Multiple sequence alignment - TraesCS3A01G210700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G210700 chr3A 100.000 7502 0 0 1 7502 377149635 377142134 0.000000e+00 13854.0
1 TraesCS3A01G210700 chr3A 93.548 465 29 1 1600 2064 377147572 377147109 0.000000e+00 691.0
2 TraesCS3A01G210700 chr3A 93.548 465 29 1 2064 2527 377148036 377147572 0.000000e+00 691.0
3 TraesCS3A01G210700 chr3A 83.871 93 7 4 4870 4962 78187950 78188034 1.730000e-11 82.4
4 TraesCS3A01G210700 chr3A 91.379 58 3 2 4872 4928 710277821 710277877 2.240000e-10 78.7
5 TraesCS3A01G210700 chr3A 88.710 62 7 0 4905 4966 528595204 528595265 8.070000e-10 76.8
6 TraesCS3A01G210700 chr3D 96.066 5414 134 35 1866 7209 287481564 287476160 0.000000e+00 8745.0
7 TraesCS3A01G210700 chr3D 95.805 1788 69 3 208 1990 287483349 287481563 0.000000e+00 2881.0
8 TraesCS3A01G210700 chr3D 93.548 465 29 1 1600 2064 287481367 287480904 0.000000e+00 691.0
9 TraesCS3A01G210700 chr3D 93.401 394 25 1 2064 2456 287481953 287481560 3.900000e-162 582.0
10 TraesCS3A01G210700 chr3D 92.386 197 13 2 2332 2527 287481562 287481367 5.730000e-71 279.0
11 TraesCS3A01G210700 chr3B 93.543 1874 63 33 3124 4972 380682146 380680306 0.000000e+00 2737.0
12 TraesCS3A01G210700 chr3B 97.043 1623 33 10 5616 7232 380679464 380677851 0.000000e+00 2717.0
13 TraesCS3A01G210700 chr3B 96.316 1330 44 2 474 1803 380685260 380683936 0.000000e+00 2180.0
14 TraesCS3A01G210700 chr3B 98.141 753 14 0 1802 2554 380683854 380683102 0.000000e+00 1314.0
15 TraesCS3A01G210700 chr3B 98.611 648 9 0 4970 5617 380680193 380679546 0.000000e+00 1147.0
16 TraesCS3A01G210700 chr3B 92.979 527 11 8 2497 3014 380683102 380682593 0.000000e+00 745.0
17 TraesCS3A01G210700 chr3B 92.903 465 32 1 1600 2064 380683592 380683129 0.000000e+00 675.0
18 TraesCS3A01G210700 chr3B 94.297 263 14 1 2266 2527 380683854 380683592 1.170000e-107 401.0
19 TraesCS3A01G210700 chr3B 91.667 204 15 2 2064 2267 380684137 380683936 1.590000e-71 281.0
20 TraesCS3A01G210700 chr3B 91.803 183 14 1 7228 7410 380673957 380673776 3.470000e-63 254.0
21 TraesCS3A01G210700 chr3B 98.413 63 1 0 2997 3059 380682195 380682133 2.210000e-20 111.0
22 TraesCS3A01G210700 chr3B 92.982 57 4 0 472 528 72463364 72463420 4.820000e-12 84.2
23 TraesCS3A01G210700 chr2D 94.686 207 11 0 3 209 470827755 470827961 9.390000e-84 322.0
24 TraesCS3A01G210700 chr5A 95.429 175 8 0 1 175 659352828 659352654 5.730000e-71 279.0
25 TraesCS3A01G210700 chr5A 84.758 269 32 6 3379 3641 669740571 669740306 2.080000e-65 261.0
26 TraesCS3A01G210700 chr5A 94.444 54 3 0 472 525 689913318 689913265 4.820000e-12 84.2
27 TraesCS3A01G210700 chr5A 91.837 49 4 0 168 216 659352458 659352410 1.350000e-07 69.4
28 TraesCS3A01G210700 chr5A 91.304 46 1 2 3214 3258 606178404 606178361 8.130000e-05 60.2
29 TraesCS3A01G210700 chr5A 91.304 46 1 2 3214 3258 606486034 606485991 8.130000e-05 60.2
30 TraesCS3A01G210700 chr1B 89.720 214 22 0 3 216 292197779 292197992 2.670000e-69 274.0
31 TraesCS3A01G210700 chr1B 84.810 79 7 4 3100 3174 344044762 344044839 2.900000e-09 75.0
32 TraesCS3A01G210700 chr7A 84.791 263 32 5 3379 3635 663962750 663963010 2.690000e-64 257.0
33 TraesCS3A01G210700 chr7A 83.544 79 10 3 3104 3181 28447079 28447155 3.760000e-08 71.3
34 TraesCS3A01G210700 chr7A 91.304 46 1 2 3214 3258 507687748 507687705 8.130000e-05 60.2
35 TraesCS3A01G210700 chr7A 91.304 46 1 2 3214 3258 640542812 640542769 8.130000e-05 60.2
36 TraesCS3A01G210700 chr7A 91.304 46 1 2 3214 3258 682200359 682200402 8.130000e-05 60.2
37 TraesCS3A01G210700 chr6B 90.805 87 7 1 4876 4962 665702255 665702340 1.710000e-21 115.0
38 TraesCS3A01G210700 chr6B 86.275 102 9 5 4867 4965 43502576 43502477 1.030000e-18 106.0
39 TraesCS3A01G210700 chr6B 88.406 69 3 4 3105 3173 503545254 503545317 2.240000e-10 78.7
40 TraesCS3A01G210700 chr4A 87.778 90 11 0 4873 4962 544057444 544057355 1.030000e-18 106.0
41 TraesCS3A01G210700 chr1A 88.764 89 7 1 4877 4962 259202068 259202156 1.030000e-18 106.0
42 TraesCS3A01G210700 chr5D 87.234 94 4 3 4877 4962 566045089 566044996 4.790000e-17 100.0
43 TraesCS3A01G210700 chr2A 86.747 83 5 5 3102 3182 73540656 73540734 3.730000e-13 87.9
44 TraesCS3A01G210700 chr2A 89.552 67 3 4 3099 3163 745094750 745094686 1.730000e-11 82.4
45 TraesCS3A01G210700 chr2A 91.304 46 1 2 3214 3258 750326213 750326170 8.130000e-05 60.2
46 TraesCS3A01G210700 chr7D 83.696 92 11 1 4877 4964 107266153 107266062 4.820000e-12 84.2
47 TraesCS3A01G210700 chr4D 88.235 68 5 3 3106 3173 504343828 504343764 2.240000e-10 78.7
48 TraesCS3A01G210700 chr4D 88.235 68 5 3 3106 3173 505192383 505192447 2.240000e-10 78.7
49 TraesCS3A01G210700 chr4D 100.000 31 0 0 311 341 501675974 501675944 2.920000e-04 58.4
50 TraesCS3A01G210700 chr6D 100.000 28 0 0 180 207 297520877 297520850 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G210700 chr3A 377142134 377149635 7501 True 5078.666667 13854 95.698667 1 7502 3 chr3A.!!$R1 7501
1 TraesCS3A01G210700 chr3D 287476160 287483349 7189 True 2635.600000 8745 94.241200 208 7209 5 chr3D.!!$R1 7001
2 TraesCS3A01G210700 chr3B 380673776 380685260 11484 True 1142.000000 2737 95.065091 474 7410 11 chr3B.!!$R1 6936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.108992 TGTCGTTCGCTGTGGGTATC 60.109 55.000 0.00 0.0 0.0 2.24 F
1501 1507 0.111639 GTTGGTATGGTGTGGGGTGT 59.888 55.000 0.00 0.0 0.0 4.16 F
1716 1722 0.589223 TGTCAAAAATCCCACGTCGC 59.411 50.000 0.00 0.0 0.0 5.19 F
3494 4198 0.596082 CGGCGTTTGGAAGTTGGAAT 59.404 50.000 0.00 0.0 0.0 3.01 F
4623 5347 0.676782 CCCGCGGAAGTTTGGAGAAT 60.677 55.000 30.73 0.0 0.0 2.40 F
5107 5963 3.391506 AAAGGCCTTGCATTTCTTCAC 57.608 42.857 21.33 0.0 38.1 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 1905 0.178973 AACCCCACAAGTGTAAGCCC 60.179 55.000 0.00 0.0 0.00 5.19 R
3085 3779 0.614415 CTATTTTGCACTGGCCCCCA 60.614 55.000 0.00 0.0 40.13 4.96 R
3640 4344 2.019156 GCCTCTAGCTCCCGCAAAATT 61.019 52.381 0.00 0.0 39.10 1.82 R
5107 5963 0.801251 CTGGCCTTTCAGCTTCTTCG 59.199 55.000 3.32 0.0 0.00 3.79 R
5638 6577 0.108585 ACTCCACACACACACCATCC 59.891 55.000 0.00 0.0 0.00 3.51 R
6815 7756 0.826715 ACGAGAGCCATACATGCACT 59.173 50.000 0.00 0.0 32.16 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.821935 CCCCCTTGTCTTGACACC 57.178 61.111 2.62 0.00 0.00 4.16
30 31 1.843421 CCCCCTTGTCTTGACACCA 59.157 57.895 2.62 0.00 0.00 4.17
31 32 0.405585 CCCCCTTGTCTTGACACCAT 59.594 55.000 2.62 0.00 0.00 3.55
32 33 1.538047 CCCCTTGTCTTGACACCATG 58.462 55.000 2.62 0.00 0.00 3.66
33 34 0.883833 CCCTTGTCTTGACACCATGC 59.116 55.000 2.62 0.00 0.00 4.06
34 35 1.608055 CCTTGTCTTGACACCATGCA 58.392 50.000 2.62 0.00 0.00 3.96
35 36 1.538512 CCTTGTCTTGACACCATGCAG 59.461 52.381 2.62 0.00 0.00 4.41
36 37 0.953727 TTGTCTTGACACCATGCAGC 59.046 50.000 2.62 0.00 0.00 5.25
37 38 1.229975 TGTCTTGACACCATGCAGCG 61.230 55.000 0.00 0.00 0.00 5.18
38 39 0.950555 GTCTTGACACCATGCAGCGA 60.951 55.000 0.00 0.00 0.00 4.93
