Multiple sequence alignment - TraesCS3A01G213100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G213100 chr3A 100.000 2730 0 0 963 3692 384319779 384322508 0.000000e+00 5042.0
1 TraesCS3A01G213100 chr3A 100.000 510 0 0 1 510 384318817 384319326 0.000000e+00 942.0
2 TraesCS3A01G213100 chr3A 81.188 202 16 8 3415 3613 574913402 574913220 3.840000e-30 143.0
3 TraesCS3A01G213100 chr3B 94.520 2427 49 24 963 3333 384909700 384912098 0.000000e+00 3668.0
4 TraesCS3A01G213100 chr3B 88.312 539 18 20 6 510 384909054 384909581 4.080000e-169 604.0
5 TraesCS3A01G213100 chr3B 75.889 1153 229 38 1184 2304 121575991 121577126 9.020000e-151 544.0
6 TraesCS3A01G213100 chr3D 97.449 1333 22 5 963 2289 291765307 291766633 0.000000e+00 2263.0
7 TraesCS3A01G213100 chr3D 92.333 1200 28 15 2172 3333 291766567 291767740 0.000000e+00 1648.0
8 TraesCS3A01G213100 chr3D 76.471 1139 218 38 1184 2286 75355829 75356953 1.150000e-159 573.0
9 TraesCS3A01G213100 chr3D 87.132 544 20 23 6 510 291764286 291764818 4.140000e-159 571.0
10 TraesCS3A01G213100 chr3D 98.165 109 2 0 963 1071 291764938 291765046 1.350000e-44 191.0
11 TraesCS3A01G213100 chr3D 82.949 217 22 11 3415 3617 590751966 590751751 8.140000e-42 182.0
12 TraesCS3A01G213100 chr3D 91.525 118 1 2 393 510 291765079 291765187 1.780000e-33 154.0
13 TraesCS3A01G213100 chr3D 93.684 95 6 0 3521 3615 106221896 106221802 3.840000e-30 143.0
14 TraesCS3A01G213100 chr3D 82.558 86 15 0 2402 2487 291766872 291766957 3.950000e-10 76.8
15 TraesCS3A01G213100 chr1D 77.743 948 180 24 1171 2101 119010746 119009813 1.500000e-153 553.0
16 TraesCS3A01G213100 chr1D 82.160 213 25 7 3415 3615 318585835 318585624 1.760000e-38 171.0
17 TraesCS3A01G213100 chr1A 77.429 957 183 28 1163 2101 131521542 131520601 1.170000e-149 540.0
18 TraesCS3A01G213100 chr1B 77.110 948 186 24 1171 2101 181218221 181217288 1.520000e-143 520.0
19 TraesCS3A01G213100 chr1B 78.369 282 38 16 3348 3613 44235338 44235064 1.060000e-35 161.0
20 TraesCS3A01G213100 chr1B 82.587 201 18 9 3415 3613 68241099 68241284 1.060000e-35 161.0
21 TraesCS3A01G213100 chr1B 89.815 108 8 2 3521 3628 220332972 220332868 6.430000e-28 135.0
22 TraesCS3A01G213100 chr1B 89.720 107 8 2 3522 3628 545638754 545638651 2.310000e-27 134.0
23 TraesCS3A01G213100 chr1B 82.014 139 19 3 3347 3485 574266142 574266010 3.010000e-21 113.0
24 TraesCS3A01G213100 chr6D 78.668 736 130 23 1160 1878 60168253 60167528 7.220000e-127 464.0
25 TraesCS3A01G213100 chr6B 78.397 736 132 22 1160 1878 134000296 133999571 1.560000e-123 453.0
26 TraesCS3A01G213100 chr6A 79.937 638 102 22 1160 1776 76638877 76638245 2.620000e-121 446.0
27 TraesCS3A01G213100 chr6A 82.587 201 19 11 3415 3613 158455337 158455523 2.950000e-36 163.0
28 TraesCS3A01G213100 chr6A 80.451 133 6 11 3484 3614 48707672 48707558 2.360000e-12 84.2
29 TraesCS3A01G213100 chr7A 77.974 681 140 8 1151 1823 606330998 606330320 5.700000e-113 418.0
30 TraesCS3A01G213100 chr7A 79.600 250 32 12 3378 3613 86102835 86102591 1.060000e-35 161.0
31 TraesCS3A01G213100 chr7A 80.976 205 21 11 3411 3613 25115122 25115310 2.970000e-31 147.0
32 TraesCS3A01G213100 chr7A 94.505 91 5 0 3521 3611 395724805 395724715 1.380000e-29 141.0
33 TraesCS3A01G213100 chr7B 81.279 219 27 11 3415 3620 257647578 257647795 8.200000e-37 165.0
34 TraesCS3A01G213100 chr2B 82.178 202 25 9 3415 3615 5030713 5030522 2.950000e-36 163.0
35 TraesCS3A01G213100 chr4D 80.556 216 28 8 3415 3617 48531816 48532030 1.780000e-33 154.0
36 TraesCS3A01G213100 chr4D 97.368 38 1 0 3365 3402 500817384 500817421 8.560000e-07 65.8
37 TraesCS3A01G213100 chr4D 100.000 29 0 0 3486 3514 57489544 57489516 2.000000e-03 54.7
38 TraesCS3A01G213100 chr5D 93.684 95 5 1 3521 3614 100198394 100198300 1.380000e-29 141.0
39 TraesCS3A01G213100 chr4A 91.837 98 8 0 3417 3514 277892622 277892719 1.790000e-28 137.0
40 TraesCS3A01G213100 chr2D 89.362 94 8 2 3521 3613 565521240 565521148 2.330000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G213100 chr3A 384318817 384322508 3691 False 2992.0 5042 100.000 1 3692 2 chr3A.!!$F1 3691
1 TraesCS3A01G213100 chr3B 384909054 384912098 3044 False 2136.0 3668 91.416 6 3333 2 chr3B.!!$F2 3327
2 TraesCS3A01G213100 chr3B 121575991 121577126 1135 False 544.0 544 75.889 1184 2304 1 chr3B.!!$F1 1120
3 TraesCS3A01G213100 chr3D 291764286 291767740 3454 False 817.3 2263 91.527 6 3333 6 chr3D.!!$F2 3327
4 TraesCS3A01G213100 chr3D 75355829 75356953 1124 False 573.0 573 76.471 1184 2286 1 chr3D.!!$F1 1102
5 TraesCS3A01G213100 chr1D 119009813 119010746 933 True 553.0 553 77.743 1171 2101 1 chr1D.!!$R1 930
6 TraesCS3A01G213100 chr1A 131520601 131521542 941 True 540.0 540 77.429 1163 2101 1 chr1A.!!$R1 938
7 TraesCS3A01G213100 chr1B 181217288 181218221 933 True 520.0 520 77.110 1171 2101 1 chr1B.!!$R2 930
8 TraesCS3A01G213100 chr6D 60167528 60168253 725 True 464.0 464 78.668 1160 1878 1 chr6D.!!$R1 718
9 TraesCS3A01G213100 chr6B 133999571 134000296 725 True 453.0 453 78.397 1160 1878 1 chr6B.!!$R1 718
10 TraesCS3A01G213100 chr6A 76638245 76638877 632 True 446.0 446 79.937 1160 1776 1 chr6A.!!$R2 616
11 TraesCS3A01G213100 chr7A 606330320 606330998 678 True 418.0 418 77.974 1151 1823 1 chr7A.!!$R3 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 172 0.392998 GCCCTCACTACCACACCATG 60.393 60.000 0.0 0.0 0.00 3.66 F
465 515 1.002624 GGTTGATCCGTTGGCTGGA 60.003 57.895 0.0 0.0 40.46 3.86 F
466 516 1.026718 GGTTGATCCGTTGGCTGGAG 61.027 60.000 0.0 0.0 39.30 3.86 F
2275 2819 0.321996 GTCTCCTCCACCACCTTCAC 59.678 60.000 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1021 1073 2.359967 GGAAGAGGAGGGTGGTCGG 61.360 68.421 0.0 0.0 0.0 4.79 R
2265 2809 2.154074 GGGTGGAGGTGAAGGTGGT 61.154 63.158 0.0 0.0 0.0 4.16 R
2277 2821 2.365105 GATGGAGACGGGGGTGGA 60.365 66.667 0.0 0.0 0.0 4.02 R
3661 4255 0.106719 ATACAGGCGATTTGGGGGTG 60.107 55.000 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 3.429141 TCGTCTCGTCGGAGTGGC 61.429 66.667 0.00 0.00 41.26 5.01
160 161 3.782443 CGGGGCCCTCACTACCAC 61.782 72.222 24.38 0.00 0.00 4.16
166 172 0.392998 GCCCTCACTACCACACCATG 60.393 60.000 0.00 0.00 0.00 3.66
171 177 1.354031 TCACTACCACACCATGCCATT 59.646 47.619 0.00 0.00 0.00 3.16
