Multiple sequence alignment - TraesCS3A01G211200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G211200 chr3A 100.000 5956 0 0 1 5956 378815801 378809846 0.000000e+00 10999.0
1 TraesCS3A01G211200 chr3A 93.750 128 8 0 3198 3325 12408857 12408730 6.090000e-45 193.0
2 TraesCS3A01G211200 chr3A 97.647 85 2 0 678 762 22230634 22230718 4.810000e-31 147.0
3 TraesCS3A01G211200 chr3A 92.784 97 5 1 676 770 635388313 635388217 8.050000e-29 139.0
4 TraesCS3A01G211200 chr3D 89.784 2036 131 34 3449 5438 288550172 288548168 0.000000e+00 2536.0
5 TraesCS3A01G211200 chr3D 91.584 808 27 11 764 1530 288551469 288550662 0.000000e+00 1077.0
6 TraesCS3A01G211200 chr3D 88.806 536 29 14 5437 5956 288548086 288547566 3.920000e-176 628.0
7 TraesCS3A01G211200 chr3D 83.576 688 72 19 27 682 288552178 288551500 1.840000e-169 606.0
8 TraesCS3A01G211200 chr3D 97.209 215 6 0 1649 1863 288550596 288550382 1.220000e-96 364.0
9 TraesCS3A01G211200 chr3D 97.260 146 4 0 3320 3465 288550381 288550236 1.280000e-61 248.0
10 TraesCS3A01G211200 chr3D 96.000 150 6 0 1864 2013 15953584 15953733 1.660000e-60 244.0
11 TraesCS3A01G211200 chr3D 94.737 152 8 0 1862 2013 87391734 87391885 2.770000e-58 237.0
12 TraesCS3A01G211200 chr3D 94.737 152 8 0 1862 2013 312735844 312735693 2.770000e-58 237.0
13 TraesCS3A01G211200 chr3D 95.349 129 6 0 3198 3326 87391875 87392003 7.820000e-49 206.0
14 TraesCS3A01G211200 chr3D 84.667 150 20 3 2013 2159 10719645 10719794 4.810000e-31 147.0
15 TraesCS3A01G211200 chr3D 94.565 92 5 0 671 762 450878778 450878869 6.220000e-30 143.0
16 TraesCS3A01G211200 chr3D 86.667 120 14 1 2037 2154 200471198 200471317 1.350000e-26 132.0
17 TraesCS3A01G211200 chr3D 97.368 38 1 0 1613 1650 288550651 288550614 1.390000e-06 65.8
18 TraesCS3A01G211200 chr3B 89.955 1762 115 21 3449 5172 381481209 381479472 0.000000e+00 2217.0
19 TraesCS3A01G211200 chr3B 90.972 1008 37 12 898 1863 381482399 381481404 0.000000e+00 1308.0
20 TraesCS3A01G211200 chr3B 85.417 288 31 3 5437 5715 381476901 381476616 7.550000e-74 289.0
21 TraesCS3A01G211200 chr3B 87.451 255 10 10 5702 5956 381466054 381465822 2.110000e-69 274.0
22 TraesCS3A01G211200 chr3B 95.205 146 7 0 3320 3465 381481403 381481258 1.290000e-56 231.0
23 TraesCS3A01G211200 chr3B 81.579 266 42 6 5174 5438 381477634 381477375 4.680000e-51 213.0
24 TraesCS3A01G211200 chr3B 100.000 47 0 0 5345 5391 381477491 381477445 2.960000e-13 87.9
25 TraesCS3A01G211200 chr6B 92.664 886 58 4 2012 2892 30174176 30173293 0.000000e+00 1269.0
26 TraesCS3A01G211200 chr6B 89.987 799 61 4 2013 2810 410128342 410127562 0.000000e+00 1014.0
27 TraesCS3A01G211200 chr6B 90.909 253 21 2 2947 3197 30173295 30173043 7.390000e-89 339.0
28 TraesCS3A01G211200 chr5B 92.759 801 46 5 2244 3040 513855962 513856754 0.000000e+00 1147.0
29 TraesCS3A01G211200 chr5B 93.007 143 8 2 1649 1790 68901225 68901366 2.180000e-49 207.0
30 TraesCS3A01G211200 chr5B 91.304 138 9 3 3198 3333 35776575 35776711 1.020000e-42 185.0
31 TraesCS3A01G211200 chr5B 94.565 92 3 1 673 762 62940415 62940324 2.240000e-29 141.0
32 TraesCS3A01G211200 chr2D 90.299 804 54 5 2013 2810 32811445 32810660 0.000000e+00 1031.0
33 TraesCS3A01G211200 chr2D 89.517 725 49 8 2088 2810 348974891 348974192 0.000000e+00 893.0
34 TraesCS3A01G211200 chr2D 96.667 150 5 0 1864 2013 366629114 366629263 3.560000e-62 250.0
35 TraesCS3A01G211200 chr2D 94.245 139 7 1 1649 1787 79056182 79056319 1.680000e-50 211.0
36 TraesCS3A01G211200 chr2D 91.837 147 10 2 1645 1790 302250232 302250087 2.810000e-48 204.0
37 TraesCS3A01G211200 chr2D 85.897 156 20 2 2001 2154 574603880 574603725 1.330000e-36 165.0
38 TraesCS3A01G211200 chr2D 90.291 103 10 0 668 770 619480887 619480785 1.040000e-27 135.0
39 TraesCS3A01G211200 chr2D 94.937 79 4 0 2013 2091 348975151 348975073 2.250000e-24 124.0
40 TraesCS3A01G211200 chr7B 90.250 800 59 4 2012 2810 73130844 73130063 0.000000e+00 1027.0
41 TraesCS3A01G211200 chr7B 89.362 47 4 1 376 422 70535742 70535787 2.320000e-04 58.4
42 TraesCS3A01G211200 chr6A 89.565 805 59 13 2007 2807 531707346 531708129 0.000000e+00 998.0
43 TraesCS3A01G211200 chr6A 85.101 396 46 3 2806 3198 608293270 608292885 5.600000e-105 392.0
44 TraesCS3A01G211200 chr5D 85.714 420 55 3 2806 3221 482978378 482978796 7.090000e-119 438.0
45 TraesCS3A01G211200 chr5D 94.667 150 8 0 1864 2013 446271911 446271762 3.590000e-57 233.0
46 TraesCS3A01G211200 chr5D 92.414 145 9 2 1649 1792 61714057 61713914 7.820000e-49 206.0
47 TraesCS3A01G211200 chr5D 94.444 126 7 0 3198 3323 444353972 444354097 1.690000e-45 195.0
48 TraesCS3A01G211200 chr7D 86.352 403 50 2 2806 3203 596938882 596938480 9.170000e-118 435.0
49 TraesCS3A01G211200 chr7D 93.671 158 8 2 1854 2011 392074870 392075025 9.980000e-58 235.0
50 TraesCS3A01G211200 chr7D 94.521 146 6 2 1649 1793 74596056 74596200 2.160000e-54 224.0
51 TraesCS3A01G211200 chr7D 90.291 103 6 4 661 762 81761041 81761140 1.350000e-26 132.0
52 TraesCS3A01G211200 chr7D 90.099 101 10 0 670 770 106367244 106367344 1.350000e-26 132.0
53 TraesCS3A01G211200 chr7D 97.778 45 0 1 912 956 188163563 188163606 6.400000e-10 76.8
54 TraesCS3A01G211200 chrUn 85.856 403 52 2 2806 3203 384802964 384802562 1.980000e-114 424.0
55 TraesCS3A01G211200 chrUn 96.000 150 6 0 1864 2013 310933140 310932991 1.660000e-60 244.0
56 TraesCS3A01G211200 chrUn 96.000 150 6 0 1864 2013 320953808 320953957 1.660000e-60 244.0
57 TraesCS3A01G211200 chrUn 80.723 83 15 1 3923 4005 77778937 77779018 4.980000e-06 63.9
58 TraesCS3A01G211200 chr7A 83.038 395 52 5 2806 3197 137844655 137845037 1.590000e-90 344.0
59 TraesCS3A01G211200 chr2B 97.333 150 4 0 1864 2013 237584755 237584606 7.660000e-64 255.0
60 TraesCS3A01G211200 chr2B 96.000 125 5 0 3198 3322 237584616 237584492 2.810000e-48 204.0
61 TraesCS3A01G211200 chr1B 96.667 150 5 0 1864 2013 642774379 642774528 3.560000e-62 250.0
62 TraesCS3A01G211200 chr1B 94.839 155 7 1 1860 2013 574320286 574320132 2.140000e-59 241.0
63 TraesCS3A01G211200 chr1B 89.542 153 13 3 3198 3348 412369657 412369808 2.190000e-44 191.0
64 TraesCS3A01G211200 chr1B 97.619 84 2 0 679 762 151363657 151363740 1.730000e-30 145.0
65 TraesCS3A01G211200 chr5A 95.395 152 7 0 1862 2013 703193439 703193288 5.960000e-60 243.0
66 TraesCS3A01G211200 chr1D 95.395 152 7 0 1862 2013 401204837 401204686 5.960000e-60 243.0
67 TraesCS3A01G211200 chr1D 94.079 152 9 0 1862 2013 475865234 475865083 1.290000e-56 231.0
68 TraesCS3A01G211200 chr1D 92.500 160 10 1 1854 2013 408713673 408713830 1.670000e-55 228.0
69 TraesCS3A01G211200 chr1D 95.200 125 6 0 3198 3322 492260662 492260538 1.310000e-46 198.0
70 TraesCS3A01G211200 chr4D 94.245 139 8 0 1649 1787 74079366 74079504 4.680000e-51 213.0
71 TraesCS3A01G211200 chr2A 92.361 144 11 0 1649 1792 176673280 176673423 7.820000e-49 206.0
72 TraesCS3A01G211200 chr2A 92.481 133 8 2 3198 3330 744975708 744975838 7.880000e-44 189.0
73 TraesCS3A01G211200 chr4A 94.444 126 7 0 3198 3323 597820195 597820070 1.690000e-45 195.0
74 TraesCS3A01G211200 chr4A 76.705 352 73 8 2851 3197 78287045 78287392 2.830000e-43 187.0
75 TraesCS3A01G211200 chr1A 76.087 368 73 14 2851 3211 551939146 551939505 1.710000e-40 178.0
76 TraesCS3A01G211200 chr1A 84.956 113 13 4 3103 3213 249042099 249042209 1.750000e-20 111.0
77 TraesCS3A01G211200 chr4B 88.182 110 11 1 655 762 327529674 327529783 4.840000e-26 130.0
78 TraesCS3A01G211200 chr4B 84.783 92 11 1 3923 4014 626076991 626076903 8.220000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G211200 chr3A 378809846 378815801 5955 True 10999.000000 10999 100.000000 1 5956 1 chr3A.!!$R2 5955
1 TraesCS3A01G211200 chr3D 288547566 288552178 4612 True 789.257143 2536 92.226714 27 5956 7 chr3D.!!$R2 5929
2 TraesCS3A01G211200 chr3B 381476616 381482399 5783 True 724.316667 2217 90.521333 898 5715 6 chr3B.!!$R2 4817
3 TraesCS3A01G211200 chr6B 410127562 410128342 780 True 1014.000000 1014 89.987000 2013 2810 1 chr6B.!!$R1 797
4 TraesCS3A01G211200 chr6B 30173043 30174176 1133 True 804.000000 1269 91.786500 2012 3197 2 chr6B.!!$R2 1185
5 TraesCS3A01G211200 chr5B 513855962 513856754 792 False 1147.000000 1147 92.759000 2244 3040 1 chr5B.!!$F3 796
6 TraesCS3A01G211200 chr2D 32810660 32811445 785 True 1031.000000 1031 90.299000 2013 2810 1 chr2D.!!$R1 797
7 TraesCS3A01G211200 chr2D 348974192 348975151 959 True 508.500000 893 92.227000 2013 2810 2 chr2D.!!$R5 797
8 TraesCS3A01G211200 chr7B 73130063 73130844 781 True 1027.000000 1027 90.250000 2012 2810 1 chr7B.!!$R1 798
9 TraesCS3A01G211200 chr6A 531707346 531708129 783 False 998.000000 998 89.565000 2007 2807 1 chr6A.!!$F1 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 442 0.107508 CCATCGCCACACTCTTCCAT 60.108 55.0 0.0 0.0 0.00 3.41 F
554 582 0.181114 TTGTGCTGTTGTCCTCTGCT 59.819 50.0 0.0 0.0 0.00 4.24 F
558 586 0.250467 GCTGTTGTCCTCTGCTTCCA 60.250 55.0 0.0 0.0 0.00 3.53 F
1876 1991 0.029567 CATCTGTACTCGCTCCGTCC 59.970 60.0 0.0 0.0 0.00 4.79 F
1883 1998 0.038159 ACTCGCTCCGTCCTTGAAAG 60.038 55.0 0.0 0.0 0.00 2.62 F
