AutoCloner

Multiple sequence alignment - TraesCS3A01G210900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G210900	chr3A	100.000	2255	0	0	1	2255	377684326	377682072	0.000000e+00	4165.0
1	TraesCS3A01G210900	chr7A	94.219	1574	73	5	1	1560	512895450	512893881	0.000000e+00	2386.0
2	TraesCS3A01G210900	chr7A	84.481	1031	125	19	3	1007	422569905	422568884	0.000000e+00	985.0
3	TraesCS3A01G210900	chr7A	91.519	566	25	8	1614	2176	512893586	512893041	0.000000e+00	758.0
4	TraesCS3A01G210900	chr7A	85.263	95	12	2	2078	2171	594425606	594425699	1.840000e-16	97.1
5	TraesCS3A01G210900	chr7A	84.314	102	11	5	2053	2150	238528163	238528263	6.630000e-16	95.3
6	TraesCS3A01G210900	chr2D	86.686	1059	67	24	2	1007	462976457	462975420	0.000000e+00	1107.0
7	TraesCS3A01G210900	chr2D	87.192	406	41	6	1388	1782	462975414	462975009	3.420000e-123	451.0
8	TraesCS3A01G210900	chr2D	87.172	343	33	7	1826	2159	462975010	462974670	1.630000e-101	379.0
9	TraesCS3A01G210900	chr2D	86.842	76	6	4	2141	2214	169935042	169934969	5.160000e-12	82.4
10	TraesCS3A01G210900	chr7D	85.063	1031	119	23	3	1007	397491142	397492163	0.000000e+00	1018.0
11	TraesCS3A01G210900	chr7D	84.436	1028	121	27	3	1007	554797804	554798815	0.000000e+00	976.0
12	TraesCS3A01G210900	chr7D	87.059	85	9	2	2071	2153	343899432	343899516	6.630000e-16	95.3
13	TraesCS3A01G210900	chr7D	86.250	80	7	4	2138	2214	244986572	244986650	1.440000e-12	84.2
14	TraesCS3A01G210900	chr5D	86.564	841	95	9	180	1007	430330925	430331760	0.000000e+00	911.0
15	TraesCS3A01G210900	chr5B	86.396	838	99	9	180	1007	160518097	160518929	0.000000e+00	902.0
16	TraesCS3A01G210900	chr5B	97.183	71	2	0	3	73	160517903	160517973	1.090000e-23	121.0
17	TraesCS3A01G210900	chr4A	82.071	1043	130	26	5	1003	478991743	478992772	0.000000e+00	837.0
18	TraesCS3A01G210900	chr4A	84.783	92	14	0	2079	2170	15611267	15611358	2.380000e-15	93.5
19	TraesCS3A01G210900	chr6A	84.571	862	103	24	3	844	435725671	435726522	0.000000e+00	828.0
20	TraesCS3A01G210900	chr6A	91.632	239	20	0	1013	1251	594515541	594515303	4.640000e-87	331.0
21	TraesCS3A01G210900	chr6A	86.000	100	12	2	2078	2176	110220076	110219978	3.060000e-19	106.0
22	TraesCS3A01G210900	chr6A	96.000	50	2	0	1296	1345	594515305	594515256	5.160000e-12	82.4
23	TraesCS3A01G210900	chr4B	83.333	726	84	23	3	703	463351077	463350364	8.780000e-179	636.0
24	TraesCS3A01G210900	chr4B	83.262	705	85	19	3	686	454872421	454871729	3.180000e-173	617.0
