 978
13 TraesCS3A01G213200 chr2A 671175003 671176007 1004 False 880.000000 880 82.93700 1978 2956 1 chr2A.!!$F4 978
14 TraesCS3A01G213200 chr4B 42273463 42274453 990 True 894.000000 894 83.38300 1978 2956 1 chr4B.!!$R1 978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 329 0.179000 CAGTGGTATCCCCAGCTGAC 59.821 60.0 17.39 4.39 46.45 3.51 F
957 1396 0.179127 CATGAGTCTGGCGTGACGAT 60.179 55.0 10.10 0.00 41.47 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1371 1819 0.802222 CGTCGTTGTCGGCTCATCAT 60.802 55.0 0.00 0.00 39.73 2.45 R
2596 3092 0.530211 TGCAACCAAAGCATGCACAC 60.530 50.0 21.98 0.58 44.52 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.868997 CGAGTGTGGACATGCAACC 59.131 57.895 0.00 0.00 0.00 3.77
86 87 8.960591 CAAAATAGATCTTCTTTGAAAGCCCTA 58.039 33.333 17.97 0.00 31.77 3.53
92 93 4.348168 TCTTCTTTGAAAGCCCTAGTCACT 59.652 41.667 0.00 0.00 0.00 3.41
93 94 4.706842 TCTTTGAAAGCCCTAGTCACTT 57.293 40.909 0.00 0.00 0.00 3.16
98 100 2.861147 AAGCCCTAGTCACTTGAACC 57.139 50.000 0.00 0.00 0.00 3.62
99 101 1.729586 AGCCCTAGTCACTTGAACCA 58.270 50.000 0.00 0.00 0.00 3.67
100 102 1.348036 AGCCCTAGTCACTTGAACCAC 59.652 52.381 0.00 0.00 0.00 4.16
101 103 1.610886 GCCCTAGTCACTTGAACCACC 60.611 57.143 0.00 0.00 0.00 4.61
235 243 5.006386 GCTACAAATCCTCTCCCCATAATG 58.994 45.833 0.00 0.00 0.00 1.90
264 275 6.585695 ACAGTCAGGTAAGAAAGATAACGA 57.414 37.500 0.00 0.00 0.00 3.85
275 286 4.092968 AGAAAGATAACGATGCGAACCAAC 59.907 41.667 0.00 0.00 0.00 3.77
278 289 3.131577 AGATAACGATGCGAACCAACCTA 59.868 43.478 0.00 0.00 0.00 3.08
296 307 2.485479 CCTATGGTTGGATGGTTCGAGG 60.485 54.545 0.00 0.00 0.00 4.63
297 308 1.285280 ATGGTTGGATGGTTCGAGGA 58.715 50.000 0.00 0.00 0.00 3.71
299 310 1.271163 TGGTTGGATGGTTCGAGGAAC 60.271 52.381 0.00 0.00 41.32 3.62
310 321 1.481871 TCGAGGAACAGTGGTATCCC 58.518 55.000 7.92 0.00 33.55 3.85
311 322 0.464452 CGAGGAACAGTGGTATCCCC 59.536 60.000 7.92 0.00 33.55 4.81
315 326 0.912486 GAACAGTGGTATCCCCAGCT 59.088 55.000 0.00 0.00 46.45 4.24
318 329 0.179000 CAGTGGTATCCCCAGCTGAC 59.821 60.000 17.39 4.39 46.45 3.51
331 342 2.290896 CCAGCTGACCAGGGTTCAAATA 60.291 50.000 17.39 0.00 0.00 1.40
332 343 3.624777 CAGCTGACCAGGGTTCAAATAT 58.375 45.455 8.42 0.00 0.00 1.28
340 351 3.515104 CCAGGGTTCAAATATTGGTGCTT 59.485 43.478 0.00 0.00 0.00 3.91
349 360 8.330302 GTTCAAATATTGGTGCTTGCATTATTC 58.670 33.333 0.00 0.00 0.00 1.75
364 375 9.820725 CTTGCATTATTCCTGGATTTATTTCAA 57.179 29.630 0.00 0.79 0.00 2.69
379 390 0.732571 TTCAAGATTTCCGGCGATGC 59.267 50.000 9.30 0.00 0.00 3.91
380 391 0.392327 TCAAGATTTCCGGCGATGCA 60.392 50.000 9.30 0.00 0.00 3.96
381 392 0.664761 CAAGATTTCCGGCGATGCAT 59.335 50.000 9.30 0.00 0.00 3.96
382 393 1.066002 CAAGATTTCCGGCGATGCATT 59.934 47.619 9.30 0.00 0.00 3.56
383 394 1.392589 AGATTTCCGGCGATGCATTT 58.607 45.000 9.30 0.00 0.00 2.32
384 395 1.750778 AGATTTCCGGCGATGCATTTT 59.249 42.857 9.30 0.00 0.00 1.82
385 396 2.119457 GATTTCCGGCGATGCATTTTC 58.881 47.619 9.30 0.00 0.00 2.29
386 397 0.179176 TTTCCGGCGATGCATTTTCG 60.179 50.000 9.30 1.43 39.55 3.46
387 398 1.987704 TTCCGGCGATGCATTTTCGG 61.988 55.000 21.61 21.61 37.10 4.30