3198 3515 0.032515 TGCTCCTAATCCACCTCCGA 60.033 55.0 0.0 0.0 0.00 4.55 F
4050 4506 0.601057 AACGGCAGTTTTATGGGCAC 59.399 50.0 0.0 0.0 37.26 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 1979 0.038159 CTTTCAAGGACGGAGCGAGT 60.038 55.0 0.00 0.00 0.00 4.18 R
1867 1982 0.038159 ACTCTTTCAAGGACGGAGCG 60.038 55.0 0.00 0.00 0.00 5.03 R
2041 2156 1.037030 GGGAGCGATTTCAATGGGCA 61.037 55.0 0.00 0.00 0.00 5.36 R
3174 3491 0.105039 GGTGGATTAGGAGCACTCGG 59.895 60.0 0.00 0.00 0.00 4.63 R
3751 4201 0.184933 CCCTATCCCGCCCAATTTCA 59.815 55.0 0.00 0.00 0.00 2.69 R
4722 5179 0.394352 CTCATGGGCAGGGTTGTACC 60.394 60.0 0.00 0.00 37.60 3.34 R
5535 8333 0.097674 GTCTGCCAATGACGACATGC 59.902 55.0 0.05 2.26 36.79 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.628630 AAATGGAGAAAGAACAAAAACCAAAA 57.371 26.923 0.00 0.00 0.00 2.44
26 27 8.628630 AATGGAGAAAGAACAAAAACCAAAAA 57.371 26.923 0.00 0.00 0.00 1.94
27 28 7.665561 TGGAGAAAGAACAAAAACCAAAAAG 57.334 32.000 0.00 0.00 0.00 2.27
28 29 6.652900 TGGAGAAAGAACAAAAACCAAAAAGG 59.347 34.615 0.00 0.00 45.67 3.11
29 30 6.876789 GGAGAAAGAACAAAAACCAAAAAGGA 59.123 34.615 0.00 0.00 41.22 3.36
30 31 7.389330 GGAGAAAGAACAAAAACCAAAAAGGAA 59.611 33.333 0.00 0.00 41.22 3.36
31 32 8.684386 AGAAAGAACAAAAACCAAAAAGGAAA 57.316 26.923 0.00 0.00 41.22 3.13
32 33 9.126151 AGAAAGAACAAAAACCAAAAAGGAAAA 57.874 25.926 0.00 0.00 41.22 2.29
33 34 9.737427 GAAAGAACAAAAACCAAAAAGGAAAAA 57.263 25.926 0.00 0.00 41.22 1.94
106 107 9.838975 AACAAAATAACCAAAAGAAAAAGCAAG 57.161 25.926 0.00 0.00 0.00 4.01
178 179 8.110970 ACAAAAATAAACCGAAAGAAAGAACG 57.889 30.769 0.00 0.00 0.00 3.95
190 203 7.044901 CCGAAAGAAAGAACGAAAAAGAAAGAC 60.045 37.037 0.00 0.00 0.00 3.01
195 208 8.388853 AGAAAGAACGAAAAAGAAAGACACTAC 58.611 33.333 0.00 0.00 0.00 2.73
201 214 5.392585 CGAAAAAGAAAGACACTACGCAAAG 59.607 40.000 0.00 0.00 0.00 2.77
218 231 2.923020 CAAAGCAGTGAAAAACAACGCT 59.077 40.909 0.00 0.00 0.00 5.07
219 232 4.101942 CAAAGCAGTGAAAAACAACGCTA 58.898 39.130 0.00 0.00 0.00 4.26
220 233 4.568152 AAGCAGTGAAAAACAACGCTAT 57.432 36.364 0.00 0.00 0.00 2.97
222 235 4.290155 AGCAGTGAAAAACAACGCTATTG 58.710 39.130 0.00 0.00 0.00 1.90
223 236 4.041723 GCAGTGAAAAACAACGCTATTGT 58.958 39.130 0.00 0.00 0.00 2.71
224 237 5.008217 AGCAGTGAAAAACAACGCTATTGTA 59.992 36.000 3.88 0.00 31.50 2.41
225 238 5.115021 GCAGTGAAAAACAACGCTATTGTAC 59.885 40.000 3.88 0.00 31.50 2.90
226 239 6.427150 CAGTGAAAAACAACGCTATTGTACT 58.573 36.000 3.88 1.65 31.50 2.73
228 241 6.259167 AGTGAAAAACAACGCTATTGTACTGA 59.741 34.615 3.88 0.00 31.50 3.41
229 242 6.573725 GTGAAAAACAACGCTATTGTACTGAG 59.426 38.462 3.88 0.00 31.50 3.35
230 243 6.259167 TGAAAAACAACGCTATTGTACTGAGT 59.741 34.615 3.88 0.00 31.50 3.41
231 244 5.840940 AAACAACGCTATTGTACTGAGTC 57.159 39.130 3.88 0.00 31.50 3.36
232 245 4.785511 ACAACGCTATTGTACTGAGTCT 57.214 40.909 1.64 0.00 0.00 3.24
233 246 4.486090 ACAACGCTATTGTACTGAGTCTG 58.514 43.478 1.64 0.00 0.00 3.51
238 251 3.369471 GCTATTGTACTGAGTCTGCCCAA 60.369 47.826 0.00 1.28 0.00 4.12
243 256 4.606210 TGTACTGAGTCTGCCCAATACTA 58.394 43.478 0.00 0.00 0.00 1.82
251 264 4.158764 AGTCTGCCCAATACTATAGCGATC 59.841 45.833 0.00 0.00 0.00 3.69
252 265 3.447586 TCTGCCCAATACTATAGCGATCC 59.552 47.826 0.00 0.00 0.00 3.36
267 280 0.827368 GATCCGAGGAAGCTTCAGGT 59.173 55.000 27.02 15.92 0.00 4.00
275 288 0.676151 GAAGCTTCAGGTGAGGCCAG 60.676 60.000 21.67 0.00 46.80 4.85
285 298 2.916934 AGGTGAGGCCAGGTTACATTTA 59.083 45.455 5.01 0.00 40.61 1.40
288 301 4.385310 GGTGAGGCCAGGTTACATTTATCT 60.385 45.833 5.01 0.00 37.17 1.98
289 302 5.163237 GGTGAGGCCAGGTTACATTTATCTA 60.163 44.000 5.01 0.00 37.17 1.98
295 308 7.017651 AGGCCAGGTTACATTTATCTATAAGCT 59.982 37.037 5.01 0.00 36.15 3.74
318 331 6.238484 GCTAGATAGAACCATGACGCAAAAAT 60.238 38.462 0.00 0.00 0.00 1.82
319 332 5.883661 AGATAGAACCATGACGCAAAAATG 58.116 37.500 0.00 0.00 0.00 2.32
322 335 4.487948 AGAACCATGACGCAAAAATGATG 58.512 39.130 0.00 0.00 0.00 3.07
323 336 3.940209 ACCATGACGCAAAAATGATGT 57.060 38.095 0.00 0.00 0.00 3.06
324 337 3.577667 ACCATGACGCAAAAATGATGTG 58.422 40.909 0.00 0.00 0.00 3.21
341 363 4.289410 TGATGTGGGCAATACATAGGCTAT 59.711 41.667 0.00 0.00 38.78 2.97
351 373 5.815723 ATACATAGGCTATGGACCTCCTA 57.184 43.478 31.88 17.17 40.47 2.94
362 384 3.861846 TGGACCTCCTATGTGCTATCAT 58.138 45.455 0.00 0.00 36.82 2.45
375 397 4.764308 TGTGCTATCATACACTTGCCAAAA 59.236 37.500 0.00 0.00 37.68 2.44
376 398 5.095490 GTGCTATCATACACTTGCCAAAAC 58.905 41.667 0.00 0.00 33.92 2.43
420 442 0.107508 CCATCGCCACACTCTTCCAT 60.108 55.000 0.00 0.00 0.00 3.41
430 452 1.273606 CACTCTTCCATGTCGTGACCT 59.726 52.381 0.00 0.00 0.00 3.85
431 453 2.492088 CACTCTTCCATGTCGTGACCTA 59.508 50.000 0.00 0.00 0.00 3.08
432 454 2.492484 ACTCTTCCATGTCGTGACCTAC 59.508 50.000 0.00 0.00 0.00 3.18
443 465 4.400251 TGTCGTGACCTACTAAACCCTATG 59.600 45.833 0.00 0.00 0.00 2.23
448 470 5.046807 GTGACCTACTAAACCCTATGTGTGT 60.047 44.000 0.00 0.00 0.00 3.72
452 474 6.040166 ACCTACTAAACCCTATGTGTGTATCG 59.960 42.308 0.00 0.00 0.00 2.92
462 484 6.127980 CCCTATGTGTGTATCGTCCTATACTG 60.128 46.154 0.00 0.00 34.13 2.74
486 508 1.448717 GCCTGTTCGGAAGCTCTCC 60.449 63.158 0.00 0.00 41.40 3.71
500 522 1.135228 GCTCTCCAGTCTCGAAACTCC 60.135 57.143 0.00 0.00 0.00 3.85
507 529 0.239347 GTCTCGAAACTCCGTTCCGA 59.761 55.000 0.00 0.00 0.00 4.55
552 580 3.278367 CAATTGTGCTGTTGTCCTCTG 57.722 47.619 0.00 0.00 0.00 3.35
554 582 0.181114 TTGTGCTGTTGTCCTCTGCT 59.819 50.000 0.00 0.00 0.00 4.24
555 583 0.181114 TGTGCTGTTGTCCTCTGCTT 59.819 50.000 0.00 0.00 0.00 3.91
556 584 0.871057 GTGCTGTTGTCCTCTGCTTC 59.129 55.000 0.00 0.00 0.00 3.86
558 586 0.250467 GCTGTTGTCCTCTGCTTCCA 60.250 55.000 0.00 0.00 0.00 3.53
559 587 1.815408 GCTGTTGTCCTCTGCTTCCAA 60.815 52.381 0.00 0.00 0.00 3.53
573 603 1.677576 CTTCCAAAGCTGCAGTTGTGA 59.322 47.619 21.31 11.76 0.00 3.58
587 617 3.190118 CAGTTGTGAAGCAGAAAGGATCC 59.810 47.826 2.48 2.48 0.00 3.36
591 621 2.416893 GTGAAGCAGAAAGGATCCGAAC 59.583 50.000 5.98 1.49 0.00 3.95
593 623 3.274288 GAAGCAGAAAGGATCCGAACAT 58.726 45.455 5.98 0.00 0.00 2.71
595 625 2.237143 AGCAGAAAGGATCCGAACATGA 59.763 45.455 5.98 0.00 0.00 3.07
596 626 3.118112 AGCAGAAAGGATCCGAACATGAT 60.118 43.478 5.98 0.00 0.00 2.45
640 671 1.062505 TCCTGGTTTTTGCTTCCCCTT 60.063 47.619 0.00 0.00 0.00 3.95
739 771 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
740 772 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
741 773 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
742 774 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
749 781 9.601217 AGTGATCTAAACGCTCTTATATTTGTT 57.399 29.630 0.00 0.00 0.00 2.83
754 786 8.810427 TCTAAACGCTCTTATATTTGTTTACGG 58.190 33.333 0.00 0.00 32.41 4.02
755 787 7.599630 AAACGCTCTTATATTTGTTTACGGA 57.400 32.000 0.00 0.00 0.00 4.69
756 788 6.823678 ACGCTCTTATATTTGTTTACGGAG 57.176 37.500 0.00 0.00 0.00 4.63
757 789 5.751990 ACGCTCTTATATTTGTTTACGGAGG 59.248 40.000 0.00 0.00 0.00 4.30
758 790 5.176958 CGCTCTTATATTTGTTTACGGAGGG 59.823 44.000 0.00 0.00 0.00 4.30
759 791 6.285990 GCTCTTATATTTGTTTACGGAGGGA 58.714 40.000 0.00 0.00 0.00 4.20
760 792 6.424207 GCTCTTATATTTGTTTACGGAGGGAG 59.576 42.308 0.00 0.00 0.00 4.30
761 793 7.427989 TCTTATATTTGTTTACGGAGGGAGT 57.572 36.000 0.00 0.00 0.00 3.85
762 794 7.854337 TCTTATATTTGTTTACGGAGGGAGTT 58.146 34.615 0.00 0.00 0.00 3.01
770 802 4.904253 TTACGGAGGGAGTTTGTTTTTG 57.096 40.909 0.00 0.00 0.00 2.44
782 814 7.122650 GGGAGTTTGTTTTTGGATAGATGATCA 59.877 37.037 0.00 0.00 36.12 2.92
796 828 5.571784 AGATGATCACGATTGCAATTTGT 57.428 34.783 14.33 12.53 0.00 2.83
804 836 5.686841 TCACGATTGCAATTTGTTTTCTCTG 59.313 36.000 14.33 2.73 0.00 3.35
875 908 1.446907 CCAGCTGGTAGCACTCTTTG 58.553 55.000 25.53 0.00 45.56 2.77
1015 1055 2.030027 CAGGATGGGCTACCTATGGA 57.970 55.000 0.00 0.00 37.76 3.41
1038 1078 4.753877 CGGCTCTCGTCGTTCGCA 62.754 66.667 0.00 0.00 39.67 5.10
1267 1363 3.306472 TTTTGCCGGCTCCCTATAATT 57.694 42.857 29.70 0.00 0.00 1.40
1314 1410 1.396648 TGCGATGTTGCTGGTTAATCG 59.603 47.619 0.00 0.00 42.23 3.34
1326 1422 6.822442 TGCTGGTTAATCGAATTATCTGGTA 58.178 36.000 0.00 0.00 0.00 3.25
1358 1454 3.242518 TCGCTTCGTTGTATCAGAACTG 58.757 45.455 0.00 0.00 0.00 3.16
1419 1515 1.880675 GGAGGTAGATGCGAATCGAGA 59.119 52.381 6.91 0.00 0.00 4.04
1460 1556 8.132995 CCCGCGGAAAATTACTCTTAATAAAAT 58.867 33.333 30.73 0.00 0.00 1.82
1560 1656 4.025896 CGTCATCTGAATTGACATCAGCTC 60.026 45.833 10.91 0.00 42.90 4.09
1568 1664 6.519382 TGAATTGACATCAGCTCGAGATAAT 58.481 36.000 18.75 0.00 0.00 1.28
1615 1711 0.961019 TCATGCAGTTTGCCACTTCC 59.039 50.000 0.00 0.00 44.23 3.46
1650 1746 9.979578 AATTTTTATGTACTGATGACTTTGCAA 57.020 25.926 0.00 0.00 0.00 4.08
1777 1892 8.642935 TCCAAAACATCTTATATTGGTGAACA 57.357 30.769 0.00 0.00 41.02 3.18
1863 1978 4.897509 TCAGTTTCTCCATGTCATCTGT 57.102 40.909 0.00 0.00 0.00 3.41
1864 1979 6.014242 ACTTCAGTTTCTCCATGTCATCTGTA 60.014 38.462 0.00 0.00 0.00 2.74
1865 1980 5.724328 TCAGTTTCTCCATGTCATCTGTAC 58.276 41.667 0.00 0.00 0.00 2.90
