Multiple sequence alignment - TraesCS3A01G210600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G210600 chr3A 100.000 3964 0 0 1 3964 376787121 376783158 0.000000e+00 7321.0
1 TraesCS3A01G210600 chr3A 95.775 71 3 0 595 665 744760755 744760685 9.000000e-22 115.0
2 TraesCS3A01G210600 chr3A 92.958 71 5 0 591 661 19178572 19178502 1.950000e-18 104.0
3 TraesCS3A01G210600 chr3D 95.946 2590 81 14 840 3411 287301442 287298859 0.000000e+00 4180.0
4 TraesCS3A01G210600 chr3D 89.420 586 41 8 1 585 287340254 287339689 0.000000e+00 719.0
5 TraesCS3A01G210600 chr3D 87.526 473 21 17 3494 3964 287294425 287293989 2.730000e-141 512.0
6 TraesCS3A01G210600 chr3D 90.909 88 4 2 498 585 287339377 287339294 9.000000e-22 115.0
7 TraesCS3A01G210600 chr3B 95.355 2605 92 17 722 3309 380516024 380513432 0.000000e+00 4113.0
8 TraesCS3A01G210600 chr3B 89.792 480 31 7 1 471 380517711 380517241 2.040000e-167 599.0
9 TraesCS3A01G210600 chr3B 90.190 316 13 3 3372 3687 380510345 380510048 2.870000e-106 396.0
10 TraesCS3A01G210600 chr3B 84.962 266 13 11 3700 3964 380509027 380508788 1.100000e-60 244.0
11 TraesCS3A01G210600 chr3B 93.103 58 2 2 3309 3366 380513348 380513293 2.540000e-12 84.2
12 TraesCS3A01G210600 chr4A 94.366 71 4 0 595 665 499955923 499955853 4.190000e-20 110.0
13 TraesCS3A01G210600 chr4A 91.026 78 6 1 588 665 178806173 178806097 1.950000e-18 104.0
14 TraesCS3A01G210600 chr4A 91.892 74 5 1 588 661 15815181 15815253 7.010000e-18 102.0
15 TraesCS3A01G210600 chr7A 95.522 67 3 0 595 661 555649642 555649708 1.510000e-19 108.0
16 TraesCS3A01G210600 chr7A 94.030 67 4 0 595 661 84295836 84295770 7.010000e-18 102.0
17 TraesCS3A01G210600 chr2A 95.522 67 3 0 595 661 4385444 4385510 1.510000e-19 108.0
18 TraesCS3A01G210600 chr1A 91.892 74 6 0 588 661 548544016 548544089 1.950000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G210600 chr3A 376783158 376787121 3963 True 7321.00 7321 100.0000 1 3964 1 chr3A.!!$R2 3963
1 TraesCS3A01G210600 chr3D 287298859 287301442 2583 True 4180.00 4180 95.9460 840 3411 1 chr3D.!!$R2 2571
2 TraesCS3A01G210600 chr3D 287339294 287340254 960 True 417.00 719 90.1645 1 585 2 chr3D.!!$R3 584
3 TraesCS3A01G210600 chr3B 380508788 380517711 8923 True 1087.24 4113 90.6804 1 3964 5 chr3B.!!$R1 3963

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 317 0.034059 CTCACCCACGATATCCCAGC 59.966 60.0 0.00 0.0 0.00 4.85 F
753 2092 0.183971 GAGAGAGATCGGTCCCTCCA 59.816 60.0 3.22 0.0 35.57 3.86 F
1578 2980 0.039764 CCCCTTCCCCTTTCACCTTC 59.960 60.0 0.00 0.0 0.00 3.46 F
2308 3714 1.116308 TCTCCATGAATTCGCCGGTA 58.884 50.0 1.90 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 2967 0.771127 TCCAGTGAAGGTGAAAGGGG 59.229 55.000 0.00 0.0 0.00 4.79 R
2308 3714 1.274167 CAGCCCAACACTTGCATTGAT 59.726 47.619 2.94 0.0 0.00 2.57 R
2843 4251 0.035152 CATGCTGGACAAGGGCACTA 60.035 55.000 0.00 0.0 38.83 2.74 R
