Multiple sequence alignment - TraesCS3A01G211000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G211000 chr3A 100.000 5422 0 0 1 5422 377792725 377798146 0.000000e+00 10013
1 TraesCS3A01G211000 chr3A 99.582 239 1 0 959 1197 377793449 377793687 2.320000e-118 436
2 TraesCS3A01G211000 chr3A 99.582 239 1 0 725 963 377793683 377793921 2.320000e-118 436
3 TraesCS3A01G211000 chr3A 99.070 215 2 0 5208 5422 22785801 22785587 2.370000e-103 387
4 TraesCS3A01G211000 chr3D 95.053 4124 118 41 959 5054 288102541 288106606 0.000000e+00 6407
5 TraesCS3A01G211000 chr3D 95.177 311 10 2 658 963 288102472 288102782 2.270000e-133 486
6 TraesCS3A01G211000 chr3B 96.627 3558 77 11 959 4501 380886527 380890056 0.000000e+00 5866
7 TraesCS3A01G211000 chr3B 90.711 506 29 7 4565 5055 380890065 380890567 0.000000e+00 658
8 TraesCS3A01G211000 chr3B 96.091 307 9 1 658 961 380886460 380886766 1.050000e-136 497
9 TraesCS3A01G211000 chr3B 99.533 214 1 0 5209 5422 696324260 696324473 1.830000e-104 390
10 TraesCS3A01G211000 chr3B 98.624 218 3 0 5205 5422 663556419 663556636 2.370000e-103 387
11 TraesCS3A01G211000 chr3B 83.375 397 40 9 238 623 805483533 805483914 1.450000e-90 344
12 TraesCS3A01G211000 chr3B 82.369 363 45 8 271 623 177023720 177024073 1.140000e-76 298
13 TraesCS3A01G211000 chr3B 91.429 140 12 0 5054 5193 464769602 464769463 5.540000e-45 193
14 TraesCS3A01G211000 chr7A 95.563 631 28 0 1 631 112064707 112064077 0.000000e+00 1011
15 TraesCS3A01G211000 chr7A 94.164 634 31 1 1 628 251740583 251741216 0.000000e+00 961
16 TraesCS3A01G211000 chr7A 97.345 226 6 0 5197 5422 46297058 46297283 8.520000e-103 385
17 TraesCS3A01G211000 chr7A 86.364 198 26 1 431 628 689369051 689369247 1.180000e-51 215
18 TraesCS3A01G211000 chr7A 93.525 139 9 0 5055 5193 9291206 9291068 1.980000e-49 207
19 TraesCS3A01G211000 chr7A 91.892 148 12 0 5050 5197 538162593 538162446 1.980000e-49 207
20 TraesCS3A01G211000 chr5D 90.044 683 54 9 4377 5055 301383796 301383124 0.000000e+00 872
21 TraesCS3A01G211000 chr6A 99.070 215 2 0 5208 5422 133802835 133803049 2.370000e-103 387
22 TraesCS3A01G211000 chr5B 98.630 219 1 2 5204 5422 648994882 648995098 2.370000e-103 387
23 TraesCS3A01G211000 chr5B 97.768 224 3 2 5200 5422 669690966 669691188 8.520000e-103 385
24 TraesCS3A01G211000 chr2B 98.190 221 3 1 5202 5422 620221266 620221485 8.520000e-103 385
25 TraesCS3A01G211000 chr2B 98.190 221 3 1 5202 5422 620224979 620225198 8.520000e-103 385
26 TraesCS3A01G211000 chr2B 93.151 146 10 0 5050 5195 225816142 225815997 1.180000e-51 215
27 TraesCS3A01G211000 chr2B 91.837 147 12 0 5049 5195 735518003 735518149 7.120000e-49 206
28 TraesCS3A01G211000 chr4D 90.598 234 17 4 4379 4611 128206194 128206423 6.820000e-79 305
29 TraesCS3A01G211000 chr7D 90.254 236 18 4 4377 4611 309171016 309171247 2.450000e-78 303
30 TraesCS3A01G211000 chr6D 88.983 236 21 4 4377 4611 380614965 380615196 2.470000e-73 287
31 TraesCS3A01G211000 chr4A 87.383 214 26 1 410 623 465886138 465885926 1.510000e-60 244
32 TraesCS3A01G211000 chr5A 87.685 203 24 1 421 623 403944544 403944745 9.080000e-58 235
33 TraesCS3A01G211000 chr5A 90.909 110 10 0 5054 5163 29063830 29063939 1.220000e-31 148
34 TraesCS3A01G211000 chr1A 95.862 145 6 0 5051 5195 48989960 48990104 9.080000e-58 235
35 TraesCS3A01G211000 chr6B 86.735 196 24 2 429 623 72204016 72203822 3.290000e-52 217
36 TraesCS3A01G211000 chr2D 93.750 144 7 1 5052 5195 410417470 410417611 1.180000e-51 215
37 TraesCS3A01G211000 chr2D 90.000 140 14 0 5054 5193 500485706 500485845 1.200000e-41 182
38 TraesCS3A01G211000 chr2D 87.324 142 13 4 4471 4611 475733972 475734109 2.020000e-34 158
39 TraesCS3A01G211000 chr1D 85.854 205 26 3 429 631 355204545 355204342 1.180000e-51 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G211000 chr3A 377792725 377798146 5421 False 10013.000000 10013 100.000000 1 5422 1 chr3A.!!$F1 5421
1 TraesCS3A01G211000 chr3D 288102472 288106606 4134 False 3446.500000 6407 95.115000 658 5054 2 chr3D.!!$F1 4396
2 TraesCS3A01G211000 chr3B 380886460 380890567 4107 False 2340.333333 5866 94.476333 658 5055 3 chr3B.!!$F5 4397
3 TraesCS3A01G211000 chr7A 112064077 112064707 630 True 1011.000000 1011 95.563000 1 631 1 chr7A.!!$R2 630
4 TraesCS3A01G211000 chr7A 251740583 251741216 633 False 961.000000 961 94.164000 1 628 1 chr7A.!!$F2 627
5 TraesCS3A01G211000 chr5D 301383124 301383796 672 True 872.000000 872 90.044000 4377 5055 1 chr5D.!!$R1 678
6 TraesCS3A01G211000 chr2B 620221266 620225198 3932 False 385.000000 385 98.190000 5202 5422 2 chr2B.!!$F2 220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 634 0.254178 TGAGAGGGCAGGAAAGATGC 59.746 55.000 0.00 0.00 43.09 3.91 F
906 913 0.187361 ATCCTCCTCCTCCTTCCTCG 59.813 60.000 0.00 0.00 0.00 4.63 F
1236 1246 0.250209 CAAGCTCCCGGGATCATCAG 60.250 60.000 27.07 12.74 0.00 2.90 F
1315 1325 0.973496 GGTCTCACCCCTCTCACTCC 60.973 65.000 0.00 0.00 30.04 3.85 F
1831 1847 1.588239 TGGCAGAGAGATGGACCATT 58.412 50.000 8.78 0.00 0.00 3.16 F
1943 1959 1.730064 GCACATCATTTTTGCTGCAGG 59.270 47.619 17.12 0.00 33.26 4.85 F
2254 2270 1.801178 GCCTCTCCTTTGTCGAACTTG 59.199 52.381 0.00 0.00 0.00 3.16 F
2938 2954 2.079925 CTCTGTTGGACTGCCTTTAGC 58.920 52.381 0.00 0.00 44.14 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 2251 3.113260 ACAAGTTCGACAAAGGAGAGG 57.887 47.619 0.00 0.00 0.00 3.69 R
2308 2324 3.369756 TGAGCGCCTTAGTGAAATTAACG 59.630 43.478 2.29 0.00 0.00 3.18 R
2852 2868 4.956700 ACACCAAGTATCTAAGCTAGCTCA 59.043 41.667 19.65 1.27 0.00 4.26 R
2853 2869 5.523438 ACACCAAGTATCTAAGCTAGCTC 57.477 43.478 19.65 4.00 0.00 4.09 R
3569 3586 3.746492 ACTCAGGTGTAGCGAAACAATTC 59.254 43.478 0.00 0.00 0.00 2.17 R
3690 3707 4.558226 TCATGTGAGCACCAAAGACTAT 57.442 40.909 0.00 0.00 0.00 2.12 R
3982 3999 0.814457 AACGTTGCAAACCTGAAGCA 59.186 45.000 0.00 0.00 46.28 3.91 R
4702 4732 0.830444 TACCTGGACTGCTTCACGGT 60.830 55.000 0.00 0.00 42.04 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 0.596577 CTGTTCGAGGTTGAGGTCGA 59.403 55.000 0.00 0.00 43.25 4.20