388 399 2.760159 CCGGCGATGCATTTTCGGT 61.760 57.895 20.23 0.00 37.10 4.69
389 400 1.583451 CGGCGATGCATTTTCGGTG 60.583 57.895 0.00 0.00 37.10 4.94
390 401 1.226660 GGCGATGCATTTTCGGTGG 60.227 57.895 9.99 0.00 37.10 4.61
391 402 1.226660 GCGATGCATTTTCGGTGGG 60.227 57.895 9.99 0.00 37.10 4.61
392 403 1.653094 GCGATGCATTTTCGGTGGGA 61.653 55.000 9.99 0.00 37.10 4.37
393 404 0.378257 CGATGCATTTTCGGTGGGAG 59.622 55.000 0.00 0.00 33.05 4.30
394 405 1.750193 GATGCATTTTCGGTGGGAGA 58.250 50.000 0.00 0.00 0.00 3.71
395 406 2.091541 GATGCATTTTCGGTGGGAGAA 58.908 47.619 0.00 0.00 0.00 2.87
396 407 1.533625 TGCATTTTCGGTGGGAGAAG 58.466 50.000 0.00 0.00 0.00 2.85
397 408 1.073125 TGCATTTTCGGTGGGAGAAGA 59.927 47.619 0.00 0.00 0.00 2.87
398 409 2.290896 TGCATTTTCGGTGGGAGAAGAT 60.291 45.455 0.00 0.00 0.00 2.40
399 410 2.098117 GCATTTTCGGTGGGAGAAGATG 59.902 50.000 5.46 5.46 40.80 2.90
400 411 3.347216 CATTTTCGGTGGGAGAAGATGT 58.653 45.455 2.54 0.00 36.24 3.06
401 412 3.502123 TTTTCGGTGGGAGAAGATGTT 57.498 42.857 0.00 0.00 0.00 2.71
402 413 2.762535 TTCGGTGGGAGAAGATGTTC 57.237 50.000 0.00 0.00 0.00 3.18
403 414 1.639722 TCGGTGGGAGAAGATGTTCA 58.360 50.000 5.28 0.00 34.82 3.18
404 415 1.974957 TCGGTGGGAGAAGATGTTCAA 59.025 47.619 5.28 0.00 34.82 2.69
405 416 2.370519 TCGGTGGGAGAAGATGTTCAAA 59.629 45.455 5.28 0.00 34.82 2.69
406 417 3.009033 TCGGTGGGAGAAGATGTTCAAAT 59.991 43.478 5.28 0.00 34.82 2.32
407 418 4.224147 TCGGTGGGAGAAGATGTTCAAATA 59.776 41.667 5.28 0.00 34.82 1.40
408 419 5.104527 TCGGTGGGAGAAGATGTTCAAATAT 60.105 40.000 5.28 0.00 34.82 1.28
409 420 5.590259 CGGTGGGAGAAGATGTTCAAATATT 59.410 40.000 5.28 0.00 34.82 1.28
410 421 6.458751 CGGTGGGAGAAGATGTTCAAATATTG 60.459 42.308 5.28 0.00 34.82 1.90
411 422 6.183360 GGTGGGAGAAGATGTTCAAATATTGG 60.183 42.308 5.28 0.00 34.82 3.16
412 423 6.378280 GTGGGAGAAGATGTTCAAATATTGGT 59.622 38.462 5.28 0.00 34.82 3.67
413 424 6.377996 TGGGAGAAGATGTTCAAATATTGGTG 59.622 38.462 5.28 0.00 34.82 4.17
414 425 6.268566 GGAGAAGATGTTCAAATATTGGTGC 58.731 40.000 5.28 0.00 34.82 5.01
415 426 6.096001 GGAGAAGATGTTCAAATATTGGTGCT 59.904 38.462 5.28 0.00 34.82 4.40
416 427 7.363268 GGAGAAGATGTTCAAATATTGGTGCTT 60.363 37.037 5.28 0.00 34.82 3.91
417 428 7.318141 AGAAGATGTTCAAATATTGGTGCTTG 58.682 34.615 5.28 0.00 34.82 4.01
418 429 5.413499 AGATGTTCAAATATTGGTGCTTGC 58.587 37.500 0.00 0.00 0.00 4.01
419 430 4.597404 TGTTCAAATATTGGTGCTTGCA 57.403 36.364 0.00 0.00 0.00 4.08
420 431 5.149973 TGTTCAAATATTGGTGCTTGCAT 57.850 34.783 0.00 0.00 0.00 3.96
421 432 5.549347 TGTTCAAATATTGGTGCTTGCATT 58.451 33.333 0.00 0.00 0.00 3.56
422 433 6.695429 TGTTCAAATATTGGTGCTTGCATTA 58.305 32.000 0.00 0.00 0.00 1.90
423 434 7.329499 TGTTCAAATATTGGTGCTTGCATTAT 58.671 30.769 0.00 0.00 0.00 1.28
424 435 7.823310 TGTTCAAATATTGGTGCTTGCATTATT 59.177 29.630 0.00 0.00 0.00 1.40
425 436 8.330302 GTTCAAATATTGGTGCTTGCATTATTC 58.670 33.333 0.00 0.00 0.00 1.75
426 437 6.985645 TCAAATATTGGTGCTTGCATTATTCC 59.014 34.615 0.00 0.00 0.00 3.01
427 438 6.736110 AATATTGGTGCTTGCATTATTCCT 57.264 33.333 0.00 0.00 0.00 3.36
428 439 3.872511 TTGGTGCTTGCATTATTCCTG 57.127 42.857 0.00 0.00 0.00 3.86