181 187 2.037901 ACCATGCCATTGAACACAACA 58.962 42.857 0.00 0.00 0.00 3.33
340 353 2.520979 CGCAAAAGAAAACACCGTTCA 58.479 42.857 0.00 0.00 0.00 3.18
357 371 3.725895 CGTTCATTGATGACTCGCCAAAG 60.726 47.826 0.00 0.00 36.36 2.77
362 376 5.183713 TCATTGATGACTCGCCAAAGAAAAT 59.816 36.000 0.00 0.00 0.00 1.82
363 377 6.374053 TCATTGATGACTCGCCAAAGAAAATA 59.626 34.615 0.00 0.00 0.00 1.40
364 378 6.567687 TTGATGACTCGCCAAAGAAAATAA 57.432 33.333 0.00 0.00 0.00 1.40
365 379 6.567687 TGATGACTCGCCAAAGAAAATAAA 57.432 33.333 0.00 0.00 0.00 1.40
366 380 6.976088 TGATGACTCGCCAAAGAAAATAAAA 58.024 32.000 0.00 0.00 0.00 1.52
367 381 7.083858 TGATGACTCGCCAAAGAAAATAAAAG 58.916 34.615 0.00 0.00 0.00 2.27
465 515 1.002624 GGTTGATCCGTTGGCTGGA 60.003 57.895 0.00 0.00 40.46 3.86
466 516 1.026718 GGTTGATCCGTTGGCTGGAG 61.027 60.000 0.00 0.00 39.30 3.86
467 517 1.377202 TTGATCCGTTGGCTGGAGC 60.377 57.895 2.94 2.94 42.24 4.70
468 518 2.892425 GATCCGTTGGCTGGAGCG 60.892 66.667 0.00 0.00 43.26 5.03
469 519 3.665675 GATCCGTTGGCTGGAGCGT 62.666 63.158 0.00 0.00 43.26 5.07
1021 1073 1.419922 CGTACACAGACGGCAATGC 59.580 57.895 0.00 0.00 39.19 3.56
2265 2809 2.606519 CCAACCCCGTCTCCTCCA 60.607 66.667 0.00 0.00 0.00 3.86
2266 2810 2.663196 CAACCCCGTCTCCTCCAC 59.337 66.667 0.00 0.00 0.00 4.02
2267 2811 2.606826 AACCCCGTCTCCTCCACC 60.607 66.667 0.00 0.00 0.00 4.61
2268 2812 3.477956 AACCCCGTCTCCTCCACCA 62.478 63.158 0.00 0.00 0.00 4.17
2269 2813 3.391382 CCCCGTCTCCTCCACCAC 61.391 72.222 0.00 0.00 0.00 4.16
2270 2814 3.391382 CCCGTCTCCTCCACCACC 61.391 72.222 0.00 0.00 0.00 4.61
2271 2815 2.283966 CCGTCTCCTCCACCACCT 60.284 66.667 0.00 0.00 0.00 4.00
2272 2816 1.913762 CCGTCTCCTCCACCACCTT 60.914 63.158 0.00 0.00 0.00 3.50
2273 2817 1.592223 CGTCTCCTCCACCACCTTC 59.408 63.158 0.00 0.00 0.00 3.46
2274 2818 1.185618 CGTCTCCTCCACCACCTTCA 61.186 60.000 0.00 0.00 0.00 3.02
2275 2819 0.321996 GTCTCCTCCACCACCTTCAC 59.678 60.000 0.00 0.00 0.00 3.18
2276 2820 0.836400 TCTCCTCCACCACCTTCACC 60.836 60.000 0.00 0.00 0.00 4.02
2277 2821 0.838122 CTCCTCCACCACCTTCACCT 60.838 60.000 0.00 0.00 0.00 4.00
2278 2822 0.836400 TCCTCCACCACCTTCACCTC 60.836 60.000 0.00 0.00 0.00 3.85
2279 2823 1.679898 CTCCACCACCTTCACCTCC 59.320 63.158 0.00 0.00 0.00 4.30
2440 2984 0.686769 GGAGGACCGGTACCACTCAT 60.687 60.000 15.00 2.43 0.00 2.90
2638 3182 3.103911 CACCGACGACGTGGAAGC 61.104 66.667 19.06 0.00 37.88 3.86
2798 3343 6.052360 GGTGTGTTCTTCTTCTTCTTCTTCT 58.948 40.000 0.00 0.00 0.00 2.85
2799 3344 6.540551 GGTGTGTTCTTCTTCTTCTTCTTCTT 59.459 38.462 0.00 0.00 0.00 2.52
2972 3523 5.858581 GCAACAACTAATCAATCACTTGACC 59.141 40.000 0.00 0.00 43.92 4.02
2988 3539 4.222145 ACTTGACCGGAATAACAGCTAAGA 59.778 41.667 9.46 0.00 0.00 2.10
3056 3622 0.605050 TAAGCTGCCAACGCATCACA 60.605 50.000 0.00 0.00 46.11 3.58
3083 3653 3.448686 GATGAGACGGTCGATTTGTGAT 58.551 45.455 1.89 0.00 0.00 3.06
3249 3843 4.124238 TGGATGCGCCTGTATAACTTAAC 58.876 43.478 4.18 0.00 37.63 2.01
3342 3936 5.585500 GTGCATACGACTAACAAGTTGAA 57.415 39.130 10.54 0.00 0.00 2.69
3343 3937 6.165659 GTGCATACGACTAACAAGTTGAAT 57.834 37.500 10.54 0.37 0.00 2.57
3344 3938 6.015504 GTGCATACGACTAACAAGTTGAATG 58.984 40.000 10.54 1.27 0.00 2.67
3345 3939 5.699001 TGCATACGACTAACAAGTTGAATGT 59.301 36.000 10.54 4.58 0.00 2.71
3346 3940 6.015504 GCATACGACTAACAAGTTGAATGTG 58.984 40.000 10.54 0.00 0.00 3.21
3347 3941 6.534059 CATACGACTAACAAGTTGAATGTGG 58.466 40.000 10.54 8.29 0.00 4.17
3348 3942 3.250040 ACGACTAACAAGTTGAATGTGGC 59.750 43.478 10.54 0.00 0.00 5.01
3349 3943 3.664276 CGACTAACAAGTTGAATGTGGCG 60.664 47.826 10.54 5.07 0.00 5.69
3350 3944 3.472652 ACTAACAAGTTGAATGTGGCGA 58.527 40.909 10.54 0.00 0.00 5.54
3351 3945 3.880490 ACTAACAAGTTGAATGTGGCGAA 59.120 39.130 10.54 0.00 0.00 4.70
3352 3946 2.774439 ACAAGTTGAATGTGGCGAAC 57.226 45.000 10.54 0.00 0.00 3.95
3353 3947 1.336755 ACAAGTTGAATGTGGCGAACC 59.663 47.619 10.54 0.00 0.00 3.62
3354 3948 1.336440 CAAGTTGAATGTGGCGAACCA 59.664 47.619 0.00 0.00 46.51 3.67
3379 3973 9.511272 CAATATGTGATTGGATGATTAGAAGGA 57.489 33.333 0.00 0.00 0.00 3.36
3380 3974 9.512588 AATATGTGATTGGATGATTAGAAGGAC 57.487 33.333 0.00 0.00 0.00 3.85
3381 3975 5.684704 TGTGATTGGATGATTAGAAGGACC 58.315 41.667 0.00 0.00 0.00 4.46
3382 3976 4.752101 GTGATTGGATGATTAGAAGGACCG 59.248 45.833 0.00 0.00 0.00 4.79
3383 3977 4.408921 TGATTGGATGATTAGAAGGACCGT 59.591 41.667 0.00 0.00 0.00 4.83
3384 3978 3.819564 TGGATGATTAGAAGGACCGTG 57.180 47.619 0.00 0.00 0.00 4.94
3385 3979 2.434336 TGGATGATTAGAAGGACCGTGG 59.566 50.000 0.00 0.00 0.00 4.94
3386 3980 2.434702 GGATGATTAGAAGGACCGTGGT 59.565 50.000 0.00 0.00 0.00 4.16
3387 3981 3.640029 GGATGATTAGAAGGACCGTGGTA 59.360 47.826 0.00 0.00 0.00 3.25
3388 3982 4.283722 GGATGATTAGAAGGACCGTGGTAT 59.716 45.833 0.00 0.00 0.00 2.73
3389 3983 4.931661 TGATTAGAAGGACCGTGGTATC 57.068 45.455 0.00 0.00 0.00 2.24
3390 3984 3.640029 TGATTAGAAGGACCGTGGTATCC 59.360 47.826 0.00 0.00 34.98 2.59
3391 3985 2.077687 TAGAAGGACCGTGGTATCCC 57.922 55.000 0.00 0.00 35.38 3.85
3392 3986 0.690077 AGAAGGACCGTGGTATCCCC 60.690 60.000 0.00 0.00 35.38 4.81
3393 3987 0.979187 GAAGGACCGTGGTATCCCCA 60.979 60.000 0.00 0.00 42.51 4.96
3394 3988 0.981277 AAGGACCGTGGTATCCCCAG 60.981 60.000 0.00 0.00 46.45 4.45
3395 3989 2.504519 GACCGTGGTATCCCCAGC 59.495 66.667 0.00 0.00 46.45 4.85
3396 3990 3.087906 ACCGTGGTATCCCCAGCC 61.088 66.667 0.00 0.00 46.45 4.85
3397 3991 3.873812 CCGTGGTATCCCCAGCCC 61.874 72.222 0.00 0.00 46.45 5.19
3398 3992 3.087253 CGTGGTATCCCCAGCCCA 61.087 66.667 0.00 0.00 46.45 5.36
3399 3993 2.452064 CGTGGTATCCCCAGCCCAT 61.452 63.158 0.00 0.00 46.45 4.00
3400 3994 1.456287 GTGGTATCCCCAGCCCATC 59.544 63.158 0.00 0.00 46.45 3.51
3401 3995 1.005423 TGGTATCCCCAGCCCATCA 59.995 57.895 0.00 0.00 38.72 3.07
3402 3996 1.061905 TGGTATCCCCAGCCCATCAG 61.062 60.000 0.00 0.00 38.72 2.90
3403 3997 1.062488 GGTATCCCCAGCCCATCAGT 61.062 60.000 0.00 0.00 0.00 3.41
3404 3998 0.109342 GTATCCCCAGCCCATCAGTG 59.891 60.000 0.00 0.00 0.00 3.66
3405 3999 0.327480 TATCCCCAGCCCATCAGTGT 60.327 55.000 0.00 0.00 0.00 3.55
3406 4000 1.217057 ATCCCCAGCCCATCAGTGTT 61.217 55.000 0.00 0.00 0.00 3.32
3407 4001 0.548926 TCCCCAGCCCATCAGTGTTA 60.549 55.000 0.00 0.00 0.00 2.41