39 40 0.671472 TCTTGACACCATGCAGCGAG 60.671 55.000 0.00 0.00 0.00 5.03
40 41 1.642037 CTTGACACCATGCAGCGAGG 61.642 60.000 0.00 1.48 0.00 4.63
41 42 2.046892 GACACCATGCAGCGAGGT 60.047 61.111 2.80 2.80 35.65 3.85
42 43 1.672356 GACACCATGCAGCGAGGTT 60.672 57.895 5.86 0.00 32.15 3.50
43 44 1.915614 GACACCATGCAGCGAGGTTG 61.916 60.000 5.86 5.27 32.15 3.77
44 45 1.968017 CACCATGCAGCGAGGTTGT 60.968 57.895 5.86 0.00 32.15 3.32
45 46 1.672356 ACCATGCAGCGAGGTTGTC 60.672 57.895 2.80 0.00 29.58 3.18
53 54 3.147294 CGAGGTTGTCGTTCGCTG 58.853 61.111 0.00 0.00 44.20 5.18
54 55 1.660575 CGAGGTTGTCGTTCGCTGT 60.661 57.895 0.00 0.00 44.20 4.40
55 56 1.853319 GAGGTTGTCGTTCGCTGTG 59.147 57.895 0.00 0.00 0.00 3.66
56 57 1.557443 GAGGTTGTCGTTCGCTGTGG 61.557 60.000 0.00 0.00 0.00 4.17
57 58 2.604174 GGTTGTCGTTCGCTGTGGG 61.604 63.158 0.00 0.00 0.00 4.61
58 59 1.885850 GTTGTCGTTCGCTGTGGGT 60.886 57.895 0.00 0.00 0.00 4.51
59 60 0.598158 GTTGTCGTTCGCTGTGGGTA 60.598 55.000 0.00 0.00 0.00 3.69
60 61 0.319083 TTGTCGTTCGCTGTGGGTAT 59.681 50.000 0.00 0.00 0.00 2.73
61 62 0.108992 TGTCGTTCGCTGTGGGTATC 60.109 55.000 0.00 0.00 0.00 2.24
62 63 0.804933 GTCGTTCGCTGTGGGTATCC 60.805 60.000 0.00 0.00 0.00 2.59
63 64 1.216977 CGTTCGCTGTGGGTATCCA 59.783 57.895 0.00 0.00 41.58 3.41
72 73 3.417330 TGGGTATCCACTCTGGCTT 57.583 52.632 0.00 0.00 38.32 4.35
73 74 0.911769 TGGGTATCCACTCTGGCTTG 59.088 55.000 0.00 0.00 38.32 4.01
74 75 0.464554 GGGTATCCACTCTGGCTTGC 60.465 60.000 0.00 0.00 37.47 4.01
75 76 0.464554 GGTATCCACTCTGGCTTGCC 60.465 60.000 4.43 4.43 37.47 4.52
76 77 0.543749 GTATCCACTCTGGCTTGCCT 59.456 55.000 13.18 0.00 37.47 4.75
77 78 1.762957 GTATCCACTCTGGCTTGCCTA 59.237 52.381 13.18 0.49 37.47 3.93
78 79 0.835941 ATCCACTCTGGCTTGCCTAG 59.164 55.000 13.18 12.06 37.47 3.02
79 80 1.222936 CCACTCTGGCTTGCCTAGG 59.777 63.158 13.18 3.67 0.00 3.02
80 81 1.222936 CACTCTGGCTTGCCTAGGG 59.777 63.158 11.72 10.56 0.00 3.53
81 82 1.997874 ACTCTGGCTTGCCTAGGGG 60.998 63.158 11.72 5.81 0.00 4.79
82 83 2.692368 TCTGGCTTGCCTAGGGGG 60.692 66.667 11.72 0.00 38.36 5.40
91 92 3.631046 CCTAGGGGGCGGCAGATC 61.631 72.222 12.47 0.00 0.00 2.75
92 93 3.996124 CTAGGGGGCGGCAGATCG 61.996 72.222 12.47 0.00 0.00 3.69
101 102 4.451150 GGCAGATCGCGGTCCACA 62.451 66.667 17.38 0.00 43.84 4.17
102 103 3.188786 GCAGATCGCGGTCCACAC 61.189 66.667 17.38 0.00 0.00 3.82
103 104 2.509336 CAGATCGCGGTCCACACC 60.509 66.667 17.38 0.00 39.69 4.16
104 105 2.680352 AGATCGCGGTCCACACCT 60.680 61.111 17.38 0.00 41.17 4.00
105 106 2.202756 GATCGCGGTCCACACCTC 60.203 66.667 8.57 0.00 41.17 3.85
106 107 3.718210 GATCGCGGTCCACACCTCC 62.718 68.421 8.57 0.00 41.17 4.30
129 130 4.929315 GTGCAACGACACATTGTAAAAG 57.071 40.909 0.00 0.00 40.40 2.27
130 131 3.728718 GTGCAACGACACATTGTAAAAGG 59.271 43.478 0.00 0.00 40.40 3.11
131 132 3.628032 TGCAACGACACATTGTAAAAGGA 59.372 39.130 0.00 0.00 0.00 3.36
132 133 4.277174 TGCAACGACACATTGTAAAAGGAT 59.723 37.500 0.00 0.00 0.00 3.24
133 134 4.616802 GCAACGACACATTGTAAAAGGATG 59.383 41.667 0.00 0.00 0.00 3.51
134 135 4.419522 ACGACACATTGTAAAAGGATGC 57.580 40.909 0.00 0.00 0.00 3.91
135 136 3.120338 ACGACACATTGTAAAAGGATGCG 60.120 43.478 0.00 0.00 0.00 4.73
136 137 3.727673 CGACACATTGTAAAAGGATGCGG 60.728 47.826 0.00 0.00 0.00 5.69
137 138 3.153919 ACACATTGTAAAAGGATGCGGT 58.846 40.909 0.00 0.00 0.00 5.68
138 139 3.572255 ACACATTGTAAAAGGATGCGGTT 59.428 39.130 0.00 0.00 0.00 4.44
139 140 4.762765 ACACATTGTAAAAGGATGCGGTTA 59.237 37.500 0.00 0.00 0.00 2.85
140 141 5.241949 ACACATTGTAAAAGGATGCGGTTAA 59.758 36.000 0.00 0.00 0.00 2.01
141 142 6.071616 ACACATTGTAAAAGGATGCGGTTAAT 60.072 34.615 0.00 0.00 0.00 1.40
142 143 6.253298 CACATTGTAAAAGGATGCGGTTAATG 59.747 38.462 0.00 0.00 0.00 1.90
143 144 4.364415 TGTAAAAGGATGCGGTTAATGC 57.636 40.909 0.00 0.00 0.00 3.56
144 145 4.013728 TGTAAAAGGATGCGGTTAATGCT 58.986 39.130 4.57 0.00 0.00 3.79
145 146 3.782889 AAAAGGATGCGGTTAATGCTC 57.217 42.857 4.57 0.87 0.00 4.26
146 147 2.717639 AAGGATGCGGTTAATGCTCT 57.282 45.000 4.57 0.00 0.00 4.09
147 148 2.246719 AGGATGCGGTTAATGCTCTC 57.753 50.000 4.57 2.25 0.00 3.20
148 149 1.202698 AGGATGCGGTTAATGCTCTCC 60.203 52.381 12.62 12.62 36.04 3.71
149 150 1.202698 GGATGCGGTTAATGCTCTCCT 60.203 52.381 12.97 0.00 34.26 3.69
150 151 2.139118 GATGCGGTTAATGCTCTCCTC 58.861 52.381 4.57 0.00 0.00 3.71
151 152 1.195115 TGCGGTTAATGCTCTCCTCT 58.805 50.000 4.57 0.00 0.00 3.69
152 153 1.134699 TGCGGTTAATGCTCTCCTCTG 60.135 52.381 4.57 0.00 0.00 3.35
153 154 1.576356 CGGTTAATGCTCTCCTCTGC 58.424 55.000 0.00 0.00 0.00 4.26
154 155 1.137872 CGGTTAATGCTCTCCTCTGCT 59.862 52.381 0.00 0.00 0.00 4.24
155 156 2.419297 CGGTTAATGCTCTCCTCTGCTT 60.419 50.000 0.00 0.00 0.00 3.91
156 157 2.941720 GGTTAATGCTCTCCTCTGCTTG 59.058 50.000 0.00 0.00 0.00 4.01
157 158 2.941720 GTTAATGCTCTCCTCTGCTTGG 59.058 50.000 0.00 0.00 0.00 3.61
158 159 0.990374 AATGCTCTCCTCTGCTTGGT 59.010 50.000 0.00 0.00 0.00 3.67
159 160 0.990374 ATGCTCTCCTCTGCTTGGTT 59.010 50.000 0.00 0.00 0.00 3.67
160 161 0.767375 TGCTCTCCTCTGCTTGGTTT 59.233 50.000 0.00 0.00 0.00 3.27
161 162 1.271054 TGCTCTCCTCTGCTTGGTTTC 60.271 52.381 0.00 0.00 0.00 2.78
162 163 1.271054 GCTCTCCTCTGCTTGGTTTCA 60.271 52.381 0.00 0.00 0.00 2.69
163 164 2.421619 CTCTCCTCTGCTTGGTTTCAC 58.578 52.381 0.00 0.00 0.00 3.18
164 165 1.768275 TCTCCTCTGCTTGGTTTCACA 59.232 47.619 0.00 0.00 0.00 3.58
165 166 2.373169 TCTCCTCTGCTTGGTTTCACAT 59.627 45.455 0.00 0.00 0.00 3.21
166 167 3.152341 CTCCTCTGCTTGGTTTCACATT 58.848 45.455 0.00 0.00 0.00 2.71
167 168 2.886523 TCCTCTGCTTGGTTTCACATTG 59.113 45.455 0.00 0.00 0.00 2.82
168 169 2.029649 CCTCTGCTTGGTTTCACATTGG 60.030 50.000 0.00 0.00 0.00 3.16
169 170 1.962807 TCTGCTTGGTTTCACATTGGG 59.037 47.619 0.00 0.00 0.00 4.12
170 171 0.392336 TGCTTGGTTTCACATTGGGC 59.608 50.000 0.00 0.00 0.00 5.36
171 172 0.392336 GCTTGGTTTCACATTGGGCA 59.608 50.000 0.00 0.00 0.00 5.36
172 173 1.202627 GCTTGGTTTCACATTGGGCAA 60.203 47.619 0.00 0.00 0.00 4.52
173 174 2.482864 CTTGGTTTCACATTGGGCAAC 58.517 47.619 0.00 0.00 0.00 4.17
174 175 1.786937 TGGTTTCACATTGGGCAACT 58.213 45.000 1.54 0.00 0.00 3.16
175 176 1.411977 TGGTTTCACATTGGGCAACTG 59.588 47.619 1.54 0.00 0.00 3.16
176 177 1.412343 GGTTTCACATTGGGCAACTGT 59.588 47.619 1.54 0.00 0.00 3.55
177 178 2.545742 GGTTTCACATTGGGCAACTGTC 60.546 50.000 1.54 0.00 0.00 3.51
178 179 2.362077 GTTTCACATTGGGCAACTGTCT 59.638 45.455 0.00 0.00 0.00 3.41
179 180 2.363306 TCACATTGGGCAACTGTCTT 57.637 45.000 0.00 0.00 0.00 3.01
180 181 1.955778 TCACATTGGGCAACTGTCTTG 59.044 47.619 0.00 0.00 0.00 3.02
181 182 1.000060 CACATTGGGCAACTGTCTTGG 60.000 52.381 0.00 0.00 0.00 3.61
182 183 1.331214 CATTGGGCAACTGTCTTGGT 58.669 50.000 0.00 0.00 0.00 3.67
183 184 1.000060 CATTGGGCAACTGTCTTGGTG 60.000 52.381 0.00 0.00 0.00 4.17
184 185 0.257328 TTGGGCAACTGTCTTGGTGA 59.743 50.000 0.00 0.00 0.00 4.02