167 168 4.710695 CGACACCGGTGTAGCGCA 62.711 66.667 38.93 0.00 45.05 6.09
346 347 2.744202 GAGAAATGACAACACCTCGCAT 59.256 45.455 0.00 0.00 0.00 4.73
369 370 0.404040 TGCTCTTTTTCCCGATGGGT 59.596 50.000 1.04 0.00 44.74 4.51
405 406 1.211449 CTGCGCGTGAGAGAGTCTT 59.789 57.895 8.43 0.00 0.00 3.01
559 566 5.184864 TGCAATTAAAAGACAATCGGATGGT 59.815 36.000 0.00 0.00 0.00 3.55
570 577 3.864789 ATCGGATGGTAGAAAATGCCT 57.135 42.857 0.00 0.00 34.11 4.75
575 582 5.946972 TCGGATGGTAGAAAATGCCTAAAAA 59.053 36.000 0.00 0.00 34.11 1.94
576 583 6.033966 CGGATGGTAGAAAATGCCTAAAAAC 58.966 40.000 0.00 0.00 34.11 2.43
626 633 2.328819 CTGAGAGGGCAGGAAAGATG 57.671 55.000 0.00 0.00 32.26 2.90
627 634 0.254178 TGAGAGGGCAGGAAAGATGC 59.746 55.000 0.00 0.00 43.09 3.91
634 641 2.375173 GCAGGAAAGATGCCCAAAAG 57.625 50.000 0.00 0.00 37.73 2.27
635 642 1.620323 GCAGGAAAGATGCCCAAAAGT 59.380 47.619 0.00 0.00 37.73 2.66
636 643 2.611224 GCAGGAAAGATGCCCAAAAGTG 60.611 50.000 0.00 0.00 37.73 3.16
639 646 2.351738 GGAAAGATGCCCAAAAGTGACG 60.352 50.000 0.00 0.00 0.00 4.35
642 649 2.359900 AGATGCCCAAAAGTGACGATC 58.640 47.619 0.00 0.00 0.00 3.69
643 650 1.401905 GATGCCCAAAAGTGACGATCC 59.598 52.381 0.00 0.00 0.00 3.36
645 652 1.243902 GCCCAAAAGTGACGATCCAA 58.756 50.000 0.00 0.00 0.00 3.53
646 653 1.068541 GCCCAAAAGTGACGATCCAAC 60.069 52.381 0.00 0.00 0.00 3.77
647 654 1.196808 CCCAAAAGTGACGATCCAACG 59.803 52.381 0.00 0.00 39.31 4.10
648 655 1.196808 CCAAAAGTGACGATCCAACGG 59.803 52.381 0.00 0.00 37.61 4.44
649 656 0.872388 AAAAGTGACGATCCAACGGC 59.128 50.000 0.00 0.00 42.12 5.68
652 659 2.100631 GTGACGATCCAACGGCCTG 61.101 63.158 0.00 0.00 40.96 4.85
655 662 1.945354 GACGATCCAACGGCCTGAGA 61.945 60.000 0.00 0.00 35.00 3.27
656 663 1.227089 CGATCCAACGGCCTGAGAG 60.227 63.158 0.00 0.00 0.00 3.20
762 769 0.901124 CCAGCACTTCAGCTACTCCT 59.099 55.000 0.00 0.00 44.54 3.69
887 894 1.133262 CGGACCCTCCCTCCTTACATA 60.133 57.143 0.00 0.00 31.13 2.29
888 895 2.492940 CGGACCCTCCCTCCTTACATAT 60.493 54.545 0.00 0.00 31.13 1.78
890 897 3.174779 GACCCTCCCTCCTTACATATCC 58.825 54.545 0.00 0.00 0.00 2.59
891 898 2.804440 ACCCTCCCTCCTTACATATCCT 59.196 50.000 0.00 0.00 0.00 3.24
892 899 3.181405 ACCCTCCCTCCTTACATATCCTC 60.181 52.174 0.00 0.00 0.00 3.71
893 900 3.445987 CCTCCCTCCTTACATATCCTCC 58.554 54.545 0.00 0.00 0.00 4.30
895 902 4.349365 CTCCCTCCTTACATATCCTCCTC 58.651 52.174 0.00 0.00 0.00 3.71
896 903 3.077695 TCCCTCCTTACATATCCTCCTCC 59.922 52.174 0.00 0.00 0.00 4.30
898 905 4.349365 CCTCCTTACATATCCTCCTCCTC 58.651 52.174 0.00 0.00 0.00 3.71
899 906 4.349365 CTCCTTACATATCCTCCTCCTCC 58.651 52.174 0.00 0.00 0.00 4.30
900 907 3.997856 TCCTTACATATCCTCCTCCTCCT 59.002 47.826 0.00 0.00 0.00 3.69
901 908 4.423960 TCCTTACATATCCTCCTCCTCCTT 59.576 45.833 0.00 0.00 0.00 3.36
902 909 4.775253 CCTTACATATCCTCCTCCTCCTTC 59.225 50.000 0.00 0.00 0.00 3.46
903 910 3.268034 ACATATCCTCCTCCTCCTTCC 57.732 52.381 0.00 0.00 0.00 3.46
904 911 2.800788 ACATATCCTCCTCCTCCTTCCT 59.199 50.000 0.00 0.00 0.00 3.36
905 912 3.181412 ACATATCCTCCTCCTCCTTCCTC 60.181 52.174 0.00 0.00 0.00 3.71
906 913 0.187361 ATCCTCCTCCTCCTTCCTCG 59.813 60.000 0.00 0.00 0.00 4.63
907 914 2.131067 CCTCCTCCTCCTTCCTCGC 61.131 68.421 0.00 0.00 0.00 5.03
909 916 4.214327 CCTCCTCCTTCCTCGCGC 62.214 72.222 0.00 0.00 0.00 6.86
913 920 4.803426 CTCCTTCCTCGCGCGCTT 62.803 66.667 30.48 0.00 0.00 4.68
914 921 4.796231 TCCTTCCTCGCGCGCTTC 62.796 66.667 30.48 0.00 0.00 3.86
915 922 4.803426 CCTTCCTCGCGCGCTTCT 62.803 66.667 30.48 0.00 0.00 2.85
916 923 3.251043 CTTCCTCGCGCGCTTCTC 61.251 66.667 30.48 0.00 0.00 2.87
927 934 4.415332 GCTTCTCGTCCACGCCGA 62.415 66.667 0.00 0.00 39.60 5.54
984 991 4.603535 GCCCAACCCACCAGCACT 62.604 66.667 0.00 0.00 0.00 4.40
985 992 2.198426 CCCAACCCACCAGCACTT 59.802 61.111 0.00 0.00 0.00 3.16
986 993 1.903404 CCCAACCCACCAGCACTTC 60.903 63.158 0.00 0.00 0.00 3.01
987 994 1.152777 CCAACCCACCAGCACTTCA 60.153 57.895 0.00 0.00 0.00 3.02
988 995 1.174712 CCAACCCACCAGCACTTCAG 61.175 60.000 0.00 0.00 0.00 3.02
989 996 1.529244 AACCCACCAGCACTTCAGC 60.529 57.895 0.00 0.00 0.00 4.26
991 998 1.127567 ACCCACCAGCACTTCAGCTA 61.128 55.000 0.00 0.00 44.54 3.32
993 1000 0.322975 CCACCAGCACTTCAGCTACT 59.677 55.000 0.00 0.00 44.54 2.57
994 1001 1.674221 CCACCAGCACTTCAGCTACTC 60.674 57.143 0.00 0.00 44.54 2.59
997 1004 1.277557 CCAGCACTTCAGCTACTCCTT 59.722 52.381 0.00 0.00 44.54 3.36
998 1005 2.615869 CAGCACTTCAGCTACTCCTTC 58.384 52.381 0.00 0.00 44.54 3.46
999 1006 2.233431 CAGCACTTCAGCTACTCCTTCT 59.767 50.000 0.00 0.00 44.54 2.85
1000 1007 2.233431 AGCACTTCAGCTACTCCTTCTG 59.767 50.000 0.00 0.00 44.50 3.02
1001 1008 2.028567 GCACTTCAGCTACTCCTTCTGT 60.029 50.000 0.00 0.00 0.00 3.41
1004 1011 3.761752 ACTTCAGCTACTCCTTCTGTCTC 59.238 47.826 0.00 0.00 0.00 3.36
1005 1012 2.360844 TCAGCTACTCCTTCTGTCTCG 58.639 52.381 0.00 0.00 0.00 4.04
1006 1013 1.099689 AGCTACTCCTTCTGTCTCGC 58.900 55.000 0.00 0.00 0.00 5.03
1008 1015 0.378962 CTACTCCTTCTGTCTCGCCG 59.621 60.000 0.00 0.00 0.00 6.46
1009 1016 0.322277 TACTCCTTCTGTCTCGCCGT 60.322 55.000 0.00 0.00 0.00 5.68
1010 1017 1.137825 CTCCTTCTGTCTCGCCGTC 59.862 63.158 0.00 0.00 0.00 4.79
1011 1018 2.202492 CCTTCTGTCTCGCCGTCG 60.202 66.667 0.00 0.00 0.00 5.12
1012 1019 2.687805 CCTTCTGTCTCGCCGTCGA 61.688 63.158 0.00 0.00 43.28 4.20
1020 1027 2.102357 TCGCCGTCGAGATGCTTC 59.898 61.111 0.00 0.00 40.21 3.86
1022 1029 2.956964 GCCGTCGAGATGCTTCGG 60.957 66.667 4.17 4.17 40.83 4.30
1023 1030 2.798689 CCGTCGAGATGCTTCGGA 59.201 61.111 2.45 0.38 43.22 4.55
1024 1031 1.298713 CCGTCGAGATGCTTCGGAG 60.299 63.158 2.45 0.00 43.22 4.63
1053 1060 4.834453 CTCTGCTCCGCTGCCTGG 62.834 72.222 0.00 0.00 0.00 4.45
1066 1073 4.864334 CCTGGCCCCTCGCATCAC 62.864 72.222 0.00 0.00 40.31 3.06
1067 1074 4.864334 CTGGCCCCTCGCATCACC 62.864 72.222 0.00 0.00 40.31 4.02
1077 1084 3.807538 GCATCACCGGCTGCAGTG 61.808 66.667 16.64 13.92 38.28 3.66