3408 4002 0.331278 CCCCAGCCCATCAGTGTTAA 59.669 55.000 0.00 0.00 0.00 2.01
3409 4003 1.272425 CCCCAGCCCATCAGTGTTAAA 60.272 52.381 0.00 0.00 0.00 1.52
3410 4004 2.524306 CCCAGCCCATCAGTGTTAAAA 58.476 47.619 0.00 0.00 0.00 1.52
3411 4005 2.493278 CCCAGCCCATCAGTGTTAAAAG 59.507 50.000 0.00 0.00 0.00 2.27
3412 4006 3.157087 CCAGCCCATCAGTGTTAAAAGT 58.843 45.455 0.00 0.00 0.00 2.66
3413 4007 3.191371 CCAGCCCATCAGTGTTAAAAGTC 59.809 47.826 0.00 0.00 0.00 3.01
3414 4008 4.074970 CAGCCCATCAGTGTTAAAAGTCT 58.925 43.478 0.00 0.00 0.00 3.24
3415 4009 5.245531 CAGCCCATCAGTGTTAAAAGTCTA 58.754 41.667 0.00 0.00 0.00 2.59
3416 4010 5.882557 CAGCCCATCAGTGTTAAAAGTCTAT 59.117 40.000 0.00 0.00 0.00 1.98
3417 4011 6.375455 CAGCCCATCAGTGTTAAAAGTCTATT 59.625 38.462 0.00 0.00 0.00 1.73
3418 4012 6.948309 AGCCCATCAGTGTTAAAAGTCTATTT 59.052 34.615 0.00 0.00 0.00 1.40
3419 4013 7.121315 AGCCCATCAGTGTTAAAAGTCTATTTC 59.879 37.037 0.00 0.00 0.00 2.17
3420 4014 7.094377 GCCCATCAGTGTTAAAAGTCTATTTCA 60.094 37.037 0.00 0.00 0.00 2.69
3421 4015 8.454106 CCCATCAGTGTTAAAAGTCTATTTCAG 58.546 37.037 0.00 0.00 0.00 3.02
3422 4016 8.454106 CCATCAGTGTTAAAAGTCTATTTCAGG 58.546 37.037 0.00 0.00 0.00 3.86
3423 4017 9.219603 CATCAGTGTTAAAAGTCTATTTCAGGA 57.780 33.333 0.00 0.00 0.00 3.86
3424 4018 9.965902 ATCAGTGTTAAAAGTCTATTTCAGGAT 57.034 29.630 0.00 0.00 0.00 3.24
3425 4019 9.793259 TCAGTGTTAAAAGTCTATTTCAGGATT 57.207 29.630 0.00 0.00 0.00 3.01
3428 4022 9.841880 GTGTTAAAAGTCTATTTCAGGATTTCC 57.158 33.333 0.00 0.00 0.00 3.13
3429 4023 8.726988 TGTTAAAAGTCTATTTCAGGATTTCCG 58.273 33.333 0.00 0.00 42.08 4.30
3430 4024 6.759497 AAAAGTCTATTTCAGGATTTCCGG 57.241 37.500 0.00 0.00 42.08 5.14
3431 4025 3.809905 AGTCTATTTCAGGATTTCCGGC 58.190 45.455 0.00 0.00 42.08 6.13
3432 4026 2.544267 GTCTATTTCAGGATTTCCGGCG 59.456 50.000 0.00 0.00 42.08 6.46
3433 4027 2.432874 TCTATTTCAGGATTTCCGGCGA 59.567 45.455 9.30 0.00 42.08 5.54
3434 4028 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
3435 4029 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
3436 4030 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
3437 4031 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
3448 4042 3.204827 CGATGCGCTTTCAGGGGG 61.205 66.667 9.73 0.00 0.00 5.40
3449 4043 2.272146 GATGCGCTTTCAGGGGGA 59.728 61.111 9.73 0.00 0.00 4.81
3450 4044 1.821332 GATGCGCTTTCAGGGGGAG 60.821 63.158 9.73 0.00 0.00 4.30
3451 4045 3.350031 ATGCGCTTTCAGGGGGAGG 62.350 63.158 9.73 0.00 0.00 4.30
3452 4046 3.717294 GCGCTTTCAGGGGGAGGA 61.717 66.667 0.00 0.00 0.00 3.71
3453 4047 2.586792 CGCTTTCAGGGGGAGGAG 59.413 66.667 0.00 0.00 0.00 3.69
3454 4048 2.294078 CGCTTTCAGGGGGAGGAGT 61.294 63.158 0.00 0.00 0.00 3.85
3455 4049 1.842381 CGCTTTCAGGGGGAGGAGTT 61.842 60.000 0.00 0.00 0.00 3.01
3456 4050 0.322906 GCTTTCAGGGGGAGGAGTTG 60.323 60.000 0.00 0.00 0.00 3.16
3457 4051 1.068121 CTTTCAGGGGGAGGAGTTGT 58.932 55.000 0.00 0.00 0.00 3.32
3458 4052 1.425448 CTTTCAGGGGGAGGAGTTGTT 59.575 52.381 0.00 0.00 0.00 2.83
3459 4053 1.064825 TTCAGGGGGAGGAGTTGTTC 58.935 55.000 0.00 0.00 0.00 3.18
3467 4061 4.256813 GGAGTTGTTCCCGTCGAC 57.743 61.111 5.18 5.18 40.37 4.20
3468 4062 1.731969 GGAGTTGTTCCCGTCGACG 60.732 63.158 30.33 30.33 40.37 5.12
3469 4063 1.283793 GAGTTGTTCCCGTCGACGA 59.716 57.895 37.65 17.67 43.02 4.20
3470 4064 1.000736 GAGTTGTTCCCGTCGACGAC 61.001 60.000 37.65 27.09 43.02 4.34
3482 4076 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
3485 4079 4.549516 GACGAGGCGCCTACGGTC 62.550 72.222 34.97 31.78 40.57 4.79
3494 4088 3.834799 CCTACGGTCGGCCCAGTC 61.835 72.222 0.00 0.00 0.00 3.51
3495 4089 2.754658 CTACGGTCGGCCCAGTCT 60.755 66.667 0.00 0.00 0.00 3.24
3496 4090 2.753043 TACGGTCGGCCCAGTCTC 60.753 66.667 0.00 0.00 0.00 3.36
3497 4091 3.278072 TACGGTCGGCCCAGTCTCT 62.278 63.158 0.00 0.00 0.00 3.10
3498 4092 3.827898 CGGTCGGCCCAGTCTCTC 61.828 72.222 0.00 0.00 0.00 3.20
3499 4093 3.827898 GGTCGGCCCAGTCTCTCG 61.828 72.222 0.00 0.00 0.00 4.04
3500 4094 2.750637 GTCGGCCCAGTCTCTCGA 60.751 66.667 0.00 0.00 0.00 4.04
3501 4095 2.035155 TCGGCCCAGTCTCTCGAA 59.965 61.111 0.00 0.00 0.00 3.71
3502 4096 2.046864 TCGGCCCAGTCTCTCGAAG 61.047 63.158 0.00 0.00 0.00 3.79
3503 4097 2.896443 GGCCCAGTCTCTCGAAGG 59.104 66.667 0.00 0.00 0.00 3.46
3504 4098 1.985116 GGCCCAGTCTCTCGAAGGT 60.985 63.158 0.00 0.00 0.00 3.50
3505 4099 1.216710 GCCCAGTCTCTCGAAGGTG 59.783 63.158 0.00 0.00 0.00 4.00
3506 4100 1.216710 CCCAGTCTCTCGAAGGTGC 59.783 63.158 0.00 0.00 0.00 5.01
3507 4101 1.254284 CCCAGTCTCTCGAAGGTGCT 61.254 60.000 0.00 0.00 0.00 4.40
3508 4102 0.172352 CCAGTCTCTCGAAGGTGCTC 59.828 60.000 0.00 0.00 0.00 4.26
3509 4103 0.884514 CAGTCTCTCGAAGGTGCTCA 59.115 55.000 0.00 0.00 0.00 4.26
3510 4104 1.476085 CAGTCTCTCGAAGGTGCTCAT 59.524 52.381 0.00 0.00 0.00 2.90
3511 4105 2.685388 CAGTCTCTCGAAGGTGCTCATA 59.315 50.000 0.00 0.00 0.00 2.15
3512 4106 2.948979 AGTCTCTCGAAGGTGCTCATAG 59.051 50.000 0.00 0.00 0.00 2.23
3513 4107 2.034053 GTCTCTCGAAGGTGCTCATAGG 59.966 54.545 0.00 0.00 0.00 2.57
3514 4108 0.747255 TCTCGAAGGTGCTCATAGGC 59.253 55.000 0.00 0.00 0.00 3.93
3515 4109 0.461548 CTCGAAGGTGCTCATAGGCA 59.538 55.000 0.00 0.00 40.15 4.75
3516 4110 0.461548 TCGAAGGTGCTCATAGGCAG 59.538 55.000 0.00 0.00 43.25 4.85
3517 4111 0.461548 CGAAGGTGCTCATAGGCAGA 59.538 55.000 0.00 0.00 43.25 4.26
3518 4112 1.134699 CGAAGGTGCTCATAGGCAGAA 60.135 52.381 0.00 0.00 43.25 3.02
3519 4113 2.284190 GAAGGTGCTCATAGGCAGAAC 58.716 52.381 0.00 0.00 43.25 3.01
3520 4114 1.577736 AGGTGCTCATAGGCAGAACT 58.422 50.000 0.00 0.00 43.25 3.01
3521 4115 1.209019 AGGTGCTCATAGGCAGAACTG 59.791 52.381 0.00 0.00 43.25 3.16
3534 4128 3.742433 CAGAACTGCTCATAGGGGTAG 57.258 52.381 0.00 0.00 0.00 3.18
3535 4129 2.366916 CAGAACTGCTCATAGGGGTAGG 59.633 54.545 0.00 0.00 0.00 3.18
3536 4130 1.694696 GAACTGCTCATAGGGGTAGGG 59.305 57.143 0.00 0.00 0.00 3.53
3537 4131 0.642710 ACTGCTCATAGGGGTAGGGT 59.357 55.000 0.00 0.00 0.00 4.34
3538 4132 1.051812 CTGCTCATAGGGGTAGGGTG 58.948 60.000 0.00 0.00 0.00 4.61
3539 4133 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
3540 4134 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
3541 4135 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