185 186 0.478072 TGGGCAACTGTCTTGGTGAT 59.522 50.000 0.00 0.00 0.00 3.06
186 187 1.168714 GGGCAACTGTCTTGGTGATC 58.831 55.000 0.00 0.00 0.00 2.92
187 188 0.798776 GGCAACTGTCTTGGTGATCG 59.201 55.000 0.00 0.00 0.00 3.69
188 189 1.608025 GGCAACTGTCTTGGTGATCGA 60.608 52.381 0.00 0.00 0.00 3.59
189 190 1.728971 GCAACTGTCTTGGTGATCGAG 59.271 52.381 0.00 0.00 0.00 4.04
190 191 2.868044 GCAACTGTCTTGGTGATCGAGT 60.868 50.000 0.00 0.00 0.00 4.18
191 192 2.989840 CAACTGTCTTGGTGATCGAGTC 59.010 50.000 0.00 0.00 0.00 3.36
192 193 1.546476 ACTGTCTTGGTGATCGAGTCC 59.454 52.381 0.00 0.00 0.00 3.85
193 194 1.821753 CTGTCTTGGTGATCGAGTCCT 59.178 52.381 0.00 0.00 0.00 3.85
194 195 1.819288 TGTCTTGGTGATCGAGTCCTC 59.181 52.381 0.00 0.00 0.00 3.71
195 196 2.096248 GTCTTGGTGATCGAGTCCTCT 58.904 52.381 0.00 0.00 0.00 3.69
196 197 2.494073 GTCTTGGTGATCGAGTCCTCTT 59.506 50.000 0.00 0.00 0.00 2.85
197 198 2.755655 TCTTGGTGATCGAGTCCTCTTC 59.244 50.000 0.00 0.00 0.00 2.87
198 199 2.516227 TGGTGATCGAGTCCTCTTCT 57.484 50.000 0.00 0.00 0.00 2.85
199 200 2.808919 TGGTGATCGAGTCCTCTTCTT 58.191 47.619 0.00 0.00 0.00 2.52
200 201 2.493675 TGGTGATCGAGTCCTCTTCTTG 59.506 50.000 0.00 0.00 0.00 3.02
201 202 2.535331 GTGATCGAGTCCTCTTCTTGC 58.465 52.381 0.00 0.00 0.00 4.01
202 203 1.478510 TGATCGAGTCCTCTTCTTGCC 59.521 52.381 0.00 0.00 0.00 4.52
203 204 1.478510 GATCGAGTCCTCTTCTTGCCA 59.521 52.381 0.00 0.00 0.00 4.92
204 205 1.338107 TCGAGTCCTCTTCTTGCCAA 58.662 50.000 0.00 0.00 0.00 4.52
205 206 1.902508 TCGAGTCCTCTTCTTGCCAAT 59.097 47.619 0.00 0.00 0.00 3.16
206 207 2.093973 TCGAGTCCTCTTCTTGCCAATC 60.094 50.000 0.00 0.00 0.00 2.67
226 227 1.658994 GACCCGACGAATGCCATAAA 58.341 50.000 0.00 0.00 0.00 1.40
233 234 3.242413 CGACGAATGCCATAAAGGAACAG 60.242 47.826 0.00 0.00 41.22 3.16
275 277 3.693578 GTCGCTGTAGACTAGGTTTAGGT 59.306 47.826 0.00 0.00 38.09 3.08
280 282 2.915657 AGACTAGGTTTAGGTCCGGT 57.084 50.000 0.00 0.00 0.00 5.28
331 337 9.781834 TGTGTTTCGGTTTATATGAAAATCATC 57.218 29.630 0.00 0.00 38.26 2.92
334 340 7.795482 TTCGGTTTATATGAAAATCATCCGT 57.205 32.000 13.61 0.16 39.11 4.69
354 360 9.611284 CATCCGTTTTGTATGTAATTCATATGG 57.389 33.333 2.13 0.00 40.54 2.74
357 363 9.796120 CCGTTTTGTATGTAATTCATATGGTTT 57.204 29.630 2.13 0.00 40.54 3.27
362 368 8.231692 TGTATGTAATTCATATGGTTTGGTGG 57.768 34.615 2.13 0.00 40.54 4.61
363 369 8.055790 TGTATGTAATTCATATGGTTTGGTGGA 58.944 33.333 2.13 0.00 40.54 4.02
364 370 6.767524 TGTAATTCATATGGTTTGGTGGAC 57.232 37.500 2.13 0.00 0.00 4.02
369 375 8.608185 AATTCATATGGTTTGGTGGACTTTAT 57.392 30.769 2.13 0.00 0.00 1.40
398 404 8.461222 TGAAATGTATGATTGAATGACCAGTTC 58.539 33.333 0.00 0.00 0.00 3.01
402 408 4.271696 TGATTGAATGACCAGTTCTCGT 57.728 40.909 0.00 0.00 0.00 4.18
407 413 7.706607 TGATTGAATGACCAGTTCTCGTATTAG 59.293 37.037 0.00 0.00 0.00 1.73
411 417 5.717078 TGACCAGTTCTCGTATTAGTGTT 57.283 39.130 0.00 0.00 0.00 3.32
425 431 3.998672 TGTTCGCGGACTGGTCCC 61.999 66.667 20.15 6.26 46.96 4.46
437 443 2.125269 GGTCCCCACCGATCAACG 60.125 66.667 0.00 0.00 42.18 4.10
470 476 5.106442 GGTGTTAAAACAACCAACCAAGAG 58.894 41.667 0.00 0.00 40.72 2.85
509 515 3.666797 GGTATTTGAAACGAAAACGCTGG 59.333 43.478 0.00 0.00 0.00 4.85
649 655 1.654954 GCGCTCCTCGTGTAGAAGGA 61.655 60.000 0.00 0.00 41.07 3.36
727 733 1.523758 CCTCGGTCTTTGGTCTTTGG 58.476 55.000 0.00 0.00 0.00 3.28
738 744 1.969923 TGGTCTTTGGCAAATTCCCAG 59.030 47.619 22.01 8.92 33.13 4.45
829 835 3.339093 CCCCCACCCCTCTTCACC 61.339 72.222 0.00 0.00 0.00 4.02
1037 1043 4.195334 GCGGGGGCAGGATGTGAT 62.195 66.667 0.00 0.00 39.31 3.06
1077 1083 1.144057 GGCAATGGACGAGGACGAT 59.856 57.895 0.00 0.00 42.66 3.73
1213 1219 4.751767 AAAATGCTCTCACTCCTCCTAG 57.248 45.455 0.00 0.00 0.00 3.02
1307 1313 1.364171 GCCTGATGCTCGTCCGTAT 59.636 57.895 0.00 0.00 36.87 3.06
1322 1328 2.490115 TCCGTATGTTTGATTGGTTGCC 59.510 45.455 0.00 0.00 0.00 4.52
1346 1352 2.094752 GGTGCTGTGTGTCTTGTGTTTT 60.095 45.455 0.00 0.00 0.00 2.43
1501 1507 0.111639 GTTGGTATGGTGTGGGGTGT 59.888 55.000 0.00 0.00 0.00 4.16
1536 1542 9.944663 GAGATGTTTCTGTTTAATTTACACACA 57.055 29.630 0.00 0.00 30.30 3.72
1577 1583 3.648339 AACTGAATGTTGTGCCATGTC 57.352 42.857 0.00 0.00 37.52 3.06
1716 1722 0.589223 TGTCAAAAATCCCACGTCGC 59.411 50.000 0.00 0.00 0.00 5.19
1729 1735 2.604174 CGTCGCCTCGCTTTGGTTT 61.604 57.895 0.00 0.00 0.00 3.27
1770 1776 4.124943 ATGGGCTGCTGCTCCAGG 62.125 66.667 23.03 0.00 40.81 4.45
1816 1905 5.767816 AAATTGCTAGTATAAAAGGGCGG 57.232 39.130 0.00 0.00 0.00 6.13
2140 2352 1.656095 CGTTGGATCTTCAGTTCTCGC 59.344 52.381 0.00 0.00 0.00 5.03
2207 2419 2.888218 GGTTCGCTAAGATCGAGCC 58.112 57.895 14.71 4.33 46.71 4.70
2328 2540 1.133884 GGGTTGCTGGTAATAGGGGAC 60.134 57.143 0.00 0.00 0.00 4.46
2467 2679 8.776376 AATTCAATGTTTGTCTGTTTTTGTCT 57.224 26.923 0.00 0.00 0.00 3.41
2712 2985 7.762615 GGACAAAACTAAAATATAAAGGGTGCC 59.237 37.037 0.00 0.00 0.00 5.01
2768 3041 4.536364 AGTCACTTCAAATTGTCACACG 57.464 40.909 0.00 0.00 0.00 4.49
2901 3179 3.902881 TGAGTTGCACCCAAAACATTT 57.097 38.095 0.00 0.00 31.68 2.32
2924 3202 7.696992 TTCCACCTTTCTAAAATGTATGACC 57.303 36.000 0.00 0.00 0.00 4.02
3076 3770 1.195442 TTGACCATCAGGGCCGTACA 61.195 55.000 0.00 0.00 45.14 2.90
3085 3779 0.683504 AGGGCCGTACACGAGAATCT 60.684 55.000 2.76 0.00 43.02 2.40
3107 3801 1.749063 GGGGCCAGTGCAAAATAGTAC 59.251 52.381 4.39 0.00 40.13 2.73
3109 3803 2.683362 GGGCCAGTGCAAAATAGTACTC 59.317 50.000 4.39 0.00 40.13 2.59
3165 3859 4.560919 GCTAGTCTTATATTGTGGGACGGG 60.561 50.000 0.00 0.00 32.86 5.28
3203 3898 5.458595 AGGCCCTTTTATGGAAAATCCTAG 58.541 41.667 0.00 0.00 37.46 3.02
3337 4040 2.239400 TCCTAGTATGATGCACCGGAG 58.761 52.381 9.46 0.00 0.00 4.63
3494 4198 0.596082 CGGCGTTTGGAAGTTGGAAT 59.404 50.000 0.00 0.00 0.00 3.01
3514 4218 1.202794 TGTTGCACAGGAGATGAAGCA 60.203 47.619 0.00 0.00 40.11 3.91
3597 4301 2.637382 CAAAATTTTAGGGGCCCTGTGT 59.363 45.455 35.70 15.20 34.61 3.72
3640 4344 4.787551 CTTACCATATGGGCCTGTTAACA 58.212 43.478 25.55 8.28 42.05 2.41
3643 4347 4.619679 ACCATATGGGCCTGTTAACAATT 58.380 39.130 25.55 0.00 42.05 2.32
3761 4465 1.635663 GCGCGCTTGTGTTGTATCCT 61.636 55.000 26.67 0.00 0.00 3.24
3788 4505 3.186119 GGTGTGTGTGTTTGTTGGATTG 58.814 45.455 0.00 0.00 0.00 2.67
3829 4551 3.651803 ATGATACGTAGCTCTTCTGCC 57.348 47.619 12.66 0.00 0.00 4.85
3870 4592 6.268158 TGTTGACCATCTTACAGTTAGTGGTA 59.732 38.462 11.48 0.00 39.86 3.25
3921 4644 4.042311 TCAGCCTTGTTGTTTAGTCCCATA 59.958 41.667 0.00 0.00 0.00 2.74
3924 4647 6.016555 AGCCTTGTTGTTTAGTCCCATAAAT 58.983 36.000 0.00 0.00 0.00 1.40
3970 4694 5.900425 TGTTTTGCAGCTTCTGATGTTTTA 58.100 33.333 0.00 0.00 32.44 1.52
4051 4775 3.718434 TCAGGCATTGATCTCCTAATGGT 59.282 43.478 5.84 0.00 35.40 3.55
4087 4811 4.406943 GCAGAGAGCAAAAAGGTAAATCG 58.593 43.478 0.00 0.00 44.79 3.34
4095 4819 7.012989 AGAGCAAAAAGGTAAATCGTAGTTGTT 59.987 33.333 0.00 0.00 0.00 2.83
4589 5313 0.727398 GATGACCAACGGTTGCTAGC 59.273 55.000 15.31 8.10 35.25 3.42