1078 1085 3.129502 CATCACCGGCTGCAGTGG 61.130 66.667 21.23 21.23 34.67 4.00
1090 1097 4.785453 CAGTGGGGAAGCCGGCTC 62.785 72.222 32.93 22.38 0.00 4.70
1092 1099 4.115199 GTGGGGAAGCCGGCTCAT 62.115 66.667 32.93 16.61 0.00 2.90
1094 1101 4.570874 GGGGAAGCCGGCTCATCC 62.571 72.222 31.35 31.35 0.00 3.51
1096 1103 2.514824 GGAAGCCGGCTCATCCAC 60.515 66.667 33.22 19.19 34.01 4.02
1097 1104 2.892425 GAAGCCGGCTCATCCACG 60.892 66.667 32.93 0.00 34.01 4.94
1104 1111 4.492160 GCTCATCCACGCGTCGGA 62.492 66.667 25.43 25.43 36.84 4.55
1115 1122 4.444081 CGTCGGACCCTCCCTCCT 62.444 72.222 1.91 0.00 31.13 3.69
1116 1123 2.039137 GTCGGACCCTCCCTCCTT 59.961 66.667 0.00 0.00 31.13 3.36
1118 1125 1.042003 GTCGGACCCTCCCTCCTTAC 61.042 65.000 0.00 0.00 31.13 2.34
1119 1126 1.001248 CGGACCCTCCCTCCTTACA 59.999 63.158 0.00 0.00 31.13 2.41
1225 1235 1.144936 CGGAGGATGACAAGCTCCC 59.855 63.158 0.00 0.00 31.49 4.30
1236 1246 0.250209 CAAGCTCCCGGGATCATCAG 60.250 60.000 27.07 12.74 0.00 2.90
1315 1325 0.973496 GGTCTCACCCCTCTCACTCC 60.973 65.000 0.00 0.00 30.04 3.85
1335 1345 6.808212 CACTCCCATACACATTCACATTTTTC 59.192 38.462 0.00 0.00 0.00 2.29
1336 1346 6.493115 ACTCCCATACACATTCACATTTTTCA 59.507 34.615 0.00 0.00 0.00 2.69
1337 1347 6.923012 TCCCATACACATTCACATTTTTCAG 58.077 36.000 0.00 0.00 0.00 3.02
1338 1348 6.718912 TCCCATACACATTCACATTTTTCAGA 59.281 34.615 0.00 0.00 0.00 3.27
1363 1373 3.762247 GCGCATGCACATTGGGGT 61.762 61.111 19.57 0.00 42.15 4.95
1364 1374 2.491152 CGCATGCACATTGGGGTC 59.509 61.111 19.57 0.00 0.00 4.46
1365 1375 2.894919 GCATGCACATTGGGGTCC 59.105 61.111 14.21 0.00 0.00 4.46
1516 1527 5.655532 AGTCTTTAATCTCCATTGCTTGCAT 59.344 36.000 0.00 0.00 0.00 3.96
1753 1764 8.772705 CAGCATTCAGGTATTAGAATCTTCTTC 58.227 37.037 0.00 0.00 38.70 2.87
1831 1847 1.588239 TGGCAGAGAGATGGACCATT 58.412 50.000 8.78 0.00 0.00 3.16
1899 1915 4.989279 ATGGTTGTGAGGCATTGTAATC 57.011 40.909 0.00 0.00 0.00 1.75
1942 1958 2.409012 TGCACATCATTTTTGCTGCAG 58.591 42.857 10.11 10.11 37.16 4.41
1943 1959 1.730064 GCACATCATTTTTGCTGCAGG 59.270 47.619 17.12 0.00 33.26 4.85
2235 2251 3.735746 GTGTATGGTTTTCTTGCTTGTGC 59.264 43.478 0.00 0.00 40.20 4.57
2254 2270 1.801178 GCCTCTCCTTTGTCGAACTTG 59.199 52.381 0.00 0.00 0.00 3.16
2308 2324 3.347216 TCAATAGGGCTCAGCAAAGTTC 58.653 45.455 0.00 0.00 0.00 3.01
2833 2849 3.677976 GCTGCCATTGCTTATTTGCTTCT 60.678 43.478 0.00 0.00 38.71 2.85
2834 2850 3.852286 TGCCATTGCTTATTTGCTTCTG 58.148 40.909 0.00 0.00 38.71 3.02
2837 2853 4.506654 GCCATTGCTTATTTGCTTCTGATG 59.493 41.667 0.00 0.00 33.53 3.07
2838 2854 4.506654 CCATTGCTTATTTGCTTCTGATGC 59.493 41.667 8.46 8.46 0.00 3.91
2839 2855 5.348986 CATTGCTTATTTGCTTCTGATGCT 58.651 37.500 15.38 0.00 0.00 3.79
2841 2857 6.513806 TTGCTTATTTGCTTCTGATGCTTA 57.486 33.333 15.38 5.19 0.00 3.09
2842 2858 6.513806 TGCTTATTTGCTTCTGATGCTTAA 57.486 33.333 15.38 10.36 0.00 1.85
2843 2859 6.923012 TGCTTATTTGCTTCTGATGCTTAAA 58.077 32.000 15.38 9.48 0.00 1.52
2844 2860 6.808212 TGCTTATTTGCTTCTGATGCTTAAAC 59.192 34.615 15.38 7.89 0.00 2.01
2846 2862 7.543520 GCTTATTTGCTTCTGATGCTTAAACTT 59.456 33.333 15.38 0.38 0.00 2.66
2850 2866 5.003160 TGCTTCTGATGCTTAAACTTGCTA 58.997 37.500 15.38 0.00 0.00 3.49
2851 2867 5.473162 TGCTTCTGATGCTTAAACTTGCTAA 59.527 36.000 15.38 0.00 0.00 3.09
2852 2868 6.151648 TGCTTCTGATGCTTAAACTTGCTAAT 59.848 34.615 15.38 0.00 0.00 1.73
2853 2869 6.471519 GCTTCTGATGCTTAAACTTGCTAATG 59.528 38.462 8.16 0.00 0.00 1.90
2854 2870 7.627088 GCTTCTGATGCTTAAACTTGCTAATGA 60.627 37.037 8.16 0.00 0.00 2.57
2938 2954 2.079925 CTCTGTTGGACTGCCTTTAGC 58.920 52.381 0.00 0.00 44.14 3.09
3181 3198 9.289303 CGCTTAAAGATTAATTACTGTGCAATT 57.711 29.630 0.00 0.00 0.00 2.32
3569 3586 8.044060 TGATAGTCTTCAGGTTTGCATTTTAG 57.956 34.615 0.00 0.00 0.00 1.85
3982 3999 0.694771 TCAAGCACTCTGCCAAGGAT 59.305 50.000 0.00 0.00 46.52 3.24
3997 4014 1.999648 AGGATGCTTCAGGTTTGCAA 58.000 45.000 0.00 0.00 40.24 4.08
3998 4015 1.615392 AGGATGCTTCAGGTTTGCAAC 59.385 47.619 0.00 0.00 40.24 4.17
4039 4057 4.808364 GCTTGTTTGTACTTTTCATGGCAA 59.192 37.500 0.00 0.00 0.00 4.52
4056 4074 2.232208 GGCAAGGCAAGCATTTCTTACT 59.768 45.455 3.65 0.00 32.74 2.24
4077 4095 6.354794 ACTAGGCTTGTGTCTGTTGTTATA 57.645 37.500 0.00 0.00 0.00 0.98
4079 4097 7.042335 ACTAGGCTTGTGTCTGTTGTTATATC 58.958 38.462 0.00 0.00 0.00 1.63
4104 4122 4.803924 GCAGATGATATTTCCGTCCATGGA 60.804 45.833 11.44 11.44 35.83 3.41
4170 4188 2.799176 GGTGGAAGCCCTTATGCAG 58.201 57.895 0.00 0.00 0.00 4.41
4323 4341 2.028748 GGCCATTGTCAACAAGAAGCAT 60.029 45.455 0.00 0.00 39.47 3.79
4332 4350 2.439156 AAGAAGCATGGCTCGCCC 60.439 61.111 5.33 0.00 38.25 6.13
4389 4407 7.737869 TCCTTTGTGTAATCTGTTAACCAGTA 58.262 34.615 2.48 0.00 42.19 2.74
4476 4506 5.072741 TGAGTTCAGAGCAGGCTTTATTTT 58.927 37.500 0.00 0.00 0.00 1.82
4506 4536 6.238759 GGCTATTTTCTTGTATGCTACTTGGG 60.239 42.308 0.00 0.00 0.00 4.12
4516 4546 0.669625 GCTACTTGGGGTGTCGTGTC 60.670 60.000 0.00 0.00 0.00 3.67
4537 4567 4.807304 GTCGAGTAACAACTCCTGAAAACA 59.193 41.667 0.18 0.00 33.38 2.83
4544 4574 4.460263 ACAACTCCTGAAAACATGTGCTA 58.540 39.130 0.00 0.00 0.00 3.49
4577 4607 3.627395 AATGTTATCGGGTTGCTCTCA 57.373 42.857 0.00 0.00 0.00 3.27
4578 4608 2.672961 TGTTATCGGGTTGCTCTCAG 57.327 50.000 0.00 0.00 0.00 3.35
4579 4609 1.291132 GTTATCGGGTTGCTCTCAGC 58.709 55.000 0.00 0.00 42.82 4.26
4580 4610 1.134670 GTTATCGGGTTGCTCTCAGCT 60.135 52.381 0.00 0.00 42.97 4.24
4581 4611 0.747255 TATCGGGTTGCTCTCAGCTC 59.253 55.000 0.00 0.00 42.97 4.09
4582 4612 0.975040 ATCGGGTTGCTCTCAGCTCT 60.975 55.000 0.00 0.00 42.97 4.09
4584 4614 1.220477 GGGTTGCTCTCAGCTCTCC 59.780 63.158 0.00 0.00 42.97 3.71
4585 4615 1.264045 GGGTTGCTCTCAGCTCTCCT 61.264 60.000 0.00 0.00 42.97 3.69
4586 4616 1.479709 GGTTGCTCTCAGCTCTCCTA 58.520 55.000 0.00 0.00 42.97 2.94
4587 4617 1.408702 GGTTGCTCTCAGCTCTCCTAG 59.591 57.143 0.00 0.00 42.97 3.02
4588 4618 2.099405 GTTGCTCTCAGCTCTCCTAGT 58.901 52.381 0.00 0.00 42.97 2.57