3542 4136 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
3543 4137 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
3544 4138 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
3545 4139 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
3546 4140 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
3547 4141 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
3548 4142 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
3549 4143 1.227438 GTAGGGTGTGCGTGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
3550 4144 1.227409 TAGGGTGTGCGTGTGTGTG 60.227 57.895 0.00 0.00 0.00 3.82
3551 4145 1.962321 TAGGGTGTGCGTGTGTGTGT 61.962 55.000 0.00 0.00 0.00 3.72
3552 4146 2.403378 GGGTGTGCGTGTGTGTGTT 61.403 57.895 0.00 0.00 0.00 3.32
3553 4147 1.061887 GGTGTGCGTGTGTGTGTTC 59.938 57.895 0.00 0.00 0.00 3.18
3554 4148 1.640210 GGTGTGCGTGTGTGTGTTCA 61.640 55.000 0.00 0.00 0.00 3.18
3555 4149 0.376852 GTGTGCGTGTGTGTGTTCAT 59.623 50.000 0.00 0.00 0.00 2.57
3556 4150 1.595328 GTGTGCGTGTGTGTGTTCATA 59.405 47.619 0.00 0.00 0.00 2.15
3557 4151 1.864082 TGTGCGTGTGTGTGTTCATAG 59.136 47.619 0.00 0.00 0.00 2.23
3558 4152 1.194547 GTGCGTGTGTGTGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
3559 4153 0.796312 GCGTGTGTGTGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
3560 4154 1.438651 CGTGTGTGTGTTCATAGGGG 58.561 55.000 0.00 0.00 0.00 4.79
3561 4155 1.270625 CGTGTGTGTGTTCATAGGGGT 60.271 52.381 0.00 0.00 0.00 4.95
3562 4156 2.151202 GTGTGTGTGTTCATAGGGGTG 58.849 52.381 0.00 0.00 0.00 4.61
3563 4157 2.050918 TGTGTGTGTTCATAGGGGTGA 58.949 47.619 0.00 0.00 0.00 4.02
3564 4158 2.038426 TGTGTGTGTTCATAGGGGTGAG 59.962 50.000 0.00 0.00 0.00 3.51
3565 4159 2.038557 GTGTGTGTTCATAGGGGTGAGT 59.961 50.000 0.00 0.00 0.00 3.41
3566 4160 2.038426 TGTGTGTTCATAGGGGTGAGTG 59.962 50.000 0.00 0.00 0.00 3.51
3567 4161 2.038557 GTGTGTTCATAGGGGTGAGTGT 59.961 50.000 0.00 0.00 0.00 3.55
3568 4162 3.259876 GTGTGTTCATAGGGGTGAGTGTA 59.740 47.826 0.00 0.00 0.00 2.90
3569 4163 3.259876 TGTGTTCATAGGGGTGAGTGTAC 59.740 47.826 0.00 0.00 0.00 2.90
3570 4164 2.494471 TGTTCATAGGGGTGAGTGTACG 59.506 50.000 0.00 0.00 0.00 3.67
3571 4165 1.108776 TCATAGGGGTGAGTGTACGC 58.891 55.000 0.00 0.00 0.00 4.42
3572 4166 0.248907 CATAGGGGTGAGTGTACGCG 60.249 60.000 3.53 3.53 34.64 6.01
3573 4167 2.012902 ATAGGGGTGAGTGTACGCGC 62.013 60.000 5.73 0.00 34.64 6.86
3575 4169 4.712425 GGGTGAGTGTACGCGCGT 62.712 66.667 39.05 39.05 0.00 6.01
3576 4170 2.176546 GGTGAGTGTACGCGCGTA 59.823 61.111 36.55 36.55 0.00 4.42
3577 4171 1.226491 GGTGAGTGTACGCGCGTAT 60.226 57.895 40.91 27.96 32.82 3.06
3578 4172 1.469126 GGTGAGTGTACGCGCGTATG 61.469 60.000 40.91 12.52 32.82 2.39
3579 4173 0.795735 GTGAGTGTACGCGCGTATGT 60.796 55.000 40.91 28.71 32.82 2.29
3580 4174 0.726256 TGAGTGTACGCGCGTATGTA 59.274 50.000 40.91 27.85 32.82 2.29
3581 4175 1.331447 TGAGTGTACGCGCGTATGTAT 59.669 47.619 40.91 27.58 32.82 2.29
3582 4176 1.707117 GAGTGTACGCGCGTATGTATG 59.293 52.381 40.91 9.66 32.82 2.39
3583 4177 1.331447 AGTGTACGCGCGTATGTATGA 59.669 47.619 40.91 20.46 32.82 2.15
3584 4178 1.707117 GTGTACGCGCGTATGTATGAG 59.293 52.381 40.91 8.05 32.82 2.90
3585 4179 1.598601 TGTACGCGCGTATGTATGAGA 59.401 47.619 40.91 18.71 32.82 3.27
3586 4180 2.224784 TGTACGCGCGTATGTATGAGAT 59.775 45.455 40.91 15.83 32.82 2.75
3587 4181 1.965083 ACGCGCGTATGTATGAGATC 58.035 50.000 37.08 0.00 0.00 2.75
3588 4182 1.535896 ACGCGCGTATGTATGAGATCT 59.464 47.619 37.08 3.21 0.00 2.75
3589 4183 2.031069 ACGCGCGTATGTATGAGATCTT 60.031 45.455 37.08 2.39 0.00 2.40
3590 4184 2.339694 CGCGCGTATGTATGAGATCTTG 59.660 50.000 24.19 0.00 0.00 3.02
3591 4185 2.091277 GCGCGTATGTATGAGATCTTGC 59.909 50.000 8.43 0.00 0.00 4.01
3592 4186 2.339694 CGCGTATGTATGAGATCTTGCG 59.660 50.000 0.00 0.00 35.74 4.85
3593 4187 3.309388 GCGTATGTATGAGATCTTGCGT 58.691 45.455 0.00 0.00 0.00 5.24
3594 4188 3.362237 GCGTATGTATGAGATCTTGCGTC 59.638 47.826 0.00 0.00 0.00 5.19
3595 4189 4.788690 CGTATGTATGAGATCTTGCGTCT 58.211 43.478 0.00 0.00 0.00 4.18
3596 4190 4.614702 CGTATGTATGAGATCTTGCGTCTG 59.385 45.833 0.00 0.00 0.00 3.51
3597 4191 4.662468 ATGTATGAGATCTTGCGTCTGT 57.338 40.909 0.00 0.00 0.00 3.41
3598 4192 5.774498 ATGTATGAGATCTTGCGTCTGTA 57.226 39.130 0.00 0.00 0.00 2.74
3599 4193 4.921547 TGTATGAGATCTTGCGTCTGTAC 58.078 43.478 0.00 0.00 0.00 2.90
3600 4194 4.640647 TGTATGAGATCTTGCGTCTGTACT 59.359 41.667 0.00 0.00 0.00 2.73
3601 4195 5.820947 TGTATGAGATCTTGCGTCTGTACTA 59.179 40.000 0.00 0.00 0.00 1.82
3602 4196 6.486993 TGTATGAGATCTTGCGTCTGTACTAT 59.513 38.462 0.00 0.00 0.00 2.12
3603 4197 5.175090 TGAGATCTTGCGTCTGTACTATG 57.825 43.478 0.00 0.00 0.00 2.23
3604 4198 4.640647 TGAGATCTTGCGTCTGTACTATGT 59.359 41.667 0.00 0.00 0.00 2.29
3605 4199 5.125578 TGAGATCTTGCGTCTGTACTATGTT 59.874 40.000 0.00 0.00 0.00 2.71
3606 4200 6.317893 TGAGATCTTGCGTCTGTACTATGTTA 59.682 38.462 0.00 0.00 0.00 2.41
3607 4201 7.096884 AGATCTTGCGTCTGTACTATGTTAA 57.903 36.000 0.00 0.00 0.00 2.01
3608 4202 7.544622 AGATCTTGCGTCTGTACTATGTTAAA 58.455 34.615 0.00 0.00 0.00 1.52
3609 4203 8.033038 AGATCTTGCGTCTGTACTATGTTAAAA 58.967 33.333 0.00 0.00 0.00 1.52
3610 4204 7.949903 TCTTGCGTCTGTACTATGTTAAAAA 57.050 32.000 0.00 0.00 0.00 1.94
3631 4225 6.740411 AAAAACAAGTTGAATGTGTGCATT 57.260 29.167 10.54 0.00 46.99 3.56
3632 4226 5.721876 AAACAAGTTGAATGTGTGCATTG 57.278 34.783 10.54 0.00 44.61 2.82
3633 4227 3.125316 ACAAGTTGAATGTGTGCATTGC 58.875 40.909 10.54 0.46 44.61 3.56
3634 4228 3.124560 CAAGTTGAATGTGTGCATTGCA 58.875 40.909 7.38 7.38 44.61 4.08
3635 4229 3.671008 AGTTGAATGTGTGCATTGCAT 57.329 38.095 15.49 0.00 44.61 3.96
3636 4230 3.322369 AGTTGAATGTGTGCATTGCATG 58.678 40.909 15.49 0.00 44.61 4.06
3637 4231 3.061322 GTTGAATGTGTGCATTGCATGT 58.939 40.909 15.49 0.00 44.61 3.21
3638 4232 4.022155 AGTTGAATGTGTGCATTGCATGTA 60.022 37.500 15.49 4.46 44.61 2.29
3639 4233 4.099380 TGAATGTGTGCATTGCATGTAG 57.901 40.909 15.49 0.00 44.61 2.74
3640 4234 3.119424 TGAATGTGTGCATTGCATGTAGG 60.119 43.478 15.49 0.00 44.61 3.18
3641 4235 1.175654 TGTGTGCATTGCATGTAGGG 58.824 50.000 15.49 0.00 41.91 3.53
3642 4236 1.271817 TGTGTGCATTGCATGTAGGGA 60.272 47.619 15.49 0.00 41.91 4.20