429 440 3.084536 TGGTGCTTGCATTATTCCTGA 57.915 42.857 0.00 0.00 0.00 3.86
430 441 3.429492 TGGTGCTTGCATTATTCCTGAA 58.571 40.909 0.00 0.00 0.00 3.02
431 442 4.025360 TGGTGCTTGCATTATTCCTGAAT 58.975 39.130 0.00 0.00 34.93 2.57
432 443 4.467082 TGGTGCTTGCATTATTCCTGAATT 59.533 37.500 0.00 0.00 32.50 2.17
433 444 5.046448 TGGTGCTTGCATTATTCCTGAATTT 60.046 36.000 0.00 0.00 32.50 1.82
434 445 6.154192 TGGTGCTTGCATTATTCCTGAATTTA 59.846 34.615 0.00 0.00 32.50 1.40
435 446 7.147689 TGGTGCTTGCATTATTCCTGAATTTAT 60.148 33.333 0.00 0.00 32.50 1.40
436 447 7.712205 GGTGCTTGCATTATTCCTGAATTTATT 59.288 33.333 0.00 0.00 32.50 1.40
437 448 9.101655 GTGCTTGCATTATTCCTGAATTTATTT 57.898 29.630 0.00 0.00 32.50 1.40
438 449 9.316730 TGCTTGCATTATTCCTGAATTTATTTC 57.683 29.630 0.00 0.00 34.72 2.17
439 450 9.316730 GCTTGCATTATTCCTGAATTTATTTCA 57.683 29.630 0.00 0.00 42.09 2.69
448 459 9.807649 ATTCCTGAATTTATTTCAAGATTTCCG 57.192 29.630 0.00 0.00 43.64 4.30
449 460 7.771183 TCCTGAATTTATTTCAAGATTTCCGG 58.229 34.615 0.00 0.00 43.64 5.14
450 461 6.476706 CCTGAATTTATTTCAAGATTTCCGGC 59.523 38.462 0.00 0.00 43.64 6.13
451 462 6.033341 TGAATTTATTTCAAGATTTCCGGCG 58.967 36.000 0.00 0.00 41.38 6.46
452 463 5.828299 ATTTATTTCAAGATTTCCGGCGA 57.172 34.783 9.30 0.00 0.00 5.54
453 464 5.828299 TTTATTTCAAGATTTCCGGCGAT 57.172 34.783 9.30 0.00 0.00 4.58
454 465 6.928979 TTTATTTCAAGATTTCCGGCGATA 57.071 33.333 9.30 0.00 0.00 2.92
455 466 4.813296 ATTTCAAGATTTCCGGCGATAC 57.187 40.909 9.30 0.00 0.00 2.24
478 489 2.762535 TTCGGTGGGAGAAGATGTTC 57.237 50.000 0.00 0.00 0.00 3.18
479 490 1.938585 TCGGTGGGAGAAGATGTTCT 58.061 50.000 4.50 4.50 46.32 3.01
493 504 2.347697 TGTTCTCATTGACGACGAGG 57.652 50.000 0.00 0.00 0.00 4.63
509 520 1.534175 CGAGGCGTCTACCATCACTTC 60.534 57.143 4.69 0.00 0.00 3.01
510 521 0.456221 AGGCGTCTACCATCACTTCG 59.544 55.000 0.00 0.00 0.00 3.79
514 525 3.504863 GCGTCTACCATCACTTCGTAAA 58.495 45.455 0.00 0.00 0.00 2.01
523 534 5.047847 CCATCACTTCGTAAATATGACCGT 58.952 41.667 0.00 0.00 0.00 4.83
530 541 3.679025 TCGTAAATATGACCGTTTGCGTT 59.321 39.130 7.86 0.00 41.79 4.84
534 545 5.359716 AAATATGACCGTTTGCGTTTGTA 57.640 34.783 0.00 0.00 36.15 2.41
539 550 1.328374 ACCGTTTGCGTTTGTACTGTC 59.672 47.619 0.00 0.00 36.15 3.51
543 554 4.260294 CCGTTTGCGTTTGTACTGTCTTAA 60.260 41.667 0.00 0.00 36.15 1.85
591 627 4.116961 GTGCCAAAGAAGTAAACAAACCC 58.883 43.478 0.00 0.00 0.00 4.11
637 834 4.456566 ACGGTATGTTAGCAAATCCGTTTT 59.543 37.500 15.80 0.66 42.07 2.43
667 865 3.723348 GCTCCAACGCAACGGTCC 61.723 66.667 0.00 0.00 0.00 4.46
697 895 3.632333 ACGAGAGAGAGAGAGAGAGAGA 58.368 50.000 0.00 0.00 0.00 3.10
698 896 3.634448 ACGAGAGAGAGAGAGAGAGAGAG 59.366 52.174 0.00 0.00 0.00 3.20
699 897 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
700 898 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
701 899 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
702 900 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
703 901 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
704 902 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