25	TraesCS3A01G210900	chr4B	84.466	309	36	5	705	1007	463345003	463344701	6.090000e-76	294.0
26	TraesCS3A01G210900	chr4B	91.026	78	6	1	2100	2176	587554928	587555005	1.100000e-18	104.0
27	TraesCS3A01G210900	chr6D	78.947	209	27	7	727	919	171060749	171060956	2.350000e-25	126.0
28	TraesCS3A01G210900	chr6D	87.179	78	7	3	2138	2213	79437649	79437725	3.990000e-13	86.1
29	TraesCS3A01G210900	chr6B	78.774	212	28	8	727	922	308915286	308915076	2.350000e-25	126.0
30	TraesCS3A01G210900	chr6B	77.165	127	29	0	1014	1140	12855507	12855381	8.640000e-10	75.0
31	TraesCS3A01G210900	chr7B	86.170	94	12	1	2073	2165	445527705	445527798	1.430000e-17	100.0
32	TraesCS3A01G210900	chr1A	87.013	77	6	4	2141	2214	291271713	291271638	1.440000e-12	84.2
33	TraesCS3A01G210900	chr4D	85.542	83	7	5	2141	2220	310034792	310034712	5.160000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G210900	chr3A	377682072	377684326	2254	True	4165.000000	4165	100.000000	1	2255	1	chr3A.!!$R1	2254
1	TraesCS3A01G210900	chr7A	512893041	512895450	2409	True	1572.000000	2386	92.869000	1	2176	2	chr7A.!!$R2	2175
2	TraesCS3A01G210900	chr7A	422568884	422569905	1021	True	985.000000	985	84.481000	3	1007	1	chr7A.!!$R1	1004
3	TraesCS3A01G210900	chr2D	462974670	462976457	1787	True	645.666667	1107	87.016667	2	2159	3	chr2D.!!$R2	2157
4	TraesCS3A01G210900	chr7D	397491142	397492163	1021	False	1018.000000	1018	85.063000	3	1007	1	chr7D.!!$F3	1004
5	TraesCS3A01G210900	chr7D	554797804	554798815	1011	False	976.000000	976	84.436000	3	1007	1	chr7D.!!$F4	1004
6	TraesCS3A01G210900	chr5D	430330925	430331760	835	False	911.000000	911	86.564000	180	1007	1	chr5D.!!$F1	827
7	TraesCS3A01G210900	chr5B	160517903	160518929	1026	False	511.500000	902	91.789500	3	1007	2	chr5B.!!$F1	1004
8	TraesCS3A01G210900	chr4A	478991743	478992772	1029	False	837.000000	837	82.071000	5	1003	1	chr4A.!!$F2	998
9	TraesCS3A01G210900	chr6A	435725671	435726522	851	False	828.000000	828	84.571000	3	844	1	chr6A.!!$F1	841
10	TraesCS3A01G210900	chr4B	463350364	463351077	713	True	636.000000	636	83.333000	3	703	1	chr4B.!!$R3	700
11	TraesCS3A01G210900	chr4B	454871729	454872421	692	True	617.000000	617	83.262000	3	686	1	chr4B.!!$R1	683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
336	423	1.958288	ACAAGTATGAGGGCTGGACT	58.042	50.0	0.0	0.0	0.0	3.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1839	2195	0.108186	CCATGCTACTGCCGAACTCA	60.108	55.0	0.0	0.0	38.71	3.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