3643 4237 1.818060 GTGTGCATTGCATGTAGGGAA 59.182 47.619 15.49 0.00 41.91 3.97
3644 4238 2.230992 GTGTGCATTGCATGTAGGGAAA 59.769 45.455 15.49 0.00 41.91 3.13
3645 4239 2.230992 TGTGCATTGCATGTAGGGAAAC 59.769 45.455 15.49 0.00 41.91 2.78
3646 4240 1.472082 TGCATTGCATGTAGGGAAACG 59.528 47.619 7.38 0.00 31.71 3.60
3647 4241 1.202290 GCATTGCATGTAGGGAAACGG 60.202 52.381 3.15 0.00 0.00 4.44
3648 4242 1.102978 ATTGCATGTAGGGAAACGGC 58.897 50.000 0.00 0.00 0.00 5.68
3649 4243 0.963355 TTGCATGTAGGGAAACGGCC 60.963 55.000 0.00 0.00 0.00 6.13
3650 4244 1.377987 GCATGTAGGGAAACGGCCA 60.378 57.895 2.24 0.00 0.00 5.36
3651 4245 1.654023 GCATGTAGGGAAACGGCCAC 61.654 60.000 2.24 0.00 0.00 5.01
3653 4247 2.435410 GTAGGGAAACGGCCACGG 60.435 66.667 2.24 0.00 46.48 4.94
3654 4248 2.924101 TAGGGAAACGGCCACGGT 60.924 61.111 2.24 0.00 45.80 4.83
3660 4254 3.243816 AACGGCCACGGTTACCCT 61.244 61.111 2.24 0.00 46.48 4.34
3661 4255 3.244281 AACGGCCACGGTTACCCTC 62.244 63.158 2.24 0.00 46.48 4.30
3662 4256 3.697747 CGGCCACGGTTACCCTCA 61.698 66.667 2.24 0.00 36.18 3.86
3663 4257 2.046604 GGCCACGGTTACCCTCAC 60.047 66.667 0.00 0.00 0.00 3.51
3664 4258 2.046604 GCCACGGTTACCCTCACC 60.047 66.667 0.00 0.00 0.00 4.02
3665 4259 2.666812 CCACGGTTACCCTCACCC 59.333 66.667 0.00 0.00 0.00 4.61
3666 4260 2.666812 CACGGTTACCCTCACCCC 59.333 66.667 0.00 0.00 0.00 4.95
3667 4261 2.608678 ACGGTTACCCTCACCCCC 60.609 66.667 0.00 0.00 0.00 5.40
3668 4262 2.608368 CGGTTACCCTCACCCCCA 60.608 66.667 0.00 0.00 0.00 4.96
3669 4263 2.225596 CGGTTACCCTCACCCCCAA 61.226 63.158 0.00 0.00 0.00 4.12
3670 4264 1.781153 CGGTTACCCTCACCCCCAAA 61.781 60.000 0.00 0.00 0.00 3.28
3671 4265 0.708209 GGTTACCCTCACCCCCAAAT 59.292 55.000 0.00 0.00 0.00 2.32
3672 4266 1.341679 GGTTACCCTCACCCCCAAATC 60.342 57.143 0.00 0.00 0.00 2.17
3673 4267 0.621609 TTACCCTCACCCCCAAATCG 59.378 55.000 0.00 0.00 0.00 3.34
3674 4268 1.917336 TACCCTCACCCCCAAATCGC 61.917 60.000 0.00 0.00 0.00 4.58
3675 4269 2.440247 CCTCACCCCCAAATCGCC 60.440 66.667 0.00 0.00 0.00 5.54
3676 4270 2.677228 CTCACCCCCAAATCGCCT 59.323 61.111 0.00 0.00 0.00 5.52
3677 4271 1.750399 CTCACCCCCAAATCGCCTG 60.750 63.158 0.00 0.00 0.00 4.85
3678 4272 2.035626 CACCCCCAAATCGCCTGT 59.964 61.111 0.00 0.00 0.00 4.00
3679 4273 1.202099 TCACCCCCAAATCGCCTGTA 61.202 55.000 0.00 0.00 0.00 2.74
3680 4274 0.106719 CACCCCCAAATCGCCTGTAT 60.107 55.000 0.00 0.00 0.00 2.29
3681 4275 1.142060 CACCCCCAAATCGCCTGTATA 59.858 52.381 0.00 0.00 0.00 1.47
3682 4276 1.142262 ACCCCCAAATCGCCTGTATAC 59.858 52.381 0.00 0.00 0.00 1.47
3683 4277 1.508632 CCCCAAATCGCCTGTATACG 58.491 55.000 0.00 0.00 0.00 3.06
3684 4278 1.202604 CCCCAAATCGCCTGTATACGT 60.203 52.381 0.00 0.00 0.00 3.57
3685 4279 2.132762 CCCAAATCGCCTGTATACGTC 58.867 52.381 0.00 0.00 0.00 4.34
3686 4280 1.784856 CCAAATCGCCTGTATACGTCG 59.215 52.381 0.00 1.97 0.00 5.12
3687 4281 1.784856 CAAATCGCCTGTATACGTCGG 59.215 52.381 0.00 6.41 0.00 4.79
3688 4282 0.313043 AATCGCCTGTATACGTCGGG 59.687 55.000 0.00 0.00 34.70 5.14
3689 4283 0.535780 ATCGCCTGTATACGTCGGGA 60.536 55.000 4.82 8.08 33.49 5.14
3690 4284 1.009222 CGCCTGTATACGTCGGGAC 60.009 63.158 4.82 0.00 33.49 4.46
3691 4285 1.717791 CGCCTGTATACGTCGGGACA 61.718 60.000 4.82 0.00 33.49 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.844244 TCCTCCGTAATACAACTAGAGTATTTC 58.156 37.037 21.52 17.46 41.17 2.17
2 3 8.757982 TCCTCCGTAATACAACTAGAGTATTT 57.242 34.615 21.52 11.71 41.17 1.40
3 4 7.447853 CCTCCTCCGTAATACAACTAGAGTATT 59.552 40.741 20.70 20.70 42.84 1.89
4 5 6.941436 CCTCCTCCGTAATACAACTAGAGTAT 59.059 42.308 0.00 1.69 33.79 2.12
16 17 4.355549 TGTTTTCTCCCTCCTCCGTAATA 58.644 43.478 0.00 0.00 0.00 0.98
60 61 2.307153 TGGGAATCCACACCTAGCC 58.693 57.895 0.09 0.00 38.32 3.93
94 95 4.421446 ACGAGACGACGACGACGC 62.421 66.667 18.98 8.88 43.96 5.19
120 121 0.098200 CAACGTGCAGAGCATCCATG 59.902 55.000 0.00 0.00 41.91 3.66
160 161 2.223994 TGTTGTGTTCAATGGCATGGTG 60.224 45.455 0.00 0.00 35.92 4.17
166 172 1.202394 TGCTGTGTTGTGTTCAATGGC 60.202 47.619 0.00 0.00 35.92 4.40
171 177 2.294512 TGTTTGTGCTGTGTTGTGTTCA 59.705 40.909 0.00 0.00 0.00 3.18
181 187 1.314534 TGCTGTGCTGTTTGTGCTGT 61.315 50.000 0.00 0.00 0.00 4.40
232 239 3.457625 ATGCTAGCTGCGCTCCCTG 62.458 63.158 17.23 0.00 46.63 4.45
340 353 5.649782 ATTTTCTTTGGCGAGTCATCAAT 57.350 34.783 0.00 0.00 0.00 2.57
465 515 1.153628 GATGGACCAACGCTACGCT 60.154 57.895 0.00 0.00 0.00 5.07
466 516 1.447140 TGATGGACCAACGCTACGC 60.447 57.895 0.00 0.00 0.00 4.42
467 517 1.410737 CGTGATGGACCAACGCTACG 61.411 60.000 12.82 6.28 0.00 3.51
468 518 1.693083 GCGTGATGGACCAACGCTAC 61.693 60.000 28.32 11.59 45.01 3.58
469 519 1.447140 GCGTGATGGACCAACGCTA 60.447 57.895 28.32 0.00 45.01 4.26
1021 1073 2.359967 GGAAGAGGAGGGTGGTCGG 61.360 68.421 0.00 0.00 0.00 4.79
2205 2650 2.283529 TGAAGGTGGCGGAGGAGAC 61.284 63.158 0.00 0.00 0.00 3.36
2265 2809 2.154074 GGGTGGAGGTGAAGGTGGT 61.154 63.158 0.00 0.00 0.00 4.16
2266 2810 2.757077 GGGTGGAGGTGAAGGTGG 59.243 66.667 0.00 0.00 0.00 4.61
2267 2811 2.757077 GGGGTGGAGGTGAAGGTG 59.243 66.667 0.00 0.00 0.00 4.00
2268 2812 2.531942 GGGGGTGGAGGTGAAGGT 60.532 66.667 0.00 0.00 0.00 3.50
2269 2813 3.717294 CGGGGGTGGAGGTGAAGG 61.717 72.222 0.00 0.00 0.00 3.46
2270 2814 2.928396 ACGGGGGTGGAGGTGAAG 60.928 66.667 0.00 0.00 0.00 3.02
2271 2815 2.926242 GACGGGGGTGGAGGTGAA 60.926 66.667 0.00 0.00 0.00 3.18
2272 2816 3.899545 GAGACGGGGGTGGAGGTGA 62.900 68.421 0.00 0.00 0.00 4.02
2273 2817 3.391382 GAGACGGGGGTGGAGGTG 61.391 72.222 0.00 0.00 0.00 4.00
2274 2818 4.716977 GGAGACGGGGGTGGAGGT 62.717 72.222 0.00 0.00 0.00 3.85
2275 2819 4.715130 TGGAGACGGGGGTGGAGG 62.715 72.222 0.00 0.00 0.00 4.30
2276 2820 2.365635 ATGGAGACGGGGGTGGAG 60.366 66.667 0.00 0.00 0.00 3.86
2277 2821 2.365105 GATGGAGACGGGGGTGGA 60.365 66.667 0.00 0.00 0.00 4.02
2278 2822 2.687200 TGATGGAGACGGGGGTGG 60.687 66.667 0.00 0.00 0.00 4.61
2279 2823 2.584608 GTGATGGAGACGGGGGTG 59.415 66.667 0.00 0.00 0.00 4.61
2523 3067 0.035725 TCGGCTCTTCGTACTCTGGA 60.036 55.000 0.00 0.00 0.00 3.86
2638 3182 2.277756 GTAGTCGTACGCCGGCAG 60.278 66.667 28.98 21.29 45.80 4.85
2972 3523 7.492669 TCAGATTCTTTCTTAGCTGTTATTCCG 59.507 37.037 0.00 0.00 29.93 4.30