705 903 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
706 904 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
713 911 5.091261 AGAGAGAGAGAGAGAGTCTTCAC 57.909 47.826 0.00 0.00 34.71 3.18
834 1065 4.363990 CGCGCTCCTGCCCGATAT 62.364 66.667 5.56 0.00 42.41 1.63
835 1066 2.970639 GCGCTCCTGCCCGATATA 59.029 61.111 0.00 0.00 35.36 0.86
836 1067 1.517832 GCGCTCCTGCCCGATATAT 59.482 57.895 0.00 0.00 35.36 0.86
837 1068 0.744874 GCGCTCCTGCCCGATATATA 59.255 55.000 0.00 0.00 35.36 0.86
854 1246 1.011333 ATACGTACAATGCAACGGCC 58.989 50.000 12.81 0.00 43.25 6.13
860 1252 2.598394 AATGCAACGGCCACAGCT 60.598 55.556 2.24 0.00 40.13 4.24
957 1396 0.179127 CATGAGTCTGGCGTGACGAT 60.179 55.000 10.10 0.00 41.47 3.73
961 1400 1.868251 GTCTGGCGTGACGATCGAC 60.868 63.158 24.34 17.11 36.80 4.20
976 1415 3.685756 CGATCGACCCTCTCTATAAGACC 59.314 52.174 10.26 0.00 0.00 3.85
1022 1467 1.748493 GCTACTCCAGAGACCAGAGTG 59.252 57.143 0.70 0.00 40.93 3.51
1326 1774 1.814394 TCAGATTGGCACAGTTCATGC 59.186 47.619 0.00 0.00 42.39 4.06
1367 1815 0.809636 CAACCACTGCACTCACGTCA 60.810 55.000 0.00 0.00 0.00 4.35
1368 1816 0.810031 AACCACTGCACTCACGTCAC 60.810 55.000 0.00 0.00 0.00 3.67
1369 1817 2.302952 CCACTGCACTCACGTCACG 61.303 63.158 0.00 0.00 0.00 4.35
1370 1818 1.588932 CACTGCACTCACGTCACGT 60.589 57.895 0.00 0.00 42.36 4.49
1371 1819 0.317519 CACTGCACTCACGTCACGTA 60.318 55.000 0.41 0.00 38.32 3.57
1736 2184 1.201825 GCGTCTGCGTGACAAGAAC 59.798 57.895 9.74 0.00 45.60 3.01
1742 2190 0.176910 TGCGTGACAAGAACACCTCA 59.823 50.000 0.00 0.00 35.17 3.86
1761 2209 2.503375 CGTACGGCCGTGACAGTC 60.503 66.667 40.02 20.08 0.00 3.51
1899 2361 4.099113 GTCTTAGGCTACTTGTAACGGGAT 59.901 45.833 0.00 0.00 0.00 3.85
1963 2425 4.750598 GCTAACGGAGATTAAATCTGGTCC 59.249 45.833 0.00 0.00 40.38 4.46
1968 2430 4.757149 CGGAGATTAAATCTGGTCCCATTC 59.243 45.833 0.00 0.00 40.38 2.67
1969 2431 5.687441 CGGAGATTAAATCTGGTCCCATTCA 60.687 44.000 0.00 0.00 40.38 2.57
1970 2432 5.767168 GGAGATTAAATCTGGTCCCATTCAG 59.233 44.000 0.00 0.00 40.38 3.02
1971 2433 6.332976 AGATTAAATCTGGTCCCATTCAGT 57.667 37.500 0.00 0.00 38.44 3.41
1972 2434 6.125029 AGATTAAATCTGGTCCCATTCAGTG 58.875 40.000 0.00 0.00 38.44 3.66
1973 2435 2.134789 AATCTGGTCCCATTCAGTGC 57.865 50.000 0.00 0.00 33.13 4.40
1994 2456 4.647564 CCAGTGGGCCATCTAGAATTAT 57.352 45.455 10.70 0.00 0.00 1.28
2052 2514 5.012664 TGGACAAGGCTGTATTCTTGAGTTA 59.987 40.000 9.63 0.00 41.94 2.24
2071 2533 9.533831 TTGAGTTAGGATATATGCACTAGATGA 57.466 33.333 7.02 0.00 0.00 2.92
2113 2576 2.172851 AAACCGCGGTCAACTATGAA 57.827 45.000 34.29 0.00 37.30 2.57
2148 2611 2.627217 GGTATGAGGAGGAAGACCCACT 60.627 54.545 0.00 0.00 37.41 4.00
2172 2635 9.498176 ACTTCTATACGTTGGATTTAAACAGTT 57.502 29.630 0.00 0.00 0.00 3.16
2271 2735 2.628657 AGCTCACTCTTAGTGTTTCCGT 59.371 45.455 6.93 0.00 46.03 4.69
2345 2829 4.034394 GCTGACAGTGATGATATTTTGCGA 59.966 41.667 3.99 0.00 0.00 5.10
2375 2860 3.867493 GGCCAAGAAAATGCAAGATAAGC 59.133 43.478 0.00 0.00 0.00 3.09
2596 3092 2.656947 TGGGAGAAGGTGAAAACCTG 57.343 50.000 0.00 0.00 40.59 4.00
2610 3106 0.390124 AACCTGTGTGCATGCTTTGG 59.610 50.000 20.33 15.21 0.00 3.28