1866 1981 5.481824 TCAGTTTCTCCATGTCATCTGTACT 59.518 40.000 0.00 0.00 0.00 2.73
1867 1982 5.809562 CAGTTTCTCCATGTCATCTGTACTC 59.190 44.000 0.00 0.00 0.00 2.59
1868 1983 4.639135 TTCTCCATGTCATCTGTACTCG 57.361 45.455 0.00 0.00 0.00 4.18
1869 1984 2.359214 TCTCCATGTCATCTGTACTCGC 59.641 50.000 0.00 0.00 0.00 5.03
1870 1985 2.360483 CTCCATGTCATCTGTACTCGCT 59.640 50.000 0.00 0.00 0.00 4.93
1871 1986 2.359214 TCCATGTCATCTGTACTCGCTC 59.641 50.000 0.00 0.00 0.00 5.03
1872 1987 2.544694 CCATGTCATCTGTACTCGCTCC 60.545 54.545 0.00 0.00 0.00 4.70
1873 1988 0.733150 TGTCATCTGTACTCGCTCCG 59.267 55.000 0.00 0.00 0.00 4.63
1874 1989 0.733729 GTCATCTGTACTCGCTCCGT 59.266 55.000 0.00 0.00 0.00 4.69
1875 1990 1.015109 TCATCTGTACTCGCTCCGTC 58.985 55.000 0.00 0.00 0.00 4.79
1876 1991 0.029567 CATCTGTACTCGCTCCGTCC 59.970 60.000 0.00 0.00 0.00 4.79
1877 1992 0.107116 ATCTGTACTCGCTCCGTCCT 60.107 55.000 0.00 0.00 0.00 3.85
1878 1993 0.322277 TCTGTACTCGCTCCGTCCTT 60.322 55.000 0.00 0.00 0.00 3.36
1879 1994 0.179161 CTGTACTCGCTCCGTCCTTG 60.179 60.000 0.00 0.00 0.00 3.61
1880 1995 0.607217 TGTACTCGCTCCGTCCTTGA 60.607 55.000 0.00 0.00 0.00 3.02
1881 1996 0.524862 GTACTCGCTCCGTCCTTGAA 59.475 55.000 0.00 0.00 0.00 2.69
1882 1997 1.068055 GTACTCGCTCCGTCCTTGAAA 60.068 52.381 0.00 0.00 0.00 2.69
1883 1998 0.038159 ACTCGCTCCGTCCTTGAAAG 60.038 55.000 0.00 0.00 0.00 2.62
1884 1999 0.243907 CTCGCTCCGTCCTTGAAAGA 59.756 55.000 0.00 0.00 0.00 2.52
1885 2000 0.243907 TCGCTCCGTCCTTGAAAGAG 59.756 55.000 0.00 0.00 0.00 2.85
1886 2001 0.038159 CGCTCCGTCCTTGAAAGAGT 60.038 55.000 0.00 0.00 0.00 3.24
1887 2002 1.433534 GCTCCGTCCTTGAAAGAGTG 58.566 55.000 0.00 0.00 0.00 3.51
1888 2003 1.270358 GCTCCGTCCTTGAAAGAGTGT 60.270 52.381 0.00 0.00 0.00 3.55
1889 2004 2.029290 GCTCCGTCCTTGAAAGAGTGTA 60.029 50.000 0.00 0.00 0.00 2.90
1890 2005 3.576648 CTCCGTCCTTGAAAGAGTGTAC 58.423 50.000 0.00 0.00 0.00 2.90
1891 2006 3.228453 TCCGTCCTTGAAAGAGTGTACT 58.772 45.455 0.00 0.00 0.00 2.73
1892 2007 3.640029 TCCGTCCTTGAAAGAGTGTACTT 59.360 43.478 0.00 0.00 0.00 2.24
1893 2008 3.988517 CCGTCCTTGAAAGAGTGTACTTC 59.011 47.826 0.00 0.00 0.00 3.01
1894 2009 3.988517 CGTCCTTGAAAGAGTGTACTTCC 59.011 47.826 0.00 0.00 0.00 3.46
1895 2010 4.500887 CGTCCTTGAAAGAGTGTACTTCCA 60.501 45.833 0.00 0.00 0.00 3.53
1896 2011 5.365619 GTCCTTGAAAGAGTGTACTTCCAA 58.634 41.667 0.00 0.00 0.00 3.53
1897 2012 5.236695 GTCCTTGAAAGAGTGTACTTCCAAC 59.763 44.000 0.00 0.00 0.00 3.77
1898 2013 5.130477 TCCTTGAAAGAGTGTACTTCCAACT 59.870 40.000 0.00 0.00 0.00 3.16
1899 2014 5.823045 CCTTGAAAGAGTGTACTTCCAACTT 59.177 40.000 0.00 0.00 0.00 2.66
1900 2015 6.318900 CCTTGAAAGAGTGTACTTCCAACTTT 59.681 38.462 0.00 0.00 0.00 2.66
1901 2016 6.677781 TGAAAGAGTGTACTTCCAACTTTG 57.322 37.500 0.00 0.00 0.00 2.77
1902 2017 6.177610 TGAAAGAGTGTACTTCCAACTTTGT 58.822 36.000 0.00 0.00 0.00 2.83
1903 2018 6.657541 TGAAAGAGTGTACTTCCAACTTTGTT 59.342 34.615 0.00 0.00 0.00 2.83
1904 2019 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
1905 2020 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
1906 2021 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
1911 2026 2.358322 TCCAACTTTGTTGGAGGGTC 57.642 50.000 23.38 0.00 43.17 4.46
1912 2027 1.566703 TCCAACTTTGTTGGAGGGTCA 59.433 47.619 23.38 5.39 43.17 4.02
1913 2028 2.024846 TCCAACTTTGTTGGAGGGTCAA 60.025 45.455 23.38 4.76 43.17 3.18
1914 2029 2.763448 CCAACTTTGTTGGAGGGTCAAA 59.237 45.455 21.06 0.00 42.06 2.69
1915 2030 3.430236 CCAACTTTGTTGGAGGGTCAAAC 60.430 47.826 21.06 0.00 42.06 2.93
1916 2031 3.382083 ACTTTGTTGGAGGGTCAAACT 57.618 42.857 0.00 0.00 0.00 2.66
1917 2032 4.513406 ACTTTGTTGGAGGGTCAAACTA 57.487 40.909 0.00 0.00 0.00 2.24
1918 2033 5.061721 ACTTTGTTGGAGGGTCAAACTAT 57.938 39.130 0.00 0.00 0.00 2.12
1919 2034 5.070685 ACTTTGTTGGAGGGTCAAACTATC 58.929 41.667 0.00 0.00 0.00 2.08
1920 2035 4.993705 TTGTTGGAGGGTCAAACTATCT 57.006 40.909 0.00 0.00 0.00 1.98
1921 2036 4.553330 TGTTGGAGGGTCAAACTATCTC 57.447 45.455 0.00 0.00 0.00 2.75
1922 2037 3.907474 TGTTGGAGGGTCAAACTATCTCA 59.093 43.478 0.00 0.00 0.00 3.27
1923 2038 4.349636 TGTTGGAGGGTCAAACTATCTCAA 59.650 41.667 0.00 0.00 0.00 3.02
1924 2039 5.163141 TGTTGGAGGGTCAAACTATCTCAAA 60.163 40.000 0.00 0.00 0.00 2.69
1925 2040 5.165961 TGGAGGGTCAAACTATCTCAAAG 57.834 43.478 0.00 0.00 0.00 2.77
1926 2041 4.597507 TGGAGGGTCAAACTATCTCAAAGT 59.402 41.667 0.00 0.00 0.00 2.66
1927 2042 5.073144 TGGAGGGTCAAACTATCTCAAAGTT 59.927 40.000 0.00 0.00 38.82 2.66
1928 2043 6.004574 GGAGGGTCAAACTATCTCAAAGTTT 58.995 40.000 0.00 0.00 45.64 2.66
1935 2050 6.787085 AAACTATCTCAAAGTTTGGTCGAG 57.213 37.500 15.47 10.38 43.66 4.04
1936 2051 5.470047 ACTATCTCAAAGTTTGGTCGAGT 57.530 39.130 15.47 10.94 0.00 4.18
1937 2052 5.855045 ACTATCTCAAAGTTTGGTCGAGTT 58.145 37.500 15.47 3.83 0.00 3.01
1938 2053 6.289064 ACTATCTCAAAGTTTGGTCGAGTTT 58.711 36.000 15.47 1.90 0.00 2.66
1939 2054 4.875544 TCTCAAAGTTTGGTCGAGTTTG 57.124 40.909 15.47 0.00 38.28 2.93
1940 2055 4.258543 TCTCAAAGTTTGGTCGAGTTTGT 58.741 39.130 15.47 0.00 38.17 2.83
1941 2056 4.094294 TCTCAAAGTTTGGTCGAGTTTGTG 59.906 41.667 15.47 0.00 38.17 3.33
1942 2057 2.844122 AAGTTTGGTCGAGTTTGTGC 57.156 45.000 0.00 0.00 0.00 4.57
1943 2058 1.745232 AGTTTGGTCGAGTTTGTGCA 58.255 45.000 0.00 0.00 0.00 4.57
1944 2059 2.088423 AGTTTGGTCGAGTTTGTGCAA 58.912 42.857 0.00 0.00 0.00 4.08
1945 2060 2.490115 AGTTTGGTCGAGTTTGTGCAAA 59.510 40.909 0.00 0.00 0.00 3.68
1946 2061 3.057174 AGTTTGGTCGAGTTTGTGCAAAA 60.057 39.130 0.00 0.00 31.33 2.44
1947 2062 3.577649 TTGGTCGAGTTTGTGCAAAAA 57.422 38.095 0.00 0.00 31.33 1.94
1948 2063 3.791973 TGGTCGAGTTTGTGCAAAAAT 57.208 38.095 5.11 0.00 31.33 1.82
1949 2064 4.902443 TGGTCGAGTTTGTGCAAAAATA 57.098 36.364 5.11 0.00 31.33 1.40
1950 2065 5.446143 TGGTCGAGTTTGTGCAAAAATAT 57.554 34.783 5.11 0.00 31.33 1.28
1951 2066 6.561737 TGGTCGAGTTTGTGCAAAAATATA 57.438 33.333 5.11 0.00 31.33 0.86
1952 2067 7.151999 TGGTCGAGTTTGTGCAAAAATATAT 57.848 32.000 5.11 0.00 31.33 0.86
1953 2068 7.247728 TGGTCGAGTTTGTGCAAAAATATATC 58.752 34.615 5.11 1.66 31.33 1.63
1954 2069 7.094592 TGGTCGAGTTTGTGCAAAAATATATCA 60.095 33.333 5.11 0.00 31.33 2.15
1955 2070 7.753132 GGTCGAGTTTGTGCAAAAATATATCAA 59.247 33.333 5.11 0.00 31.33 2.57
1956 2071 9.289303 GTCGAGTTTGTGCAAAAATATATCAAT 57.711 29.630 5.11 0.00 31.33 2.57
1957 2072 9.288124 TCGAGTTTGTGCAAAAATATATCAATG 57.712 29.630 5.11 0.00 31.33 2.82
1958 2073 8.051909 CGAGTTTGTGCAAAAATATATCAATGC 58.948 33.333 5.11 8.75 31.33 3.56
1959 2074 9.090692 GAGTTTGTGCAAAAATATATCAATGCT 57.909 29.630 5.11 0.00 34.97 3.79
1960 2075 9.439500 AGTTTGTGCAAAAATATATCAATGCTT 57.561 25.926 5.11 0.00 34.97 3.91
1961 2076 9.480538 GTTTGTGCAAAAATATATCAATGCTTG 57.519 29.630 5.11 0.00 34.97 4.01
1962 2077 8.774890 TTGTGCAAAAATATATCAATGCTTGT 57.225 26.923 14.10 0.00 34.97 3.16
1963 2078 8.187354 TGTGCAAAAATATATCAATGCTTGTG 57.813 30.769 14.10 0.24 34.97 3.33
1964 2079 8.033626 TGTGCAAAAATATATCAATGCTTGTGA 58.966 29.630 14.10 0.00 34.97 3.58
1965 2080 8.871862 GTGCAAAAATATATCAATGCTTGTGAA 58.128 29.630 14.10 0.00 34.97 3.18
1966 2081 9.433153 TGCAAAAATATATCAATGCTTGTGAAA 57.567 25.926 14.10 0.00 34.97 2.69
1967 2082 9.693157 GCAAAAATATATCAATGCTTGTGAAAC 57.307 29.630 8.52 0.00 37.35 2.78
1969 2084 9.941325 AAAAATATATCAATGCTTGTGAAACCA 57.059 25.926 0.00 0.00 34.36 3.67
1970 2085 9.941325 AAAATATATCAATGCTTGTGAAACCAA 57.059 25.926 0.00 0.00 34.36 3.67
1971 2086 9.941325 AAATATATCAATGCTTGTGAAACCAAA 57.059 25.926 0.00 0.00 34.36 3.28
1975 2090 5.782047 TCAATGCTTGTGAAACCAAATAGG 58.218 37.500 0.00 0.00 45.67 2.57
2041 2156 0.968901 TTGGAGCACCCGACGACTAT 60.969 55.000 0.00 0.00 37.93 2.12
2192 2492 5.068198 ACAACTGTTTTCTCTGACATGCATT 59.932 36.000 0.00 0.00 0.00 3.56
2219 2519 0.877649 CACGCGCTATCTGCCTCAAT 60.878 55.000 5.73 0.00 38.78 2.57
2261 2563 1.477700 CATCAATTCAATGCACCCCGT 59.522 47.619 0.00 0.00 0.00 5.28
2362 2665 2.078452 CTCCTGCCCCTTCTTTCCA 58.922 57.895 0.00 0.00 0.00 3.53
2443 2747 2.049156 CGTCACTCGAGCTTGCCA 60.049 61.111 13.61 0.00 42.86 4.92
2571 2877 0.740868 CGATGCCATCCAACACGAGT 60.741 55.000 0.00 0.00 0.00 4.18
2677 2983 0.463654 GGCCAGCGATAACATCACCA 60.464 55.000 0.00 0.00 0.00 4.17
2698 3005 1.207089 TCGGGACAACTTCCTAGCATG 59.793 52.381 0.00 0.00 45.09 4.06
2748 3060 1.453155 CGTCAAGCTTTGTATGGCCT 58.547 50.000 3.32 0.00 0.00 5.19
2835 3147 4.994201 TCAGCGGACGCACACGAC 62.994 66.667 19.48 0.00 43.93 4.34
2869 3184 8.850156 CAACTAAAATCCTCTTCTCTGGAAAAA 58.150 33.333 0.00 0.00 35.81 1.94
2897 3212 8.946085 TGTTTGGAATAAAATCAGTAGTAGCAG 58.054 33.333 0.00 0.00 0.00 4.24
2902 3217 3.444703 AAATCAGTAGTAGCAGCCGAG 57.555 47.619 0.00 0.00 0.00 4.63
2903 3218 2.350057 ATCAGTAGTAGCAGCCGAGA 57.650 50.000 0.00 0.00 0.00 4.04
3024 3339 1.535204 TTCTGTACCCGAACGTCCCC 61.535 60.000 0.00 0.00 0.00 4.81
3044 3361 7.208080 GTCCCCGCGTAGATATAATAAATGAT 58.792 38.462 4.92 0.00 0.00 2.45
3046 3363 6.645415 CCCCGCGTAGATATAATAAATGATCC 59.355 42.308 4.92 0.00 0.00 3.36