4623 5347 0.676782 CCCGCGGAAGTTTGGAGAAT 60.677 55.000 30.73 0.00 0.00 2.40
4644 5368 6.597280 AGAATCATCTTTTCAGGAGTAAGTGC 59.403 38.462 0.00 0.00 29.15 4.40
5107 5963 3.391506 AAAGGCCTTGCATTTCTTCAC 57.608 42.857 21.33 0.00 38.10 3.18
5200 6056 6.586844 GCAACTATACTGAGAACCGATAATCC 59.413 42.308 0.00 0.00 0.00 3.01
5590 6446 7.181305 TGTTTCCTTTGATAGGTGATAGGTACA 59.819 37.037 0.00 0.00 45.03 2.90
5643 6582 8.908786 ATTATAATGACTGTGTACAAGGATGG 57.091 34.615 0.00 0.00 0.00 3.51
5644 6583 4.640771 AATGACTGTGTACAAGGATGGT 57.359 40.909 0.00 0.00 0.00 3.55
5678 6617 1.272490 GTTTTAGGGCCTGCACCTTTC 59.728 52.381 18.53 0.00 39.54 2.62
5709 6648 5.391310 CCTTCGCATTTATGTGGATGCTATC 60.391 44.000 6.73 0.00 44.90 2.08
5754 6693 6.231211 AGGTGATTACGGATATTTAAGGCAG 58.769 40.000 0.00 0.00 0.00 4.85
5935 6874 5.121768 CCACTCATTCTTTTATTCGGTTCGT 59.878 40.000 0.00 0.00 0.00 3.85
6441 7380 1.227497 GCCAATGAGGAGCCTCTCG 60.227 63.158 16.87 5.91 43.12 4.04
6444 7383 1.967066 CCAATGAGGAGCCTCTCGTAT 59.033 52.381 16.87 0.15 43.12 3.06
6522 7461 4.468765 AGACTCACCTGTTCATCATGAG 57.531 45.455 0.09 0.00 38.45 2.90
6559 7498 2.124983 CGTCCAGCACTGATGGGG 60.125 66.667 13.42 2.50 39.86 4.96
6712 7653 0.409484 AACATTGACTTGGGAGGGGG 59.591 55.000 0.00 0.00 0.00 5.40
6815 7756 0.905357 GGCACAGGAAGAAGAGCCTA 59.095 55.000 0.00 0.00 39.02 3.93
6833 7774 2.608998 CCTAGTGCATGTATGGCTCTCG 60.609 54.545 0.00 0.00 36.58 4.04
6834 7775 0.826715 AGTGCATGTATGGCTCTCGT 59.173 50.000 0.00 0.00 29.85 4.18
6835 7776 1.202463 AGTGCATGTATGGCTCTCGTC 60.202 52.381 0.00 0.00 29.85 4.20
6907 7852 3.366121 GTCGTCTTCGCCATCATATCATG 59.634 47.826 0.00 0.00 36.96 3.07
6927 7872 0.873054 CTTCCATGATGAGCGATGGC 59.127 55.000 0.00 0.00 39.29 4.40
6928 7873 0.180878 TTCCATGATGAGCGATGGCA 59.819 50.000 1.50 0.00 43.41 4.92
6929 7874 0.250166 TCCATGATGAGCGATGGCAG 60.250 55.000 1.50 0.00 43.41 4.85
6930 7875 1.574925 CATGATGAGCGATGGCAGC 59.425 57.895 1.50 0.00 43.41 5.25
6931 7876 1.959738 ATGATGAGCGATGGCAGCG 60.960 57.895 22.35 22.35 43.41 5.18
6986 7937 1.004560 TGACAGGGCTCGCTTTCAG 60.005 57.895 0.00 0.00 0.00 3.02
7138 8100 2.124612 CTGGCGGTGGCATCATGA 60.125 61.111 0.00 0.00 42.47 3.07
7179 8141 1.963515 AGGTGGAAATCAAGCACCAAC 59.036 47.619 0.00 0.00 40.04 3.77
7219 8181 2.507339 ATTGTCAAAAACCACCGCAG 57.493 45.000 0.00 0.00 0.00 5.18
7235 12095 0.248621 GCAGTTGTGTTGGACAGTGC 60.249 55.000 0.00 0.00 38.49 4.40
7246 12106 0.521735 GGACAGTGCGGAAAACCATC 59.478 55.000 0.00 0.00 0.00 3.51
7270 12130 5.683743 CGTTTTCATAGAAGTTTGCCGAAAA 59.316 36.000 0.00 0.00 0.00 2.29
7311 12171 1.443802 GCCAAGAGCACTAACTGGTC 58.556 55.000 2.85 0.00 46.26 4.02
7326 12186 2.872245 ACTGGTCGATTGACTGTGTTTG 59.128 45.455 12.89 0.00 44.83 2.93
7338 12198 0.107410 TGTGTTTGGACAGCGAACCT 60.107 50.000 0.00 0.00 36.20 3.50
7346 12206 4.680237 CAGCGAACCTGGCGTCCA 62.680 66.667 0.00 0.00 37.93 4.02
7372 12232 1.227823 CAAAGTCAGGGCCACGTGA 60.228 57.895 19.30 0.41 39.02 4.35
7387 12247 3.384668 CACGTGACAAGTGATCACTCTT 58.615 45.455 28.01 17.70 43.60 2.85
7402 12262 5.165961 TCACTCTTATTTCCTCCAACCTG 57.834 43.478 0.00 0.00 0.00 4.00
7410 12270 1.352083 TCCTCCAACCTGACCTTCAG 58.648 55.000 0.00 0.00 43.91 3.02
7411 12271 1.059913 CCTCCAACCTGACCTTCAGT 58.940 55.000 2.63 0.00 42.80 3.41
7412 12272 1.271054 CCTCCAACCTGACCTTCAGTG 60.271 57.143 2.63 0.00 42.80 3.66
7413 12273 1.694150 CTCCAACCTGACCTTCAGTGA 59.306 52.381 2.63 0.00 42.80 3.41
7414 12274 1.416401 TCCAACCTGACCTTCAGTGAC 59.584 52.381 0.00 0.00 42.80 3.67
7415 12275 1.140852 CCAACCTGACCTTCAGTGACA 59.859 52.381 0.00 0.00 42.80 3.58
7416 12276 2.421388 CCAACCTGACCTTCAGTGACAA 60.421 50.000 0.00 0.00 42.80 3.18
7417 12277 2.874701 CAACCTGACCTTCAGTGACAAG 59.125 50.000 0.00 0.00 42.80 3.16
7418 12278 2.119495 ACCTGACCTTCAGTGACAAGT 58.881 47.619 0.00 0.00 42.80 3.16
7419 12279 2.158900 ACCTGACCTTCAGTGACAAGTG 60.159 50.000 0.00 0.00 42.80 3.16
7420 12280 2.103094 CCTGACCTTCAGTGACAAGTGA 59.897 50.000 0.00 0.00 42.80 3.41
7421 12281 3.244353 CCTGACCTTCAGTGACAAGTGAT 60.244 47.826 0.00 0.00 42.80 3.06
7422 12282 3.993081 CTGACCTTCAGTGACAAGTGATC 59.007 47.826 0.00 0.00 39.58 2.92
7423 12283 3.387699 TGACCTTCAGTGACAAGTGATCA 59.612 43.478 0.00 0.00 35.65 2.92
7424 12284 3.733337 ACCTTCAGTGACAAGTGATCAC 58.267 45.455 18.47 18.47 45.70 3.06
7434 12294 7.527084 GTGACAAGTGATCACTCTTATTACC 57.473 40.000 28.01 11.93 42.68 2.85
7435 12295 7.324178 GTGACAAGTGATCACTCTTATTACCT 58.676 38.462 28.01 6.95 42.68 3.08
7436 12296 7.489757 GTGACAAGTGATCACTCTTATTACCTC 59.510 40.741 28.01 12.00 42.68 3.85
7437 12297 6.879400 ACAAGTGATCACTCTTATTACCTCC 58.121 40.000 28.01 0.00 41.58 4.30
7438 12298 6.440647 ACAAGTGATCACTCTTATTACCTCCA 59.559 38.462 28.01 0.00 41.58 3.86
7439 12299 7.038302 ACAAGTGATCACTCTTATTACCTCCAA 60.038 37.037 28.01 0.00 41.58 3.53
7440 12300 6.879400 AGTGATCACTCTTATTACCTCCAAC 58.121 40.000 22.89 0.00 36.92 3.77
7441 12301 6.049790 GTGATCACTCTTATTACCTCCAACC 58.950 44.000 18.83 0.00 0.00 3.77
7442 12302 5.964477 TGATCACTCTTATTACCTCCAACCT 59.036 40.000 0.00 0.00 0.00 3.50
7443 12303 5.934402 TCACTCTTATTACCTCCAACCTC 57.066 43.478 0.00 0.00 0.00 3.85
7444 12304 5.338632 TCACTCTTATTACCTCCAACCTCA 58.661 41.667 0.00 0.00 0.00 3.86
7445 12305 5.187186 TCACTCTTATTACCTCCAACCTCAC 59.813 44.000 0.00 0.00 0.00 3.51
7446 12306 4.470304 ACTCTTATTACCTCCAACCTCACC 59.530 45.833 0.00 0.00 0.00 4.02
7447 12307 4.695606 TCTTATTACCTCCAACCTCACCT 58.304 43.478 0.00 0.00 0.00 4.00
7448 12308 5.098663 TCTTATTACCTCCAACCTCACCTT 58.901 41.667 0.00 0.00 0.00 3.50
7449 12309 5.189145 TCTTATTACCTCCAACCTCACCTTC 59.811 44.000 0.00 0.00 0.00 3.46
7450 12310 2.409064 TACCTCCAACCTCACCTTCA 57.591 50.000 0.00 0.00 0.00 3.02
7451 12311 1.518367 ACCTCCAACCTCACCTTCAA 58.482 50.000 0.00 0.00 0.00 2.69
7452 12312 1.421646 ACCTCCAACCTCACCTTCAAG 59.578 52.381 0.00 0.00 0.00 3.02
7453 12313 1.699634 CCTCCAACCTCACCTTCAAGA 59.300 52.381 0.00 0.00 0.00 3.02
7454 12314 2.307098 CCTCCAACCTCACCTTCAAGAT 59.693 50.000 0.00 0.00 0.00 2.40
7455 12315 3.604582 CTCCAACCTCACCTTCAAGATC 58.395 50.000 0.00 0.00 0.00 2.75
7456 12316 3.251484 TCCAACCTCACCTTCAAGATCT 58.749 45.455 0.00 0.00 0.00 2.75
7457 12317 4.425772 TCCAACCTCACCTTCAAGATCTA 58.574 43.478 0.00 0.00 0.00 1.98
7458 12318 4.223032 TCCAACCTCACCTTCAAGATCTAC 59.777 45.833 0.00 0.00 0.00 2.59
7459 12319 4.177026 CAACCTCACCTTCAAGATCTACG 58.823 47.826 0.00 0.00 0.00 3.51
7460 12320 2.761208 ACCTCACCTTCAAGATCTACGG 59.239 50.000 0.00 0.00 0.00 4.02
7461 12321 3.024547 CCTCACCTTCAAGATCTACGGA 58.975 50.000 0.00 0.00 0.00 4.69
7462 12322 3.181485 CCTCACCTTCAAGATCTACGGAC 60.181 52.174 0.00 0.00 0.00 4.79
7463 12323 2.758979 TCACCTTCAAGATCTACGGACC 59.241 50.000 0.00 0.00 0.00 4.46
7464 12324 1.749634 ACCTTCAAGATCTACGGACCG 59.250 52.381 13.61 13.61 0.00 4.79
7465 12325 2.022195 CCTTCAAGATCTACGGACCGA 58.978 52.381 23.38 3.17 0.00 4.69