4589 4619 2.051334 TGCTCTCAGCTCTCCTAGTC 57.949 55.000 0.00 0.00 42.97 2.59
4590 4620 1.563879 TGCTCTCAGCTCTCCTAGTCT 59.436 52.381 0.00 0.00 42.97 3.24
4591 4621 2.025416 TGCTCTCAGCTCTCCTAGTCTT 60.025 50.000 0.00 0.00 42.97 3.01
4592 4622 3.201045 TGCTCTCAGCTCTCCTAGTCTTA 59.799 47.826 0.00 0.00 42.97 2.10
4593 4623 3.815401 GCTCTCAGCTCTCCTAGTCTTAG 59.185 52.174 0.00 0.00 38.45 2.18
4636 4666 2.579787 CATCAGCGGGTCGTCGTC 60.580 66.667 0.00 0.00 0.00 4.20
4647 4677 2.412089 GGGTCGTCGTCTGATTTTTCTG 59.588 50.000 0.00 0.00 0.00 3.02
4702 4732 3.521531 TGAGTGCCTGGTCCATGTATTAA 59.478 43.478 0.00 0.00 0.00 1.40
4808 4840 6.824305 AGGAATTCTTGGTGTTTGACATAG 57.176 37.500 5.23 0.00 0.00 2.23
4812 4844 6.808008 ATTCTTGGTGTTTGACATAGTGAG 57.192 37.500 0.00 0.00 0.00 3.51
4860 4892 1.485294 TACCGACCCTGGTTGCATGT 61.485 55.000 0.00 0.00 43.56 3.21
4880 4912 3.509575 TGTATTGTTCCAACTTGCCATCC 59.490 43.478 0.00 0.00 0.00 3.51
5032 5080 1.008206 AGAGCTGAGATGGAGGAAGGT 59.992 52.381 0.00 0.00 0.00 3.50
5055 5103 9.178758 AGGTTAGCTTCATTTACTTGATTTAGG 57.821 33.333 0.00 0.00 0.00 2.69
5056 5104 8.406297 GGTTAGCTTCATTTACTTGATTTAGGG 58.594 37.037 0.00 0.00 0.00 3.53
5057 5105 6.456795 AGCTTCATTTACTTGATTTAGGGC 57.543 37.500 0.00 0.00 0.00 5.19
5058 5106 5.360999 AGCTTCATTTACTTGATTTAGGGCC 59.639 40.000 0.00 0.00 0.00 5.80
5059 5107 5.360999 GCTTCATTTACTTGATTTAGGGCCT 59.639 40.000 12.58 12.58 0.00 5.19
5060 5108 6.681368 GCTTCATTTACTTGATTTAGGGCCTG 60.681 42.308 18.53 0.00 0.00 4.85
5061 5109 5.826643 TCATTTACTTGATTTAGGGCCTGT 58.173 37.500 18.53 5.93 0.00 4.00
5062 5110 6.252995 TCATTTACTTGATTTAGGGCCTGTT 58.747 36.000 18.53 0.00 0.00 3.16
5063 5111 6.377146 TCATTTACTTGATTTAGGGCCTGTTC 59.623 38.462 18.53 10.65 0.00 3.18
5064 5112 2.711542 ACTTGATTTAGGGCCTGTTCG 58.288 47.619 18.53 0.30 0.00 3.95
5065 5113 2.017049 CTTGATTTAGGGCCTGTTCGG 58.983 52.381 18.53 3.84 0.00 4.30
5066 5114 1.281419 TGATTTAGGGCCTGTTCGGA 58.719 50.000 18.53 0.00 33.16 4.55
5067 5115 1.209504 TGATTTAGGGCCTGTTCGGAG 59.790 52.381 18.53 0.00 33.16 4.63
5068 5116 1.485066 GATTTAGGGCCTGTTCGGAGA 59.515 52.381 18.53 0.00 33.16 3.71
5069 5117 0.611714 TTTAGGGCCTGTTCGGAGAC 59.388 55.000 18.53 0.00 34.32 3.36
5070 5118 1.262640 TTAGGGCCTGTTCGGAGACC 61.263 60.000 18.53 0.00 34.32 3.85
5071 5119 4.097361 GGGCCTGTTCGGAGACCC 62.097 72.222 0.84 0.00 34.32 4.46
5092 5140 4.459089 GCTCCACGAGGCCACTCC 62.459 72.222 5.01 0.00 40.77 3.85
5093 5141 3.775654 CTCCACGAGGCCACTCCC 61.776 72.222 5.01 0.00 40.77 4.30
5096 5144 3.066190 CACGAGGCCACTCCCGTA 61.066 66.667 5.01 0.00 40.77 4.02
5097 5145 2.754658 ACGAGGCCACTCCCGTAG 60.755 66.667 5.01 0.00 40.77 3.51
5098 5146 4.208686 CGAGGCCACTCCCGTAGC 62.209 72.222 5.01 0.00 40.77 3.58
5099 5147 4.208686 GAGGCCACTCCCGTAGCG 62.209 72.222 5.01 0.00 37.79 4.26
5110 5158 4.867599 CGTAGCGGGCGGAGTTCC 62.868 72.222 0.00 0.00 0.00 3.62
5111 5159 3.766691 GTAGCGGGCGGAGTTCCA 61.767 66.667 0.00 0.00 35.14 3.53
5112 5160 3.458163 TAGCGGGCGGAGTTCCAG 61.458 66.667 0.00 0.00 35.14 3.86
5114 5162 4.699522 GCGGGCGGAGTTCCAGTT 62.700 66.667 0.00 0.00 35.14 3.16
5115 5163 2.975536 CGGGCGGAGTTCCAGTTA 59.024 61.111 0.00 0.00 35.14 2.24
5116 5164 1.294138 CGGGCGGAGTTCCAGTTAA 59.706 57.895 0.00 0.00 35.14 2.01
5117 5165 0.320946 CGGGCGGAGTTCCAGTTAAA 60.321 55.000 0.00 0.00 35.14 1.52
5118 5166 1.878948 CGGGCGGAGTTCCAGTTAAAA 60.879 52.381 0.00 0.00 35.14 1.52
5119 5167 2.232399 GGGCGGAGTTCCAGTTAAAAA 58.768 47.619 0.00 0.00 35.14 1.94
5120 5168 2.823747 GGGCGGAGTTCCAGTTAAAAAT 59.176 45.455 0.00 0.00 35.14 1.82
5121 5169 3.119602 GGGCGGAGTTCCAGTTAAAAATC 60.120 47.826 0.00 0.00 35.14 2.17
5122 5170 3.425758 GGCGGAGTTCCAGTTAAAAATCG 60.426 47.826 0.00 0.00 35.14 3.34
5123 5171 3.187842 GCGGAGTTCCAGTTAAAAATCGT 59.812 43.478 0.00 0.00 35.14 3.73
5124 5172 4.708601 CGGAGTTCCAGTTAAAAATCGTG 58.291 43.478 0.00 0.00 35.14 4.35
5125 5173 4.378046 CGGAGTTCCAGTTAAAAATCGTGG 60.378 45.833 0.00 0.00 35.14 4.94
5126 5174 4.758165 GGAGTTCCAGTTAAAAATCGTGGA 59.242 41.667 0.00 0.00 35.45 4.02
5127 5175 5.106673 GGAGTTCCAGTTAAAAATCGTGGAG 60.107 44.000 0.00 0.00 38.53 3.86
5128 5176 4.215613 AGTTCCAGTTAAAAATCGTGGAGC 59.784 41.667 0.00 0.00 38.53 4.70
5129 5177 3.745799 TCCAGTTAAAAATCGTGGAGCA 58.254 40.909 0.00 0.00 32.21 4.26
5130 5178 3.500680 TCCAGTTAAAAATCGTGGAGCAC 59.499 43.478 0.00 0.00 32.21 4.40
5139 5187 3.799753 GTGGAGCACGCATGTAGG 58.200 61.111 0.00 0.00 0.00 3.18
5140 5188 1.079127 GTGGAGCACGCATGTAGGT 60.079 57.895 0.00 0.00 0.00 3.08
5141 5189 0.174845 GTGGAGCACGCATGTAGGTA 59.825 55.000 0.00 0.00 0.00 3.08
5142 5190 0.174845 TGGAGCACGCATGTAGGTAC 59.825 55.000 0.00 0.00 0.00 3.34
5143 5191 0.460311 GGAGCACGCATGTAGGTACT 59.540 55.000 0.00 0.00 46.37 2.73
5144 5192 1.134788 GGAGCACGCATGTAGGTACTT 60.135 52.381 0.00 0.00 41.75 2.24
5145 5193 2.618053 GAGCACGCATGTAGGTACTTT 58.382 47.619 0.00 0.00 41.75 2.66
5146 5194 2.603560 GAGCACGCATGTAGGTACTTTC 59.396 50.000 0.00 0.00 41.75 2.62
5147 5195 2.233922 AGCACGCATGTAGGTACTTTCT 59.766 45.455 0.00 0.00 41.75 2.52
5148 5196 3.446161 AGCACGCATGTAGGTACTTTCTA 59.554 43.478 0.00 0.00 41.75 2.10
5149 5197 3.797256 GCACGCATGTAGGTACTTTCTAG 59.203 47.826 0.00 0.00 41.75 2.43
5150 5198 4.439700 GCACGCATGTAGGTACTTTCTAGA 60.440 45.833 0.00 0.00 41.75 2.43
5151 5199 5.736492 GCACGCATGTAGGTACTTTCTAGAT 60.736 44.000 0.00 0.00 41.75 1.98
5152 5200 6.273825 CACGCATGTAGGTACTTTCTAGATT 58.726 40.000 0.00 0.00 41.75 2.40
5153 5201 6.418226 CACGCATGTAGGTACTTTCTAGATTC 59.582 42.308 0.00 0.00 41.75 2.52
5154 5202 5.921408 CGCATGTAGGTACTTTCTAGATTCC 59.079 44.000 0.00 0.00 41.75 3.01
5155 5203 5.921408 GCATGTAGGTACTTTCTAGATTCCG 59.079 44.000 0.00 0.00 41.75 4.30
5156 5204 6.238953 GCATGTAGGTACTTTCTAGATTCCGA 60.239 42.308 0.00 0.00 41.75 4.55
5157 5205 7.683704 GCATGTAGGTACTTTCTAGATTCCGAA 60.684 40.741 0.00 0.00 41.75 4.30
5158 5206 7.707624 TGTAGGTACTTTCTAGATTCCGAAA 57.292 36.000 0.00 0.00 41.75 3.46