3068 3385 5.011635 TCCAGAACATGTAGCTACTGTTTCA 59.988 40.000 27.46 16.50 33.46 2.69
3139 3456 2.567615 GTGGCTCGGATCCCAATATAGT 59.432 50.000 6.06 0.00 31.90 2.12
3145 3462 3.039011 CGGATCCCAATATAGTAGGGGG 58.961 54.545 6.06 0.00 43.03 5.40
3147 3464 4.445564 GGATCCCAATATAGTAGGGGGTT 58.554 47.826 0.00 0.00 43.03 4.11
3163 3480 1.287425 GGTTGGCCGAGATTTCGTAG 58.713 55.000 4.82 0.00 45.28 3.51
3167 3484 1.152383 GGCCGAGATTTCGTAGGTGC 61.152 60.000 4.82 0.39 45.28 5.01
3197 3514 0.105039 GTGCTCCTAATCCACCTCCG 59.895 60.000 0.00 0.00 0.00 4.63
3198 3515 0.032515 TGCTCCTAATCCACCTCCGA 60.033 55.000 0.00 0.00 0.00 4.55
3199 3516 1.120530 GCTCCTAATCCACCTCCGAA 58.879 55.000 0.00 0.00 0.00 4.30
3200 3517 1.694696 GCTCCTAATCCACCTCCGAAT 59.305 52.381 0.00 0.00 0.00 3.34
3201 3518 2.897969 GCTCCTAATCCACCTCCGAATA 59.102 50.000 0.00 0.00 0.00 1.75
3202 3519 3.515901 GCTCCTAATCCACCTCCGAATAT 59.484 47.826 0.00 0.00 0.00 1.28
3203 3520 4.710375 GCTCCTAATCCACCTCCGAATATA 59.290 45.833 0.00 0.00 0.00 0.86
3204 3521 5.187186 GCTCCTAATCCACCTCCGAATATAA 59.813 44.000 0.00 0.00 0.00 0.98
3205 3522 6.127026 GCTCCTAATCCACCTCCGAATATAAT 60.127 42.308 0.00 0.00 0.00 1.28
3206 3523 7.182817 TCCTAATCCACCTCCGAATATAATG 57.817 40.000 0.00 0.00 0.00 1.90
3207 3524 5.817816 CCTAATCCACCTCCGAATATAATGC 59.182 44.000 0.00 0.00 0.00 3.56
3208 3525 5.505181 AATCCACCTCCGAATATAATGCT 57.495 39.130 0.00 0.00 0.00 3.79
3209 3526 6.620877 AATCCACCTCCGAATATAATGCTA 57.379 37.500 0.00 0.00 0.00 3.49
3210 3527 5.401531 TCCACCTCCGAATATAATGCTAC 57.598 43.478 0.00 0.00 0.00 3.58
3211 3528 5.084519 TCCACCTCCGAATATAATGCTACT 58.915 41.667 0.00 0.00 0.00 2.57
3212 3529 6.250711 TCCACCTCCGAATATAATGCTACTA 58.749 40.000 0.00 0.00 0.00 1.82
3213 3530 6.722590 TCCACCTCCGAATATAATGCTACTAA 59.277 38.462 0.00 0.00 0.00 2.24
3214 3531 7.399191 TCCACCTCCGAATATAATGCTACTAAT 59.601 37.037 0.00 0.00 0.00 1.73
3215 3532 8.041323 CCACCTCCGAATATAATGCTACTAATT 58.959 37.037 0.00 0.00 0.00 1.40
3216 3533 9.436957 CACCTCCGAATATAATGCTACTAATTT 57.563 33.333 0.00 0.00 0.00 1.82
3217 3534 9.436957 ACCTCCGAATATAATGCTACTAATTTG 57.563 33.333 0.00 0.00 0.00 2.32
3218 3535 9.653287 CCTCCGAATATAATGCTACTAATTTGA 57.347 33.333 0.00 0.00 0.00 2.69
3222 3539 9.708222 CGAATATAATGCTACTAATTTGATGGC 57.292 33.333 0.00 0.00 0.00 4.40
3229 3546 9.701098 AATGCTACTAATTTGATGGCATAAATG 57.299 29.630 0.00 0.32 37.85 2.32
3230 3547 8.236585 TGCTACTAATTTGATGGCATAAATGT 57.763 30.769 0.00 5.58 0.00 2.71
3231 3548 8.694540 TGCTACTAATTTGATGGCATAAATGTT 58.305 29.630 0.00 0.57 0.00 2.71
3232 3549 8.971321 GCTACTAATTTGATGGCATAAATGTTG 58.029 33.333 0.00 5.40 0.00 3.33
3233 3550 9.467258 CTACTAATTTGATGGCATAAATGTTGG 57.533 33.333 0.00 2.80 0.00 3.77
3234 3551 7.850193 ACTAATTTGATGGCATAAATGTTGGT 58.150 30.769 0.00 3.42 0.00 3.67
3235 3552 8.976353 ACTAATTTGATGGCATAAATGTTGGTA 58.024 29.630 0.00 0.00 0.00 3.25
3236 3553 9.248291 CTAATTTGATGGCATAAATGTTGGTAC 57.752 33.333 0.00 0.00 0.00 3.34
3237 3554 6.596309 TTTGATGGCATAAATGTTGGTACA 57.404 33.333 0.00 0.00 38.95 2.90
3238 3555 6.788598 TTGATGGCATAAATGTTGGTACAT 57.211 33.333 0.00 0.00 46.85 2.29
3253 3570 9.891828 ATGTTGGTACATTATTGTATAAATGCG 57.108 29.630 0.00 0.00 42.29 4.73
3254 3571 8.346300 TGTTGGTACATTATTGTATAAATGCGG 58.654 33.333 0.00 0.00 40.35 5.69
3255 3572 8.347035 GTTGGTACATTATTGTATAAATGCGGT 58.653 33.333 0.00 0.00 40.35 5.68
3256 3573 8.090250 TGGTACATTATTGTATAAATGCGGTC 57.910 34.615 0.00 0.00 40.35 4.79
3257 3574 7.715686 TGGTACATTATTGTATAAATGCGGTCA 59.284 33.333 0.00 0.00 40.35 4.02
3258 3575 8.561212 GGTACATTATTGTATAAATGCGGTCAA 58.439 33.333 0.00 0.00 40.35 3.18
3259 3576 9.938670 GTACATTATTGTATAAATGCGGTCAAA 57.061 29.630 1.08 0.00 40.35 2.69
3260 3577 8.850454 ACATTATTGTATAAATGCGGTCAAAC 57.150 30.769 0.00 0.00 36.72 2.93
3261 3578 8.462811 ACATTATTGTATAAATGCGGTCAAACA 58.537 29.630 0.00 0.00 36.72 2.83
3262 3579 9.462174 CATTATTGTATAAATGCGGTCAAACAT 57.538 29.630 0.00 0.00 0.00 2.71
3266 3583 9.862371 ATTGTATAAATGCGGTCAAACATAAAA 57.138 25.926 0.00 0.00 0.00 1.52
3267 3584 9.692749 TTGTATAAATGCGGTCAAACATAAAAA 57.307 25.926 0.00 0.00 0.00 1.94
3289 3606 8.445275 AAAAAGTTTGACTTTCCAACAAAGTT 57.555 26.923 6.53 0.00 46.78 2.66
3290 3607 7.420184 AAAGTTTGACTTTCCAACAAAGTTG 57.580 32.000 0.00 3.00 44.47 3.16
3291 3608 5.478407 AGTTTGACTTTCCAACAAAGTTGG 58.522 37.500 20.09 20.09 40.27 3.77
3292 3609 5.245075 AGTTTGACTTTCCAACAAAGTTGGA 59.755 36.000 23.64 23.64 46.08 3.53
3300 3617 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
3301 3618 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
3302 3619 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
3303 3620 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
3304 3621 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
3305 3622 7.312899 CAACAAAGTTGGAAGTACACTCTTTT 58.687 34.615 2.05 0.00 0.00 2.27
3306 3623 8.455682 CAACAAAGTTGGAAGTACACTCTTTTA 58.544 33.333 2.05 0.00 0.00 1.52
3307 3624 8.570068 ACAAAGTTGGAAGTACACTCTTTTAA 57.430 30.769 0.00 0.00 0.00 1.52
3308 3625 8.674607 ACAAAGTTGGAAGTACACTCTTTTAAG 58.325 33.333 0.00 0.00 0.00 1.85
3309 3626 7.803279 AAGTTGGAAGTACACTCTTTTAAGG 57.197 36.000 0.00 0.00 0.00 2.69
3310 3627 7.133133 AGTTGGAAGTACACTCTTTTAAGGA 57.867 36.000 0.00 0.00 0.00 3.36
3311 3628 7.571025 AGTTGGAAGTACACTCTTTTAAGGAA 58.429 34.615 0.00 0.00 0.00 3.36
3312 3629 7.715686 AGTTGGAAGTACACTCTTTTAAGGAAG 59.284 37.037 0.00 0.00 0.00 3.46
3313 3630 6.531021 TGGAAGTACACTCTTTTAAGGAAGG 58.469 40.000 0.00 0.00 0.00 3.46
3314 3631 6.328148 TGGAAGTACACTCTTTTAAGGAAGGA 59.672 38.462 0.00 0.00 0.00 3.36
3315 3632 6.874664 GGAAGTACACTCTTTTAAGGAAGGAG 59.125 42.308 0.00 0.00 44.60 3.69
3316 3633 6.361768 AGTACACTCTTTTAAGGAAGGAGG 57.638 41.667 0.00 0.00 43.66 4.30
3318 3635 4.240323 ACACTCTTTTAAGGAAGGAGGGA 58.760 43.478 7.08 0.00 45.18 4.20
3328 3645 2.176148 AGGAAGGAGGGAGTAGACTAGC 59.824 54.545 0.00 0.00 0.00 3.42
3425 3742 3.482436 TGGCGTGAAAAGACAATAAGGT 58.518 40.909 0.00 0.00 22.12 3.50
3426 3743 3.252215 TGGCGTGAAAAGACAATAAGGTG 59.748 43.478 0.00 0.00 22.12 4.00
3479 3876 3.998341 CTCCAACAGATGCCCAAAAATTG 59.002 43.478 0.00 0.00 0.00 2.32
3561 3969 1.228737 GCCCTAAAACTGGTGCCCA 60.229 57.895 0.00 0.00 0.00 5.36
3579 3987 3.734902 GCCCATAAAATTTGAGAGCCACG 60.735 47.826 0.00 0.00 0.00 4.94
3751 4201 4.479993 GAGCGCAGTGGGATGGCT 62.480 66.667 11.47 0.00 36.51 4.75
3764 4214 2.019897 GATGGCTGAAATTGGGCGGG 62.020 60.000 0.00 0.00 0.00 6.13
3766 4216 1.758122 GGCTGAAATTGGGCGGGAT 60.758 57.895 0.00 0.00 0.00 3.85
3846 4296 1.758514 ATCGAGATGGCGGTGAGGT 60.759 57.895 0.00 0.00 0.00 3.85
3877 4327 1.134694 GTGAATGTTCGCTTCGGGC 59.865 57.895 0.00 0.00 34.94 6.13
3926 4381 5.310409 TCTTTTAGGGCAGCAGCTTATAT 57.690 39.130 0.00 0.00 41.70 0.86
3952 4407 6.047870 TGCATCACTTGTAGCAAAATTTTGT 58.952 32.000 27.13 17.86 40.24 2.83
3993 4448 7.509236 TTTTGGGCATCATATAGCTATAGGA 57.491 36.000 25.59 25.59 34.06 2.94
3998 4453 6.295575 GGGCATCATATAGCTATAGGACATCC 60.296 46.154 25.83 23.45 32.59 3.51
4050 4506 0.601057 AACGGCAGTTTTATGGGCAC 59.399 50.000 0.00 0.00 37.26 5.01
4052 4508 1.302383 CGGCAGTTTTATGGGCACGA 61.302 55.000 0.00 0.00 0.00 4.35
4062 4518 7.855904 CAGTTTTATGGGCACGATTACTATTTC 59.144 37.037 0.00 0.00 0.00 2.17
4070 4526 4.083802 GCACGATTACTATTTCAGGGCATC 60.084 45.833 0.00 0.00 0.00 3.91
4091 4547 5.843673 TCTGTTGTAGATGCTCTAAGAGG 57.156 43.478 0.00 0.00 29.58 3.69
4188 4644 9.537848 CCTATTTGTCGTGTCTAATTTGTTAAC 57.462 33.333 0.00 0.00 0.00 2.01
4221 4677 4.272504 ACGATTGTGACTTGGTGTAAACTG 59.727 41.667 0.00 0.00 0.00 3.16
4288 4744 3.579534 TGGTTTGCAGGTTTAGTGGTA 57.420 42.857 0.00 0.00 0.00 3.25
4300 4756 6.148811 CAGGTTTAGTGGTAATTGTGGTACTG 59.851 42.308 0.00 0.00 0.00 2.74
4307 4763 5.995897 GTGGTAATTGTGGTACTGGATATCC 59.004 44.000 15.39 15.39 0.00 2.59
4388 4844 6.435277 ACATCCATTATACCCTGATGCATTTC 59.565 38.462 0.00 0.00 37.02 2.17
4427 4884 2.722094 TGTATGGGGTGCAATGAACTC 58.278 47.619 0.00 0.00 0.00 3.01
4435 4892 2.102252 GGTGCAATGAACTCCCAACAAA 59.898 45.455 0.00 0.00 0.00 2.83
4436 4893 3.383761 GTGCAATGAACTCCCAACAAAG 58.616 45.455 0.00 0.00 0.00 2.77
4437 4894 2.364970 TGCAATGAACTCCCAACAAAGG 59.635 45.455 0.00 0.00 0.00 3.11
4493 4950 3.569701 CCTGTGGTTTGAGTAATTGCAGT 59.430 43.478 0.00 0.00 0.00 4.40
4494 4951 4.037923 CCTGTGGTTTGAGTAATTGCAGTT 59.962 41.667 0.00 0.00 0.00 3.16
4505 4962 3.947910 AATTGCAGTTGAACCTGGATG 57.052 42.857 0.00 0.00 32.53 3.51
4524 4981 5.350365 TGGATGTATTGTTCGCACTTACTTC 59.650 40.000 0.00 0.00 0.00 3.01
4533 4990 1.336517 CGCACTTACTTCTCCAACCGA 60.337 52.381 0.00 0.00 0.00 4.69
4586 5043 6.880942 TGTCATTCATGATTTGTGAACTGA 57.119 33.333 0.00 0.00 38.31 3.41
4598 5055 9.996554 TGATTTGTGAACTGACTTCTCTTATAA 57.003 29.630 0.00 0.00 0.00 0.98
4606 5063 9.791820 GAACTGACTTCTCTTATAAGGTAGTTC 57.208 37.037 12.54 14.91 40.12 3.01
4612 5069 9.702253 ACTTCTCTTATAAGGTAGTTCTGATCA 57.298 33.333 12.54 0.00 0.00 2.92
4642 5099 8.026026 TGATGTTTCTGCTTTATTTGCGAATTA 58.974 29.630 4.06 0.00 0.00 1.40