150	173	5.600069	GGGGATTATTCTGAAGCTTTTGGAT	59.400	40.000	0.00	0.00	0.00	3.41
175	208	5.455525	GGAGTCAAACAAAACTGATTTCACG	59.544	40.000	0.00	0.00	0.00	4.35
336	423	1.958288	ACAAGTATGAGGGCTGGACT	58.042	50.000	0.00	0.00	0.00	3.85
398	485	7.086685	TGGGTAAGAAGGGATACATAATTCC	57.913	40.000	0.00	0.00	39.74	3.01
543	631	3.364621	CAGCAAACGAAAACCATACATGC	59.635	43.478	0.00	0.00	0.00	4.06
734	822	3.997021	CACCTCGAAGAAAAGTGCATAGT	59.003	43.478	0.00	0.00	34.09	2.12
755	843	2.615447	TCGTAGTAGGACTTGGCGTATG	59.385	50.000	0.00	0.00	0.00	2.39
776	864	3.249799	TGGTTGTTGTAGAACTTCATGCG	59.750	43.478	4.21	0.00	32.79	4.73
814	903	5.900123	TCTCAATGGTTGTAAAAGGGGAAAA	59.100	36.000	0.00	0.00	0.00	2.29
823	912	7.602644	GGTTGTAAAAGGGGAAAATGAGAATTC	59.397	37.037	0.00	0.00	0.00	2.17
994	1109	4.038883	AGCTAAACAGAGACAACCGTAGTT	59.961	41.667	0.00	0.00	36.33	2.24
1018	1133	4.500375	GCTAGATGTCATTTGAAATGGGGC	60.500	45.833	17.01	8.96	0.00	5.80
1045	1160	0.376502	GCTGATTTGCGAGGAGAAGC	59.623	55.000	0.00	0.00	0.00	3.86
1053	1168	0.662970	GCGAGGAGAAGCTATGCGAG	60.663	60.000	0.00	0.00	0.00	5.03
1063	1178	2.031870	AGCTATGCGAGTACATCCACA	58.968	47.619	0.00	0.00	0.00	4.17
1084	1199	4.398598	GCACGGCGGCGAACATTT	62.399	61.111	38.93	11.83	0.00	2.32
1092	1207	1.003262	CGGCGAACATTTTGGCACTG	61.003	55.000	0.00	0.00	38.15	3.66
1119	1234	1.127567	AACACTGCTGTGAGGGCCTA	61.128	55.000	27.99	0.00	46.55	3.93
1163	1278	2.884012	TCGCTGCTCCAGAAAATTTGAA	59.116	40.909	0.00	0.00	32.44	2.69
1205	1320	0.108472	TTCCAGCATCTGAGCGTGAG	60.108	55.000	0.00	0.00	40.15	3.51
1206	1321	1.217511	CCAGCATCTGAGCGTGAGT	59.782	57.895	0.00	0.00	40.15	3.41
1208	1323	0.720027	CAGCATCTGAGCGTGAGTTG	59.280	55.000	0.00	0.00	40.15	3.16
1224	1339	3.055094	TGAGTTGCCCTTCTCTTATGGTC	60.055	47.826	0.00	0.00	0.00	4.02
1231	1346	2.287308	CCTTCTCTTATGGTCGAGCTCG	60.287	54.545	30.03	30.03	41.45	5.03
1257	1372	0.676466	TGTTCCCCGTGCATTAGCTG	60.676	55.000	0.00	0.00	42.74	4.24
1287	1402	6.582636	TGGATGATACTTATCAGTGTTCCAC	58.417	40.000	12.40	0.00	45.01	4.02
1299	1414	3.467803	AGTGTTCCACTGTTCTAGCAAC	58.532	45.455	0.00	0.00	43.63	4.17
1300	1415	3.118408	AGTGTTCCACTGTTCTAGCAACA	60.118	43.478	0.00	7.31	43.63	3.33
1354	1469	3.119245	TCAGGTAGCCGTCTTTGTGTATC	60.119	47.826	0.00	0.00	0.00	2.24
1386	1501	3.650139	TCTGAGTTAACAACCGAGAAGC	58.350	45.455	8.61	0.00	0.00	3.86
1499	1614	3.934391	GACGTGCGGGGAAGGTCAG	62.934	68.421	0.00	0.00	33.65	3.51
1561	1676	2.047274	GCTCACCGTGGCTGCTTA	60.047	61.111	0.00	0.00	0.00	3.09