5159 5207 8.302515 TGTAGGTACTTTCTAGATTCCGAAAT 57.697 34.615 0.00 0.00 41.75 2.17
5160 5208 8.755977 TGTAGGTACTTTCTAGATTCCGAAATT 58.244 33.333 0.00 0.00 41.75 1.82
5161 5209 9.597170 GTAGGTACTTTCTAGATTCCGAAATTT 57.403 33.333 0.00 0.00 41.75 1.82
5162 5210 8.719560 AGGTACTTTCTAGATTCCGAAATTTC 57.280 34.615 8.20 8.20 27.25 2.17
5163 5211 8.319146 AGGTACTTTCTAGATTCCGAAATTTCA 58.681 33.333 17.99 0.00 27.25 2.69
5164 5212 8.604890 GGTACTTTCTAGATTCCGAAATTTCAG 58.395 37.037 17.99 7.03 0.00 3.02
5165 5213 7.617041 ACTTTCTAGATTCCGAAATTTCAGG 57.383 36.000 17.99 17.80 0.00 3.86
5166 5214 6.599638 ACTTTCTAGATTCCGAAATTTCAGGG 59.400 38.462 17.99 11.66 0.00 4.45
5167 5215 5.950544 TCTAGATTCCGAAATTTCAGGGA 57.049 39.130 17.99 13.69 0.00 4.20
5168 5216 5.918608 TCTAGATTCCGAAATTTCAGGGAG 58.081 41.667 17.99 11.60 0.00 4.30
5169 5217 3.282885 AGATTCCGAAATTTCAGGGAGC 58.717 45.455 17.99 15.79 0.00 4.70
5170 5218 2.577606 TTCCGAAATTTCAGGGAGCA 57.422 45.000 17.99 1.47 0.00 4.26
5171 5219 2.113860 TCCGAAATTTCAGGGAGCAG 57.886 50.000 17.99 0.00 0.00 4.24
5172 5220 1.098050 CCGAAATTTCAGGGAGCAGG 58.902 55.000 17.99 4.75 0.00 4.85
5173 5221 1.614317 CCGAAATTTCAGGGAGCAGGT 60.614 52.381 17.99 0.00 0.00 4.00
5174 5222 1.470098 CGAAATTTCAGGGAGCAGGTG 59.530 52.381 17.99 0.00 0.00 4.00
5175 5223 1.821136 GAAATTTCAGGGAGCAGGTGG 59.179 52.381 13.40 0.00 0.00 4.61
5176 5224 0.779997 AATTTCAGGGAGCAGGTGGT 59.220 50.000 0.00 0.00 0.00 4.16
5177 5225 0.779997 ATTTCAGGGAGCAGGTGGTT 59.220 50.000 0.00 0.00 0.00 3.67
5178 5226 1.440618 TTTCAGGGAGCAGGTGGTTA 58.559 50.000 0.00 0.00 0.00 2.85
5179 5227 1.668826 TTCAGGGAGCAGGTGGTTAT 58.331 50.000 0.00 0.00 0.00 1.89
5180 5228 1.204146 TCAGGGAGCAGGTGGTTATC 58.796 55.000 0.00 0.00 0.00 1.75
5181 5229 0.181350 CAGGGAGCAGGTGGTTATCC 59.819 60.000 0.00 0.00 0.00 2.59
5182 5230 1.146263 GGGAGCAGGTGGTTATCCG 59.854 63.158 0.00 0.00 36.30 4.18
5183 5231 1.335132 GGGAGCAGGTGGTTATCCGA 61.335 60.000 0.00 0.00 36.30 4.55
5184 5232 0.539986 GGAGCAGGTGGTTATCCGAA 59.460 55.000 0.00 0.00 36.30 4.30
5185 5233 1.653151 GAGCAGGTGGTTATCCGAAC 58.347 55.000 0.00 0.00 36.30 3.95
5186 5234 0.981183 AGCAGGTGGTTATCCGAACA 59.019 50.000 0.00 0.00 36.30 3.18
5187 5235 1.066143 AGCAGGTGGTTATCCGAACAG 60.066 52.381 0.00 0.00 36.30 3.16
5188 5236 2.012051 GCAGGTGGTTATCCGAACAGG 61.012 57.143 0.00 0.00 42.97 4.00
5189 5237 0.252197 AGGTGGTTATCCGAACAGGC 59.748 55.000 0.00 0.00 40.77 4.85
5190 5238 0.746923 GGTGGTTATCCGAACAGGCC 60.747 60.000 0.00 0.00 40.77 5.19
5191 5239 0.746923 GTGGTTATCCGAACAGGCCC 60.747 60.000 0.00 0.00 40.77 5.80
5192 5240 0.912487 TGGTTATCCGAACAGGCCCT 60.912 55.000 0.00 0.00 40.77 5.19
5193 5241 0.255033 GGTTATCCGAACAGGCCCTT 59.745 55.000 0.00 0.00 40.77 3.95
5194 5242 1.487558 GGTTATCCGAACAGGCCCTTA 59.512 52.381 0.00 0.00 40.77 2.69
5195 5243 2.484947 GGTTATCCGAACAGGCCCTTAG 60.485 54.545 0.00 0.00 40.77 2.18
5196 5244 2.169978 GTTATCCGAACAGGCCCTTAGT 59.830 50.000 0.00 0.00 40.77 2.24
5197 5245 0.831307 ATCCGAACAGGCCCTTAGTC 59.169 55.000 0.00 0.00 40.77 2.59
5198 5246 1.153628 CCGAACAGGCCCTTAGTCG 60.154 63.158 0.00 1.64 0.00 4.18
5199 5247 1.590147 CGAACAGGCCCTTAGTCGT 59.410 57.895 0.00 0.00 0.00 4.34
5200 5248 0.037605 CGAACAGGCCCTTAGTCGTT 60.038 55.000 0.00 0.00 0.00 3.85
5201 5249 1.607251 CGAACAGGCCCTTAGTCGTTT 60.607 52.381 0.00 0.00 0.00 3.60
5202 5250 1.804748 GAACAGGCCCTTAGTCGTTTG 59.195 52.381 0.00 0.00 0.00 2.93
5203 5251 1.053424 ACAGGCCCTTAGTCGTTTGA 58.947 50.000 0.00 0.00 0.00 2.69
5204 5252 1.418637 ACAGGCCCTTAGTCGTTTGAA 59.581 47.619 0.00 0.00 0.00 2.69
5205 5253 2.039879 ACAGGCCCTTAGTCGTTTGAAT 59.960 45.455 0.00 0.00 0.00 2.57
5206 5254 3.081804 CAGGCCCTTAGTCGTTTGAATT 58.918 45.455 0.00 0.00 0.00 2.17
5207 5255 3.506067 CAGGCCCTTAGTCGTTTGAATTT 59.494 43.478 0.00 0.00 0.00 1.82
5208 5256 3.756963 AGGCCCTTAGTCGTTTGAATTTC 59.243 43.478 0.00 0.00 0.00 2.17
5209 5257 3.756963 GGCCCTTAGTCGTTTGAATTTCT 59.243 43.478 0.00 0.00 0.00 2.52
5210 5258 4.379499 GGCCCTTAGTCGTTTGAATTTCTG 60.379 45.833 0.00 0.00 0.00 3.02
5310 5358 3.587797 AGTGTCATAGGTGTGGTAACG 57.412 47.619 0.00 0.00 42.51 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.790962 CATGGCCCTCGTGCTGCT 62.791 66.667 0.00 0.00 0.00 4.24
167 168 1.211457 CTCCTTGTCTAGCAGGCCATT 59.789 52.381 5.01 0.00 0.00 3.16
308 309 3.636231 CCTCCCCGCAACCACTCA 61.636 66.667 0.00 0.00 0.00 3.41
346 347 2.426522 CATCGGGAAAAAGAGCAGACA 58.573 47.619 0.00 0.00 0.00 3.41
445 446 7.447374 TTTTCGGCTTCTGAGATTAAATTGA 57.553 32.000 0.00 0.00 0.00 2.57
559 566 6.183360 GGATCGTCGTTTTTAGGCATTTTCTA 60.183 38.462 0.00 0.00 0.00 2.10
570 577 1.460359 GCCGTTGGATCGTCGTTTTTA 59.540 47.619 0.00 0.00 0.00 1.52
575 582 3.687102 TGGCCGTTGGATCGTCGT 61.687 61.111 0.00 0.00 0.00 4.34
576 583 3.186047 GTGGCCGTTGGATCGTCG 61.186 66.667 0.00 0.00 0.00 5.12
620 627 2.582052 TCGTCACTTTTGGGCATCTTT 58.418 42.857 0.00 0.00 0.00 2.52
621 628 2.270352 TCGTCACTTTTGGGCATCTT 57.730 45.000 0.00 0.00 0.00 2.40
623 630 1.401905 GGATCGTCACTTTTGGGCATC 59.598 52.381 0.00 0.00 0.00 3.91
625 632 0.109532 TGGATCGTCACTTTTGGGCA 59.890 50.000 0.00 0.00 0.00 5.36
626 633 1.068541 GTTGGATCGTCACTTTTGGGC 60.069 52.381 0.00 0.00 0.00 5.36
627 634 1.196808 CGTTGGATCGTCACTTTTGGG 59.803 52.381 0.00 0.00 0.00 4.12
629 636 1.399727 GCCGTTGGATCGTCACTTTTG 60.400 52.381 0.00 0.00 0.00 2.44
630 637 0.872388 GCCGTTGGATCGTCACTTTT 59.128 50.000 0.00 0.00 0.00 2.27
631 638 0.953960 GGCCGTTGGATCGTCACTTT 60.954 55.000 0.00 0.00 0.00 2.66
632 639 1.375523 GGCCGTTGGATCGTCACTT 60.376 57.895 0.00 0.00 0.00 3.16
634 641 2.100631 CAGGCCGTTGGATCGTCAC 61.101 63.158 0.00 0.00 0.00 3.67
635 642 2.225791 CTCAGGCCGTTGGATCGTCA 62.226 60.000 0.00 0.00 0.00 4.35
636 643 1.519455 CTCAGGCCGTTGGATCGTC 60.519 63.158 0.00 0.00 0.00 4.20
639 646 1.144936 CCTCTCAGGCCGTTGGATC 59.855 63.158 0.00 0.00 0.00 3.36
642 649 4.101448 CCCCTCTCAGGCCGTTGG 62.101 72.222 0.00 0.00 32.73 3.77
643 650 1.550130 TTACCCCTCTCAGGCCGTTG 61.550 60.000 0.00 0.00 32.73 4.10