7466 12326 2.623889 CCTTCAAGATCTACGGACCGAT 59.376 50.000 23.38 3.02 0.00 4.18
7467 12327 3.551046 CCTTCAAGATCTACGGACCGATG 60.551 52.174 23.38 12.56 0.00 3.84
7468 12328 1.337071 TCAAGATCTACGGACCGATGC 59.663 52.381 23.38 4.93 0.00 3.91
7469 12329 0.311165 AAGATCTACGGACCGATGCG 59.689 55.000 23.38 5.54 46.59 4.73
7470 12330 1.729838 GATCTACGGACCGATGCGC 60.730 63.158 23.38 0.00 44.76 6.09
7471 12331 2.131294 GATCTACGGACCGATGCGCT 62.131 60.000 23.38 0.00 44.76 5.92
7472 12332 2.131294 ATCTACGGACCGATGCGCTC 62.131 60.000 23.38 2.56 44.76 5.03
7473 12333 3.120979 CTACGGACCGATGCGCTCA 62.121 63.158 23.38 0.00 44.76 4.26
7474 12334 2.607668 CTACGGACCGATGCGCTCAA 62.608 60.000 23.38 0.00 44.76 3.02
7475 12335 2.215465 TACGGACCGATGCGCTCAAA 62.215 55.000 23.38 0.00 44.76 2.69
7476 12336 2.785258 GGACCGATGCGCTCAAAC 59.215 61.111 9.73 0.00 0.00 2.93
7477 12337 2.750888 GGACCGATGCGCTCAAACC 61.751 63.158 9.73 1.44 0.00 3.27
7478 12338 1.741770 GACCGATGCGCTCAAACCT 60.742 57.895 9.73 0.00 0.00 3.50
7479 12339 1.970917 GACCGATGCGCTCAAACCTG 61.971 60.000 9.73 0.00 0.00 4.00
7480 12340 1.741401 CCGATGCGCTCAAACCTGA 60.741 57.895 9.73 0.00 0.00 3.86
7481 12341 1.298157 CCGATGCGCTCAAACCTGAA 61.298 55.000 9.73 0.00 0.00 3.02
7482 12342 0.516877 CGATGCGCTCAAACCTGAAA 59.483 50.000 9.73 0.00 0.00 2.69
7483 12343 1.131126 CGATGCGCTCAAACCTGAAAT 59.869 47.619 9.73 0.00 0.00 2.17
7484 12344 2.351418 CGATGCGCTCAAACCTGAAATA 59.649 45.455 9.73 0.00 0.00 1.40
7485 12345 3.002656 CGATGCGCTCAAACCTGAAATAT 59.997 43.478 9.73 0.00 0.00 1.28
7486 12346 4.496341 CGATGCGCTCAAACCTGAAATATT 60.496 41.667 9.73 0.00 0.00 1.28
7487 12347 4.355543 TGCGCTCAAACCTGAAATATTC 57.644 40.909 9.73 0.00 0.00 1.75
7488 12348 4.009675 TGCGCTCAAACCTGAAATATTCT 58.990 39.130 9.73 0.00 0.00 2.40
7489 12349 4.458989 TGCGCTCAAACCTGAAATATTCTT 59.541 37.500 9.73 0.00 0.00 2.52
7490 12350 5.048083 TGCGCTCAAACCTGAAATATTCTTT 60.048 36.000 9.73 0.00 0.00 2.52
7491 12351 6.150307 TGCGCTCAAACCTGAAATATTCTTTA 59.850 34.615 9.73 0.00 0.00 1.85
7492 12352 7.148086 TGCGCTCAAACCTGAAATATTCTTTAT 60.148 33.333 9.73 0.00 0.00 1.40
7493 12353 7.702348 GCGCTCAAACCTGAAATATTCTTTATT 59.298 33.333 0.00 0.00 0.00 1.40
7494 12354 9.226345 CGCTCAAACCTGAAATATTCTTTATTC 57.774 33.333 0.00 0.00 0.00 1.75
7495 12355 9.226345 GCTCAAACCTGAAATATTCTTTATTCG 57.774 33.333 0.00 0.00 0.00 3.34
7498 12358 9.722056 CAAACCTGAAATATTCTTTATTCGAGG 57.278 33.333 0.00 0.00 0.00 4.63
7499 12359 9.681062 AAACCTGAAATATTCTTTATTCGAGGA 57.319 29.630 0.00 0.00 30.96 3.71
7500 12360 8.894768 ACCTGAAATATTCTTTATTCGAGGAG 57.105 34.615 0.00 0.00 30.96 3.69
7501 12361 7.442666 ACCTGAAATATTCTTTATTCGAGGAGC 59.557 37.037 0.00 0.00 30.96 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.405585 ATGGTGTCAAGACAAGGGGG 59.594 55.000 4.20 0.00 43.77 5.40
13 14 1.538047 CATGGTGTCAAGACAAGGGG 58.462 55.000 4.20 0.00 43.77 4.79
14 15 0.883833 GCATGGTGTCAAGACAAGGG 59.116 55.000 4.20 0.00 43.77 3.95
15 16 1.538512 CTGCATGGTGTCAAGACAAGG 59.461 52.381 4.20 0.00 43.77 3.61
16 17 1.068748 GCTGCATGGTGTCAAGACAAG 60.069 52.381 4.20 0.00 43.77 3.16
17 18 0.953727 GCTGCATGGTGTCAAGACAA 59.046 50.000 4.20 0.00 43.77 3.18
18 19 1.229975 CGCTGCATGGTGTCAAGACA 61.230 55.000 0.00 0.00 39.32 3.41
19 20 0.950555 TCGCTGCATGGTGTCAAGAC 60.951 55.000 0.00 0.00 0.00 3.01
20 21 0.671472 CTCGCTGCATGGTGTCAAGA 60.671 55.000 0.00 0.00 0.00 3.02
21 22 1.642037 CCTCGCTGCATGGTGTCAAG 61.642 60.000 0.00 0.00 0.00 3.02
22 23 1.672030 CCTCGCTGCATGGTGTCAA 60.672 57.895 0.00 0.00 0.00 3.18
23 24 2.046988 CCTCGCTGCATGGTGTCA 60.047 61.111 0.00 0.00 0.00 3.58
24 25 1.672356 AACCTCGCTGCATGGTGTC 60.672 57.895 13.12 0.00 33.89 3.67
25 26 1.968017 CAACCTCGCTGCATGGTGT 60.968 57.895 13.12 3.18 33.89 4.16
26 27 1.915614 GACAACCTCGCTGCATGGTG 61.916 60.000 13.12 5.58 33.89 4.17
27 28 1.672356 GACAACCTCGCTGCATGGT 60.672 57.895 7.60 7.60 35.29 3.55
28 29 2.743752 CGACAACCTCGCTGCATGG 61.744 63.158 0.00 3.26 35.06 3.66
29 30 2.780643 CGACAACCTCGCTGCATG 59.219 61.111 0.00 0.00 35.06 4.06
37 38 1.557443 CCACAGCGAACGACAACCTC 61.557 60.000 0.00 0.00 0.00 3.85
38 39 1.594293 CCACAGCGAACGACAACCT 60.594 57.895 0.00 0.00 0.00 3.50
39 40 2.604174 CCCACAGCGAACGACAACC 61.604 63.158 0.00 0.00 0.00 3.77
40 41 0.598158 TACCCACAGCGAACGACAAC 60.598 55.000 0.00 0.00 0.00 3.32
41 42 0.319083 ATACCCACAGCGAACGACAA 59.681 50.000 0.00 0.00 0.00 3.18
42 43 0.108992 GATACCCACAGCGAACGACA 60.109 55.000 0.00 0.00 0.00 4.35
43 44 0.804933 GGATACCCACAGCGAACGAC 60.805 60.000 0.00 0.00 0.00 4.34
44 45 1.252215 TGGATACCCACAGCGAACGA 61.252 55.000 0.00 0.00 37.58 3.85
45 46 1.216977 TGGATACCCACAGCGAACG 59.783 57.895 0.00 0.00 37.58 3.95
54 55 0.911769 CAAGCCAGAGTGGATACCCA 59.088 55.000 0.00 0.00 40.96 4.51
55 56 0.464554 GCAAGCCAGAGTGGATACCC 60.465 60.000 0.00 0.00 40.96 3.69
56 57 0.464554 GGCAAGCCAGAGTGGATACC 60.465 60.000 6.14 0.00 40.96 2.73
57 58 0.543749 AGGCAAGCCAGAGTGGATAC 59.456 55.000 14.40 0.00 40.96 2.24
58 59 2.042464 CTAGGCAAGCCAGAGTGGATA 58.958 52.381 14.40 0.00 40.96 2.59
59 60 0.835941 CTAGGCAAGCCAGAGTGGAT 59.164 55.000 14.40 0.00 40.96 3.41
60 61 1.267574 CCTAGGCAAGCCAGAGTGGA 61.268 60.000 14.40 0.00 40.96 4.02
61 62 1.222936 CCTAGGCAAGCCAGAGTGG 59.777 63.158 14.40 3.93 41.55 4.00
62 63 1.222936 CCCTAGGCAAGCCAGAGTG 59.777 63.158 14.40 0.00 38.92 3.51
63 64 1.997874 CCCCTAGGCAAGCCAGAGT 60.998 63.158 14.40 0.00 38.92 3.24
64 65 2.750657 CCCCCTAGGCAAGCCAGAG 61.751 68.421 14.40 9.71 38.92 3.35
65 66 2.692368 CCCCCTAGGCAAGCCAGA 60.692 66.667 14.40 0.00 38.92 3.86
74 75 3.631046 GATCTGCCGCCCCCTAGG 61.631 72.222 0.06 0.06 39.47 3.02
75 76 3.996124 CGATCTGCCGCCCCCTAG 61.996 72.222 0.00 0.00 0.00 3.02
84 85 4.451150 TGTGGACCGCGATCTGCC 62.451 66.667 8.23 1.27 42.08 4.85
85 86 3.188786 GTGTGGACCGCGATCTGC 61.189 66.667 8.23 0.00 41.47 4.26
86 87 2.509336 GGTGTGGACCGCGATCTG 60.509 66.667 8.23 0.00 30.61 2.90
101 102 3.542676 TGTCGTTGCACGGGAGGT 61.543 61.111 8.46 0.00 42.81 3.85
102 103 3.041940 GTGTCGTTGCACGGGAGG 61.042 66.667 8.46 0.00 42.81 4.30
103 104 1.227999 AATGTGTCGTTGCACGGGAG 61.228 55.000 8.46 0.00 42.81 4.30
104 105 1.227704 AATGTGTCGTTGCACGGGA 60.228 52.632 8.46 0.00 42.81 5.14
105 106 1.082169 CAATGTGTCGTTGCACGGG 60.082 57.895 8.46 0.00 42.81 5.28
106 107 0.862490 TACAATGTGTCGTTGCACGG 59.138 50.000 0.00 0.00 42.81 4.94
107 108 2.654426 TTACAATGTGTCGTTGCACG 57.346 45.000 0.00 0.00 44.19 5.34
108 109 3.728718 CCTTTTACAATGTGTCGTTGCAC 59.271 43.478 0.00 0.00 39.65 4.57
109 110 3.628032 TCCTTTTACAATGTGTCGTTGCA 59.372 39.130 0.00 0.00 34.08 4.08
110 111 4.217754 TCCTTTTACAATGTGTCGTTGC 57.782 40.909 0.00 0.00 34.08 4.17
111 112 4.616802 GCATCCTTTTACAATGTGTCGTTG 59.383 41.667 0.00 0.90 36.54 4.10
112 113 4.612712 CGCATCCTTTTACAATGTGTCGTT 60.613 41.667 0.00 0.00 0.00 3.85
113 114 3.120338 CGCATCCTTTTACAATGTGTCGT 60.120 43.478 0.00 0.00 0.00 4.34