1569	1684	1.019278	CGTGGCTGCTTACGGTGATT	61.019	55.000	17.65	0.00	36.71	2.57
1570	1685	0.727398	GTGGCTGCTTACGGTGATTC	59.273	55.000	0.00	0.00	0.00	2.52
1571	1686	0.739462	TGGCTGCTTACGGTGATTCG	60.739	55.000	0.00	0.00	0.00	3.34
1579	1694	1.108776	TACGGTGATTCGGGAAGAGG	58.891	55.000	0.00	0.00	0.00	3.69
1686	2042	1.471119	GACGGTGTACAGGGAGATGA	58.529	55.000	0.00	0.00	0.00	2.92
1888	2244	4.025401	CGCGAGTTGTTGGTGGCC	62.025	66.667	0.00	0.00	0.00	5.36
1940	2296	4.722700	CGGCCCTGGTTCCTGGTG	62.723	72.222	12.54	6.49	0.00	4.17
1941	2297	3.580319	GGCCCTGGTTCCTGGTGT	61.580	66.667	12.54	0.00	0.00	4.16
1942	2298	2.282462	GCCCTGGTTCCTGGTGTG	60.282	66.667	12.54	0.96	0.00	3.82
1943	2299	2.436109	CCCTGGTTCCTGGTGTGG	59.564	66.667	12.54	0.00	0.00	4.17
1944	2300	2.282462	CCTGGTTCCTGGTGTGGC	60.282	66.667	6.60	0.00	0.00	5.01
1945	2301	2.282462	CTGGTTCCTGGTGTGGCC	60.282	66.667	0.00	0.00	37.90	5.36
1946	2302	4.263572	TGGTTCCTGGTGTGGCCG	62.264	66.667	0.00	0.00	41.21	6.13
1948	2304	4.947147	GTTCCTGGTGTGGCCGCA	62.947	66.667	16.89	16.89	41.21	5.69
1949	2305	4.641645	TTCCTGGTGTGGCCGCAG	62.642	66.667	21.93	8.23	41.21	5.18
2052	2431	4.815973	TGGGAGATGGGGGACGGG	62.816	72.222	0.00	0.00	0.00	5.28
2091	2471	1.278127	GTTGGGAGTTCGGGAGATTCA	59.722	52.381	0.00	0.00	39.57	2.57
2102	2482	2.507102	AGATTCACGTCGCGCCTG	60.507	61.111	0.00	0.00	0.00	4.85
2212	2593	4.982241	CCTCTAGGGCATATTTCCTTCA	57.018	45.455	0.00	0.00	34.75	3.02
2213	2594	4.904241	CCTCTAGGGCATATTTCCTTCAG	58.096	47.826	0.00	0.00	34.75	3.02
2214	2595	4.263243	CCTCTAGGGCATATTTCCTTCAGG	60.263	50.000	0.00	2.64	34.75	3.86
2215	2596	4.566837	TCTAGGGCATATTTCCTTCAGGA	58.433	43.478	0.00	0.00	43.73	3.86
2216	2597	5.165652	TCTAGGGCATATTTCCTTCAGGAT	58.834	41.667	0.00	0.00	44.98	3.24
2217	2598	4.821532	AGGGCATATTTCCTTCAGGATT	57.178	40.909	0.00	0.00	44.98	3.01
2218	2599	4.734266	AGGGCATATTTCCTTCAGGATTC	58.266	43.478	0.00	0.00	44.98	2.52
2219	2600	4.168675	AGGGCATATTTCCTTCAGGATTCA	59.831	41.667	0.00	0.00	44.98	2.57
2220	2601	4.522022	GGGCATATTTCCTTCAGGATTCAG	59.478	45.833	0.00	0.00	44.98	3.02
2221	2602	4.522022	GGCATATTTCCTTCAGGATTCAGG	59.478	45.833	0.00	0.00	44.98	3.86
2222	2603	5.380043	GCATATTTCCTTCAGGATTCAGGA	58.620	41.667	0.00	0.00	44.98	3.86
2223	2604	5.472820	GCATATTTCCTTCAGGATTCAGGAG	59.527	44.000	0.00	0.00	44.98	3.69
2224	2605	3.356529	TTTCCTTCAGGATTCAGGAGC	57.643	47.619	0.00	0.00	44.98	4.70
2225	2606	2.260639	TCCTTCAGGATTCAGGAGCT	57.739	50.000	0.00	0.00	39.78	4.09