645 652 1.003051 ATTACCCCTCTCAGGCCGT 59.997 57.895 0.00 0.00 32.73 5.68
646 653 1.048724 TGATTACCCCTCTCAGGCCG 61.049 60.000 0.00 0.00 32.73 6.13
647 654 1.213296 TTGATTACCCCTCTCAGGCC 58.787 55.000 0.00 0.00 32.73 5.19
648 655 2.239907 ACTTTGATTACCCCTCTCAGGC 59.760 50.000 0.00 0.00 32.73 4.85
649 656 3.519510 TCACTTTGATTACCCCTCTCAGG 59.480 47.826 0.00 0.00 34.30 3.86
652 659 5.301555 GCTATCACTTTGATTACCCCTCTC 58.698 45.833 0.00 0.00 38.26 3.20
655 662 3.138468 GGGCTATCACTTTGATTACCCCT 59.862 47.826 12.24 0.00 41.38 4.79
656 663 3.487372 GGGCTATCACTTTGATTACCCC 58.513 50.000 12.24 8.11 41.38 4.95
887 894 0.187361 CGAGGAAGGAGGAGGAGGAT 59.813 60.000 0.00 0.00 0.00 3.24
888 895 1.615814 CGAGGAAGGAGGAGGAGGA 59.384 63.158 0.00 0.00 0.00 3.71
890 897 2.485795 CGCGAGGAAGGAGGAGGAG 61.486 68.421 0.00 0.00 0.00 3.69
891 898 2.440430 CGCGAGGAAGGAGGAGGA 60.440 66.667 0.00 0.00 0.00 3.71
892 899 4.214327 GCGCGAGGAAGGAGGAGG 62.214 72.222 12.10 0.00 0.00 4.30
893 900 4.560856 CGCGCGAGGAAGGAGGAG 62.561 72.222 28.94 0.00 0.00 3.69
896 903 4.803426 AAGCGCGCGAGGAAGGAG 62.803 66.667 37.18 0.23 0.00 3.69
898 905 4.803426 AGAAGCGCGCGAGGAAGG 62.803 66.667 37.18 2.07 0.00 3.46
899 906 3.251043 GAGAAGCGCGCGAGGAAG 61.251 66.667 37.18 2.99 0.00 3.46
911 918 2.504244 GTCGGCGTGGACGAGAAG 60.504 66.667 6.85 0.00 46.55 2.85
967 974 4.603535 AGTGCTGGTGGGTTGGGC 62.604 66.667 0.00 0.00 0.00 5.36
968 975 1.903404 GAAGTGCTGGTGGGTTGGG 60.903 63.158 0.00 0.00 0.00 4.12
969 976 1.152777 TGAAGTGCTGGTGGGTTGG 60.153 57.895 0.00 0.00 0.00 3.77
970 977 1.799258 GCTGAAGTGCTGGTGGGTTG 61.799 60.000 0.00 0.00 0.00 3.77
971 978 1.529244 GCTGAAGTGCTGGTGGGTT 60.529 57.895 0.00 0.00 0.00 4.11
972 979 1.127567 TAGCTGAAGTGCTGGTGGGT 61.128 55.000 0.00 0.00 43.87 4.51
975 982 1.674221 GGAGTAGCTGAAGTGCTGGTG 60.674 57.143 0.00 0.00 43.87 4.17
976 983 0.610687 GGAGTAGCTGAAGTGCTGGT 59.389 55.000 0.00 0.00 43.87 4.00
977 984 0.901124 AGGAGTAGCTGAAGTGCTGG 59.099 55.000 0.00 0.00 43.87 4.85
979 986 2.233431 CAGAAGGAGTAGCTGAAGTGCT 59.767 50.000 0.00 0.00 46.11 4.40
980 987 2.028567 ACAGAAGGAGTAGCTGAAGTGC 60.029 50.000 0.00 0.00 33.94 4.40
981 988 3.509575 AGACAGAAGGAGTAGCTGAAGTG 59.490 47.826 0.00 0.00 33.94 3.16
982 989 3.761752 GAGACAGAAGGAGTAGCTGAAGT 59.238 47.826 0.00 0.00 33.94 3.01
983 990 3.181501 CGAGACAGAAGGAGTAGCTGAAG 60.182 52.174 0.00 0.00 33.94 3.02
984 991 2.750166 CGAGACAGAAGGAGTAGCTGAA 59.250 50.000 0.00 0.00 33.94 3.02
985 992 2.360844 CGAGACAGAAGGAGTAGCTGA 58.639 52.381 0.00 0.00 33.94 4.26
986 993 1.202245 GCGAGACAGAAGGAGTAGCTG 60.202 57.143 0.00 0.00 35.81 4.24
987 994 1.099689 GCGAGACAGAAGGAGTAGCT 58.900 55.000 0.00 0.00 0.00 3.32
988 995 0.101579 GGCGAGACAGAAGGAGTAGC 59.898 60.000 0.00 0.00 0.00 3.58
989 996 0.378962 CGGCGAGACAGAAGGAGTAG 59.621 60.000 0.00 0.00 0.00 2.57
990 997 0.322277 ACGGCGAGACAGAAGGAGTA 60.322 55.000 16.62 0.00 0.00 2.59
991 998 1.587933 GACGGCGAGACAGAAGGAGT 61.588 60.000 16.62 0.00 0.00 3.85
993 1000 2.687805 CGACGGCGAGACAGAAGGA 61.688 63.158 16.62 0.00 40.82 3.36
994 1001 2.202492 CGACGGCGAGACAGAAGG 60.202 66.667 16.62 0.00 40.82 3.46
1004 1011 3.315521 CGAAGCATCTCGACGGCG 61.316 66.667 2.87 2.87 41.44 6.46
1005 1012 2.956964 CCGAAGCATCTCGACGGC 60.957 66.667 4.64 0.00 41.44 5.68
1006 1013 1.298713 CTCCGAAGCATCTCGACGG 60.299 63.158 2.21 2.21 41.44 4.79
1049 1056 4.864334 GTGATGCGAGGGGCCAGG 62.864 72.222 4.39 0.00 42.61 4.45
1050 1057 4.864334 GGTGATGCGAGGGGCCAG 62.864 72.222 4.39 0.00 42.61 4.85
1073 1080 4.785453 GAGCCGGCTTCCCCACTG 62.785 72.222 33.34 0.00 0.00 3.66
1075 1082 4.115199 ATGAGCCGGCTTCCCCAC 62.115 66.667 33.34 17.47 0.00 4.61
1077 1084 4.570874 GGATGAGCCGGCTTCCCC 62.571 72.222 33.34 25.84 0.00 4.81
1078 1085 3.797353 TGGATGAGCCGGCTTCCC 61.797 66.667 34.20 30.12 40.66 3.97
1088 1095 2.579787 GTCCGACGCGTGGATGAG 60.580 66.667 25.80 10.49 37.93 2.90
1098 1105 2.563013 TAAGGAGGGAGGGTCCGACG 62.563 65.000 0.00 0.00 39.30 5.12
1099 1106 1.042003 GTAAGGAGGGAGGGTCCGAC 61.042 65.000 0.00 0.00 39.30 4.79
1100 1107 1.309006 GTAAGGAGGGAGGGTCCGA 59.691 63.158 0.00 0.00 39.30 4.55
1101 1108 0.398664 ATGTAAGGAGGGAGGGTCCG 60.399 60.000 0.00 0.00 39.30 4.79
1102 1109 2.789323 TATGTAAGGAGGGAGGGTCC 57.211 55.000 0.00 0.00 35.23 4.46
1103 1110 3.174779 GGATATGTAAGGAGGGAGGGTC 58.825 54.545 0.00 0.00 0.00 4.46
1104 1111 2.804440 AGGATATGTAAGGAGGGAGGGT 59.196 50.000 0.00 0.00 0.00 4.34
1107 1114 4.349365 GAGGAGGATATGTAAGGAGGGAG 58.651 52.174 0.00 0.00 0.00 4.30
1108 1115 3.077695 GGAGGAGGATATGTAAGGAGGGA 59.922 52.174 0.00 0.00 0.00 4.20
1109 1116 3.078305 AGGAGGAGGATATGTAAGGAGGG 59.922 52.174 0.00 0.00 0.00 4.30
1110 1117 4.349365 GAGGAGGAGGATATGTAAGGAGG 58.651 52.174 0.00 0.00 0.00 4.30
1111 1118 4.045334 AGGAGGAGGAGGATATGTAAGGAG 59.955 50.000 0.00 0.00 0.00 3.69
1112 1119 3.997856 AGGAGGAGGAGGATATGTAAGGA 59.002 47.826 0.00 0.00 0.00 3.36
1114 1121 4.775253 GGAAGGAGGAGGAGGATATGTAAG 59.225 50.000 0.00 0.00 0.00 2.34
1115 1122 4.423960 AGGAAGGAGGAGGAGGATATGTAA 59.576 45.833 0.00 0.00 0.00 2.41
1116 1123 3.997856 AGGAAGGAGGAGGAGGATATGTA 59.002 47.826 0.00 0.00 0.00 2.29
1118 1125 3.440127 GAGGAAGGAGGAGGAGGATATG 58.560 54.545 0.00 0.00 0.00 1.78
1119 1126 2.042433 CGAGGAAGGAGGAGGAGGATAT 59.958 54.545 0.00 0.00 0.00 1.63
1225 1235 0.671781 GGAATCGCCTGATGATCCCG 60.672 60.000 0.00 0.00 34.24 5.14
1300 1310 1.015609 TATGGGAGTGAGAGGGGTGA 58.984 55.000 0.00 0.00 0.00 4.02
1315 1325 7.539710 CAGTCTGAAAAATGTGAATGTGTATGG 59.460 37.037 0.00 0.00 0.00 2.74
1335 1345 1.059369 GCATGCGCGTAACAGTCTG 59.941 57.895 8.43 0.00 0.00 3.51
1336 1346 1.374125 TGCATGCGCGTAACAGTCT 60.374 52.632 14.09 0.00 42.97 3.24
1337 1347 1.225745 GTGCATGCGCGTAACAGTC 60.226 57.895 16.63 0.00 42.97 3.51
1338 1348 1.298157 ATGTGCATGCGCGTAACAGT 61.298 50.000 24.01 4.55 42.97 3.55
1363 1373 4.650734 TGTGCATAATCAGAAACACTGGA 58.349 39.130 0.00 0.00 45.76 3.86
1364 1374 5.571784 ATGTGCATAATCAGAAACACTGG 57.428 39.130 0.00 0.00 45.76 4.00