114 115 3.416277 CGCATCCTTTTACAATGTGTCG 58.584 45.455 0.00 0.00 0.00 4.35
115 116 3.190535 ACCGCATCCTTTTACAATGTGTC 59.809 43.478 0.00 0.00 30.72 3.67
116 117 3.153919 ACCGCATCCTTTTACAATGTGT 58.846 40.909 0.00 0.00 30.72 3.72
117 118 3.848272 ACCGCATCCTTTTACAATGTG 57.152 42.857 0.00 0.00 0.00 3.21
118 119 5.968528 TTAACCGCATCCTTTTACAATGT 57.031 34.783 0.00 0.00 0.00 2.71
119 120 5.231991 GCATTAACCGCATCCTTTTACAATG 59.768 40.000 0.00 0.00 0.00 2.82
120 121 5.127031 AGCATTAACCGCATCCTTTTACAAT 59.873 36.000 1.88 0.00 0.00 2.71
121 122 4.461081 AGCATTAACCGCATCCTTTTACAA 59.539 37.500 1.88 0.00 0.00 2.41
122 123 4.013728 AGCATTAACCGCATCCTTTTACA 58.986 39.130 1.88 0.00 0.00 2.41
123 124 4.335594 AGAGCATTAACCGCATCCTTTTAC 59.664 41.667 1.88 0.00 0.00 2.01
124 125 4.523083 AGAGCATTAACCGCATCCTTTTA 58.477 39.130 1.88 0.00 0.00 1.52
125 126 3.356290 AGAGCATTAACCGCATCCTTTT 58.644 40.909 1.88 0.00 0.00 2.27
126 127 2.945668 GAGAGCATTAACCGCATCCTTT 59.054 45.455 1.88 0.00 0.00 3.11
127 128 2.565841 GAGAGCATTAACCGCATCCTT 58.434 47.619 1.88 0.00 0.00 3.36
128 129 1.202698 GGAGAGCATTAACCGCATCCT 60.203 52.381 12.32 3.36 35.64 3.24
129 130 1.202698 AGGAGAGCATTAACCGCATCC 60.203 52.381 11.92 11.92 37.63 3.51
130 131 2.139118 GAGGAGAGCATTAACCGCATC 58.861 52.381 1.88 0.00 0.00 3.91
131 132 1.765314 AGAGGAGAGCATTAACCGCAT 59.235 47.619 1.88 0.00 0.00 4.73
132 133 1.134699 CAGAGGAGAGCATTAACCGCA 60.135 52.381 1.88 0.00 0.00 5.69
133 134 1.576356 CAGAGGAGAGCATTAACCGC 58.424 55.000 0.00 0.00 0.00 5.68
134 135 1.137872 AGCAGAGGAGAGCATTAACCG 59.862 52.381 0.00 0.00 0.00 4.44
135 136 2.941720 CAAGCAGAGGAGAGCATTAACC 59.058 50.000 0.00 0.00 0.00 2.85
136 137 2.941720 CCAAGCAGAGGAGAGCATTAAC 59.058 50.000 0.00 0.00 0.00 2.01
137 138 2.573462 ACCAAGCAGAGGAGAGCATTAA 59.427 45.455 0.00 0.00 0.00 1.40
138 139 2.191400 ACCAAGCAGAGGAGAGCATTA 58.809 47.619 0.00 0.00 0.00 1.90
139 140 0.990374 ACCAAGCAGAGGAGAGCATT 59.010 50.000 0.00 0.00 0.00 3.56
140 141 0.990374 AACCAAGCAGAGGAGAGCAT 59.010 50.000 0.00 0.00 0.00 3.79
141 142 0.767375 AAACCAAGCAGAGGAGAGCA 59.233 50.000 0.00 0.00 0.00 4.26
142 143 1.271054 TGAAACCAAGCAGAGGAGAGC 60.271 52.381 0.00 0.00 0.00 4.09
143 144 2.224378 TGTGAAACCAAGCAGAGGAGAG 60.224 50.000 0.00 0.00 34.36 3.20
144 145 1.768275 TGTGAAACCAAGCAGAGGAGA 59.232 47.619 0.00 0.00 34.36 3.71
145 146 2.260844 TGTGAAACCAAGCAGAGGAG 57.739 50.000 0.00 0.00 34.36 3.69
146 147 2.886523 CAATGTGAAACCAAGCAGAGGA 59.113 45.455 0.00 0.00 34.36 3.71
147 148 2.029649 CCAATGTGAAACCAAGCAGAGG 60.030 50.000 0.00 0.00 34.36 3.69
148 149 2.029649 CCCAATGTGAAACCAAGCAGAG 60.030 50.000 0.00 0.00 34.36 3.35
149 150 1.962807 CCCAATGTGAAACCAAGCAGA 59.037 47.619 0.00 0.00 34.36 4.26
150 151 1.606224 GCCCAATGTGAAACCAAGCAG 60.606 52.381 0.00 0.00 34.36 4.24
151 152 0.392336 GCCCAATGTGAAACCAAGCA 59.608 50.000 0.00 0.00 34.36 3.91
152 153 0.392336 TGCCCAATGTGAAACCAAGC 59.608 50.000 0.00 0.00 34.36 4.01
153 154 2.102925 AGTTGCCCAATGTGAAACCAAG 59.897 45.455 0.00 0.00 34.36 3.61
154 155 2.114616 AGTTGCCCAATGTGAAACCAA 58.885 42.857 0.00 0.00 34.36 3.67
155 156 1.411977 CAGTTGCCCAATGTGAAACCA 59.588 47.619 0.00 0.00 34.36 3.67
156 157 1.412343 ACAGTTGCCCAATGTGAAACC 59.588 47.619 1.73 0.00 34.36 3.27
157 158 2.362077 AGACAGTTGCCCAATGTGAAAC 59.638 45.455 0.00 0.00 37.35 2.78
158 159 2.665165 AGACAGTTGCCCAATGTGAAA 58.335 42.857 0.00 0.00 0.00 2.69
159 160 2.361757 CAAGACAGTTGCCCAATGTGAA 59.638 45.455 0.00 0.00 0.00 3.18
160 161 1.955778 CAAGACAGTTGCCCAATGTGA 59.044 47.619 0.00 0.00 0.00 3.58
161 162 1.000060 CCAAGACAGTTGCCCAATGTG 60.000 52.381 0.00 0.00 0.00 3.21
162 163 1.331214 CCAAGACAGTTGCCCAATGT 58.669 50.000 0.00 0.00 0.00 2.71
163 164 1.000060 CACCAAGACAGTTGCCCAATG 60.000 52.381 0.00 0.00 0.00 2.82
164 165 1.133513 TCACCAAGACAGTTGCCCAAT 60.134 47.619 0.00 0.00 0.00 3.16
165 166 0.257328 TCACCAAGACAGTTGCCCAA 59.743 50.000 0.00 0.00 0.00 4.12
166 167 0.478072 ATCACCAAGACAGTTGCCCA 59.522 50.000 0.00 0.00 0.00 5.36
167 168 1.168714 GATCACCAAGACAGTTGCCC 58.831 55.000 0.00 0.00 0.00 5.36
168 169 0.798776 CGATCACCAAGACAGTTGCC 59.201 55.000 0.00 0.00 0.00 4.52
169 170 1.728971 CTCGATCACCAAGACAGTTGC 59.271 52.381 0.00 0.00 0.00 4.17
170 171 2.989840 GACTCGATCACCAAGACAGTTG 59.010 50.000 0.00 0.00 0.00 3.16
171 172 2.028930 GGACTCGATCACCAAGACAGTT 60.029 50.000 0.00 0.00 0.00 3.16
172 173 1.546476 GGACTCGATCACCAAGACAGT 59.454 52.381 0.00 0.00 0.00 3.55
173 174 1.821753 AGGACTCGATCACCAAGACAG 59.178 52.381 0.00 0.00 0.00 3.51
174 175 1.819288 GAGGACTCGATCACCAAGACA 59.181 52.381 0.00 0.00 0.00 3.41
175 176 2.096248 AGAGGACTCGATCACCAAGAC 58.904 52.381 0.00 0.00 34.09 3.01
176 177 2.516227 AGAGGACTCGATCACCAAGA 57.484 50.000 0.00 0.00 34.09 3.02
177 178 2.757868 AGAAGAGGACTCGATCACCAAG 59.242 50.000 9.66 0.00 34.09 3.61
178 179 2.808919 AGAAGAGGACTCGATCACCAA 58.191 47.619 9.66 0.00 34.09 3.67
179 180 2.493675 CAAGAAGAGGACTCGATCACCA 59.506 50.000 9.66 0.00 34.09 4.17
180 181 2.737039 GCAAGAAGAGGACTCGATCACC 60.737 54.545 9.66 0.00 34.09 4.02
181 182 2.535331 GCAAGAAGAGGACTCGATCAC 58.465 52.381 9.66 0.00 34.09 3.06
182 183 1.478510 GGCAAGAAGAGGACTCGATCA 59.521 52.381 9.66 0.00 34.09 2.92
183 184 1.478510 TGGCAAGAAGAGGACTCGATC 59.521 52.381 0.00 0.00 34.09 3.69
184 185 1.561643 TGGCAAGAAGAGGACTCGAT 58.438 50.000 0.00 0.00 34.09 3.59
185 186 1.338107 TTGGCAAGAAGAGGACTCGA 58.662 50.000 0.00 0.00 34.09 4.04
186 187 2.275318 GATTGGCAAGAAGAGGACTCG 58.725 52.381 5.96 0.00 34.09 4.18
187 188 2.093973 TCGATTGGCAAGAAGAGGACTC 60.094 50.000 5.96 0.00 0.00 3.36
188 189 1.902508 TCGATTGGCAAGAAGAGGACT 59.097 47.619 5.96 0.00 0.00 3.85
189 190 2.003301 GTCGATTGGCAAGAAGAGGAC 58.997 52.381 5.96 3.09 0.00 3.85
190 191 1.066143 GGTCGATTGGCAAGAAGAGGA 60.066 52.381 5.96 0.00 0.00 3.71
191 192 1.373570 GGTCGATTGGCAAGAAGAGG 58.626 55.000 5.96 0.00 0.00 3.69
192 193 1.373570 GGGTCGATTGGCAAGAAGAG 58.626 55.000 5.96 0.00 0.00 2.85
193 194 0.391130 CGGGTCGATTGGCAAGAAGA 60.391 55.000 5.96 1.95 0.00 2.87
194 195 0.391130 TCGGGTCGATTGGCAAGAAG 60.391 55.000 5.96 0.00 0.00 2.85
195 196 0.672401 GTCGGGTCGATTGGCAAGAA 60.672 55.000 5.96 0.00 38.42 2.52
196 197 1.079405 GTCGGGTCGATTGGCAAGA 60.079 57.895 5.96 0.00 38.42 3.02
197 198 2.452813 CGTCGGGTCGATTGGCAAG 61.453 63.158 5.96 0.00 38.42 4.01
198 199 2.433491 CGTCGGGTCGATTGGCAA 60.433 61.111 0.68 0.68 38.42 4.52
199 200 2.233605 ATTCGTCGGGTCGATTGGCA 62.234 55.000 0.00 0.00 38.42 4.92
200 201 1.520787 ATTCGTCGGGTCGATTGGC 60.521 57.895 0.00 0.00 38.42 4.52
201 202 1.762222 GCATTCGTCGGGTCGATTGG 61.762 60.000 15.69 5.59 39.76 3.16
202 203 1.636340 GCATTCGTCGGGTCGATTG 59.364 57.895 0.00 12.31 41.20 2.67
203 204 1.520787 GGCATTCGTCGGGTCGATT 60.521 57.895 0.00 0.00 38.42 3.34
204 205 2.028125 ATGGCATTCGTCGGGTCGAT 62.028 55.000 0.00 0.00 38.42 3.59
205 206 1.385756 TATGGCATTCGTCGGGTCGA 61.386 55.000 4.78 0.00 38.08 4.20
206 207 0.528901 TTATGGCATTCGTCGGGTCG 60.529 55.000 4.78 0.00 0.00 4.79