2988 3539 7.723172 ACTCATTTTGGAGTCTTCAGATTCTTT 59.277 33.333 0.00 0.00 44.63 2.52
3056 3622 1.092348 TCGACCGTCTCATCGTGAAT 58.908 50.000 0.00 0.00 39.38 2.57
3083 3653 3.372730 GCATTCCCAGGCAACGCA 61.373 61.111 0.00 0.00 46.39 5.24
3116 3700 2.355599 CCATCCAGCTAGCGCTCG 60.356 66.667 16.34 9.56 45.15 5.03
3216 3810 1.382522 GCGCATCCATTTTGAGGAGA 58.617 50.000 0.30 0.00 38.83 3.71
3249 3843 2.437413 GGTAAAGTCAAGAGCCAAGGG 58.563 52.381 0.00 0.00 0.00 3.95
3333 3927 1.336755 GGTTCGCCACATTCAACTTGT 59.663 47.619 0.00 0.00 37.19 3.16
3334 3928 1.336440 TGGTTCGCCACATTCAACTTG 59.664 47.619 0.00 0.00 43.56 3.16
3335 3929 1.686355 TGGTTCGCCACATTCAACTT 58.314 45.000 0.00 0.00 43.56 2.66
3336 3930 3.412722 TGGTTCGCCACATTCAACT 57.587 47.368 0.00 0.00 43.56 3.16
3345 3939 3.623453 TCCAATCACATATTGGTTCGCCA 60.623 43.478 14.66 0.00 46.47 5.69
3346 3940 2.948979 TCCAATCACATATTGGTTCGCC 59.051 45.455 14.66 0.00 46.47 5.54
3347 3941 4.275689 TCATCCAATCACATATTGGTTCGC 59.724 41.667 14.66 0.00 46.47 4.70
3348 3942 6.564709 ATCATCCAATCACATATTGGTTCG 57.435 37.500 14.66 6.58 46.47 3.95
3349 3943 9.288576 TCTAATCATCCAATCACATATTGGTTC 57.711 33.333 14.66 0.00 46.47 3.62
3350 3944 9.645128 TTCTAATCATCCAATCACATATTGGTT 57.355 29.630 14.66 5.76 46.47 3.67
3351 3945 9.293404 CTTCTAATCATCCAATCACATATTGGT 57.707 33.333 14.66 2.46 46.47 3.67
3353 3947 9.511272 TCCTTCTAATCATCCAATCACATATTG 57.489 33.333 0.00 0.00 0.00 1.90
3354 3948 9.512588 GTCCTTCTAATCATCCAATCACATATT 57.487 33.333 0.00 0.00 0.00 1.28
3355 3949 8.105829 GGTCCTTCTAATCATCCAATCACATAT 58.894 37.037 0.00 0.00 0.00 1.78
3356 3950 7.453393 GGTCCTTCTAATCATCCAATCACATA 58.547 38.462 0.00 0.00 0.00 2.29
3357 3951 6.302269 GGTCCTTCTAATCATCCAATCACAT 58.698 40.000 0.00 0.00 0.00 3.21
3358 3952 5.684704 GGTCCTTCTAATCATCCAATCACA 58.315 41.667 0.00 0.00 0.00 3.58
3359 3953 4.752101 CGGTCCTTCTAATCATCCAATCAC 59.248 45.833 0.00 0.00 0.00 3.06
3360 3954 4.408921 ACGGTCCTTCTAATCATCCAATCA 59.591 41.667 0.00 0.00 0.00 2.57
3361 3955 4.752101 CACGGTCCTTCTAATCATCCAATC 59.248 45.833 0.00 0.00 0.00 2.67
3362 3956 4.444876 CCACGGTCCTTCTAATCATCCAAT 60.445 45.833 0.00 0.00 0.00 3.16
3363 3957 3.118408 CCACGGTCCTTCTAATCATCCAA 60.118 47.826 0.00 0.00 0.00 3.53
3364 3958 2.434336 CCACGGTCCTTCTAATCATCCA 59.566 50.000 0.00 0.00 0.00 3.41
3365 3959 2.434702 ACCACGGTCCTTCTAATCATCC 59.565 50.000 0.00 0.00 0.00 3.51
3366 3960 3.821421 ACCACGGTCCTTCTAATCATC 57.179 47.619 0.00 0.00 0.00 2.92
3367 3961 4.283722 GGATACCACGGTCCTTCTAATCAT 59.716 45.833 0.00 0.00 0.00 2.45
3368 3962 3.640029 GGATACCACGGTCCTTCTAATCA 59.360 47.826 0.00 0.00 0.00 2.57
3369 3963 4.254402 GGATACCACGGTCCTTCTAATC 57.746 50.000 0.00 0.00 0.00 1.75
3385 3979 0.109342 CACTGATGGGCTGGGGATAC 59.891 60.000 0.00 0.00 0.00 2.24
3386 3980 0.327480 ACACTGATGGGCTGGGGATA 60.327 55.000 0.00 0.00 0.00 2.59
3387 3981 1.217057 AACACTGATGGGCTGGGGAT 61.217 55.000 0.00 0.00 0.00 3.85
3388 3982 0.548926 TAACACTGATGGGCTGGGGA 60.549 55.000 0.00 0.00 0.00 4.81
3389 3983 0.331278 TTAACACTGATGGGCTGGGG 59.669 55.000 0.00 0.00 0.00 4.96
3390 3984 2.214376 TTTAACACTGATGGGCTGGG 57.786 50.000 0.00 0.00 0.00 4.45
3391 3985 3.157087 ACTTTTAACACTGATGGGCTGG 58.843 45.455 0.00 0.00 0.00 4.85
3392 3986 4.074970 AGACTTTTAACACTGATGGGCTG 58.925 43.478 0.00 0.00 0.00 4.85
3393 3987 4.373156 AGACTTTTAACACTGATGGGCT 57.627 40.909 0.00 0.00 0.00 5.19
3394 3988 6.759497 AATAGACTTTTAACACTGATGGGC 57.241 37.500 0.00 0.00 0.00 5.36
3395 3989 8.335532 TGAAATAGACTTTTAACACTGATGGG 57.664 34.615 0.00 0.00 0.00 4.00
3396 3990 8.454106 CCTGAAATAGACTTTTAACACTGATGG 58.546 37.037 0.00 0.00 0.00 3.51
3397 3991 9.219603 TCCTGAAATAGACTTTTAACACTGATG 57.780 33.333 0.00 0.00 0.00 3.07
3398 3992 9.965902 ATCCTGAAATAGACTTTTAACACTGAT 57.034 29.630 0.00 0.00 0.00 2.90
3399 3993 9.793259 AATCCTGAAATAGACTTTTAACACTGA 57.207 29.630 0.00 0.00 0.00 3.41
3402 3996 9.841880 GGAAATCCTGAAATAGACTTTTAACAC 57.158 33.333 0.00 0.00 0.00 3.32
3403 3997 8.726988 CGGAAATCCTGAAATAGACTTTTAACA 58.273 33.333 0.00 0.00 0.00 2.41
3404 3998 8.182227 CCGGAAATCCTGAAATAGACTTTTAAC 58.818 37.037 0.00 0.00 0.00 2.01
3405 3999 7.148137 GCCGGAAATCCTGAAATAGACTTTTAA 60.148 37.037 5.05 0.00 0.00 1.52
3406 4000 6.317893 GCCGGAAATCCTGAAATAGACTTTTA 59.682 38.462 5.05 0.00 0.00 1.52
3407 4001 5.125578 GCCGGAAATCCTGAAATAGACTTTT 59.874 40.000 5.05 0.00 0.00 2.27
3408 4002 4.640647 GCCGGAAATCCTGAAATAGACTTT 59.359 41.667 5.05 0.00 0.00 2.66
3409 4003 4.200092 GCCGGAAATCCTGAAATAGACTT 58.800 43.478 5.05 0.00 0.00 3.01
3410 4004 3.741388 CGCCGGAAATCCTGAAATAGACT 60.741 47.826 5.05 0.00 0.00 3.24
3411 4005 2.544267 CGCCGGAAATCCTGAAATAGAC 59.456 50.000 5.05 0.00 0.00 2.59
3412 4006 2.432874 TCGCCGGAAATCCTGAAATAGA 59.567 45.455 5.05 0.00 0.00 1.98
3413 4007 2.833794 TCGCCGGAAATCCTGAAATAG 58.166 47.619 5.05 0.00 0.00 1.73
3414 4008 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
3415 4009 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
3416 4010 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
3417 4011 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
3418 4012 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
3419 4013 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
3420 4014 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
3431 4025 3.204827 CCCCCTGAAAGCGCATCG 61.205 66.667 11.47 4.29 0.00 3.84
3432 4026 1.821332 CTCCCCCTGAAAGCGCATC 60.821 63.158 11.47 8.39 0.00 3.91
3433 4027 2.273449 CTCCCCCTGAAAGCGCAT 59.727 61.111 11.47 0.00 0.00 4.73
3434 4028 4.033776 CCTCCCCCTGAAAGCGCA 62.034 66.667 11.47 0.00 0.00 6.09
3435 4029 3.689002 CTCCTCCCCCTGAAAGCGC 62.689 68.421 0.00 0.00 0.00 5.92
3436 4030 1.842381 AACTCCTCCCCCTGAAAGCG 61.842 60.000 0.00 0.00 0.00 4.68
3437 4031 0.322906 CAACTCCTCCCCCTGAAAGC 60.323 60.000 0.00 0.00 0.00 3.51
3438 4032 1.068121 ACAACTCCTCCCCCTGAAAG 58.932 55.000 0.00 0.00 0.00 2.62
3439 4033 1.423921 GAACAACTCCTCCCCCTGAAA 59.576 52.381 0.00 0.00 0.00 2.69
3440 4034 1.064825 GAACAACTCCTCCCCCTGAA 58.935 55.000 0.00 0.00 0.00 3.02
3441 4035 0.840722 GGAACAACTCCTCCCCCTGA 60.841 60.000 0.00 0.00 41.61 3.86
3442 4036 1.685820 GGAACAACTCCTCCCCCTG 59.314 63.158 0.00 0.00 41.61 4.45