3730 9173 0.249489 GATCGATCGGGTTGGAGGTG 60.249 60.000 16.41 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 87 6.381801 GCTAAGCATGTGAGTTTTGTAATGT 58.618 36.000 0.00 0.00 0.00 2.71
89 97 3.673809 AGTTTTGTAATGTCGCGAGAGTC 59.326 43.478 10.21 3.88 43.49 3.36
94 102 0.532573 AATGTCGCGAGAGTCATGGT 59.467 50.000 10.24 0.00 43.49 3.55
106 114 4.036518 AGAGTCATGGTCTATTCTTGCCT 58.963 43.478 0.00 0.00 0.00 4.75
115 123 3.691609 GTCTATTCTTGCCTTCTGTTGGG 59.308 47.826 0.00 0.00 0.00 4.12
120 128 2.046314 GCCTTCTGTTGGGCGCTA 60.046 61.111 7.64 0.00 38.91 4.26
132 140 2.790433 TGGGCGCTATTTCAAACTCTT 58.210 42.857 7.64 0.00 0.00 2.85
133 141 3.153919 TGGGCGCTATTTCAAACTCTTT 58.846 40.909 7.64 0.00 0.00 2.52
224 233 2.986728 ACCTTGGGATTAGAACCACACT 59.013 45.455 0.00 0.00 36.27 3.55
231 240 4.262894 GGGATTAGAACCACACTTGTCTCA 60.263 45.833 0.00 0.00 0.00 3.27
308 317 0.034059 CTCACCCACGATATCCCAGC 59.966 60.000 0.00 0.00 0.00 4.85
316 325 3.511540 CCACGATATCCCAGCATCTCTTA 59.488 47.826 0.00 0.00 0.00 2.10
345 354 1.136305 ACCGACATACCATCAAGACCG 59.864 52.381 0.00 0.00 0.00 4.79
361 370 4.810191 AGACCGAGAGCTTTTATGTCTT 57.190 40.909 0.00 0.00 0.00 3.01
362 371 4.749976 AGACCGAGAGCTTTTATGTCTTC 58.250 43.478 0.00 0.00 0.00 2.87
399 408 4.597004 TCGAGAGTAACACATACCTCCTT 58.403 43.478 0.00 0.00 34.89 3.36
402 411 4.342359 AGAGTAACACATACCTCCTTCGT 58.658 43.478 0.00 0.00 34.89 3.85
451 461 0.886490 GCCATCAGTTATGCGAGGGG 60.886 60.000 0.00 0.00 33.68 4.79
486 1199 0.659957 GCTCCTCAATTCCGATGCAC 59.340 55.000 0.00 0.00 0.00 4.57
493 1206 0.595588 AATTCCGATGCACGCACAAA 59.404 45.000 0.00 0.00 41.07 2.83
534 1247 3.321648 TCAGCCACCATCGCCACT 61.322 61.111 0.00 0.00 0.00 4.00
538 1251 1.675641 GCCACCATCGCCACTTTCT 60.676 57.895 0.00 0.00 0.00 2.52
539 1252 1.244019 GCCACCATCGCCACTTTCTT 61.244 55.000 0.00 0.00 0.00 2.52
540 1253 1.247567 CCACCATCGCCACTTTCTTT 58.752 50.000 0.00 0.00 0.00 2.52
541 1254 1.200020 CCACCATCGCCACTTTCTTTC 59.800 52.381 0.00 0.00 0.00 2.62
542 1255 2.154462 CACCATCGCCACTTTCTTTCT 58.846 47.619 0.00 0.00 0.00 2.52
543 1256 2.160417 CACCATCGCCACTTTCTTTCTC 59.840 50.000 0.00 0.00 0.00 2.87
544 1257 2.224523 ACCATCGCCACTTTCTTTCTCA 60.225 45.455 0.00 0.00 0.00 3.27
566 1279 1.270907 CTCTGCCTCCACTACACCTT 58.729 55.000 0.00 0.00 0.00 3.50
576 1289 4.878968 TCCACTACACCTTCATCATCCTA 58.121 43.478 0.00 0.00 0.00 2.94
585 1298 6.825721 ACACCTTCATCATCCTATTTCAGTTC 59.174 38.462 0.00 0.00 0.00 3.01
586 1299 6.261826 CACCTTCATCATCCTATTTCAGTTCC 59.738 42.308 0.00 0.00 0.00 3.62
589 1302 8.213679 CCTTCATCATCCTATTTCAGTTCCTTA 58.786 37.037 0.00 0.00 0.00 2.69
590 1303 9.790344 CTTCATCATCCTATTTCAGTTCCTTAT 57.210 33.333 0.00 0.00 0.00 1.73
592 1305 9.784531 TCATCATCCTATTTCAGTTCCTTATTC 57.215 33.333 0.00 0.00 0.00 1.75
593 1306 9.790344 CATCATCCTATTTCAGTTCCTTATTCT 57.210 33.333 0.00 0.00 0.00 2.40