2226	2607	1.836166	TCCTTCAGGATTCAGGAGCTG	59.164	52.381	0.00	0.00	39.78	4.24
2227	2608	1.558756	CCTTCAGGATTCAGGAGCTGT	59.441	52.381	0.00	0.00	37.39	4.40
2228	2609	2.419851	CCTTCAGGATTCAGGAGCTGTC	60.420	54.545	0.00	0.00	37.39	3.51
2229	2610	1.198713	TCAGGATTCAGGAGCTGTCC	58.801	55.000	0.00	0.00	44.33	4.02
2238	2619	2.113767	GGAGCTGTCCGGTAGTACC	58.886	63.158	9.50	9.50	31.37	3.34
2239	2620	0.395448	GGAGCTGTCCGGTAGTACCT	60.395	60.000	17.29	0.00	35.66	3.08
2240	2621	0.739561	GAGCTGTCCGGTAGTACCTG	59.260	60.000	17.29	10.98	35.66	4.00
2241	2622	1.141234	GCTGTCCGGTAGTACCTGC	59.859	63.158	17.29	9.42	35.66	4.85
2242	2623	1.601419	GCTGTCCGGTAGTACCTGCA	61.601	60.000	17.29	11.45	35.66	4.41
2243	2624	1.112113	CTGTCCGGTAGTACCTGCAT	58.888	55.000	17.29	0.00	35.66	3.96
2244	2625	2.304092	CTGTCCGGTAGTACCTGCATA	58.696	52.381	17.29	0.00	35.66	3.14
2245	2626	2.891580	CTGTCCGGTAGTACCTGCATAT	59.108	50.000	17.29	0.00	35.66	1.78
2246	2627	3.302161	TGTCCGGTAGTACCTGCATATT	58.698	45.455	17.29	0.00	35.66	1.28
2247	2628	3.707611	TGTCCGGTAGTACCTGCATATTT	59.292	43.478	17.29	0.00	35.66	1.40
2248	2629	4.894705	TGTCCGGTAGTACCTGCATATTTA	59.105	41.667	17.29	0.00	35.66	1.40
2249	2630	5.541101	TGTCCGGTAGTACCTGCATATTTAT	59.459	40.000	17.29	0.00	35.66	1.40
2250	2631	6.098017	GTCCGGTAGTACCTGCATATTTATC	58.902	44.000	17.29	0.00	35.66	1.75
2251	2632	5.186409	TCCGGTAGTACCTGCATATTTATCC	59.814	44.000	17.29	0.00	35.66	2.59
2252	2633	5.046878	CCGGTAGTACCTGCATATTTATCCA	60.047	44.000	17.29	0.00	35.66	3.41
2253	2634	6.100004	CGGTAGTACCTGCATATTTATCCAG	58.900	44.000	17.29	0.00	35.66	3.86
2254	2635	6.071560	CGGTAGTACCTGCATATTTATCCAGA	60.072	42.308	17.29	0.00	35.66	3.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
150	173	6.329496	GTGAAATCAGTTTTGTTTGACTCCA	58.671	36.000	0.00	0.00	0.00	3.86
175	208	6.702282	GGTGTTCTGCTCTCTATATTTGTACC	59.298	42.308	0.00	0.00	0.00	3.34
259	327	6.293190	CGTTTACTCACTCCTAAAAATGTGCA	60.293	38.462	0.00	0.00	0.00	4.57
336	423	6.491714	TTCCCAAACCTGAATTTTTGATCA	57.508	33.333	0.00	0.00	35.13	2.92
734	822	2.401583	TACGCCAAGTCCTACTACGA	57.598	50.000	0.00	0.00	0.00	3.43
755	843	3.496884	TCGCATGAAGTTCTACAACAACC	59.503	43.478	4.17	0.00	34.60	3.77
776	864	3.862267	CCATTGAGATGTTCAGAGACGTC	59.138	47.826	7.70	7.70	37.07	4.34
823	912	7.552687	TGCAGGGTGTATCTAATTTACTGAAAG	59.447	37.037	0.00	0.00	42.29	2.62
839	928	2.719531	TGACAAAACTGCAGGGTGTA	57.280	45.000	19.93	5.47	0.00	2.90