4675 5132 9.123902 TGCAACTATGTGATGAATTAGCTATTT 57.876 29.630 0.00 0.00 0.00 1.40
4710 5167 8.600449 TTGTGGTTTGTGATAATGGAAAATTC 57.400 30.769 0.00 0.00 0.00 2.17
4723 5180 9.938280 ATAATGGAAAATTCAGCATTATGATGG 57.062 29.630 10.66 0.00 34.09 3.51
4724 5181 6.795144 TGGAAAATTCAGCATTATGATGGT 57.205 33.333 10.66 0.00 44.42 3.55
4725 5182 7.894753 TGGAAAATTCAGCATTATGATGGTA 57.105 32.000 10.66 0.00 41.82 3.25
4726 5183 7.715657 TGGAAAATTCAGCATTATGATGGTAC 58.284 34.615 10.66 0.00 41.82 3.34
4783 5240 5.733620 ATGAAGTTGAAAGACCATGCAAT 57.266 34.783 0.00 0.00 0.00 3.56
4812 5269 1.945394 CTACCTTGGCATGCATCTGAC 59.055 52.381 21.36 0.64 0.00 3.51
5120 5581 5.248248 TGTGAGATGGACAGAGACCAATAAA 59.752 40.000 0.00 0.00 40.93 1.40
5145 5606 7.603297 AAACAATTTTGTCGTTAATGAGTCG 57.397 32.000 0.00 0.00 41.31 4.18
5166 5627 4.051922 CGGCCTATCTCACTGTTATGTTC 58.948 47.826 0.00 0.00 0.00 3.18
5172 5633 6.980978 CCTATCTCACTGTTATGTTCGTGATT 59.019 38.462 0.00 0.00 36.01 2.57
5181 7478 7.174946 ACTGTTATGTTCGTGATTTCTTCCATT 59.825 33.333 0.00 0.00 0.00 3.16
5191 7488 9.389755 TCGTGATTTCTTCCATTAATATGTTCA 57.610 29.630 0.00 0.00 0.00 3.18
5220 7517 7.940178 TGATATAGCAAGTTTATACACACGG 57.060 36.000 0.00 0.00 0.00 4.94
5221 7518 7.718525 TGATATAGCAAGTTTATACACACGGA 58.281 34.615 0.00 0.00 0.00 4.69
5227 7524 8.361592 AGCAAGTTTATACACACGGATATTAC 57.638 34.615 0.00 0.00 0.00 1.89
5253 7550 2.404265 CGTTGAGCATTTTGTCAGCA 57.596 45.000 0.00 0.00 0.00 4.41
5268 7565 3.896888 TGTCAGCATTCCTGTGGATTTTT 59.103 39.130 0.00 0.00 42.38 1.94
5269 7566 4.240096 GTCAGCATTCCTGTGGATTTTTG 58.760 43.478 0.00 0.00 42.38 2.44
5391 7690 8.585471 AATGTTTATTTGATCTGACAGGTGAT 57.415 30.769 1.81 0.00 0.00 3.06
5392 7691 7.615582 TGTTTATTTGATCTGACAGGTGATC 57.384 36.000 1.81 0.00 39.43 2.92
5503 8301 5.448496 CGTCTGAGTGAATTTGGTTTGTGAA 60.448 40.000 0.00 0.00 0.00 3.18
5519 8317 1.479323 GTGAAGGCATTGCATGATGGT 59.521 47.619 11.39 0.00 0.00 3.55
5525 8323 0.387929 CATTGCATGATGGTGAGGGC 59.612 55.000 0.00 0.00 0.00 5.19
5535 8333 2.045536 GTGAGGGCCAGCCAAGAG 60.046 66.667 11.50 0.00 37.98 2.85
5569 8367 1.488390 CAGACCATTTTGGGGGATGG 58.512 55.000 1.02 1.02 46.57 3.51
5583 8381 0.038166 GGATGGCAGTGGTTTCCTGA 59.962 55.000 0.00 0.00 31.38 3.86
5584 8382 1.547675 GGATGGCAGTGGTTTCCTGAA 60.548 52.381 0.00 0.00 31.38 3.02
5601 8399 4.019860 TCCTGAAATTCTTGGGAGTCTGAG 60.020 45.833 0.00 0.00 0.00 3.35
5661 8459 4.096984 GGACTATCCAGGCAAACATTTCTG 59.903 45.833 0.00 0.00 36.28 3.02
5684 8490 5.835819 TGAAATGTCACACCCTTCCATTTAA 59.164 36.000 0.00 0.00 36.24 1.52
5688 8494 3.056821 GTCACACCCTTCCATTTAAAGGC 60.057 47.826 0.00 0.00 41.70 4.35
5700 8506 5.124776 TCCATTTAAAGGCGTGGTTGAATAG 59.875 40.000 5.65 0.00 33.47 1.73
5749 8555 4.461081 GCTCTGGATAGGGTATGAGTACTG 59.539 50.000 0.00 0.00 0.00 2.74
5768 8574 2.165030 CTGACCAATTCATGCTTCCACC 59.835 50.000 0.00 0.00 32.17 4.61
5769 8575 2.225091 TGACCAATTCATGCTTCCACCT 60.225 45.455 0.00 0.00 0.00 4.00
5770 8576 3.010027 TGACCAATTCATGCTTCCACCTA 59.990 43.478 0.00 0.00 0.00 3.08
5773 8587 4.019174 CCAATTCATGCTTCCACCTACTT 58.981 43.478 0.00 0.00 0.00 2.24
5787 8601 2.835764 ACCTACTTCGCCATGTAAAGGA 59.164 45.455 0.00 0.00 0.00 3.36
5804 8618 8.934023 TGTAAAGGAGTAATTTTCAACCATCT 57.066 30.769 0.00 0.00 0.00 2.90
5807 8621 7.611213 AAGGAGTAATTTTCAACCATCTACG 57.389 36.000 0.00 0.00 0.00 3.51
5851 8665 9.627123 AAATTAGTATTGCATACTCTTAAGCCA 57.373 29.630 10.76 0.00 44.55 4.75
5854 8668 7.072263 AGTATTGCATACTCTTAAGCCATCT 57.928 36.000 0.00 0.00 42.17 2.90
5941 8755 5.130975 TGGTGTCATCATATTAGGTTGAGCT 59.869 40.000 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.628630 TTTTTGGTTTTTGTTCTTTCTCCATT 57.371 26.923 0.00 0.00 0.00 3.16
3 4 6.652900 CCTTTTTGGTTTTTGTTCTTTCTCCA 59.347 34.615 0.00 0.00 0.00 3.86
4 5 6.876789 TCCTTTTTGGTTTTTGTTCTTTCTCC 59.123 34.615 0.00 0.00 37.07 3.71
5 6 7.899178 TCCTTTTTGGTTTTTGTTCTTTCTC 57.101 32.000 0.00 0.00 37.07 2.87
6 7 8.684386 TTTCCTTTTTGGTTTTTGTTCTTTCT 57.316 26.923 0.00 0.00 37.07 2.52
7 8 9.737427 TTTTTCCTTTTTGGTTTTTGTTCTTTC 57.263 25.926 0.00 0.00 37.07 2.62
101 102 7.781056 TGTTTTCCTTTTCATTTCTACTTGCT 58.219 30.769 0.00 0.00 0.00 3.91
106 107 8.817100 CCTGTTTGTTTTCCTTTTCATTTCTAC 58.183 33.333 0.00 0.00 0.00 2.59
119 120 5.391523 GGTTTTCTTTGCCTGTTTGTTTTCC 60.392 40.000 0.00 0.00 0.00 3.13
160 161 7.750769 TCTTTTTCGTTCTTTCTTTCGGTTTA 58.249 30.769 0.00 0.00 0.00 2.01
166 167 8.576281 GTGTCTTTCTTTTTCGTTCTTTCTTTC 58.424 33.333 0.00 0.00 0.00 2.62
178 179 5.171516 GCTTTGCGTAGTGTCTTTCTTTTTC 59.828 40.000 0.00 0.00 0.00 2.29
195 208 2.284401 CGTTGTTTTTCACTGCTTTGCG 60.284 45.455 0.00 0.00 0.00 4.85
201 214 4.041723 ACAATAGCGTTGTTTTTCACTGC 58.958 39.130 4.91 0.00 0.00 4.40
218 231 5.661312 AGTATTGGGCAGACTCAGTACAATA 59.339 40.000 0.00 0.00 31.32 1.90
219 232 4.471386 AGTATTGGGCAGACTCAGTACAAT 59.529 41.667 0.00 0.00 31.32 2.71
220 233 3.838317 AGTATTGGGCAGACTCAGTACAA 59.162 43.478 0.00 0.00 31.32 2.41
222 235 5.793030 ATAGTATTGGGCAGACTCAGTAC 57.207 43.478 0.00 0.00 0.00 2.73
223 236 5.477291 GCTATAGTATTGGGCAGACTCAGTA 59.523 44.000 0.84 0.00 0.00 2.74
224 237 4.282195 GCTATAGTATTGGGCAGACTCAGT 59.718 45.833 0.84 0.00 0.00 3.41
225 238 4.617067 CGCTATAGTATTGGGCAGACTCAG 60.617 50.000 0.84 0.00 0.00 3.35
226 239 3.255888 CGCTATAGTATTGGGCAGACTCA 59.744 47.826 0.84 0.00 0.00 3.41
228 241 3.497332 TCGCTATAGTATTGGGCAGACT 58.503 45.455 0.84 0.00 0.00 3.24
229 242 3.936372 TCGCTATAGTATTGGGCAGAC 57.064 47.619 0.84 0.00 0.00 3.51
230 243 3.447586 GGATCGCTATAGTATTGGGCAGA 59.552 47.826 0.84 3.16 0.00 4.26
231 244 3.735208 CGGATCGCTATAGTATTGGGCAG 60.735 52.174 0.84 0.00 0.00 4.85
232 245 2.165641 CGGATCGCTATAGTATTGGGCA 59.834 50.000 0.84 0.00 0.00 5.36
233 246 2.426024 TCGGATCGCTATAGTATTGGGC 59.574 50.000 0.84 0.00 0.00 5.36
238 251 3.628487 GCTTCCTCGGATCGCTATAGTAT 59.372 47.826 0.84 0.00 0.00 2.12
243 256 1.271102 GAAGCTTCCTCGGATCGCTAT 59.729 52.381 15.97 3.05 33.18 2.97
251 264 0.108424 CTCACCTGAAGCTTCCTCGG 60.108 60.000 23.42 21.00 0.00 4.63
252 265 0.108424 CCTCACCTGAAGCTTCCTCG 60.108 60.000 23.42 12.68 0.00 4.63
267 280 6.763715 ATAGATAAATGTAACCTGGCCTCA 57.236 37.500 3.32 0.00 0.00 3.86
285 298 8.898761 CGTCATGGTTCTATCTAGCTTATAGAT 58.101 37.037 15.46 10.07 36.19 1.98
288 301 6.433093 TGCGTCATGGTTCTATCTAGCTTATA 59.567 38.462 0.00 0.00 0.00 0.98
289 302 5.243954 TGCGTCATGGTTCTATCTAGCTTAT 59.756 40.000 0.00 0.00 0.00 1.73
295 308 6.821160 TCATTTTTGCGTCATGGTTCTATCTA 59.179 34.615 0.00 0.00 0.00 1.98
301 314 4.090354 CACATCATTTTTGCGTCATGGTTC 59.910 41.667 0.00 0.00 0.00 3.62
318 331 2.442878 AGCCTATGTATTGCCCACATCA 59.557 45.455 0.00 0.00 37.74 3.07
319 332 3.146104 AGCCTATGTATTGCCCACATC 57.854 47.619 0.00 0.00 37.74 3.06
322 335 3.009033 TCCATAGCCTATGTATTGCCCAC 59.991 47.826 10.69 0.00 34.36 4.61
323 336 3.009033 GTCCATAGCCTATGTATTGCCCA 59.991 47.826 10.69 0.00 34.36 5.36
324 337 3.610911 GTCCATAGCCTATGTATTGCCC 58.389 50.000 10.69 0.00 34.36 5.36
341 363 3.328535 TGATAGCACATAGGAGGTCCA 57.671 47.619 0.00 0.00 38.89 4.02
351 373 4.155063 TGGCAAGTGTATGATAGCACAT 57.845 40.909 7.54 0.00 38.02 3.21
362 384 7.461182 AATATAAGCAGTTTTGGCAAGTGTA 57.539 32.000 0.00 0.00 0.00 2.90
375 397 6.723977 TGTTTGGGAGGAAAAATATAAGCAGT 59.276 34.615 0.00 0.00 0.00 4.40
376 398 7.035612 GTGTTTGGGAGGAAAAATATAAGCAG 58.964 38.462 0.00 0.00 0.00 4.24
420 442 2.880443 AGGGTTTAGTAGGTCACGACA 58.120 47.619 0.00 0.00 0.00 4.35
430 452 6.039717 GGACGATACACACATAGGGTTTAGTA 59.960 42.308 0.00 0.00 34.16 1.82
431 453 5.163478 GGACGATACACACATAGGGTTTAGT 60.163 44.000 0.00 0.00 34.16 2.24
432 454 5.068723 AGGACGATACACACATAGGGTTTAG 59.931 44.000 0.00 0.00 34.16 1.85
443 465 4.832590 AGCAGTATAGGACGATACACAC 57.167 45.455 5.58 0.00 35.16 3.82
448 470 4.008330 GGCACTAGCAGTATAGGACGATA 58.992 47.826 0.00 0.00 44.61 2.92
452 474 2.959707 ACAGGCACTAGCAGTATAGGAC 59.040 50.000 0.00 0.00 44.61 3.85
462 484 1.362406 GCTTCCGAACAGGCACTAGC 61.362 60.000 0.00 0.00 40.77 3.42
540 568 2.260844 TTGGAAGCAGAGGACAACAG 57.739 50.000 0.00 0.00 0.00 3.16
554 582 1.761449 TCACAACTGCAGCTTTGGAA 58.239 45.000 15.27 1.82 0.00 3.53
555 583 1.677576 CTTCACAACTGCAGCTTTGGA 59.322 47.619 15.27 8.58 0.00 3.53
556 584 1.866880 GCTTCACAACTGCAGCTTTGG 60.867 52.381 15.27 6.44 0.00 3.28
558 586 1.066605 CTGCTTCACAACTGCAGCTTT 59.933 47.619 15.27 0.00 45.76 3.51
559 587 0.666913 CTGCTTCACAACTGCAGCTT 59.333 50.000 15.27 4.59 45.76 3.74
573 603 2.859165 TGTTCGGATCCTTTCTGCTT 57.141 45.000 10.75 0.00 0.00 3.91
577 607 5.365021 AAGATCATGTTCGGATCCTTTCT 57.635 39.130 10.75 0.00 41.64 2.52
580 610 7.072263 AGAATAAGATCATGTTCGGATCCTT 57.928 36.000 10.75 0.00 41.64 3.36
640 671 9.522804 AACTAAAAACAAAAGTTGCAATCGATA 57.477 25.926 0.59 0.00 32.38 2.92
715 747 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
716 748 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
723 755 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
728 760 8.810427 CCGTAAACAAATATAAGAGCGTTTAGA 58.190 33.333 0.00 0.00 31.53 2.10