2641 3137 6.122277 AGTACAAAGCTATGTATGCACCAAT 58.878 36.000 0.00 0.00 38.03 3.16
2687 3183 4.708177 CTCCATAATCCGAACCAACTCAT 58.292 43.478 0.00 0.00 0.00 2.90
2733 3230 4.338118 TGCCTCGGATAAATAAAAAGCTGG 59.662 41.667 0.00 0.00 0.00 4.85
2755 3255 3.132111 GGAGTTGTTGTTGGTGGTGAAAT 59.868 43.478 0.00 0.00 0.00 2.17
2811 3312 8.896744 CCTACATGAAGAGAATGAAGCAAATAA 58.103 33.333 0.00 0.00 0.00 1.40
2818 3319 9.448294 GAAGAGAATGAAGCAAATAATGATGAC 57.552 33.333 0.00 0.00 0.00 3.06
2893 3395 5.357257 GTTAGGATGGTCGTGATGTGTTAT 58.643 41.667 0.00 0.00 0.00 1.89
2896 3398 6.174720 AGGATGGTCGTGATGTGTTATATT 57.825 37.500 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.061752 AGAAGTTTTGAAAATATCCGACTCG 57.938 36.000 0.00 0.00 0.00 4.18
73 74 4.389374 TCAAGTGACTAGGGCTTTCAAAG 58.611 43.478 0.00 0.00 0.00 2.77
86 87 5.241403 TCATATTGGTGGTTCAAGTGACT 57.759 39.130 0.00 0.00 0.00 3.41
92 93 7.560368 AGTTTTGTTTCATATTGGTGGTTCAA 58.440 30.769 0.00 0.00 0.00 2.69
93 94 7.118496 AGTTTTGTTTCATATTGGTGGTTCA 57.882 32.000 0.00 0.00 0.00 3.18
174 178 2.675423 AGTCCCTCGTGCGTGCTA 60.675 61.111 0.00 0.00 0.00 3.49
254 265 3.126343 GGTTGGTTCGCATCGTTATCTTT 59.874 43.478 0.00 0.00 0.00 2.52
256 267 2.093658 AGGTTGGTTCGCATCGTTATCT 60.094 45.455 0.00 0.00 0.00 1.98
259 270 3.191669 CATAGGTTGGTTCGCATCGTTA 58.808 45.455 0.00 0.00 0.00 3.18
275 286 2.485479 CCTCGAACCATCCAACCATAGG 60.485 54.545 0.00 0.00 0.00 2.57
278 289 1.285280 TCCTCGAACCATCCAACCAT 58.715 50.000 0.00 0.00 0.00 3.55
288 299 2.418334 GGATACCACTGTTCCTCGAACC 60.418 54.545 2.26 0.00 41.35 3.62
310 321 0.178992 TTTGAACCCTGGTCAGCTGG 60.179 55.000 15.13 0.00 0.00 4.85
311 322 1.915141 ATTTGAACCCTGGTCAGCTG 58.085 50.000 7.63 7.63 0.00 4.24
315 326 4.085733 CACCAATATTTGAACCCTGGTCA 58.914 43.478 0.00 0.00 34.97 4.02
318 329 3.099141 AGCACCAATATTTGAACCCTGG 58.901 45.455 0.00 0.00 0.00 4.45
331 342 3.133362 CCAGGAATAATGCAAGCACCAAT 59.867 43.478 0.00 0.00 0.00 3.16
332 343 2.496871 CCAGGAATAATGCAAGCACCAA 59.503 45.455 0.00 0.00 0.00 3.67
340 351 9.199645 TCTTGAAATAAATCCAGGAATAATGCA 57.800 29.630 0.00 0.00 0.00 3.96
349 360 6.507023 CCGGAAATCTTGAAATAAATCCAGG 58.493 40.000 0.00 0.00 0.00 4.45
364 375 1.392589 AAATGCATCGCCGGAAATCT 58.607 45.000 5.05 0.00 0.00 2.40
379 390 3.347216 ACATCTTCTCCCACCGAAAATG 58.653 45.455 0.00 0.00 0.00 2.32
380 391 3.721087 ACATCTTCTCCCACCGAAAAT 57.279 42.857 0.00 0.00 0.00 1.82
381 392 3.181449 TGAACATCTTCTCCCACCGAAAA 60.181 43.478 0.00 0.00 0.00 2.29
382 393 2.370519 TGAACATCTTCTCCCACCGAAA 59.629 45.455 0.00 0.00 0.00 3.46
383 394 1.974957 TGAACATCTTCTCCCACCGAA 59.025 47.619 0.00 0.00 0.00 4.30
384 395 1.639722 TGAACATCTTCTCCCACCGA 58.360 50.000 0.00 0.00 0.00 4.69
385 396 2.472695 TTGAACATCTTCTCCCACCG 57.527 50.000 0.00 0.00 0.00 4.94
386 397 6.183360 CCAATATTTGAACATCTTCTCCCACC 60.183 42.308 0.00 0.00 0.00 4.61
387 398 6.378280 ACCAATATTTGAACATCTTCTCCCAC 59.622 38.462 0.00 0.00 0.00 4.61
388 399 6.377996 CACCAATATTTGAACATCTTCTCCCA 59.622 38.462 0.00 0.00 0.00 4.37
389 400 6.681368 GCACCAATATTTGAACATCTTCTCCC 60.681 42.308 0.00 0.00 0.00 4.30