1365 1375 7.085746 TCAAATGTGCATAATCAGAAACACTG 58.914 34.615 0.00 0.00 46.97 3.66
1516 1527 3.634448 ACAACCGAATCACATTTCCACAA 59.366 39.130 0.00 0.00 0.00 3.33
1831 1847 7.363431 TCGTTGCATTGTTATACATGAAACAA 58.637 30.769 19.99 19.99 46.37 2.83
1899 1915 6.879962 CAATGGAAGTGCACAAACATAAAAG 58.120 36.000 21.04 7.13 0.00 2.27
2019 2035 4.819105 ATCGAGTAAATCAACCACTGGA 57.181 40.909 0.71 0.00 32.64 3.86
2235 2251 3.113260 ACAAGTTCGACAAAGGAGAGG 57.887 47.619 0.00 0.00 0.00 3.69
2254 2270 6.743575 ATGCATTAAGAAACAGGACAGTAC 57.256 37.500 0.00 0.00 0.00 2.73
2308 2324 3.369756 TGAGCGCCTTAGTGAAATTAACG 59.630 43.478 2.29 0.00 0.00 3.18
2715 2731 5.577835 TGTGTCACTTTCAAAAGGAAATCG 58.422 37.500 4.27 0.00 44.18 3.34
2850 2866 6.098982 ACACCAAGTATCTAAGCTAGCTCATT 59.901 38.462 19.65 5.00 0.00 2.57
2851 2867 5.600484 ACACCAAGTATCTAAGCTAGCTCAT 59.400 40.000 19.65 12.80 0.00 2.90
2852 2868 4.956700 ACACCAAGTATCTAAGCTAGCTCA 59.043 41.667 19.65 1.27 0.00 4.26
2853 2869 5.523438 ACACCAAGTATCTAAGCTAGCTC 57.477 43.478 19.65 4.00 0.00 4.09
2854 2870 6.551601 ACATACACCAAGTATCTAAGCTAGCT 59.448 38.462 12.68 12.68 41.47 3.32
2938 2954 6.780706 AACCATACAACTTGTAGAAGAACG 57.219 37.500 6.63 0.00 36.14 3.95
3569 3586 3.746492 ACTCAGGTGTAGCGAAACAATTC 59.254 43.478 0.00 0.00 0.00 2.17
3690 3707 4.558226 TCATGTGAGCACCAAAGACTAT 57.442 40.909 0.00 0.00 0.00 2.12
3982 3999 0.814457 AACGTTGCAAACCTGAAGCA 59.186 45.000 0.00 0.00 46.28 3.91
3997 4014 7.435068 ACAAGCAATAAGAGTTCATAAACGT 57.565 32.000 0.00 0.00 40.48 3.99
3998 4015 8.629986 CAAACAAGCAATAAGAGTTCATAAACG 58.370 33.333 0.00 0.00 40.48 3.60
4039 4057 3.054065 AGCCTAGTAAGAAATGCTTGCCT 60.054 43.478 0.00 0.00 39.72 4.75
4056 4074 7.041721 CAGATATAACAACAGACACAAGCCTA 58.958 38.462 0.00 0.00 0.00 3.93
4077 4095 4.040829 TGGACGGAAATATCATCTGCAGAT 59.959 41.667 23.75 23.75 34.56 2.90
4079 4097 3.732212 TGGACGGAAATATCATCTGCAG 58.268 45.455 7.63 7.63 0.00 4.41
4104 4122 3.181429 ACAACTGGGATTGAGTCATTGGT 60.181 43.478 0.00 0.00 33.57 3.67
4170 4188 1.423395 CCTGCTTCTCGTCACAGTTC 58.577 55.000 0.00 0.00 0.00 3.01
4323 4341 3.969250 GAATGGAACGGGCGAGCCA 62.969 63.158 16.65 0.00 37.98 4.75
4332 4350 2.721797 CGCTTTTCACTCGAATGGAACG 60.722 50.000 0.00 0.00 0.00 3.95
4476 4506 5.016173 AGCATACAAGAAAATAGCCCACAA 58.984 37.500 0.00 0.00 0.00 3.33
4506 4536 1.783140 GTTGTTACTCGACACGACACC 59.217 52.381 0.00 0.00 0.00 4.16
4537 4567 6.367983 ACATTTGTATCCATCCTTAGCACAT 58.632 36.000 0.00 0.00 0.00 3.21
4544 4574 6.003950 CCCGATAACATTTGTATCCATCCTT 58.996 40.000 0.00 0.00 0.00 3.36
4577 4607 6.570654 ACTTCTACTAAGACTAGGAGAGCT 57.429 41.667 0.00 0.00 44.47 4.09
4620 4650 2.750637 AGACGACGACCCGCTGAT 60.751 61.111 0.00 0.00 0.00 2.90
4636 4666 4.077822 AGCAAGAGACCCAGAAAAATCAG 58.922 43.478 0.00 0.00 0.00 2.90
4647 4677 1.068055 CAACAATGCAGCAAGAGACCC 60.068 52.381 0.00 0.00 0.00 4.46
4702 4732 0.830444 TACCTGGACTGCTTCACGGT 60.830 55.000 0.00 0.00 42.04 4.83
4808 4840 2.065993 TCTGCGACTGCTTTACTCAC 57.934 50.000 0.00 0.00 43.34 3.51
4812 4844 4.174009 TGTATCTTCTGCGACTGCTTTAC 58.826 43.478 0.00 0.00 43.34 2.01
4860 4892 4.752590 ACAGGATGGCAAGTTGGAACAATA 60.753 41.667 4.75 0.00 43.91 1.90
4908 4942 1.689273 ACCAGTGTGTTCTCTGAGACC 59.311 52.381 6.92 0.22 37.36 3.85
5032 5080 7.068226 GGCCCTAAATCAAGTAAATGAAGCTAA 59.932 37.037 0.00 0.00 32.06 3.09
5074 5122 4.803426 GAGTGGCCTCGTGGAGCG 62.803 72.222 7.92 0.00 43.01 5.03
5075 5123 4.459089 GGAGTGGCCTCGTGGAGC 62.459 72.222 7.92 0.00 38.70 4.70
5076 5124 3.775654 GGGAGTGGCCTCGTGGAG 61.776 72.222 7.92 0.00 38.70 3.86
5079 5127 3.064987 CTACGGGAGTGGCCTCGTG 62.065 68.421 3.32 0.00 46.80 4.35
5080 5128 2.754658 CTACGGGAGTGGCCTCGT 60.755 66.667 3.32 8.94 46.80 4.18
5093 5141 4.867599 GGAACTCCGCCCGCTACG 62.868 72.222 0.00 0.00 0.00 3.51
5094 5142 3.718210 CTGGAACTCCGCCCGCTAC 62.718 68.421 0.00 0.00 39.43 3.58
5095 5143 3.458163 CTGGAACTCCGCCCGCTA 61.458 66.667 0.00 0.00 39.43 4.26
5097 5145 2.791501 TTAACTGGAACTCCGCCCGC 62.792 60.000 0.00 0.00 39.43 6.13
5098 5146 0.320946 TTTAACTGGAACTCCGCCCG 60.321 55.000 0.00 0.00 39.43 6.13
5099 5147 1.900245 TTTTAACTGGAACTCCGCCC 58.100 50.000 0.00 0.00 39.43 6.13
5100 5148 3.425758 CGATTTTTAACTGGAACTCCGCC 60.426 47.826 0.00 0.00 39.43 6.13
5101 5149 3.187842 ACGATTTTTAACTGGAACTCCGC 59.812 43.478 0.00 0.00 39.43 5.54
5102 5150 4.378046 CCACGATTTTTAACTGGAACTCCG 60.378 45.833 0.00 0.00 39.43 4.63
5103 5151 4.758165 TCCACGATTTTTAACTGGAACTCC 59.242 41.667 0.00 0.00 0.00 3.85
5104 5152 5.617087 GCTCCACGATTTTTAACTGGAACTC 60.617 44.000 0.00 0.00 30.54 3.01
5105 5153 4.215613 GCTCCACGATTTTTAACTGGAACT 59.784 41.667 0.00 0.00 30.54 3.01
5106 5154 4.023536 TGCTCCACGATTTTTAACTGGAAC 60.024 41.667 0.00 0.00 30.54 3.62
5107 5155 4.023536 GTGCTCCACGATTTTTAACTGGAA 60.024 41.667 0.00 0.00 30.54 3.53
5108 5156 3.500680 GTGCTCCACGATTTTTAACTGGA 59.499 43.478 0.00 0.00 0.00 3.86
5109 5157 3.821841 GTGCTCCACGATTTTTAACTGG 58.178 45.455 0.00 0.00 0.00 4.00
5122 5170 0.174845 TACCTACATGCGTGCTCCAC 59.825 55.000 5.64 0.00 0.00 4.02
5123 5171 0.174845 GTACCTACATGCGTGCTCCA 59.825 55.000 5.64 0.00 0.00 3.86
5124 5172 0.460311 AGTACCTACATGCGTGCTCC 59.540 55.000 5.64 0.00 0.00 4.70
5125 5173 2.295253 AAGTACCTACATGCGTGCTC 57.705 50.000 5.64 0.00 0.00 4.26
5126 5174 2.233922 AGAAAGTACCTACATGCGTGCT 59.766 45.455 5.64 0.00 0.00 4.40
5127 5175 2.618053 AGAAAGTACCTACATGCGTGC 58.382 47.619 5.64 0.00 0.00 5.34
5128 5176 5.244785 TCTAGAAAGTACCTACATGCGTG 57.755 43.478 3.82 3.82 0.00 5.34
5129 5177 6.461231 GGAATCTAGAAAGTACCTACATGCGT 60.461 42.308 0.00 0.00 0.00 5.24
5130 5178 5.921408 GGAATCTAGAAAGTACCTACATGCG 59.079 44.000 0.00 0.00 0.00 4.73
5131 5179 5.921408 CGGAATCTAGAAAGTACCTACATGC 59.079 44.000 0.00 0.00 0.00 4.06
5132 5180 7.273320 TCGGAATCTAGAAAGTACCTACATG 57.727 40.000 0.00 0.00 0.00 3.21
5133 5181 7.893124 TTCGGAATCTAGAAAGTACCTACAT 57.107 36.000 0.00 0.00 0.00 2.29
5134 5182 7.707624 TTTCGGAATCTAGAAAGTACCTACA 57.292 36.000 0.00 0.00 33.12 2.74