226 227 1.071471 CCACGTCCTTGCTGTTCCT 59.929 57.895 0.00 0.00 0.00 3.36
233 234 2.432628 CCGTCTCCACGTCCTTGC 60.433 66.667 0.00 0.00 45.17 4.01
263 265 3.746792 ACTACCGGACCTAAACCTAGT 57.253 47.619 9.46 0.00 0.00 2.57
309 315 8.215926 ACGGATGATTTTCATATAAACCGAAA 57.784 30.769 16.64 0.00 39.90 3.46
311 317 7.795482 AACGGATGATTTTCATATAAACCGA 57.205 32.000 16.64 0.00 39.90 4.69
331 337 9.796120 AAACCATATGAATTACATACAAAACGG 57.204 29.630 3.65 0.00 43.12 4.44
354 360 8.432110 ACATTTCAAAATAAAGTCCACCAAAC 57.568 30.769 0.00 0.00 0.00 2.93
357 363 9.083422 TCATACATTTCAAAATAAAGTCCACCA 57.917 29.630 0.00 0.00 0.00 4.17
369 375 9.642327 CTGGTCATTCAATCATACATTTCAAAA 57.358 29.630 0.00 0.00 0.00 2.44
387 393 6.282199 ACACTAATACGAGAACTGGTCATT 57.718 37.500 0.00 0.00 0.00 2.57
398 404 2.107178 GTCCGCGAACACTAATACGAG 58.893 52.381 8.23 0.00 0.00 4.18
402 408 1.820519 ACCAGTCCGCGAACACTAATA 59.179 47.619 8.23 0.00 0.00 0.98
407 413 2.737376 GGACCAGTCCGCGAACAC 60.737 66.667 8.23 0.27 40.36 3.32
429 435 0.659417 CCGTATCCGTCCGTTGATCG 60.659 60.000 0.00 0.00 39.52 3.69
435 441 1.173043 TTAACACCGTATCCGTCCGT 58.827 50.000 0.00 0.00 0.00 4.69
437 443 3.324993 TGTTTTAACACCGTATCCGTCC 58.675 45.455 0.00 0.00 33.17 4.79
458 464 8.079809 CGTAAAAATTACATCTCTTGGTTGGTT 58.920 33.333 1.67 0.00 0.00 3.67
509 515 0.404426 AACCTAGGCCCTGTTTGGAC 59.596 55.000 9.30 0.00 38.35 4.02
649 655 0.618458 TGGTCGCTTCTTTATGGCCT 59.382 50.000 3.32 0.00 0.00 5.19
727 733 0.817654 GCAGGGTACTGGGAATTTGC 59.182 55.000 0.00 0.00 45.04 3.68
829 835 3.132111 GGAAGGAACTAGCAAGAGAGAGG 59.868 52.174 0.00 0.00 38.49 3.69
1089 1095 1.746615 CCGGATCCAGCAACCAGTG 60.747 63.158 13.41 0.00 0.00 3.66
1137 1143 3.068691 TCGACCTTGGAGCCCGAG 61.069 66.667 0.00 2.28 34.87 4.63
1213 1219 1.126846 CCAGAAAGTGAACGCGATGTC 59.873 52.381 15.93 7.76 0.00 3.06
1322 1328 2.111043 AAGACACACAGCACCCGG 59.889 61.111 0.00 0.00 0.00 5.73
1346 1352 2.293170 CCTCTGTCATCTCGAGTGCTA 58.707 52.381 13.13 0.00 0.00 3.49
1501 1507 9.676861 ATTAAACAGAAACATCTCATCTCATGA 57.323 29.630 0.00 0.00 37.76 3.07
1534 1540 4.623932 ACATCAACTCATGTACCACTGT 57.376 40.909 0.00 0.00 35.10 3.55
1536 1542 6.650807 CAGTTTACATCAACTCATGTACCACT 59.349 38.462 0.00 0.00 38.68 4.00
1577 1583 1.819632 GGGTAATGGCAGCACTCCG 60.820 63.158 0.00 0.00 0.00 4.63
1716 1722 1.200020 CCTTAGCAAACCAAAGCGAGG 59.800 52.381 0.00 0.00 34.40 4.63
1729 1735 0.666913 GATACCGCTCGACCTTAGCA 59.333 55.000 0.00 0.00 40.08 3.49
1770 1776 1.607801 GCAGGCTCCCCAAATTGTCC 61.608 60.000 0.00 0.00 0.00 4.02
1816 1905 0.178973 AACCCCACAAGTGTAAGCCC 60.179 55.000 0.00 0.00 0.00 5.19
2140 2352 2.195123 AATCGAACGGCCAAAAGCGG 62.195 55.000 2.24 0.00 45.17 5.52
2328 2540 2.300152 TCCTGCTTCAACCACTACAGAG 59.700 50.000 0.00 0.00 0.00 3.35
2467 2679 4.816786 TGTATGCGTCTACAAGCGTATA 57.183 40.909 0.00 0.00 37.23 1.47
2567 2836 5.883673 TGGAACCCTAAATGTTAAATCTCGG 59.116 40.000 0.00 0.00 0.00 4.63
2583 2852 3.036452 AGCATGCATAAATGGAACCCT 57.964 42.857 21.98 0.00 0.00 4.34
2901 3179 6.184789 GGGTCATACATTTTAGAAAGGTGGA 58.815 40.000 1.45 0.00 0.00 4.02
2924 3202 1.901591 ACAGCAGATGACTTTGTGGG 58.098 50.000 0.00 0.00 0.00 4.61
3076 3770 2.285368 TGGCCCCCAGATTCTCGT 60.285 61.111 0.00 0.00 0.00 4.18
3085 3779 0.614415 CTATTTTGCACTGGCCCCCA 60.614 55.000 0.00 0.00 40.13 4.96
3107 3801 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3109 3803 5.425539 ACATCTTATATTATGGGACGGAGGG 59.574 44.000 0.00 0.00 0.00 4.30
3165 3859 2.716969 AGGGCCTTATTTCATACTCCCC 59.283 50.000 0.00 0.00 33.06 4.81
3354 4058 7.605410 TTCCACTAAAAAGATCACCGATAAC 57.395 36.000 0.00 0.00 0.00 1.89
3551 4255 9.253832 TGAGGCCTCAAAAATTATCTTAAATGA 57.746 29.630 33.41 2.13 36.53 2.57
3640 4344 2.019156 GCCTCTAGCTCCCGCAAAATT 61.019 52.381 0.00 0.00 39.10 1.82
3643 4347 2.290287 TGCCTCTAGCTCCCGCAAA 61.290 57.895 0.00 0.00 44.23 3.68
3761 4465 1.282447 ACAAACACACACACCCCTACA 59.718 47.619 0.00 0.00 0.00 2.74
3788 4505 7.945033 TCATTGCATTAAGAAGGAAAAACAC 57.055 32.000 0.00 0.00 0.00 3.32
3888 4611 2.008242 ACAAGGCTGACAGTCTCTCT 57.992 50.000 10.64 0.00 0.00 3.10
3970 4694 3.777106 TGTGAATCCTTGCTTCTGAGT 57.223 42.857 0.00 0.00 0.00 3.41
4034 4758 8.915057 AGACATTAACCATTAGGAGATCAATG 57.085 34.615 0.00 0.00 38.69 2.82
4051 4775 4.748892 GCTCTCTGCACAGTAGACATTAA 58.251 43.478 0.00 0.00 42.31 1.40
4087 4811 4.265073 AGCTGATTGATCCCAACAACTAC 58.735 43.478 0.00 0.00 34.72 2.73
4589 5313 1.136085 CGCGGGGCATAAATTCGTATG 60.136 52.381 0.00 0.00 35.03 2.39
4623 5347 5.489792 AGCACTTACTCCTGAAAAGATGA 57.510 39.130 0.00 0.00 0.00 2.92
4743 5472 6.036735 CGACCAAGAGTCTAAGAGTAGAAGAG 59.963 46.154 0.00 0.00 43.91 2.85
4835 5564 6.421801 GTCAAATTAGCACACAAGCAGAATTT 59.578 34.615 0.00 0.00 40.17 1.82
5107 5963 0.801251 CTGGCCTTTCAGCTTCTTCG 59.199 55.000 3.32 0.00 0.00 3.79
5200 6056 9.608617 GCAAATGTAATAGTCTGAATGATCATG 57.391 33.333 9.46 0.00 34.37 3.07
5344 6200 1.798626 ACTCAGGAGCTGCATATCCA 58.201 50.000 17.14 0.02 38.12 3.41
5545 6401 2.809119 ACATAACGCATTGTTTGTCGGA 59.191 40.909 0.00 0.00 42.09 4.55
5590 6446 7.978925 AGTTGCTAGGTTATAAGCCTATCAAT 58.021 34.615 20.70 13.34 42.75 2.57
5632 6571 2.548057 CACACACACACCATCCTTGTAC 59.452 50.000 0.00 0.00 0.00 2.90
5633 6572 2.486370 CCACACACACACCATCCTTGTA 60.486 50.000 0.00 0.00 0.00 2.41
5635 6574 0.953727 CCACACACACACCATCCTTG 59.046 55.000 0.00 0.00 0.00 3.61
5636 6575 0.843309 TCCACACACACACCATCCTT 59.157 50.000 0.00 0.00 0.00 3.36
5637 6576 0.397941 CTCCACACACACACCATCCT 59.602 55.000 0.00 0.00 0.00 3.24
5638 6577 0.108585 ACTCCACACACACACCATCC 59.891 55.000 0.00 0.00 0.00 3.51
5639 6578 1.229428 CACTCCACACACACACCATC 58.771 55.000 0.00 0.00 0.00 3.51
5640 6579 0.546122 ACACTCCACACACACACCAT 59.454 50.000 0.00 0.00 0.00 3.55
5641 6580 0.326595 AACACTCCACACACACACCA 59.673 50.000 0.00 0.00 0.00 4.17
5642 6581 1.459450 AAACACTCCACACACACACC 58.541 50.000 0.00 0.00 0.00 4.16
5643 6582 3.064820 CCTAAAACACTCCACACACACAC 59.935 47.826 0.00 0.00 0.00 3.82
5644 6583 3.275143 CCTAAAACACTCCACACACACA 58.725 45.455 0.00 0.00 0.00 3.72
5678 6617 1.066002 CATAAATGCGAAGGTGGCCAG 59.934 52.381 5.11 0.00 0.00 4.85
5754 6693 2.338015 CCCACAGCAGCACATGGAC 61.338 63.158 10.45 0.00 33.80 4.02
5868 6807 5.295540 GGAGATTCATTCAGCTTAGTTGACC 59.704 44.000 0.00 0.00 0.00 4.02
5935 6874 3.334691 CGAGGGAATTCAACAAGCTACA 58.665 45.455 7.93 0.00 0.00 2.74
6441 7380 1.146358 GAGAAGCGTGCGGACCATAC 61.146 60.000 0.00 0.00 0.00 2.39
6444 7383 4.373116 GGAGAAGCGTGCGGACCA 62.373 66.667 0.00 0.00 0.00 4.02
6522 7461 1.954382 GAGAACCCAACCTTGAACCAC 59.046 52.381 0.00 0.00 0.00 4.16
6559 7498 2.580326 CCAATGCACGCGCCATTC 60.580 61.111 18.98 0.47 37.32 2.67
6712 7653 4.620982 CAAACAAAACCCTGTCTGATTCC 58.379 43.478 0.00 0.00 0.00 3.01
6815 7756 0.826715 ACGAGAGCCATACATGCACT 59.173 50.000 0.00 0.00 32.16 4.40
6907 7852 0.873054 CCATCGCTCATCATGGAAGC 59.127 55.000 0.00 0.00 42.11 3.86