3443 4037 1.541620 GGGAACAACTCCTCCCCCT 60.542 63.158 0.00 0.00 45.03 4.79
3444 4038 3.087988 GGGAACAACTCCTCCCCC 58.912 66.667 0.00 0.00 45.03 5.40
3446 4040 1.295746 GACGGGAACAACTCCTCCC 59.704 63.158 0.00 0.00 46.97 4.30
3447 4041 1.080025 CGACGGGAACAACTCCTCC 60.080 63.158 0.00 0.00 44.68 4.30
3448 4042 0.388263 GTCGACGGGAACAACTCCTC 60.388 60.000 0.00 0.00 44.68 3.71
3449 4043 1.664306 GTCGACGGGAACAACTCCT 59.336 57.895 0.00 0.00 44.68 3.69
3450 4044 1.731969 CGTCGACGGGAACAACTCC 60.732 63.158 29.70 0.00 44.54 3.85
3451 4045 1.000736 GTCGTCGACGGGAACAACTC 61.001 60.000 35.05 12.17 40.29 3.01
3452 4046 1.008079 GTCGTCGACGGGAACAACT 60.008 57.895 35.05 0.00 40.29 3.16
3453 4047 3.530666 GTCGTCGACGGGAACAAC 58.469 61.111 35.05 21.77 40.29 3.32
3464 4058 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
3465 4059 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
3478 4072 2.754658 AGACTGGGCCGACCGTAG 60.755 66.667 0.00 0.00 44.64 3.51
3479 4073 2.753043 GAGACTGGGCCGACCGTA 60.753 66.667 0.00 0.00 44.64 4.02
3480 4074 4.680537 AGAGACTGGGCCGACCGT 62.681 66.667 0.00 0.00 44.64 4.83
3481 4075 3.827898 GAGAGACTGGGCCGACCG 61.828 72.222 0.00 0.00 44.64 4.79
3482 4076 3.827898 CGAGAGACTGGGCCGACC 61.828 72.222 0.00 0.00 40.81 4.79
3483 4077 2.272918 CTTCGAGAGACTGGGCCGAC 62.273 65.000 0.00 0.00 41.84 4.79
3484 4078 2.035155 TTCGAGAGACTGGGCCGA 59.965 61.111 0.00 0.00 41.84 5.54
3485 4079 2.492090 CTTCGAGAGACTGGGCCG 59.508 66.667 0.00 0.00 41.84 6.13
3486 4080 1.985116 ACCTTCGAGAGACTGGGCC 60.985 63.158 0.00 0.00 41.84 5.80
3487 4081 1.216710 CACCTTCGAGAGACTGGGC 59.783 63.158 0.00 0.00 41.84 5.36
3488 4082 1.216710 GCACCTTCGAGAGACTGGG 59.783 63.158 0.00 0.00 41.84 4.45
3489 4083 0.172352 GAGCACCTTCGAGAGACTGG 59.828 60.000 0.00 0.00 41.84 4.00
3490 4084 0.884514 TGAGCACCTTCGAGAGACTG 59.115 55.000 0.00 0.00 41.84 3.51
3491 4085 1.846007 ATGAGCACCTTCGAGAGACT 58.154 50.000 0.00 0.00 41.84 3.24
3492 4086 2.034053 CCTATGAGCACCTTCGAGAGAC 59.966 54.545 0.00 0.00 41.84 3.36
3493 4087 2.302260 CCTATGAGCACCTTCGAGAGA 58.698 52.381 0.00 0.00 39.20 3.10
3494 4088 1.269517 GCCTATGAGCACCTTCGAGAG 60.270 57.143 0.00 0.00 0.00 3.20
3495 4089 0.747255 GCCTATGAGCACCTTCGAGA 59.253 55.000 0.00 0.00 0.00 4.04
3496 4090 0.461548 TGCCTATGAGCACCTTCGAG 59.538 55.000 0.00 0.00 38.00 4.04
3497 4091 0.461548 CTGCCTATGAGCACCTTCGA 59.538 55.000 0.00 0.00 38.00 3.71
3498 4092 0.461548 TCTGCCTATGAGCACCTTCG 59.538 55.000 0.00 0.00 38.00 3.79
3499 4093 2.093235 AGTTCTGCCTATGAGCACCTTC 60.093 50.000 0.00 0.00 38.00 3.46
3500 4094 1.912043 AGTTCTGCCTATGAGCACCTT 59.088 47.619 0.00 0.00 38.00 3.50
3501 4095 1.209019 CAGTTCTGCCTATGAGCACCT 59.791 52.381 0.00 0.00 38.00 4.00
3502 4096 1.661341 CAGTTCTGCCTATGAGCACC 58.339 55.000 0.00 0.00 38.00 5.01
3503 4097 1.012841 GCAGTTCTGCCTATGAGCAC 58.987 55.000 13.11 0.00 38.00 4.40
3504 4098 0.907486 AGCAGTTCTGCCTATGAGCA 59.093 50.000 19.28 0.00 41.46 4.26
3505 4099 1.134580 TGAGCAGTTCTGCCTATGAGC 60.135 52.381 19.28 3.76 34.90 4.26
3506 4100 2.975732 TGAGCAGTTCTGCCTATGAG 57.024 50.000 19.28 0.00 34.90 2.90
3507 4101 3.323115 CCTATGAGCAGTTCTGCCTATGA 59.677 47.826 19.28 0.00 34.90 2.15
3508 4102 3.556633 CCCTATGAGCAGTTCTGCCTATG 60.557 52.174 19.28 7.92 34.90 2.23
3509 4103 2.636893 CCCTATGAGCAGTTCTGCCTAT 59.363 50.000 19.28 15.76 34.90 2.57
3510 4104 2.042464 CCCTATGAGCAGTTCTGCCTA 58.958 52.381 19.28 10.36 34.90 3.93
3511 4105 0.835941 CCCTATGAGCAGTTCTGCCT 59.164 55.000 19.28 8.45 34.90 4.75
3512 4106 0.179034 CCCCTATGAGCAGTTCTGCC 60.179 60.000 19.28 12.21 34.90 4.85
3513 4107 0.543749 ACCCCTATGAGCAGTTCTGC 59.456 55.000 15.88 15.88 0.00 4.26
3514 4108 2.366916 CCTACCCCTATGAGCAGTTCTG 59.633 54.545 0.00 0.00 0.00 3.02
3515 4109 2.683768 CCTACCCCTATGAGCAGTTCT 58.316 52.381 0.00 0.00 0.00 3.01
3516 4110 1.694696 CCCTACCCCTATGAGCAGTTC 59.305 57.143 0.00 0.00 0.00 3.01
3517 4111 1.009675 ACCCTACCCCTATGAGCAGTT 59.990 52.381 0.00 0.00 0.00 3.16
3518 4112 0.642710 ACCCTACCCCTATGAGCAGT 59.357 55.000 0.00 0.00 0.00 4.40
3519 4113 1.051812 CACCCTACCCCTATGAGCAG 58.948 60.000 0.00 0.00 0.00 4.24
3520 4114 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
3521 4115 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
3522 4116 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
3523 4117 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
3524 4118 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
3525 4119 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
3526 4120 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
3527 4121 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
3528 4122 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
3529 4123 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
3530 4124 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
3531 4125 1.227438 ACACACACGCACACCCTAC 60.227 57.895 0.00 0.00 0.00 3.18
3532 4126 1.227409 CACACACACGCACACCCTA 60.227 57.895 0.00 0.00 0.00 3.53
3533 4127 2.513666 CACACACACGCACACCCT 60.514 61.111 0.00 0.00 0.00 4.34
3534 4128 2.317685 GAACACACACACGCACACCC 62.318 60.000 0.00 0.00 0.00 4.61
3535 4129 1.061887 GAACACACACACGCACACC 59.938 57.895 0.00 0.00 0.00 4.16
3536 4130 0.376852 ATGAACACACACACGCACAC 59.623 50.000 0.00 0.00 0.00 3.82
3537 4131 1.864082 CTATGAACACACACACGCACA 59.136 47.619 0.00 0.00 0.00 4.57
3538 4132 1.194547 CCTATGAACACACACACGCAC 59.805 52.381 0.00 0.00 0.00 5.34
3539 4133 1.507562 CCTATGAACACACACACGCA 58.492 50.000 0.00 0.00 0.00 5.24
3540 4134 0.796312 CCCTATGAACACACACACGC 59.204 55.000 0.00 0.00 0.00 5.34
3541 4135 1.270625 ACCCCTATGAACACACACACG 60.271 52.381 0.00 0.00 0.00 4.49
3542 4136 2.151202 CACCCCTATGAACACACACAC 58.849 52.381 0.00 0.00 0.00 3.82
3543 4137 2.038426 CTCACCCCTATGAACACACACA 59.962 50.000 0.00 0.00 0.00 3.72
3544 4138 2.038557 ACTCACCCCTATGAACACACAC 59.961 50.000 0.00 0.00 0.00 3.82
3545 4139 2.038426 CACTCACCCCTATGAACACACA 59.962 50.000 0.00 0.00 0.00 3.72
3546 4140 2.038557 ACACTCACCCCTATGAACACAC 59.961 50.000 0.00 0.00 0.00 3.82
3547 4141 2.334977 ACACTCACCCCTATGAACACA 58.665 47.619 0.00 0.00 0.00 3.72
3548 4142 3.675228 CGTACACTCACCCCTATGAACAC 60.675 52.174 0.00 0.00 0.00 3.32