390 401 6.096001 AGCACCAATATTTGAACATCTTCTCC 59.904 38.462 0.00 0.00 0.00 3.71
391 402 7.093322 AGCACCAATATTTGAACATCTTCTC 57.907 36.000 0.00 0.00 0.00 2.87
392 403 7.318141 CAAGCACCAATATTTGAACATCTTCT 58.682 34.615 0.00 0.00 0.00 2.85
393 404 6.035327 GCAAGCACCAATATTTGAACATCTTC 59.965 38.462 0.00 0.00 0.00 2.87
394 405 5.870978 GCAAGCACCAATATTTGAACATCTT 59.129 36.000 0.00 0.00 0.00 2.40
395 406 5.047164 TGCAAGCACCAATATTTGAACATCT 60.047 36.000 0.00 0.00 0.00 2.90
396 407 5.170021 TGCAAGCACCAATATTTGAACATC 58.830 37.500 0.00 0.00 0.00 3.06
397 408 5.149973 TGCAAGCACCAATATTTGAACAT 57.850 34.783 0.00 0.00 0.00 2.71
398 409 4.597404 TGCAAGCACCAATATTTGAACA 57.403 36.364 0.00 0.00 0.00 3.18
399 410 7.775397 ATAATGCAAGCACCAATATTTGAAC 57.225 32.000 0.00 0.00 0.00 3.18
400 411 7.495279 GGAATAATGCAAGCACCAATATTTGAA 59.505 33.333 0.00 0.00 0.00 2.69
401 412 6.985645 GGAATAATGCAAGCACCAATATTTGA 59.014 34.615 0.00 0.00 0.00 2.69
402 413 6.987992 AGGAATAATGCAAGCACCAATATTTG 59.012 34.615 0.00 0.00 0.00 2.32
403 414 6.987992 CAGGAATAATGCAAGCACCAATATTT 59.012 34.615 0.00 0.00 0.00 1.40
404 415 6.324512 TCAGGAATAATGCAAGCACCAATATT 59.675 34.615 0.00 0.94 0.00 1.28
405 416 5.834742 TCAGGAATAATGCAAGCACCAATAT 59.165 36.000 0.00 0.00 0.00 1.28
406 417 5.199723 TCAGGAATAATGCAAGCACCAATA 58.800 37.500 0.00 0.00 0.00 1.90
407 418 4.025360 TCAGGAATAATGCAAGCACCAAT 58.975 39.130 0.00 0.00 0.00 3.16
408 419 3.429492 TCAGGAATAATGCAAGCACCAA 58.571 40.909 0.00 0.00 0.00 3.67
409 420 3.084536 TCAGGAATAATGCAAGCACCA 57.915 42.857 0.00 0.00 0.00 4.17
410 421 4.660789 ATTCAGGAATAATGCAAGCACC 57.339 40.909 0.00 0.00 0.00 5.01
411 422 8.652810 AATAAATTCAGGAATAATGCAAGCAC 57.347 30.769 0.00 0.00 0.00 4.40
412 423 9.316730 GAAATAAATTCAGGAATAATGCAAGCA 57.683 29.630 0.00 0.00 37.99 3.91
413 424 9.316730 TGAAATAAATTCAGGAATAATGCAAGC 57.683 29.630 0.00 0.00 43.08 4.01
427 438 6.033341 CGCCGGAAATCTTGAAATAAATTCA 58.967 36.000 5.05 0.00 46.22 2.57
428 439 6.262601 TCGCCGGAAATCTTGAAATAAATTC 58.737 36.000 5.05 0.00 38.60 2.17
429 440 6.202516 TCGCCGGAAATCTTGAAATAAATT 57.797 33.333 5.05 0.00 0.00 1.82
430 441 5.828299 TCGCCGGAAATCTTGAAATAAAT 57.172 34.783 5.05 0.00 0.00 1.40
431 442 5.828299 ATCGCCGGAAATCTTGAAATAAA 57.172 34.783 5.05 0.00 0.00 1.40
432 443 5.050634 CGTATCGCCGGAAATCTTGAAATAA 60.051 40.000 5.05 0.00 0.00 1.40
433 444 4.446385 CGTATCGCCGGAAATCTTGAAATA 59.554 41.667 5.05 0.00 0.00 1.40
434 445 3.247648 CGTATCGCCGGAAATCTTGAAAT 59.752 43.478 5.05 0.00 0.00 2.17
435 446 2.605818 CGTATCGCCGGAAATCTTGAAA 59.394 45.455 5.05 0.00 0.00 2.69
436 447 2.198406 CGTATCGCCGGAAATCTTGAA 58.802 47.619 5.05 0.00 0.00 2.69
437 448 1.135527 ACGTATCGCCGGAAATCTTGA 59.864 47.619 5.05 0.00 0.00 3.02
438 449 1.567504 ACGTATCGCCGGAAATCTTG 58.432 50.000 5.05 0.00 0.00 3.02
439 450 2.304751 AACGTATCGCCGGAAATCTT 57.695 45.000 5.05 0.00 0.00 2.40
440 451 2.304751 AAACGTATCGCCGGAAATCT 57.695 45.000 5.05 0.00 0.00 2.40
441 452 2.595881 CGAAAACGTATCGCCGGAAATC 60.596 50.000 5.05 0.00 33.07 2.17
442 453 1.325338 CGAAAACGTATCGCCGGAAAT 59.675 47.619 5.05 0.00 33.07 2.17
443 454 0.714994 CGAAAACGTATCGCCGGAAA 59.285 50.000 5.05 0.00 33.07 3.13