6927 7872 3.002348 GCAACTTAAATACTAGGCCGCTG 59.998 47.826 0.00 0.00 0.00 5.18
6928 7873 3.203716 GCAACTTAAATACTAGGCCGCT 58.796 45.455 0.00 0.00 0.00 5.52
6929 7874 2.940410 TGCAACTTAAATACTAGGCCGC 59.060 45.455 0.00 0.00 0.00 6.53
6930 7875 4.574828 ACATGCAACTTAAATACTAGGCCG 59.425 41.667 0.00 0.00 0.00 6.13
6931 7876 5.733373 GCACATGCAACTTAAATACTAGGCC 60.733 44.000 0.00 0.00 41.59 5.19
6935 7880 9.389755 TCAATAGCACATGCAACTTAAATACTA 57.610 29.630 6.64 0.00 45.16 1.82
6936 7881 8.279970 TCAATAGCACATGCAACTTAAATACT 57.720 30.769 6.64 0.00 45.16 2.12
6937 7882 8.961092 CATCAATAGCACATGCAACTTAAATAC 58.039 33.333 6.64 0.00 45.16 1.89
6986 7937 3.662290 TGGCAAATGTACCAGGACC 57.338 52.632 0.00 0.00 0.00 4.46
7127 8089 1.089920 GGTCACTGTCATGATGCCAC 58.910 55.000 0.00 0.00 0.00 5.01
7138 8100 3.632333 TGATATTCTCTCCGGTCACTGT 58.368 45.455 0.00 0.00 0.00 3.55
7179 8141 9.113876 GACAATTTTACTTGTTTCCATCGTAAG 57.886 33.333 0.00 0.00 39.40 2.34
7204 8166 1.135257 CACAACTGCGGTGGTTTTTGA 60.135 47.619 1.82 0.00 32.65 2.69
7219 8181 1.092921 TCCGCACTGTCCAACACAAC 61.093 55.000 0.00 0.00 33.31 3.32
7246 12106 4.398549 TCGGCAAACTTCTATGAAAACG 57.601 40.909 0.00 0.00 0.00 3.60
7270 12130 1.544691 ACTCGCTTACTGAATCGGTGT 59.455 47.619 4.73 0.00 0.00 4.16
7271 12131 2.279582 ACTCGCTTACTGAATCGGTG 57.720 50.000 4.73 0.00 0.00 4.94
7275 12135 2.346803 TGGCAACTCGCTTACTGAATC 58.653 47.619 0.00 0.00 41.91 2.52
7311 12171 2.349817 GCTGTCCAAACACAGTCAATCG 60.350 50.000 2.73 0.00 44.98 3.34
7326 12186 4.681978 ACGCCAGGTTCGCTGTCC 62.682 66.667 0.00 0.00 0.00 4.02
7346 12206 2.845345 CCCTGACTTTGTGGGGCCT 61.845 63.158 0.84 0.00 37.37 5.19
7353 12213 1.525995 CACGTGGCCCTGACTTTGT 60.526 57.895 7.95 0.00 0.00 2.83
7355 12215 1.227853 GTCACGTGGCCCTGACTTT 60.228 57.895 17.00 0.00 34.99 2.66
7372 12232 6.013379 TGGAGGAAATAAGAGTGATCACTTGT 60.013 38.462 28.46 20.60 42.66 3.16
7387 12247 3.913799 TGAAGGTCAGGTTGGAGGAAATA 59.086 43.478 0.00 0.00 0.00 1.40
7402 12262 3.743396 GTGATCACTTGTCACTGAAGGTC 59.257 47.826 18.83 0.00 42.04 3.85
7410 12270 7.324178 AGGTAATAAGAGTGATCACTTGTCAC 58.676 38.462 28.46 19.43 42.66 3.67
7411 12271 7.363880 GGAGGTAATAAGAGTGATCACTTGTCA 60.364 40.741 28.46 14.79 42.66 3.58
7412 12272 6.981559 GGAGGTAATAAGAGTGATCACTTGTC 59.018 42.308 28.46 16.52 42.66 3.18
7413 12273 6.440647 TGGAGGTAATAAGAGTGATCACTTGT 59.559 38.462 28.46 20.60 42.66 3.16
7414 12274 6.878317 TGGAGGTAATAAGAGTGATCACTTG 58.122 40.000 28.46 0.00 42.66 3.16
7415 12275 7.331791 GTTGGAGGTAATAAGAGTGATCACTT 58.668 38.462 28.46 16.66 42.66 3.16
7416 12276 6.127026 GGTTGGAGGTAATAAGAGTGATCACT 60.127 42.308 28.23 28.23 45.84 3.41
7417 12277 6.049790 GGTTGGAGGTAATAAGAGTGATCAC 58.950 44.000 18.47 18.47 0.00 3.06
7418 12278 5.964477 AGGTTGGAGGTAATAAGAGTGATCA 59.036 40.000 0.00 0.00 0.00 2.92
7419 12279 6.098409 TGAGGTTGGAGGTAATAAGAGTGATC 59.902 42.308 0.00 0.00 0.00 2.92
7420 12280 5.964477 TGAGGTTGGAGGTAATAAGAGTGAT 59.036 40.000 0.00 0.00 0.00 3.06
7421 12281 5.187186 GTGAGGTTGGAGGTAATAAGAGTGA 59.813 44.000 0.00 0.00 0.00 3.41
7422 12282 5.420409 GTGAGGTTGGAGGTAATAAGAGTG 58.580 45.833 0.00 0.00 0.00 3.51
7423 12283 4.470304 GGTGAGGTTGGAGGTAATAAGAGT 59.530 45.833 0.00 0.00 0.00 3.24
7424 12284 4.717280 AGGTGAGGTTGGAGGTAATAAGAG 59.283 45.833 0.00 0.00 0.00 2.85
7425 12285 4.695606 AGGTGAGGTTGGAGGTAATAAGA 58.304 43.478 0.00 0.00 0.00 2.10
7426 12286 5.045869 TGAAGGTGAGGTTGGAGGTAATAAG 60.046 44.000 0.00 0.00 0.00 1.73
7427 12287 4.847512 TGAAGGTGAGGTTGGAGGTAATAA 59.152 41.667 0.00 0.00 0.00 1.40
7428 12288 4.431378 TGAAGGTGAGGTTGGAGGTAATA 58.569 43.478 0.00 0.00 0.00 0.98
7429 12289 3.256704 TGAAGGTGAGGTTGGAGGTAAT 58.743 45.455 0.00 0.00 0.00 1.89
7430 12290 2.696775 TGAAGGTGAGGTTGGAGGTAA 58.303 47.619 0.00 0.00 0.00 2.85
7431 12291 2.409064 TGAAGGTGAGGTTGGAGGTA 57.591 50.000 0.00 0.00 0.00 3.08
7432 12292 1.421646 CTTGAAGGTGAGGTTGGAGGT 59.578 52.381 0.00 0.00 0.00 3.85
7433 12293 1.699634 TCTTGAAGGTGAGGTTGGAGG 59.300 52.381 0.00 0.00 0.00 4.30
7434 12294 3.262915 AGATCTTGAAGGTGAGGTTGGAG 59.737 47.826 0.00 0.00 0.00 3.86
7435 12295 3.251484 AGATCTTGAAGGTGAGGTTGGA 58.749 45.455 0.00 0.00 0.00 3.53
7436 12296 3.710209 AGATCTTGAAGGTGAGGTTGG 57.290 47.619 0.00 0.00 0.00 3.77
7437 12297 4.177026 CGTAGATCTTGAAGGTGAGGTTG 58.823 47.826 0.00 0.00 0.00 3.77
7438 12298 3.195825 CCGTAGATCTTGAAGGTGAGGTT 59.804 47.826 0.00 0.00 0.00 3.50
7439 12299 2.761208 CCGTAGATCTTGAAGGTGAGGT 59.239 50.000 0.00 0.00 0.00 3.85
7440 12300 3.024547 TCCGTAGATCTTGAAGGTGAGG 58.975 50.000 0.00 0.00 0.00 3.86
7441 12301 3.181485 GGTCCGTAGATCTTGAAGGTGAG 60.181 52.174 0.00 0.00 0.00 3.51
7442 12302 2.758979 GGTCCGTAGATCTTGAAGGTGA 59.241 50.000 0.00 0.00 0.00 4.02
7443 12303 2.479730 CGGTCCGTAGATCTTGAAGGTG 60.480 54.545 0.00 0.00 0.00 4.00
7444 12304 1.749634 CGGTCCGTAGATCTTGAAGGT 59.250 52.381 0.00 0.00 0.00 3.50
7445 12305 2.022195 TCGGTCCGTAGATCTTGAAGG 58.978 52.381 11.88 0.00 0.00 3.46
7446 12306 3.633235 CATCGGTCCGTAGATCTTGAAG 58.367 50.000 11.88 0.00 0.00 3.02
7447 12307 2.223735 GCATCGGTCCGTAGATCTTGAA 60.224 50.000 11.88 0.00 0.00 2.69
7448 12308 1.337071 GCATCGGTCCGTAGATCTTGA 59.663 52.381 11.88 0.00 0.00 3.02
7449 12309 1.772182 GCATCGGTCCGTAGATCTTG 58.228 55.000 11.88 0.00 0.00 3.02
7450 12310 0.311165 CGCATCGGTCCGTAGATCTT 59.689 55.000 11.88 0.00 0.00 2.40
7451 12311 1.950007 CGCATCGGTCCGTAGATCT 59.050 57.895 11.88 0.00 0.00 2.75
7452 12312 1.729838 GCGCATCGGTCCGTAGATC 60.730 63.158 11.88 0.00 0.00 2.75
7453 12313 2.131294 GAGCGCATCGGTCCGTAGAT 62.131 60.000 11.47 0.00 46.63 1.98
7454 12314 2.827190 AGCGCATCGGTCCGTAGA 60.827 61.111 11.47 0.00 29.31 2.59
7455 12315 2.353607 GAGCGCATCGGTCCGTAG 60.354 66.667 11.47 6.26 46.63 3.51
7461 12321 2.034879 CAGGTTTGAGCGCATCGGT 61.035 57.895 11.47 0.00 41.33 4.69
7462 12322 1.298157 TTCAGGTTTGAGCGCATCGG 61.298 55.000 11.47 0.00 34.15 4.18
7463 12323 0.516877 TTTCAGGTTTGAGCGCATCG 59.483 50.000 11.47 0.00 34.15 3.84
7464 12324 2.927553 ATTTCAGGTTTGAGCGCATC 57.072 45.000 11.47 4.91 34.15 3.91
7465 12325 4.641989 AGAATATTTCAGGTTTGAGCGCAT 59.358 37.500 11.47 0.00 34.15 4.73
7466 12326 4.009675 AGAATATTTCAGGTTTGAGCGCA 58.990 39.130 11.47 0.00 34.15 6.09
7467 12327 4.622701 AGAATATTTCAGGTTTGAGCGC 57.377 40.909 0.00 0.00 34.15 5.92
7468 12328 9.226345 GAATAAAGAATATTTCAGGTTTGAGCG 57.774 33.333 0.00 0.00 34.15 5.03
7469 12329 9.226345 CGAATAAAGAATATTTCAGGTTTGAGC 57.774 33.333 0.00 0.00 34.15 4.26
7472 12332 9.722056 CCTCGAATAAAGAATATTTCAGGTTTG 57.278 33.333 0.00 0.00 0.00 2.93
7473 12333 9.681062 TCCTCGAATAAAGAATATTTCAGGTTT 57.319 29.630 0.00 0.00 0.00 3.27
7474 12334 9.331282 CTCCTCGAATAAAGAATATTTCAGGTT 57.669 33.333 0.00 0.00 0.00 3.50
7475 12335 7.442666 GCTCCTCGAATAAAGAATATTTCAGGT 59.557 37.037 0.00 0.00 0.00 4.00
7476 12336 7.801752 GCTCCTCGAATAAAGAATATTTCAGG 58.198 38.462 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.