729 761 8.810427 TCCGTAAACAAATATAAGAGCGTTTAG 58.190 33.333 0.00 0.00 31.53 1.85
730 762 8.700722 TCCGTAAACAAATATAAGAGCGTTTA 57.299 30.769 0.00 0.00 0.00 2.01
731 763 7.201582 CCTCCGTAAACAAATATAAGAGCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
732 764 6.257193 CCTCCGTAAACAAATATAAGAGCGTT 59.743 38.462 0.00 0.00 0.00 4.84
733 765 5.751990 CCTCCGTAAACAAATATAAGAGCGT 59.248 40.000 0.00 0.00 0.00 5.07
734 766 5.176958 CCCTCCGTAAACAAATATAAGAGCG 59.823 44.000 0.00 0.00 0.00 5.03
735 767 6.285990 TCCCTCCGTAAACAAATATAAGAGC 58.714 40.000 0.00 0.00 0.00 4.09
736 768 7.498443 ACTCCCTCCGTAAACAAATATAAGAG 58.502 38.462 0.00 0.00 0.00 2.85
737 769 7.427989 ACTCCCTCCGTAAACAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
738 770 8.395633 CAAACTCCCTCCGTAAACAAATATAAG 58.604 37.037 0.00 0.00 0.00 1.73
739 771 7.884354 ACAAACTCCCTCCGTAAACAAATATAA 59.116 33.333 0.00 0.00 0.00 0.98
740 772 7.396418 ACAAACTCCCTCCGTAAACAAATATA 58.604 34.615 0.00 0.00 0.00 0.86
741 773 6.243148 ACAAACTCCCTCCGTAAACAAATAT 58.757 36.000 0.00 0.00 0.00 1.28
742 774 5.623169 ACAAACTCCCTCCGTAAACAAATA 58.377 37.500 0.00 0.00 0.00 1.40
743 775 4.466827 ACAAACTCCCTCCGTAAACAAAT 58.533 39.130 0.00 0.00 0.00 2.32
744 776 3.888583 ACAAACTCCCTCCGTAAACAAA 58.111 40.909 0.00 0.00 0.00 2.83
745 777 3.564053 ACAAACTCCCTCCGTAAACAA 57.436 42.857 0.00 0.00 0.00 2.83
746 778 3.564053 AACAAACTCCCTCCGTAAACA 57.436 42.857 0.00 0.00 0.00 2.83
747 779 4.906065 AAAACAAACTCCCTCCGTAAAC 57.094 40.909 0.00 0.00 0.00 2.01
748 780 4.098196 CCAAAAACAAACTCCCTCCGTAAA 59.902 41.667 0.00 0.00 0.00 2.01
749 781 3.633065 CCAAAAACAAACTCCCTCCGTAA 59.367 43.478 0.00 0.00 0.00 3.18
750 782 3.117963 TCCAAAAACAAACTCCCTCCGTA 60.118 43.478 0.00 0.00 0.00 4.02
751 783 2.028876 CCAAAAACAAACTCCCTCCGT 58.971 47.619 0.00 0.00 0.00 4.69
752 784 2.303175 TCCAAAAACAAACTCCCTCCG 58.697 47.619 0.00 0.00 0.00 4.63
753 785 5.321927 TCTATCCAAAAACAAACTCCCTCC 58.678 41.667 0.00 0.00 0.00 4.30
754 786 6.659242 TCATCTATCCAAAAACAAACTCCCTC 59.341 38.462 0.00 0.00 0.00 4.30
755 787 6.552008 TCATCTATCCAAAAACAAACTCCCT 58.448 36.000 0.00 0.00 0.00 4.20
756 788 6.834168 TCATCTATCCAAAAACAAACTCCC 57.166 37.500 0.00 0.00 0.00 4.30
757 789 7.970614 GTGATCATCTATCCAAAAACAAACTCC 59.029 37.037 0.00 0.00 33.22 3.85
758 790 7.693951 CGTGATCATCTATCCAAAAACAAACTC 59.306 37.037 0.00 0.00 33.22 3.01
759 791 7.390440 TCGTGATCATCTATCCAAAAACAAACT 59.610 33.333 0.00 0.00 33.22 2.66
760 792 7.526608 TCGTGATCATCTATCCAAAAACAAAC 58.473 34.615 0.00 0.00 33.22 2.93
761 793 7.680442 TCGTGATCATCTATCCAAAAACAAA 57.320 32.000 0.00 0.00 33.22 2.83
762 794 7.864108 ATCGTGATCATCTATCCAAAAACAA 57.136 32.000 0.00 0.00 33.22 2.83
770 802 6.492007 AATTGCAATCGTGATCATCTATCC 57.508 37.500 13.38 0.00 33.22 2.59
782 814 5.830912 TCAGAGAAAACAAATTGCAATCGT 58.169 33.333 13.38 10.41 0.00 3.73
796 828 6.372659 GTGCCTGAGACATAATTCAGAGAAAA 59.627 38.462 3.22 0.00 42.67 2.29
804 836 3.209410 CCCAGTGCCTGAGACATAATTC 58.791 50.000 4.00 0.00 32.44 2.17
850 883 3.402681 GCTACCAGCTGGGCCTCA 61.403 66.667 35.42 14.33 42.05 3.86
1056 1096 1.966451 CAAGAACCCCACCGCTGAC 60.966 63.158 0.00 0.00 0.00 3.51
1110 1150 2.579201 CTCACCTGTCGGGCGATT 59.421 61.111 0.00 0.00 39.10 3.34
1267 1363 6.268566 CAGACAAGATCACGATACATCAGAA 58.731 40.000 0.00 0.00 0.00 3.02
1326 1422 8.447833 TGATACAACGAAGCGAAAGATTTTAAT 58.552 29.630 0.00 0.00 41.48 1.40
1332 1428 4.744570 TCTGATACAACGAAGCGAAAGAT 58.255 39.130 0.00 0.00 0.00 2.40
1358 1454 7.008628 CGTTCAGTGATTTCAATTAGGAAATGC 59.991 37.037 8.13 2.91 45.05 3.56
1419 1515 2.552315 CCGCGGGCTATAACAAATCATT 59.448 45.455 20.10 0.00 0.00 2.57
1460 1556 9.613428 CCATCCTTTCTATAACAATCACAGTAA 57.387 33.333 0.00 0.00 0.00 2.24
1476 1572 5.046520 GGAGTTACACTACACCATCCTTTCT 60.047 44.000 0.00 0.00 0.00 2.52
1615 1711 8.562892 CATCAGTACATAAAAATTCCTAGCTGG 58.437 37.037 0.00 0.00 37.10 4.85
1693 1808 6.147492 AGTGAACAAACACACTAAAACGTGTA 59.853 34.615 0.00 0.00 45.74 2.90
1770 1885 4.254492 GACAAATACTCCCTCTGTTCACC 58.746 47.826 0.00 0.00 0.00 4.02
1777 1892 5.934402 AATACGTGACAAATACTCCCTCT 57.066 39.130 0.00 0.00 0.00 3.69
1863 1978 1.201647 CTTTCAAGGACGGAGCGAGTA 59.798 52.381 0.00 0.00 0.00 2.59
1864 1979 0.038159 CTTTCAAGGACGGAGCGAGT 60.038 55.000 0.00 0.00 0.00 4.18
1865 1980 0.243907 TCTTTCAAGGACGGAGCGAG 59.756 55.000 0.00 0.00 0.00 5.03
1866 1981 0.243907 CTCTTTCAAGGACGGAGCGA 59.756 55.000 0.00 0.00 0.00 4.93
1867 1982 0.038159 ACTCTTTCAAGGACGGAGCG 60.038 55.000 0.00 0.00 0.00 5.03
1868 1983 1.270358 ACACTCTTTCAAGGACGGAGC 60.270 52.381 0.00 0.00 0.00 4.70
1869 1984 2.821991 ACACTCTTTCAAGGACGGAG 57.178 50.000 0.00 0.00 0.00 4.63
1870 1985 3.228453 AGTACACTCTTTCAAGGACGGA 58.772 45.455 0.00 0.00 0.00 4.69
1871 1986 3.662247 AGTACACTCTTTCAAGGACGG 57.338 47.619 0.00 0.00 0.00 4.79
1872 1987 3.988517 GGAAGTACACTCTTTCAAGGACG 59.011 47.826 0.00 0.00 0.00 4.79
1873 1988 4.957296 TGGAAGTACACTCTTTCAAGGAC 58.043 43.478 0.00 0.00 30.93 3.85
1874 1989 5.130477 AGTTGGAAGTACACTCTTTCAAGGA 59.870 40.000 0.00 0.00 41.68 3.36
1875 1990 5.368989 AGTTGGAAGTACACTCTTTCAAGG 58.631 41.667 0.00 0.00 41.68 3.61
1876 1991 6.927294 AAGTTGGAAGTACACTCTTTCAAG 57.073 37.500 0.00 0.00 41.68 3.02
1877 1992 6.657541 ACAAAGTTGGAAGTACACTCTTTCAA 59.342 34.615 0.00 0.00 39.65 2.69
1878 1993 6.177610 ACAAAGTTGGAAGTACACTCTTTCA 58.822 36.000 0.00 0.00 31.87 2.69
1879 1994 6.679327 ACAAAGTTGGAAGTACACTCTTTC 57.321 37.500 0.00 0.00 0.00 2.62
1880 1995 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
1881 1996 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
1882 1997 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
1883 1998 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
1884 1999 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
1885 2000 4.036380 CCTCCAACAAAGTTGGAAGTACAC 59.964 45.833 26.25 0.00 46.85 2.90
1886 2001 4.204012 CCTCCAACAAAGTTGGAAGTACA 58.796 43.478 26.25 8.75 46.85 2.90
1887 2002 3.568430 CCCTCCAACAAAGTTGGAAGTAC 59.432 47.826 26.25 0.00 46.85 2.73
1888 2003 3.203487 ACCCTCCAACAAAGTTGGAAGTA 59.797 43.478 26.25 9.67 46.85 2.24
1889 2004 2.024369 ACCCTCCAACAAAGTTGGAAGT 60.024 45.455 26.25 22.95 46.85 3.01
1890 2005 2.623416 GACCCTCCAACAAAGTTGGAAG 59.377 50.000 26.25 21.51 46.85 3.46
1891 2006 2.024846 TGACCCTCCAACAAAGTTGGAA 60.025 45.455 26.25 12.88 46.85 3.53
1892 2007 1.566703 TGACCCTCCAACAAAGTTGGA 59.433 47.619 25.17 25.17 45.61 3.53
1893 2008 2.065899 TGACCCTCCAACAAAGTTGG 57.934 50.000 20.09 20.09 40.87 3.77
1894 2009 3.447229 AGTTTGACCCTCCAACAAAGTTG 59.553 43.478 3.00 3.00 34.79 3.16
1895 2010 3.708451 AGTTTGACCCTCCAACAAAGTT 58.292 40.909 0.00 0.00 34.79 2.66
1896 2011 3.382083 AGTTTGACCCTCCAACAAAGT 57.618 42.857 0.00 0.00 34.86 2.66
1897 2012 5.316987 AGATAGTTTGACCCTCCAACAAAG 58.683 41.667 0.00 0.00 34.86 2.77
1898 2013 5.163141 TGAGATAGTTTGACCCTCCAACAAA 60.163 40.000 0.00 0.00 0.00 2.83
1899 2014 4.349636 TGAGATAGTTTGACCCTCCAACAA 59.650 41.667 0.00 0.00 0.00 2.83
1900 2015 3.907474 TGAGATAGTTTGACCCTCCAACA 59.093 43.478 0.00 0.00 0.00 3.33
1901 2016 4.553330 TGAGATAGTTTGACCCTCCAAC 57.447 45.455 0.00 0.00 0.00 3.77
1902 2017 5.073144 ACTTTGAGATAGTTTGACCCTCCAA 59.927 40.000 0.00 0.00 0.00 3.53
1903 2018 4.597507 ACTTTGAGATAGTTTGACCCTCCA 59.402 41.667 0.00 0.00 0.00 3.86
1904 2019 5.167303 ACTTTGAGATAGTTTGACCCTCC 57.833 43.478 0.00 0.00 0.00 4.30
1912 2027 6.289064 ACTCGACCAAACTTTGAGATAGTTT 58.711 36.000 2.87 0.00 44.38 2.66
1913 2028 5.855045 ACTCGACCAAACTTTGAGATAGTT 58.145 37.500 2.87 0.00 37.43 2.24
1914 2029 5.470047 ACTCGACCAAACTTTGAGATAGT 57.530 39.130 2.87 0.00 0.00 2.12
1915 2030 6.202954 ACAAACTCGACCAAACTTTGAGATAG 59.797 38.462 2.87 0.00 0.00 2.08
1916 2031 6.018262 CACAAACTCGACCAAACTTTGAGATA 60.018 38.462 2.87 0.00 0.00 1.98
1917 2032 4.881850 ACAAACTCGACCAAACTTTGAGAT 59.118 37.500 2.87 0.00 0.00 2.75
1918 2033 4.094294 CACAAACTCGACCAAACTTTGAGA 59.906 41.667 2.87 0.00 0.00 3.27
1919 2034 4.342772 CACAAACTCGACCAAACTTTGAG 58.657 43.478 2.87 0.00 0.00 3.02
1920 2035 3.426963 GCACAAACTCGACCAAACTTTGA 60.427 43.478 2.87 0.00 0.00 2.69
1921 2036 2.851824 GCACAAACTCGACCAAACTTTG 59.148 45.455 0.00 0.00 0.00 2.77
1922 2037 2.490115 TGCACAAACTCGACCAAACTTT 59.510 40.909 0.00 0.00 0.00 2.66
1923 2038 2.088423 TGCACAAACTCGACCAAACTT 58.912 42.857 0.00 0.00 0.00 2.66
1924 2039 1.745232 TGCACAAACTCGACCAAACT 58.255 45.000 0.00 0.00 0.00 2.66
1925 2040 2.553079 TTGCACAAACTCGACCAAAC 57.447 45.000 0.00 0.00 0.00 2.93
1926 2041 3.577649 TTTTGCACAAACTCGACCAAA 57.422 38.095 0.00 0.00 0.00 3.28
1927 2042 3.577649 TTTTTGCACAAACTCGACCAA 57.422 38.095 0.00 0.00 0.00 3.67
1928 2043 3.791973 ATTTTTGCACAAACTCGACCA 57.208 38.095 0.00 0.00 0.00 4.02
1929 2044 7.247728 TGATATATTTTTGCACAAACTCGACC 58.752 34.615 0.00 0.00 0.00 4.79
1930 2045 8.667987 TTGATATATTTTTGCACAAACTCGAC 57.332 30.769 0.00 0.00 0.00 4.20
1931 2046 9.288124 CATTGATATATTTTTGCACAAACTCGA 57.712 29.630 0.00 0.00 0.00 4.04
1932 2047 8.051909 GCATTGATATATTTTTGCACAAACTCG 58.948 33.333 0.00 0.00 0.00 4.18