5135 5183 9.597170 AAATTTCGGAATCTAGAAAGTACCTAC 57.403 33.333 0.00 0.00 39.36 3.18
5136 5184 9.813446 GAAATTTCGGAATCTAGAAAGTACCTA 57.187 33.333 1.68 0.00 39.36 3.08
5137 5185 8.319146 TGAAATTTCGGAATCTAGAAAGTACCT 58.681 33.333 13.34 0.00 39.36 3.08
5138 5186 8.488651 TGAAATTTCGGAATCTAGAAAGTACC 57.511 34.615 13.34 0.00 39.36 3.34
5139 5187 8.604890 CCTGAAATTTCGGAATCTAGAAAGTAC 58.395 37.037 25.55 0.00 39.36 2.73
5140 5188 7.769044 CCCTGAAATTTCGGAATCTAGAAAGTA 59.231 37.037 25.55 0.00 39.36 2.24
5141 5189 6.599638 CCCTGAAATTTCGGAATCTAGAAAGT 59.400 38.462 25.55 5.25 39.36 2.66
5142 5190 6.823689 TCCCTGAAATTTCGGAATCTAGAAAG 59.176 38.462 25.55 7.51 39.36 2.62
5143 5191 6.717289 TCCCTGAAATTTCGGAATCTAGAAA 58.283 36.000 25.55 6.83 40.14 2.52
5144 5192 6.308015 TCCCTGAAATTTCGGAATCTAGAA 57.692 37.500 25.55 0.00 35.56 2.10
5145 5193 5.685075 GCTCCCTGAAATTTCGGAATCTAGA 60.685 44.000 25.55 13.09 35.56 2.43
5146 5194 4.513318 GCTCCCTGAAATTTCGGAATCTAG 59.487 45.833 25.55 15.52 35.56 2.43
5147 5195 4.080582 TGCTCCCTGAAATTTCGGAATCTA 60.081 41.667 25.55 8.43 35.56 1.98
5148 5196 3.282885 GCTCCCTGAAATTTCGGAATCT 58.717 45.455 25.55 0.00 35.56 2.40
5149 5197 3.016736 TGCTCCCTGAAATTTCGGAATC 58.983 45.455 25.55 14.55 35.56 2.52
5150 5198 3.019564 CTGCTCCCTGAAATTTCGGAAT 58.980 45.455 25.55 0.00 35.56 3.01
5151 5199 2.436417 CTGCTCCCTGAAATTTCGGAA 58.564 47.619 25.55 13.48 35.56 4.30
5152 5200 1.340017 CCTGCTCCCTGAAATTTCGGA 60.340 52.381 25.55 18.55 35.56 4.55
5153 5201 1.098050 CCTGCTCCCTGAAATTTCGG 58.902 55.000 18.52 18.52 0.00 4.30
5154 5202 1.470098 CACCTGCTCCCTGAAATTTCG 59.530 52.381 13.34 8.11 0.00 3.46
5155 5203 1.821136 CCACCTGCTCCCTGAAATTTC 59.179 52.381 11.41 11.41 0.00 2.17
5156 5204 1.147817 ACCACCTGCTCCCTGAAATTT 59.852 47.619 0.00 0.00 0.00 1.82
5157 5205 0.779997 ACCACCTGCTCCCTGAAATT 59.220 50.000 0.00 0.00 0.00 1.82
5158 5206 0.779997 AACCACCTGCTCCCTGAAAT 59.220 50.000 0.00 0.00 0.00 2.17
5159 5207 1.440618 TAACCACCTGCTCCCTGAAA 58.559 50.000 0.00 0.00 0.00 2.69
5160 5208 1.559682 GATAACCACCTGCTCCCTGAA 59.440 52.381 0.00 0.00 0.00 3.02
5161 5209 1.204146 GATAACCACCTGCTCCCTGA 58.796 55.000 0.00 0.00 0.00 3.86
5162 5210 0.181350 GGATAACCACCTGCTCCCTG 59.819 60.000 0.00 0.00 35.97 4.45
5163 5211 1.338136 CGGATAACCACCTGCTCCCT 61.338 60.000 0.00 0.00 35.59 4.20
5164 5212 1.146263 CGGATAACCACCTGCTCCC 59.854 63.158 0.00 0.00 35.59 4.30
5165 5213 0.539986 TTCGGATAACCACCTGCTCC 59.460 55.000 0.00 0.00 35.59 4.70
5166 5214 1.066430 TGTTCGGATAACCACCTGCTC 60.066 52.381 0.00 0.00 35.59 4.26
5167 5215 0.981183 TGTTCGGATAACCACCTGCT 59.019 50.000 0.00 0.00 35.59 4.24
5168 5216 1.369625 CTGTTCGGATAACCACCTGC 58.630 55.000 0.00 0.00 35.59 4.85
5169 5217 2.012051 GCCTGTTCGGATAACCACCTG 61.012 57.143 0.00 0.00 35.59 4.00
5170 5218 0.252197 GCCTGTTCGGATAACCACCT 59.748 55.000 0.00 0.00 35.59 4.00
5171 5219 0.746923 GGCCTGTTCGGATAACCACC 60.747 60.000 0.00 0.00 35.59 4.61
5172 5220 0.746923 GGGCCTGTTCGGATAACCAC 60.747 60.000 0.84 0.00 35.59 4.16
5173 5221 0.912487 AGGGCCTGTTCGGATAACCA 60.912 55.000 4.50 0.00 35.59 3.67
5174 5222 0.255033 AAGGGCCTGTTCGGATAACC 59.745 55.000 6.92 0.00 33.16 2.85
5175 5223 2.169978 ACTAAGGGCCTGTTCGGATAAC 59.830 50.000 6.92 0.00 33.16 1.89
5176 5224 2.433239 GACTAAGGGCCTGTTCGGATAA 59.567 50.000 6.92 0.00 33.16 1.75
5177 5225 2.037144 GACTAAGGGCCTGTTCGGATA 58.963 52.381 6.92 0.00 33.16 2.59
5178 5226 0.831307 GACTAAGGGCCTGTTCGGAT 59.169 55.000 6.92 0.00 33.16 4.18
5179 5227 1.601419 CGACTAAGGGCCTGTTCGGA 61.601 60.000 19.04 0.00 33.16 4.55
5180 5228 1.153628 CGACTAAGGGCCTGTTCGG 60.154 63.158 19.04 6.81 0.00 4.30
5181 5229 0.037605 AACGACTAAGGGCCTGTTCG 60.038 55.000 23.04 23.04 0.00 3.95
5182 5230 1.804748 CAAACGACTAAGGGCCTGTTC 59.195 52.381 6.92 2.66 0.00 3.18
5183 5231 1.418637 TCAAACGACTAAGGGCCTGTT 59.581 47.619 6.92 3.07 0.00 3.16
5184 5232 1.053424 TCAAACGACTAAGGGCCTGT 58.947 50.000 6.92 0.00 0.00 4.00
5185 5233 2.178912 TTCAAACGACTAAGGGCCTG 57.821 50.000 6.92 0.00 0.00 4.85
5186 5234 3.434940 AATTCAAACGACTAAGGGCCT 57.565 42.857 0.00 0.00 0.00 5.19
5187 5235 3.756963 AGAAATTCAAACGACTAAGGGCC 59.243 43.478 0.00 0.00 0.00 5.80
5188 5236 4.454504 TCAGAAATTCAAACGACTAAGGGC 59.545 41.667 0.00 0.00 0.00 5.19
5189 5237 5.122396 CCTCAGAAATTCAAACGACTAAGGG 59.878 44.000 0.00 0.00 0.00 3.95
5190 5238 5.390991 GCCTCAGAAATTCAAACGACTAAGG 60.391 44.000 0.00 0.00 0.00 2.69
5191 5239 5.409826 AGCCTCAGAAATTCAAACGACTAAG 59.590 40.000 0.00 0.00 0.00 2.18
5192 5240 5.179368 CAGCCTCAGAAATTCAAACGACTAA 59.821 40.000 0.00 0.00 0.00 2.24
5193 5241 4.690748 CAGCCTCAGAAATTCAAACGACTA 59.309 41.667 0.00 0.00 0.00 2.59
5194 5242 3.499918 CAGCCTCAGAAATTCAAACGACT 59.500 43.478 0.00 0.00 0.00 4.18
5195 5243 3.365364 CCAGCCTCAGAAATTCAAACGAC 60.365 47.826 0.00 0.00 0.00 4.34
5196 5244 2.813754 CCAGCCTCAGAAATTCAAACGA 59.186 45.455 0.00 0.00 0.00 3.85
5197 5245 2.554032 ACCAGCCTCAGAAATTCAAACG 59.446 45.455 0.00 0.00 0.00 3.60
5198 5246 3.569701 TGACCAGCCTCAGAAATTCAAAC 59.430 43.478 0.00 0.00 0.00 2.93
5199 5247 3.831323 TGACCAGCCTCAGAAATTCAAA 58.169 40.909 0.00 0.00 0.00 2.69
5200 5248 3.507162 TGACCAGCCTCAGAAATTCAA 57.493 42.857 0.00 0.00 0.00 2.69
5201 5249 3.726557 ATGACCAGCCTCAGAAATTCA 57.273 42.857 0.00 0.00 0.00 2.57
5202 5250 4.574013 CACTATGACCAGCCTCAGAAATTC 59.426 45.833 0.00 0.00 0.00 2.17
5203 5251 4.521146 CACTATGACCAGCCTCAGAAATT 58.479 43.478 0.00 0.00 0.00 1.82
5204 5252 3.118112 CCACTATGACCAGCCTCAGAAAT 60.118 47.826 0.00 0.00 0.00 2.17
5205 5253 2.237143 CCACTATGACCAGCCTCAGAAA 59.763 50.000 0.00 0.00 0.00 2.52
5206 5254 1.833630 CCACTATGACCAGCCTCAGAA 59.166 52.381 0.00 0.00 0.00 3.02
5207 5255 1.489481 CCACTATGACCAGCCTCAGA 58.511 55.000 0.00 0.00 0.00 3.27
5208 5256 0.467384 CCCACTATGACCAGCCTCAG 59.533 60.000 0.00 0.00 0.00 3.35
5209 5257 0.982852 CCCCACTATGACCAGCCTCA 60.983 60.000 0.00 0.00 0.00 3.86
5210 5258 0.691078 TCCCCACTATGACCAGCCTC 60.691 60.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.