444 455 1.077645 CCGAAAACGTATCGCCGGAA 61.078 55.000 5.05 0.00 39.31 4.30
445 456 1.516821 CCGAAAACGTATCGCCGGA 60.517 57.895 5.05 0.00 39.31 5.14
446 457 1.806758 ACCGAAAACGTATCGCCGG 60.807 57.895 15.85 13.55 42.30 6.13
447 458 1.342473 CACCGAAAACGTATCGCCG 59.658 57.895 15.85 7.88 38.93 6.46
448 459 1.698714 CCCACCGAAAACGTATCGCC 61.699 60.000 15.85 0.00 38.93 5.54
449 460 0.737019 TCCCACCGAAAACGTATCGC 60.737 55.000 15.85 0.00 38.93 4.58
450 461 1.135315 TCTCCCACCGAAAACGTATCG 60.135 52.381 14.69 14.69 39.92 2.92
451 462 2.660189 TCTCCCACCGAAAACGTATC 57.340 50.000 0.00 0.00 0.00 2.24
452 463 2.564062 TCTTCTCCCACCGAAAACGTAT 59.436 45.455 0.00 0.00 0.00 3.06
453 464 1.962807 TCTTCTCCCACCGAAAACGTA 59.037 47.619 0.00 0.00 0.00 3.57
454 465 0.754472 TCTTCTCCCACCGAAAACGT 59.246 50.000 0.00 0.00 0.00 3.99
455 466 1.732259 CATCTTCTCCCACCGAAAACG 59.268 52.381 0.00 0.00 0.00 3.60
470 481 4.169508 CTCGTCGTCAATGAGAACATCTT 58.830 43.478 0.00 0.00 42.75 2.40
478 489 1.154016 ACGCCTCGTCGTCAATGAG 60.154 57.895 0.00 0.00 38.44 2.90
479 490 2.959372 ACGCCTCGTCGTCAATGA 59.041 55.556 0.00 0.00 38.44 2.57
493 504 2.838386 TACGAAGTGATGGTAGACGC 57.162 50.000 0.00 0.00 45.73 5.19
496 507 7.431249 GGTCATATTTACGAAGTGATGGTAGA 58.569 38.462 0.00 0.00 45.73 2.59
501 512 6.583912 AACGGTCATATTTACGAAGTGATG 57.416 37.500 0.00 0.00 45.73 3.07
502 513 6.456449 GCAAACGGTCATATTTACGAAGTGAT 60.456 38.462 0.00 0.00 45.73 3.06
504 515 5.019498 GCAAACGGTCATATTTACGAAGTG 58.981 41.667 0.00 0.00 45.73 3.16
509 520 3.644805 ACGCAAACGGTCATATTTACG 57.355 42.857 0.00 0.00 46.04 3.18
510 521 5.148568 ACAAACGCAAACGGTCATATTTAC 58.851 37.500 0.00 0.00 39.25 2.01
514 525 3.998341 AGTACAAACGCAAACGGTCATAT 59.002 39.130 0.00 0.00 39.25 1.78
637 834 3.789459 GCGTTGGAGCGTTGAGTTTTTAA 60.789 43.478 0.00 0.00 0.00 1.52
667 865 2.603110 CTCTCTCTCTCGTCTCGAACAG 59.397 54.545 0.00 0.00 34.74 3.16
697 895 1.340600 CCCGGTGAAGACTCTCTCTCT 60.341 57.143 0.00 0.00 0.00 3.10
698 896 1.099689 CCCGGTGAAGACTCTCTCTC 58.900 60.000 0.00 0.00 0.00 3.20
699 897 0.699399 TCCCGGTGAAGACTCTCTCT 59.301 55.000 0.00 0.00 0.00 3.10
700 898 1.546961 TTCCCGGTGAAGACTCTCTC 58.453 55.000 0.00 0.00 0.00 3.20
701 899 3.768008 TTCCCGGTGAAGACTCTCT 57.232 52.632 0.00 0.00 0.00 3.10
713 911 2.685850 AACGTTAGGATTCTTCCCGG 57.314 50.000 0.00 0.00 43.76 5.73
829 1060 5.498069 GCCGTTGCATTGTACGTATATATCG 60.498 44.000 7.78 0.00 36.09 2.92
834 1065 2.203401 GGCCGTTGCATTGTACGTATA 58.797 47.619 7.78 0.00 40.13 1.47
835 1066 1.011333 GGCCGTTGCATTGTACGTAT 58.989 50.000 7.78 0.00 40.13 3.06
836 1067 0.320508 TGGCCGTTGCATTGTACGTA 60.321 50.000 7.78 0.00 40.13 3.57
837 1068 1.598407 TGGCCGTTGCATTGTACGT 60.598 52.632 7.78 0.00 40.13 3.57
854 1246 1.195448 CGGTTGCTGTTTCTAGCTGTG 59.805 52.381 0.00 0.00 44.01 3.66
860 1252 1.225855 CAGTGCGGTTGCTGTTTCTA 58.774 50.000 0.00 0.00 43.34 2.10
917 1309 3.280295 GAGTGTCTACGGGAGAGATGAA 58.720 50.000 0.00 0.00 33.72 2.57
918 1310 2.238898 TGAGTGTCTACGGGAGAGATGA 59.761 50.000 0.00 0.00 33.72 2.92
957 1396 3.434739 GGTGGTCTTATAGAGAGGGTCGA 60.435 52.174 0.00 0.00 34.31 4.20