3549 4143 2.494471 CGTACACTCACCCCTATGAACA 59.506 50.000 0.00 0.00 0.00 3.18
3550 4144 2.737679 GCGTACACTCACCCCTATGAAC 60.738 54.545 0.00 0.00 0.00 3.18
3551 4145 1.479323 GCGTACACTCACCCCTATGAA 59.521 52.381 0.00 0.00 0.00 2.57
3552 4146 1.108776 GCGTACACTCACCCCTATGA 58.891 55.000 0.00 0.00 0.00 2.15
3553 4147 0.248907 CGCGTACACTCACCCCTATG 60.249 60.000 0.00 0.00 0.00 2.23
3554 4148 2.012902 GCGCGTACACTCACCCCTAT 62.013 60.000 8.43 0.00 0.00 2.57
3555 4149 2.703798 GCGCGTACACTCACCCCTA 61.704 63.158 8.43 0.00 0.00 3.53
3556 4150 4.065281 GCGCGTACACTCACCCCT 62.065 66.667 8.43 0.00 0.00 4.79
3558 4152 2.603135 ATACGCGCGTACACTCACCC 62.603 60.000 41.36 0.00 33.01 4.61
3559 4153 1.226491 ATACGCGCGTACACTCACC 60.226 57.895 41.36 0.00 33.01 4.02
3560 4154 0.795735 ACATACGCGCGTACACTCAC 60.796 55.000 41.36 0.00 33.01 3.51
3561 4155 0.726256 TACATACGCGCGTACACTCA 59.274 50.000 41.36 23.80 33.01 3.41
3562 4156 1.707117 CATACATACGCGCGTACACTC 59.293 52.381 41.36 0.00 33.01 3.51
3563 4157 1.331447 TCATACATACGCGCGTACACT 59.669 47.619 41.36 27.72 33.01 3.55
3564 4158 1.707117 CTCATACATACGCGCGTACAC 59.293 52.381 41.36 0.00 33.01 2.90
3565 4159 1.598601 TCTCATACATACGCGCGTACA 59.401 47.619 41.36 29.13 33.01 2.90
3566 4160 2.305252 TCTCATACATACGCGCGTAC 57.695 50.000 41.36 0.00 33.01 3.67
3567 4161 2.740447 AGATCTCATACATACGCGCGTA 59.260 45.455 40.65 40.65 34.87 4.42
3568 4162 1.535896 AGATCTCATACATACGCGCGT 59.464 47.619 39.05 39.05 0.00 6.01
3569 4163 2.248828 AGATCTCATACATACGCGCG 57.751 50.000 30.96 30.96 0.00 6.86
3570 4164 2.091277 GCAAGATCTCATACATACGCGC 59.909 50.000 5.73 0.00 0.00 6.86
3571 4165 2.339694 CGCAAGATCTCATACATACGCG 59.660 50.000 3.53 3.53 43.02 6.01
3572 4166 3.309388 ACGCAAGATCTCATACATACGC 58.691 45.455 0.00 0.00 43.62 4.42
3573 4167 4.614702 CAGACGCAAGATCTCATACATACG 59.385 45.833 0.00 0.00 43.62 3.06
3574 4168 5.524284 ACAGACGCAAGATCTCATACATAC 58.476 41.667 0.00 0.00 43.62 2.39
3575 4169 5.774498 ACAGACGCAAGATCTCATACATA 57.226 39.130 0.00 0.00 43.62 2.29
3576 4170 4.662468 ACAGACGCAAGATCTCATACAT 57.338 40.909 0.00 0.00 43.62 2.29
3577 4171 4.640647 AGTACAGACGCAAGATCTCATACA 59.359 41.667 0.00 0.00 43.62 2.29
3578 4172 5.176407 AGTACAGACGCAAGATCTCATAC 57.824 43.478 0.00 0.00 43.62 2.39
3579 4173 6.486993 ACATAGTACAGACGCAAGATCTCATA 59.513 38.462 0.00 0.00 43.62 2.15
3580 4174 5.300539 ACATAGTACAGACGCAAGATCTCAT 59.699 40.000 0.00 0.00 43.62 2.90
3581 4175 4.640647 ACATAGTACAGACGCAAGATCTCA 59.359 41.667 0.00 0.00 43.62 3.27
3582 4176 5.176407 ACATAGTACAGACGCAAGATCTC 57.824 43.478 0.00 0.00 43.62 2.75
3583 4177 5.584253 AACATAGTACAGACGCAAGATCT 57.416 39.130 0.00 0.00 43.62 2.75
3584 4178 7.751047 TTTAACATAGTACAGACGCAAGATC 57.249 36.000 0.00 0.00 43.62 2.75
3585 4179 8.542497 TTTTTAACATAGTACAGACGCAAGAT 57.458 30.769 0.00 0.00 43.62 2.40
3586 4180 7.949903 TTTTTAACATAGTACAGACGCAAGA 57.050 32.000 0.00 0.00 43.62 3.02
3608 4202 6.544622 CAATGCACACATTCAACTTGTTTTT 58.455 32.000 0.00 0.00 44.83 1.94
3609 4203 5.447548 GCAATGCACACATTCAACTTGTTTT 60.448 36.000 0.00 0.00 44.83 2.43
3610 4204 4.034279 GCAATGCACACATTCAACTTGTTT 59.966 37.500 0.00 0.00 44.83 2.83
3611 4205 3.556775 GCAATGCACACATTCAACTTGTT 59.443 39.130 0.00 0.00 44.83 2.83
3612 4206 3.125316 GCAATGCACACATTCAACTTGT 58.875 40.909 0.00 0.00 44.83 3.16
3613 4207 3.124560 TGCAATGCACACATTCAACTTG 58.875 40.909 2.72 0.00 44.83 3.16
3614 4208 3.455990 TGCAATGCACACATTCAACTT 57.544 38.095 2.72 0.00 44.83 2.66
3615 4209 3.322369 CATGCAATGCACACATTCAACT 58.678 40.909 11.23 0.00 44.83 3.16
3616 4210 3.715618 CATGCAATGCACACATTCAAC 57.284 42.857 11.23 0.00 44.83 3.18
3629 4223 1.102978 GCCGTTTCCCTACATGCAAT 58.897 50.000 0.00 0.00 0.00 3.56
3630 4224 0.963355 GGCCGTTTCCCTACATGCAA 60.963 55.000 0.00 0.00 0.00 4.08
3631 4225 1.377987 GGCCGTTTCCCTACATGCA 60.378 57.895 0.00 0.00 0.00 3.96
3632 4226 1.377987 TGGCCGTTTCCCTACATGC 60.378 57.895 0.00 0.00 0.00 4.06
3633 4227 1.366111 CGTGGCCGTTTCCCTACATG 61.366 60.000 0.00 0.00 0.00 3.21
3634 4228 1.078708 CGTGGCCGTTTCCCTACAT 60.079 57.895 0.00 0.00 0.00 2.29
3635 4229 2.344500 CGTGGCCGTTTCCCTACA 59.656 61.111 0.00 0.00 0.00 2.74
3636 4230 2.435410 CCGTGGCCGTTTCCCTAC 60.435 66.667 0.00 0.00 0.00 3.18
3637 4231 1.190833 TAACCGTGGCCGTTTCCCTA 61.191 55.000 0.00 0.00 0.00 3.53
3638 4232 2.518709 TAACCGTGGCCGTTTCCCT 61.519 57.895 0.00 0.00 0.00 4.20
3639 4233 2.032376 TAACCGTGGCCGTTTCCC 59.968 61.111 0.00 0.00 0.00 3.97
3640 4234 2.327343 GGTAACCGTGGCCGTTTCC 61.327 63.158 0.00 0.00 0.00 3.13
3641 4235 3.256936 GGTAACCGTGGCCGTTTC 58.743 61.111 0.00 0.00 0.00 2.78
3653 4247 1.680860 CGATTTGGGGGTGAGGGTAAC 60.681 57.143 0.00 0.00 0.00 2.50
3654 4248 0.621609 CGATTTGGGGGTGAGGGTAA 59.378 55.000 0.00 0.00 0.00 2.85
3655 4249 1.917336 GCGATTTGGGGGTGAGGGTA 61.917 60.000 0.00 0.00 0.00 3.69
3656 4250 3.087065 CGATTTGGGGGTGAGGGT 58.913 61.111 0.00 0.00 0.00 4.34
3657 4251 2.440247 GCGATTTGGGGGTGAGGG 60.440 66.667 0.00 0.00 0.00 4.30
3658 4252 2.440247 GGCGATTTGGGGGTGAGG 60.440 66.667 0.00 0.00 0.00 3.86
3659 4253 1.750399 CAGGCGATTTGGGGGTGAG 60.750 63.158 0.00 0.00 0.00 3.51
3660 4254 1.202099 TACAGGCGATTTGGGGGTGA 61.202 55.000 0.00 0.00 0.00 4.02
3661 4255 0.106719 ATACAGGCGATTTGGGGGTG 60.107 55.000 0.00 0.00 0.00 4.61
3662 4256 1.142262 GTATACAGGCGATTTGGGGGT 59.858 52.381 0.00 0.00 0.00 4.95
3663 4257 1.876416 CGTATACAGGCGATTTGGGGG 60.876 57.143 3.32 0.00 0.00 5.40
3664 4258 1.202604 ACGTATACAGGCGATTTGGGG 60.203 52.381 3.32 0.00 0.00 4.96
3665 4259 2.132762 GACGTATACAGGCGATTTGGG 58.867 52.381 3.32 0.00 0.00 4.12
3666 4260 1.784856 CGACGTATACAGGCGATTTGG 59.215 52.381 15.02 0.00 0.00 3.28
3667 4261 1.784856 CCGACGTATACAGGCGATTTG 59.215 52.381 19.82 4.31 0.00 2.32
3668 4262 1.269413 CCCGACGTATACAGGCGATTT 60.269 52.381 19.82 0.00 0.00 2.17
3669 4263 0.313043 CCCGACGTATACAGGCGATT 59.687 55.000 19.82 0.00 0.00 3.34
3670 4264 0.535780 TCCCGACGTATACAGGCGAT 60.536 55.000 19.82 0.00 0.00 4.58
3671 4265 1.153188 TCCCGACGTATACAGGCGA 60.153 57.895 19.82 9.17 0.00 5.54
3672 4266 1.009222 GTCCCGACGTATACAGGCG 60.009 63.158 13.69 13.69 0.00 5.52
3673 4267 2.109431 TGTCCCGACGTATACAGGC 58.891 57.895 3.32 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.