1933 2048 9.090692 AGCATTGATATATTTTTGCACAAACTC 57.909 29.630 0.00 0.00 32.66 3.01
1934 2049 9.439500 AAGCATTGATATATTTTTGCACAAACT 57.561 25.926 0.00 0.00 32.66 2.66
1994 2109 9.611284 GCACTTTCGCATTATATTCATGATAAA 57.389 29.630 0.00 0.00 0.00 1.40
1995 2110 8.236586 GGCACTTTCGCATTATATTCATGATAA 58.763 33.333 0.00 0.00 0.00 1.75
1996 2111 7.607607 AGGCACTTTCGCATTATATTCATGATA 59.392 33.333 0.00 0.00 27.25 2.15
1997 2112 6.432162 AGGCACTTTCGCATTATATTCATGAT 59.568 34.615 0.00 0.00 27.25 2.45
1998 2113 5.764686 AGGCACTTTCGCATTATATTCATGA 59.235 36.000 0.00 0.00 27.25 3.07
1999 2114 6.005583 AGGCACTTTCGCATTATATTCATG 57.994 37.500 0.00 0.00 27.25 3.07
2034 2149 2.872245 CGATTTCAATGGGCATAGTCGT 59.128 45.455 0.00 0.00 0.00 4.34
2041 2156 1.037030 GGGAGCGATTTCAATGGGCA 61.037 55.000 0.00 0.00 0.00 5.36
2192 2492 1.100510 AGATAGCGCGTGGAGTACAA 58.899 50.000 8.43 0.00 0.00 2.41
2219 2519 2.517402 GTTGGTGGGCGTTGGTCA 60.517 61.111 0.00 0.00 0.00 4.02
2261 2563 1.486310 CAACGATGGGAGGATGAGGAA 59.514 52.381 0.00 0.00 0.00 3.36
2362 2665 2.616842 CCACGTGGCAAGTAGAAGTTTT 59.383 45.455 24.02 0.00 0.00 2.43
2443 2747 2.665000 CATGGAGGCACAGGACGT 59.335 61.111 0.00 0.00 0.00 4.34
2479 2785 4.388499 GGTGTCGGCGGTCATGGT 62.388 66.667 7.21 0.00 0.00 3.55
2571 2877 5.597182 AGACAACGATGGCTACCTAGATTTA 59.403 40.000 0.00 0.00 45.56 1.40
2767 3079 1.586422 GAGCACGGCATACATGACAT 58.414 50.000 0.00 0.00 34.77 3.06
2835 3147 9.549078 GAGAAGAGGATTTTAGTTGGGTAATAG 57.451 37.037 0.00 0.00 0.00 1.73
2897 3212 3.731653 GAGCAGGCTTCCTCTCGGC 62.732 68.421 0.00 0.00 0.00 5.54
2902 3217 3.387699 AGATCTAAAGAGCAGGCTTCCTC 59.612 47.826 0.00 4.21 31.88 3.71
2903 3218 3.134442 CAGATCTAAAGAGCAGGCTTCCT 59.866 47.826 0.00 0.00 31.88 3.36
3024 3339 9.516314 TTCTGGATCATTTATTATATCTACGCG 57.484 33.333 3.53 3.53 0.00 6.01
3044 3361 5.011635 TGAAACAGTAGCTACATGTTCTGGA 59.988 40.000 27.17 16.07 36.18 3.86
3046 3363 6.237675 CGATGAAACAGTAGCTACATGTTCTG 60.238 42.308 27.17 18.74 36.18 3.02
3068 3385 4.508128 CCACCGGCTGCGTACGAT 62.508 66.667 21.65 0.00 0.00 3.73
3087 3404 5.825507 GAAATCATTCCAGGCTGTGAATAC 58.174 41.667 22.41 12.63 30.31 1.89
3111 3428 1.026718 GGATCCGAGCCACTTTGGTG 61.027 60.000 0.00 0.00 40.46 4.17
3112 3429 1.299976 GGATCCGAGCCACTTTGGT 59.700 57.895 0.00 0.00 40.46 3.67
3114 3431 0.322456 TTGGGATCCGAGCCACTTTG 60.322 55.000 5.45 0.00 0.00 2.77
3118 3435 2.567615 ACTATATTGGGATCCGAGCCAC 59.432 50.000 5.45 0.00 0.00 5.01
3122 3439 3.961408 CCCCTACTATATTGGGATCCGAG 59.039 52.174 5.45 0.00 45.82 4.63
3139 3456 0.917333 AAATCTCGGCCAACCCCCTA 60.917 55.000 2.24 0.00 0.00 3.53
3174 3491 0.105039 GGTGGATTAGGAGCACTCGG 59.895 60.000 0.00 0.00 0.00 4.63
3181 3498 6.852420 TTATATTCGGAGGTGGATTAGGAG 57.148 41.667 0.00 0.00 0.00 3.69
3203 3520 9.701098 CATTTATGCCATCAAATTAGTAGCATT 57.299 29.630 0.00 0.00 39.89 3.56
3204 3521 8.863086 ACATTTATGCCATCAAATTAGTAGCAT 58.137 29.630 0.00 0.00 41.89 3.79
3205 3522 8.236585 ACATTTATGCCATCAAATTAGTAGCA 57.763 30.769 0.00 0.00 0.00 3.49
3206 3523 8.971321 CAACATTTATGCCATCAAATTAGTAGC 58.029 33.333 0.00 0.00 0.00 3.58
3207 3524 9.467258 CCAACATTTATGCCATCAAATTAGTAG 57.533 33.333 0.00 0.00 0.00 2.57
3208 3525 8.976353 ACCAACATTTATGCCATCAAATTAGTA 58.024 29.630 0.00 0.00 0.00 1.82
3209 3526 7.850193 ACCAACATTTATGCCATCAAATTAGT 58.150 30.769 0.00 0.00 0.00 2.24
3210 3527 9.248291 GTACCAACATTTATGCCATCAAATTAG 57.752 33.333 0.00 0.00 0.00 1.73
3211 3528 8.753133 TGTACCAACATTTATGCCATCAAATTA 58.247 29.630 0.00 0.00 0.00 1.40
3212 3529 7.619050 TGTACCAACATTTATGCCATCAAATT 58.381 30.769 0.00 0.00 0.00 1.82
3213 3530 7.180322 TGTACCAACATTTATGCCATCAAAT 57.820 32.000 0.00 0.00 0.00 2.32
3214 3531 6.596309 TGTACCAACATTTATGCCATCAAA 57.404 33.333 0.00 0.00 0.00 2.69
3215 3532 6.788598 ATGTACCAACATTTATGCCATCAA 57.211 33.333 0.00 0.00 44.07 2.57
3228 3545 8.346300 CCGCATTTATACAATAATGTACCAACA 58.654 33.333 0.00 0.00 44.47 3.33
3229 3546 8.347035 ACCGCATTTATACAATAATGTACCAAC 58.653 33.333 0.00 0.00 44.47 3.77
3230 3547 8.453238 ACCGCATTTATACAATAATGTACCAA 57.547 30.769 0.00 0.00 44.47 3.67
3231 3548 7.715686 TGACCGCATTTATACAATAATGTACCA 59.284 33.333 0.00 0.00 44.47 3.25
3232 3549 8.090250 TGACCGCATTTATACAATAATGTACC 57.910 34.615 0.00 0.00 44.47 3.34
3233 3550 9.938670 TTTGACCGCATTTATACAATAATGTAC 57.061 29.630 0.00 0.00 44.47 2.90
3234 3551 9.938670 GTTTGACCGCATTTATACAATAATGTA 57.061 29.630 0.00 0.00 45.67 2.29
3235 3552 8.462811 TGTTTGACCGCATTTATACAATAATGT 58.537 29.630 0.00 0.00 43.74 2.71
3236 3553 8.848948 TGTTTGACCGCATTTATACAATAATG 57.151 30.769 0.00 0.00 35.39 1.90
3240 3557 9.862371 TTTTATGTTTGACCGCATTTATACAAT 57.138 25.926 0.00 0.00 0.00 2.71
3241 3558 9.692749 TTTTTATGTTTGACCGCATTTATACAA 57.307 25.926 0.00 0.00 0.00 2.41
3267 3584 5.931724 CCAACTTTGTTGGAAAGTCAAACTT 59.068 36.000 21.06 0.00 42.06 2.66
3268 3585 5.245075 TCCAACTTTGTTGGAAAGTCAAACT 59.755 36.000 24.52 0.00 44.90 2.66
3269 3586 5.474825 TCCAACTTTGTTGGAAAGTCAAAC 58.525 37.500 24.52 0.00 44.90 2.93
3270 3587 5.730296 TCCAACTTTGTTGGAAAGTCAAA 57.270 34.783 24.52 4.81 44.90 2.69
3278 3595 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
3279 3596 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
3280 3597 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
3281 3598 7.462571 AAAAGAGTGTACTTCCAACTTTGTT 57.537 32.000 0.00 0.00 0.00 2.83
3282 3599 8.570068 TTAAAAGAGTGTACTTCCAACTTTGT 57.430 30.769 0.00 0.00 0.00 2.83
3283 3600 8.129211 CCTTAAAAGAGTGTACTTCCAACTTTG 58.871 37.037 0.00 0.00 0.00 2.77
3284 3601 8.050930 TCCTTAAAAGAGTGTACTTCCAACTTT 58.949 33.333 0.00 0.00 0.00 2.66
3285 3602 7.571025 TCCTTAAAAGAGTGTACTTCCAACTT 58.429 34.615 0.00 0.00 0.00 2.66
3286 3603 7.133133 TCCTTAAAAGAGTGTACTTCCAACT 57.867 36.000 0.00 0.00 0.00 3.16
3287 3604 7.041303 CCTTCCTTAAAAGAGTGTACTTCCAAC 60.041 40.741 0.00 0.00 0.00 3.77
3288 3605 6.996282 CCTTCCTTAAAAGAGTGTACTTCCAA 59.004 38.462 0.00 0.00 0.00 3.53
3289 3606 6.328148 TCCTTCCTTAAAAGAGTGTACTTCCA 59.672 38.462 0.00 0.00 0.00 3.53
3290 3607 6.766429 TCCTTCCTTAAAAGAGTGTACTTCC 58.234 40.000 0.00 0.00 0.00 3.46
3291 3608 6.874664 CCTCCTTCCTTAAAAGAGTGTACTTC 59.125 42.308 0.00 0.00 0.00 3.01
3292 3609 6.239915 CCCTCCTTCCTTAAAAGAGTGTACTT 60.240 42.308 0.00 0.00 0.00 2.24
3293 3610 5.248705 CCCTCCTTCCTTAAAAGAGTGTACT 59.751 44.000 0.00 0.00 0.00 2.73
3294 3611 5.247792 TCCCTCCTTCCTTAAAAGAGTGTAC 59.752 44.000 0.00 0.00 0.00 2.90
3295 3612 5.408824 TCCCTCCTTCCTTAAAAGAGTGTA 58.591 41.667 0.00 0.00 0.00 2.90
3296 3613 4.240323 TCCCTCCTTCCTTAAAAGAGTGT 58.760 43.478 0.00 0.00 0.00 3.55
3297 3614 4.287326 ACTCCCTCCTTCCTTAAAAGAGTG 59.713 45.833 0.00 0.00 0.00 3.51
3298 3615 4.504382 ACTCCCTCCTTCCTTAAAAGAGT 58.496 43.478 0.00 0.00 0.00 3.24
3299 3616 5.958987 TCTACTCCCTCCTTCCTTAAAAGAG 59.041 44.000 0.00 0.00 0.00 2.85
3300 3617 5.720520 GTCTACTCCCTCCTTCCTTAAAAGA 59.279 44.000 0.00 0.00 0.00 2.52
3301 3618 5.722441 AGTCTACTCCCTCCTTCCTTAAAAG 59.278 44.000 0.00 0.00 0.00 2.27
3302 3619 5.662597 AGTCTACTCCCTCCTTCCTTAAAA 58.337 41.667 0.00 0.00 0.00 1.52
3303 3620 5.286760 AGTCTACTCCCTCCTTCCTTAAA 57.713 43.478 0.00 0.00 0.00 1.52
3304 3621 4.969136 AGTCTACTCCCTCCTTCCTTAA 57.031 45.455 0.00 0.00 0.00 1.85
3305 3622 4.141205 GCTAGTCTACTCCCTCCTTCCTTA 60.141 50.000 0.00 0.00 0.00 2.69
3306 3623 3.373329 GCTAGTCTACTCCCTCCTTCCTT 60.373 52.174 0.00 0.00 0.00 3.36
3307 3624 2.176148 GCTAGTCTACTCCCTCCTTCCT 59.824 54.545 0.00 0.00 0.00 3.36
3308 3625 2.091775 TGCTAGTCTACTCCCTCCTTCC 60.092 54.545 0.00 0.00 0.00 3.46
3309 3626 3.300239 TGCTAGTCTACTCCCTCCTTC 57.700 52.381 0.00 0.00 0.00 3.46
3310 3627 3.749310 CGATGCTAGTCTACTCCCTCCTT 60.749 52.174 0.00 0.00 0.00 3.36
3311 3628 2.224670 CGATGCTAGTCTACTCCCTCCT 60.225 54.545 0.00 0.00 0.00 3.69
3312 3629 2.156098 CGATGCTAGTCTACTCCCTCC 58.844 57.143 0.00 0.00 0.00 4.30
3313 3630 3.071479 CTCGATGCTAGTCTACTCCCTC 58.929 54.545 0.00 0.00 0.00 4.30
3314 3631 2.706723 TCTCGATGCTAGTCTACTCCCT 59.293 50.000 0.00 0.00 0.00 4.20
3315 3632 3.128852 TCTCGATGCTAGTCTACTCCC 57.871 52.381 0.00 0.00 0.00 4.30
3316 3633 6.804770 TTATTCTCGATGCTAGTCTACTCC 57.195 41.667 0.00 0.00 0.00 3.85
3496 3893 1.760029 TGCCCAAAAACCTTTCCTCAC 59.240 47.619 0.00 0.00 0.00 3.51
3498 3895 1.070134 GGTGCCCAAAAACCTTTCCTC 59.930 52.381 0.00 0.00 33.40 3.71
3499 3896 1.128200 GGTGCCCAAAAACCTTTCCT 58.872 50.000 0.00 0.00 33.40 3.36
3500 3897 0.833949 TGGTGCCCAAAAACCTTTCC 59.166 50.000 0.00 0.00 37.36 3.13
3502 3899 4.779993 TTTATGGTGCCCAAAAACCTTT 57.220 36.364 0.00 0.00 36.95 3.11
3561 3969 4.331968 TCCACGTGGCTCTCAAATTTTAT 58.668 39.130 30.25 0.00 34.44 1.40
3579 3987 1.393539 CGTCGGATTGTCATGTTCCAC 59.606 52.381 0.00 0.00 0.00 4.02
3610 4018 3.233980 CATCGGATCCGCCTCCCA 61.234 66.667 29.62 11.59 39.59 4.37
3611 4019 4.008933 CCATCGGATCCGCCTCCC 62.009 72.222 29.62 0.00 39.59 4.30
3751 4201 0.184933 CCCTATCCCGCCCAATTTCA 59.815 55.000 0.00 0.00 0.00 2.69
3764 4214 2.279517 CGCCACTGTCGCCCTATC 60.280 66.667 0.00 0.00 0.00 2.08