961 1400 1.614413 GCGGTGGTCTTATAGAGAGGG 59.386 57.143 0.00 0.00 34.31 4.30
995 1434 2.017782 GTCTCTGGAGTAGCGTGATCA 58.982 52.381 0.00 0.00 0.00 2.92
1004 1449 3.622704 GCTACACTCTGGTCTCTGGAGTA 60.623 52.174 0.00 0.00 38.12 2.59
1123 1571 2.928801 TGCAGTCCTTGAAGCAGTAA 57.071 45.000 0.00 0.00 32.48 2.24
1241 1689 4.545706 GCATCCCATGTCGCCGGA 62.546 66.667 5.05 0.00 0.00 5.14
1326 1774 2.574322 GCATTACTAATTCATGGCGCG 58.426 47.619 0.00 0.00 0.00 6.86
1367 1815 1.797713 CGTTGTCGGCTCATCATACGT 60.798 52.381 0.00 0.00 0.00 3.57
1368 1816 0.846401 CGTTGTCGGCTCATCATACG 59.154 55.000 0.00 0.00 0.00 3.06
1369 1817 1.852895 GTCGTTGTCGGCTCATCATAC 59.147 52.381 0.00 0.00 38.74 2.39
1370 1818 1.533129 CGTCGTTGTCGGCTCATCATA 60.533 52.381 0.00 0.00 39.73 2.15
1371 1819 0.802222 CGTCGTTGTCGGCTCATCAT 60.802 55.000 0.00 0.00 39.73 2.45
1453 1901 2.664851 TTGGTCTTGCAGCCGTCG 60.665 61.111 0.00 0.00 0.00 5.12
1591 2039 1.915078 AAGGAAGGGCGTCATCTGGG 61.915 60.000 0.00 0.00 0.00 4.45
1624 2072 2.280389 CGGACCGCATCATCTGGG 60.280 66.667 0.00 0.00 37.54 4.45
1693 2141 2.081425 GAGCAGCGTGGATCTCCGAT 62.081 60.000 8.43 0.00 39.43 4.18
1742 2190 4.415332 CTGTCACGGCCGTACGCT 62.415 66.667 33.70 4.44 37.74 5.07
1899 2361 7.578852 CGTACACTATATTGATACGGAGAACA 58.421 38.462 13.47 0.00 36.00 3.18
1963 2425 4.007457 CCCACTGGCACTGAATGG 57.993 61.111 0.00 0.00 0.00 3.16
1973 2435 4.647564 ATAATTCTAGATGGCCCACTGG 57.352 45.455 0.00 1.32 0.00 4.00
2005 2467 6.015940 CCACCTTTTCTAACTCAGCAAATTCT 60.016 38.462 0.00 0.00 0.00 2.40
2009 2471 4.578928 GTCCACCTTTTCTAACTCAGCAAA 59.421 41.667 0.00 0.00 0.00 3.68
2113 2576 6.663523 CCTCCTCATACCCTACAAACATTTTT 59.336 38.462 0.00 0.00 0.00 1.94
2126 2589 1.344087 TGGGTCTTCCTCCTCATACCC 60.344 57.143 0.00 0.00 45.64 3.69
2172 2635 6.010850 TCAAGAGAGTACCAAGAGCTTTCTA 58.989 40.000 0.00 0.00 0.00 2.10
2345 2829 5.163281 TGCATTTTCTTGGCCATGTATTT 57.837 34.783 17.54 0.66 0.00 1.40
2375 2860 3.814504 AGGCCCCCAATACTTATCATG 57.185 47.619 0.00 0.00 0.00 3.07
2403 2888 3.372206 GTCATTCTCATTCACCACCTTCG 59.628 47.826 0.00 0.00 0.00 3.79
2405 2890 4.371624 TGTCATTCTCATTCACCACCTT 57.628 40.909 0.00 0.00 0.00 3.50
2545 3037 5.758296 TCTCCATTTAACTCGGCATACATTC 59.242 40.000 0.00 0.00 0.00 2.67
2596 3092 0.530211 TGCAACCAAAGCATGCACAC 60.530 50.000 21.98 0.58 44.52 3.82
2610 3106 6.709643 CATACATAGCTTTGTACTCTGCAAC 58.290 40.000 17.72 0.00 35.04 4.17
2670 3166 5.883673 CCCTTTTATGAGTTGGTTCGGATTA 59.116 40.000 0.00 0.00 0.00 1.75
2675 3171 2.817258 TGCCCTTTTATGAGTTGGTTCG 59.183 45.455 0.00 0.00 0.00 3.95
2687 3183 3.837731 CCAATTTCCTTCCTGCCCTTTTA 59.162 43.478 0.00 0.00 0.00 1.52
2733 3230 1.757682 TCACCACCAACAACAACTCC 58.242 50.000 0.00 0.00 0.00 3.85
2755 3255 6.475504 TCAAGTTCAGATTTCCTCATGCTAA 58.524 36.000 0.00 0.00 0.00 3.09
2811 3312 7.667219 ACCATTTTAGAGTGTCAAAGTCATCAT 59.333 33.333 0.00 0.00 0.00 2.45
2818 3319 6.294176 CCTTCCACCATTTTAGAGTGTCAAAG 60.294 42.308 0.00 0.00 0.00 2.77
2893 3395 2.752354 CAACCGTTGATGCTGGGAAATA 59.248 45.455 5.23 0.00 0.00 1.40
2896 3398 1.523154 GCAACCGTTGATGCTGGGAA 61.523 55.000 15.63 0.00 39.46 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.