883	995	4.099113	TGGATGTGTTGCTCATGTGAAAAA	59.901	37.500	0.00	0.00	0.00	1.94
994	1109	4.646040	CCCCATTTCAAATGACATCTAGCA	59.354	41.667	11.98	0.00	0.00	3.49
998	1113	2.428171	CGCCCCATTTCAAATGACATCT	59.572	45.455	11.98	0.00	0.00	2.90
1018	1133	1.226211	CGCAAATCAGCTTCAGCCG	60.226	57.895	0.00	0.00	43.38	5.52
1045	1160	3.237628	CGATGTGGATGTACTCGCATAG	58.762	50.000	9.30	6.93	0.00	2.23
1053	1168	1.151777	CCGTGCCGATGTGGATGTAC	61.152	60.000	0.00	0.00	42.00	2.90
1083	1198	1.153066	TTGCTCGACCAGTGCCAAA	60.153	52.632	0.00	0.00	38.49	3.28
1084	1199	1.891919	GTTGCTCGACCAGTGCCAA	60.892	57.895	0.00	0.00	38.49	4.52
1119	1234	4.525912	AAAATCGAAGCATGCCTTCTTT	57.474	36.364	15.66	11.40	46.29	2.52
1143	1258	2.995466	TCAAATTTTCTGGAGCAGCG	57.005	45.000	0.00	0.00	0.00	5.18
1152	1267	1.068541	GCGACGGCCTTCAAATTTTCT	60.069	47.619	10.24	0.00	0.00	2.52
1163	1278	4.057428	GAGTGACTGCGACGGCCT	62.057	66.667	0.00	0.00	38.85	5.19
1205	1320	2.093658	TCGACCATAAGAGAAGGGCAAC	60.094	50.000	0.00	0.00	0.00	4.17
1206	1321	2.168521	CTCGACCATAAGAGAAGGGCAA	59.831	50.000	0.00	0.00	36.65	4.52
1208	1323	1.539280	GCTCGACCATAAGAGAAGGGC	60.539	57.143	0.00	0.00	36.65	5.19
1224	1339	2.434884	AACATGGCCACGAGCTCG	60.435	61.111	33.45	33.45	43.05	5.03
1231	1346	3.061848	CACGGGGAACATGGCCAC	61.062	66.667	8.16	0.00	0.00	5.01
1257	1372	7.665690	ACACTGATAAGTATCATCCATCACTC	58.334	38.462	1.56	0.00	41.46	3.51
1299	1414	8.824781	CATTAGTCTAGAAACCATGATTCACTG	58.175	37.037	12.02	4.08	0.00	3.66
1300	1415	8.543774	ACATTAGTCTAGAAACCATGATTCACT	58.456	33.333	12.02	9.48	0.00	3.41
1354	1469	4.363138	TGTTAACTCAGATAGATGCAGCG	58.637	43.478	7.22	0.00	0.00	5.18
1386	1501	4.183865	TGAAAATCCTCTCACGTATGCAG	58.816	43.478	0.00	0.00	0.00	4.41
1499	1614	1.036707	CCTTCCCCGTCATCTCTCTC	58.963	60.000	0.00	0.00	0.00	3.20
1561	1676	1.898154	CCTCTTCCCGAATCACCGT	59.102	57.895	0.00	0.00	0.00	4.83
1597	1716	2.103263	GTCCACTACATGTCCATCTCCC	59.897	54.545	0.00	0.00	0.00	4.30
1839	2195	0.108186	CCATGCTACTGCCGAACTCA	60.108	55.000	0.00	0.00	38.71	3.41
2059	2438	0.828022	CTCCCAACCGGTGCATACTA	59.172	55.000	8.52	0.00	0.00	1.82
2091	2471	2.719979	CCTATACAGGCGCGACGT	59.280	61.111	12.10	13.03	34.35	4.34
2102	2482	9.142014	ACTATTCTGATCATAGCATCCCTATAC	57.858	37.037	0.00	0.00	34.98	1.47
2191	2572	4.263243	CCTGAAGGAAATATGCCCTAGAGG	60.263	50.000	0.00	0.00	37.39	3.69
2192	2573	4.594920	TCCTGAAGGAAATATGCCCTAGAG	59.405	45.833	0.00	0.00	42.18	2.43
2193	2574	4.566837	TCCTGAAGGAAATATGCCCTAGA	58.433	43.478	0.00	0.00	42.18	2.43