3816 4266 4.864334 CTCGATGCCAGCCACCCC 62.864 72.222 0.00 0.00 0.00 4.95
3817 4267 3.112205 ATCTCGATGCCAGCCACCC 62.112 63.158 0.00 0.00 0.00 4.61
3820 4270 2.507452 CCATCTCGATGCCAGCCA 59.493 61.111 1.37 0.00 37.49 4.75
3830 4280 2.202797 CACCTCACCGCCATCTCG 60.203 66.667 0.00 0.00 0.00 4.04
3846 4296 3.974835 ATTCACCGATGCTGCGCCA 62.975 57.895 4.18 0.00 0.00 5.69
3852 4302 0.391661 AGCGAACATTCACCGATGCT 60.392 50.000 0.00 0.00 0.00 3.79
3856 4306 1.011968 CCGAAGCGAACATTCACCGA 61.012 55.000 0.00 0.00 0.00 4.69
3857 4307 1.419922 CCGAAGCGAACATTCACCG 59.580 57.895 0.00 0.00 0.00 4.94
3877 4327 1.734465 GATGTGGAGAGAAGCAAACCG 59.266 52.381 0.00 0.00 0.00 4.44
3882 4332 2.839486 AAACGATGTGGAGAGAAGCA 57.161 45.000 0.00 0.00 0.00 3.91
3971 4426 5.963865 TGTCCTATAGCTATATGATGCCCAA 59.036 40.000 18.20 2.86 0.00 4.12
3972 4427 5.528337 TGTCCTATAGCTATATGATGCCCA 58.472 41.667 18.20 10.79 0.00 5.36
3986 4441 2.028930 GCCTCCAACGGATGTCCTATAG 60.029 54.545 0.00 0.00 0.00 1.31
3987 4442 1.968493 GCCTCCAACGGATGTCCTATA 59.032 52.381 0.00 0.00 0.00 1.31
3988 4443 0.759346 GCCTCCAACGGATGTCCTAT 59.241 55.000 0.00 0.00 0.00 2.57
3993 4448 0.536460 AAAACGCCTCCAACGGATGT 60.536 50.000 0.00 0.00 34.00 3.06
4029 4485 0.885196 GCCCATAAAACTGCCGTTCA 59.115 50.000 0.00 0.00 31.66 3.18
4030 4486 0.885196 TGCCCATAAAACTGCCGTTC 59.115 50.000 0.00 0.00 31.66 3.95
4050 4506 5.300752 ACAGATGCCCTGAAATAGTAATCG 58.699 41.667 9.80 0.00 45.78 3.34
4052 4508 6.426587 ACAACAGATGCCCTGAAATAGTAAT 58.573 36.000 9.80 0.00 45.78 1.89
4091 4547 5.878406 TTGGATGAGAGAGAATAGAACCC 57.122 43.478 0.00 0.00 0.00 4.11
4188 4644 6.695278 ACCAAGTCACAATCGTTTGTATTTTG 59.305 34.615 11.34 13.73 44.24 2.44
4199 4655 4.272504 ACAGTTTACACCAAGTCACAATCG 59.727 41.667 0.00 0.00 0.00 3.34
4203 4659 6.824196 TGATAAACAGTTTACACCAAGTCACA 59.176 34.615 7.95 0.00 0.00 3.58
4210 4666 5.050126 TGGGTGATAAACAGTTTACACCA 57.950 39.130 32.23 23.73 42.51 4.17
4221 4677 4.201910 CCACACGATGAATGGGTGATAAAC 60.202 45.833 0.00 0.00 35.68 2.01
4288 4744 5.975988 ACAGGATATCCAGTACCACAATT 57.024 39.130 23.81 0.00 38.89 2.32
4300 4756 8.598041 AGTTCAATGGTCTAATACAGGATATCC 58.402 37.037 14.41 14.41 0.00 2.59
4307 4763 6.201806 GCAGCTAGTTCAATGGTCTAATACAG 59.798 42.308 0.00 0.00 0.00 2.74
4337 4793 3.026630 TGTGAAGAAAGCCTCACTACG 57.973 47.619 4.07 0.00 34.51 3.51
4341 4797 3.627577 TGAAGTTGTGAAGAAAGCCTCAC 59.372 43.478 0.00 0.00 0.00 3.51
4388 4844 6.745450 CCATACAATAAGTTGGCAAACTAACG 59.255 38.462 6.98 0.00 46.15 3.18
4427 4884 6.059406 CTTTGAGAAGAGCCCTTTGTTGGG 62.059 50.000 0.00 0.00 41.55 4.12
4454 4911 2.579860 ACAGGAGCCTCTTTCCATTGAT 59.420 45.455 0.00 0.00 37.18 2.57
4493 4950 3.438781 GCGAACAATACATCCAGGTTCAA 59.561 43.478 0.00 0.00 38.14 2.69
4494 4951 3.006940 GCGAACAATACATCCAGGTTCA 58.993 45.455 0.00 0.00 38.14 3.18
4505 4962 4.927425 TGGAGAAGTAAGTGCGAACAATAC 59.073 41.667 0.00 0.00 0.00 1.89
4524 4981 3.599343 TGAATGTCAATCTCGGTTGGAG 58.401 45.455 0.00 0.00 44.58 3.86
4580 5037 9.791820 GAACTACCTTATAAGAGAAGTCAGTTC 57.208 37.037 14.28 15.19 36.60 3.01
4586 5043 9.702253 TGATCAGAACTACCTTATAAGAGAAGT 57.298 33.333 14.28 10.48 0.00 3.01
4597 5054 6.715280 ACATCACAATGATCAGAACTACCTT 58.285 36.000 0.09 0.00 34.28 3.50
4598 5055 6.305272 ACATCACAATGATCAGAACTACCT 57.695 37.500 0.09 0.00 34.28 3.08
4606 5063 5.562506 AGCAGAAACATCACAATGATCAG 57.437 39.130 0.09 0.00 34.28 2.90
4612 5069 6.089820 CGCAAATAAAGCAGAAACATCACAAT 59.910 34.615 0.00 0.00 0.00 2.71
4642 5099 6.822667 TTCATCACATAGTTGCAACATCTT 57.177 33.333 30.11 12.97 0.00 2.40
4710 5167 4.276678 CAGGGTTGTACCATCATAATGCTG 59.723 45.833 0.00 0.00 41.02 4.41
4722 5179 0.394352 CTCATGGGCAGGGTTGTACC 60.394 60.000 0.00 0.00 37.60 3.34
4723 5180 0.618458 TCTCATGGGCAGGGTTGTAC 59.382 55.000 0.00 0.00 0.00 2.90
4724 5181 0.618458 GTCTCATGGGCAGGGTTGTA 59.382 55.000 0.00 0.00 0.00 2.41
4725 5182 1.380302 GTCTCATGGGCAGGGTTGT 59.620 57.895 0.00 0.00 0.00 3.32
4726 5183 0.679002 CTGTCTCATGGGCAGGGTTG 60.679 60.000 8.62 0.00 0.00 3.77
4727 5184 1.687612 CTGTCTCATGGGCAGGGTT 59.312 57.895 8.62 0.00 0.00 4.11
4783 5240 1.060729 TGCCAAGGTAGCAAGGTGTA 58.939 50.000 0.00 0.00 37.28 2.90
4812 5269 9.065871 GTAAGCACATCAAAACTTAGCAAATAG 57.934 33.333 0.00 0.00 0.00 1.73
5120 5581 7.166804 CCGACTCATTAACGACAAAATTGTTTT 59.833 33.333 0.00 0.66 42.43 2.43
5145 5606 4.051922 CGAACATAACAGTGAGATAGGCC 58.948 47.826 0.00 0.00 0.00 5.19
5194 7491 8.822855 CCGTGTGTATAAACTTGCTATATCAAA 58.177 33.333 0.00 0.00 0.00 2.69
5220 7517 4.112634 TGCTCAACGCACAGAGTAATATC 58.887 43.478 0.00 0.00 45.47 1.63
5221 7518 4.123497 TGCTCAACGCACAGAGTAATAT 57.877 40.909 0.00 0.00 45.47 1.28
5224 7521 3.978460 TGCTCAACGCACAGAGTAA 57.022 47.368 0.00 0.00 45.47 2.24
5234 7531 2.404265 TGCTGACAAAATGCTCAACG 57.596 45.000 0.00 0.00 0.00 4.10
5247 7544 4.240096 CAAAAATCCACAGGAATGCTGAC 58.760 43.478 9.20 0.00 34.34 3.51
5332 7631 5.650266 AGTTCATATATCACACCCGCAAAAA 59.350 36.000 0.00 0.00 0.00 1.94
5333 7632 5.189928 AGTTCATATATCACACCCGCAAAA 58.810 37.500 0.00 0.00 0.00 2.44
5334 7633 4.776349 AGTTCATATATCACACCCGCAAA 58.224 39.130 0.00 0.00 0.00 3.68
5335 7634 4.415881 AGTTCATATATCACACCCGCAA 57.584 40.909 0.00 0.00 0.00 4.85
5336 7635 4.100963 AGAAGTTCATATATCACACCCGCA 59.899 41.667 5.50 0.00 0.00 5.69
5337 7636 4.632153 AGAAGTTCATATATCACACCCGC 58.368 43.478 5.50 0.00 0.00 6.13
5338 7637 6.018751 CACAAGAAGTTCATATATCACACCCG 60.019 42.308 5.50 0.00 0.00 5.28
5339 7638 6.238484 GCACAAGAAGTTCATATATCACACCC 60.238 42.308 5.50 0.00 0.00 4.61
5340 7639 6.316140 TGCACAAGAAGTTCATATATCACACC 59.684 38.462 5.50 0.00 0.00 4.16
5341 7640 7.307493 TGCACAAGAAGTTCATATATCACAC 57.693 36.000 5.50 0.00 0.00 3.82
5342 7641 7.920160 TTGCACAAGAAGTTCATATATCACA 57.080 32.000 5.50 0.00 0.00 3.58
5343 7642 9.229784 CATTTGCACAAGAAGTTCATATATCAC 57.770 33.333 5.50 0.00 0.00 3.06
5344 7643 8.959548 ACATTTGCACAAGAAGTTCATATATCA 58.040 29.630 5.50 0.00 0.00 2.15
5345 7644 9.793252 AACATTTGCACAAGAAGTTCATATATC 57.207 29.630 5.50 0.00 0.00 1.63
5349 7648 9.979578 AATAAACATTTGCACAAGAAGTTCATA 57.020 25.926 5.50 0.00 0.00 2.15
5350 7649 8.891671 AATAAACATTTGCACAAGAAGTTCAT 57.108 26.923 5.50 0.00 0.00 2.57
5391 7690 7.752638 ACATGATTTCCTTCATATGATCCAGA 58.247 34.615 6.17 0.00 34.59 3.86
5392 7691 7.883833 AGACATGATTTCCTTCATATGATCCAG 59.116 37.037 6.17 0.91 34.59 3.86
5394 7693 8.512956 CAAGACATGATTTCCTTCATATGATCC 58.487 37.037 6.17 0.00 34.59 3.36
5442 8239 7.554118 ACTGGACATCACAACAGGATTTAATAG 59.446 37.037 0.00 0.00 35.34 1.73
5481 8278 5.067674 CCTTCACAAACCAAATTCACTCAGA 59.932 40.000 0.00 0.00 0.00 3.27
5503 8301 1.399714 CTCACCATCATGCAATGCCT 58.600 50.000 1.53 0.00 46.21 4.75
5519 8317 4.039092 GCTCTTGGCTGGCCCTCA 62.039 66.667 9.28 0.00 38.06 3.86
5525 8323 1.364626 GACGACATGCTCTTGGCTGG 61.365 60.000 0.00 0.00 42.39 4.85
5535 8333 0.097674 GTCTGCCAATGACGACATGC 59.902 55.000 0.05 2.26 36.79 4.06
5563 8361 0.967380 CAGGAAACCACTGCCATCCC 60.967 60.000 0.00 0.00 0.00 3.85
5569 8367 4.301628 CAAGAATTTCAGGAAACCACTGC 58.698 43.478 0.00 0.00 35.94 4.40
5583 8381 5.310409 TGTTCTCAGACTCCCAAGAATTT 57.690 39.130 0.00 0.00 31.01 1.82
5584 8382 4.982241 TGTTCTCAGACTCCCAAGAATT 57.018 40.909 0.00 0.00 31.01 2.17
5601 8399 0.250513 ACCAGGCCTCGAAGATGTTC 59.749 55.000 0.00 0.00 33.89 3.18
5661 8459 4.871933 AAATGGAAGGGTGTGACATTTC 57.128 40.909 0.00 0.00 37.20 2.17
5684 8490 3.008049 AGACTTCTATTCAACCACGCCTT 59.992 43.478 0.00 0.00 0.00 4.35
5688 8494 3.195825 AGGGAGACTTCTATTCAACCACG 59.804 47.826 0.00 0.00 0.00 4.94
5700 8506 6.551601 TGATATGGTAAGAAGAGGGAGACTTC 59.448 42.308 0.00 0.00 42.53 3.01
5749 8555 2.450476 AGGTGGAAGCATGAATTGGTC 58.550 47.619 0.00 0.00 34.16 4.02
5768 8574 4.124851 ACTCCTTTACATGGCGAAGTAG 57.875 45.455 0.00 0.00 0.00 2.57
5769 8575 5.664294 TTACTCCTTTACATGGCGAAGTA 57.336 39.130 0.00 0.00 0.00 2.24
5770 8576 4.546829 TTACTCCTTTACATGGCGAAGT 57.453 40.909 0.00 0.00 0.00 3.01
5773 8587 5.941058 TGAAAATTACTCCTTTACATGGCGA 59.059 36.000 0.00 0.00 0.00 5.54
5787 8601 9.661563 TCAATACGTAGATGGTTGAAAATTACT 57.338 29.630 0.08 0.00 0.00 2.24
5805 8619 9.265901 CTAATTTCTCATTCTCCATCAATACGT 57.734 33.333 0.00 0.00 0.00 3.57
5806 8620 9.265901 ACTAATTTCTCATTCTCCATCAATACG 57.734 33.333 0.00 0.00 0.00 3.06
5841 8655 9.474920 CACTCTCTTTATAAGATGGCTTAAGAG 57.525 37.037 6.67 0.00 41.45 2.85
5842 8656 8.424918 CCACTCTCTTTATAAGATGGCTTAAGA 58.575 37.037 6.67 0.00 39.85 2.10
5844 8658 8.319057 TCCACTCTCTTTATAAGATGGCTTAA 57.681 34.615 0.00 0.00 39.85 1.85
5845 8659 7.914427 TCCACTCTCTTTATAAGATGGCTTA 57.086 36.000 0.00 0.00 40.65 3.09
5846 8660 6.814954 TCCACTCTCTTTATAAGATGGCTT 57.185 37.500 0.00 0.00 36.82 4.35
5847 8661 6.814954 TTCCACTCTCTTTATAAGATGGCT 57.185 37.500 0.00 0.00 36.82 4.75
5848 8662 7.051000 AGTTTCCACTCTCTTTATAAGATGGC 58.949 38.462 0.00 0.00 36.82 4.40
5858 8672 9.442047 CTCATGTTATTAGTTTCCACTCTCTTT 57.558 33.333 0.00 0.00 34.06 2.52
5881 8695 7.563188 ACCAACAATATAATTACCAATGGCTCA 59.437 33.333 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.