2194	2575	4.982241	TCCTGAAGGAAATATGCCCTAG	57.018	45.455	0.00	0.00	42.18	3.02
2200	2581	8.650441	CAGCTCCTGAATCCTGAAGGAAATATG	61.650	44.444	2.51	0.00	39.85	1.78
2201	2582	6.690975	CAGCTCCTGAATCCTGAAGGAAATAT	60.691	42.308	2.51	0.00	39.85	1.28
2202	2583	5.397221	CAGCTCCTGAATCCTGAAGGAAATA	60.397	44.000	2.51	0.00	39.85	1.40
2203	2584	4.628227	CAGCTCCTGAATCCTGAAGGAAAT	60.628	45.833	2.51	0.00	39.85	2.17
2204	2585	3.307975	CAGCTCCTGAATCCTGAAGGAAA	60.308	47.826	2.51	0.00	39.85	3.13
2205	2586	2.238144	CAGCTCCTGAATCCTGAAGGAA	59.762	50.000	2.51	0.00	39.85	3.36
2206	2587	1.836166	CAGCTCCTGAATCCTGAAGGA	59.164	52.381	0.51	0.51	40.39	3.36
2207	2588	1.558756	ACAGCTCCTGAATCCTGAAGG	59.441	52.381	0.00	0.00	35.18	3.46
2208	2589	2.419851	GGACAGCTCCTGAATCCTGAAG	60.420	54.545	0.00	0.00	35.18	3.02
2209	2590	1.556911	GGACAGCTCCTGAATCCTGAA	59.443	52.381	0.00	0.00	35.18	3.02
2210	2591	1.198713	GGACAGCTCCTGAATCCTGA	58.801	55.000	0.00	0.00	35.18	3.86
2211	2592	0.179089	CGGACAGCTCCTGAATCCTG	60.179	60.000	0.00	0.00	35.18	3.86
2212	2593	1.333636	CCGGACAGCTCCTGAATCCT	61.334	60.000	0.00	0.00	35.18	3.24
2213	2594	1.144936	CCGGACAGCTCCTGAATCC	59.855	63.158	0.00	0.00	35.18	3.01
2214	2595	1.067821	CTACCGGACAGCTCCTGAATC	59.932	57.143	9.46	0.00	35.18	2.52
2215	2596	1.115467	CTACCGGACAGCTCCTGAAT	58.885	55.000	9.46	0.00	35.18	2.57
2216	2597	0.251653	ACTACCGGACAGCTCCTGAA	60.252	55.000	9.46	0.00	35.18	3.02
2217	2598	0.622136	TACTACCGGACAGCTCCTGA	59.378	55.000	9.46	0.00	35.18	3.86
2218	2599	0.739561	GTACTACCGGACAGCTCCTG	59.260	60.000	9.46	0.00	37.52	3.86
2219	2600	0.395448	GGTACTACCGGACAGCTCCT	60.395	60.000	9.46	0.00	33.79	3.69
2220	2601	0.395448	AGGTACTACCGGACAGCTCC	60.395	60.000	9.46	10.62	44.90	4.70
2221	2602	0.739561	CAGGTACTACCGGACAGCTC	59.260	60.000	9.46	1.58	44.90	4.09
2222	2603	1.321074	GCAGGTACTACCGGACAGCT	61.321	60.000	9.46	1.45	44.90	4.24
2223	2604	1.141234	GCAGGTACTACCGGACAGC	59.859	63.158	9.46	0.00	44.90	4.40
2224	2605	1.112113	ATGCAGGTACTACCGGACAG	58.888	55.000	9.46	7.46	44.90	3.51
2225	2606	2.440517	TATGCAGGTACTACCGGACA	57.559	50.000	9.46	7.13	44.90	4.02
2226	2607	4.332428	AAATATGCAGGTACTACCGGAC	57.668	45.455	9.46	0.00	44.90	4.79
2227	2608	5.186409	GGATAAATATGCAGGTACTACCGGA	59.814	44.000	9.46	2.29	44.90	5.14
2228	2609	5.046878	TGGATAAATATGCAGGTACTACCGG	60.047	44.000	0.00	0.00	44.90	5.28
2229	2610	6.032956	TGGATAAATATGCAGGTACTACCG	57.967	41.667	0.00	0.00	44.90	4.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.