594 1307 9.790344 ATCATCCTATTTCAGTTCCTTATTCTG 57.210 33.333 0.00 0.00 0.00 3.02
595 1308 8.772250 TCATCCTATTTCAGTTCCTTATTCTGT 58.228 33.333 0.00 0.00 0.00 3.41
596 1309 9.401058 CATCCTATTTCAGTTCCTTATTCTGTT 57.599 33.333 0.00 0.00 0.00 3.16
599 1312 9.846248 CCTATTTCAGTTCCTTATTCTGTTTTG 57.154 33.333 0.00 0.00 0.00 2.44
600 1313 9.346725 CTATTTCAGTTCCTTATTCTGTTTTGC 57.653 33.333 0.00 0.00 0.00 3.68
601 1314 6.959639 TTCAGTTCCTTATTCTGTTTTGCT 57.040 33.333 0.00 0.00 0.00 3.91
602 1315 8.458573 TTTCAGTTCCTTATTCTGTTTTGCTA 57.541 30.769 0.00 0.00 0.00 3.49
603 1316 8.458573 TTCAGTTCCTTATTCTGTTTTGCTAA 57.541 30.769 0.00 0.00 0.00 3.09
604 1317 8.458573 TCAGTTCCTTATTCTGTTTTGCTAAA 57.541 30.769 0.00 0.00 0.00 1.85
605 1318 8.567948 TCAGTTCCTTATTCTGTTTTGCTAAAG 58.432 33.333 0.00 0.00 0.00 1.85
606 1319 7.327032 CAGTTCCTTATTCTGTTTTGCTAAAGC 59.673 37.037 0.00 0.00 42.50 3.51
635 1348 9.783081 ATCTAGATGTGTCATAAATATTGCACA 57.217 29.630 3.89 0.00 40.42 4.57
636 1349 9.783081 TCTAGATGTGTCATAAATATTGCACAT 57.217 29.630 15.93 15.93 46.19 3.21
642 1355 9.394767 TGTGTCATAAATATTGCACATCTAAGT 57.605 29.630 0.00 0.00 32.79 2.24
695 1896 9.651913 ACTTTTAAAATAGCAGAGAAGAGAGAG 57.348 33.333 0.09 0.00 0.00 3.20
697 1898 9.868277 TTTTAAAATAGCAGAGAAGAGAGAGAG 57.132 33.333 0.00 0.00 0.00 3.20
698 1899 8.815565 TTAAAATAGCAGAGAAGAGAGAGAGA 57.184 34.615 0.00 0.00 0.00 3.10
699 1900 6.949352 AAATAGCAGAGAAGAGAGAGAGAG 57.051 41.667 0.00 0.00 0.00 3.20
700 1901 5.894298 ATAGCAGAGAAGAGAGAGAGAGA 57.106 43.478 0.00 0.00 0.00 3.10
702 1903 5.121380 AGCAGAGAAGAGAGAGAGAGATT 57.879 43.478 0.00 0.00 0.00 2.40
703 1904 5.513233 AGCAGAGAAGAGAGAGAGAGATTT 58.487 41.667 0.00 0.00 0.00 2.17
704 1905 5.954150 AGCAGAGAAGAGAGAGAGAGATTTT 59.046 40.000 0.00 0.00 0.00 1.82
706 1907 6.532657 GCAGAGAAGAGAGAGAGAGATTTTTG 59.467 42.308 0.00 0.00 0.00 2.44
710 2049 5.343307 AGAGAGAGAGAGATTTTTGAGCC 57.657 43.478 0.00 0.00 0.00 4.70
749 2088 1.161843 GATCGAGAGAGATCGGTCCC 58.838 60.000 0.00 0.00 45.09 4.46
750 2089 1.271163 GATCGAGAGAGATCGGTCCCT 60.271 57.143 0.00 0.00 45.09 4.20
753 2092 0.183971 GAGAGAGATCGGTCCCTCCA 59.816 60.000 3.22 0.00 35.57 3.86
765 2135 1.913762 CCCTCCACCTCCACGTTCT 60.914 63.158 0.00 0.00 0.00 3.01
844 2214 3.758023 AGCACACGAATCATCCAAAATCA 59.242 39.130 0.00 0.00 0.00 2.57
1074 2460 3.139397 GTCTCTCTCCCCTCCTCTGATTA 59.861 52.174 0.00 0.00 0.00 1.75
1096 2482 1.519455 CTCCGGTGCCGATCTTGAC 60.519 63.158 12.71 0.00 42.83 3.18
1204 2595 2.126189 GGGCGTCGTGAGTACCAC 60.126 66.667 0.00 4.84 42.30 4.16
1279 2670 1.119574 AGCAGTGTCCCAGTTACGGT 61.120 55.000 0.00 0.00 0.00 4.83
1337 2735 5.414454 ACGGTACAAATGCATGTTAGAATGT 59.586 36.000 0.00 0.31 34.75 2.71
1340 2738 7.090173 GGTACAAATGCATGTTAGAATGTTGT 58.910 34.615 0.00 6.40 34.75 3.32
1497 2897 5.365895 AGACTATGGACCCTAATGTGTTACC 59.634 44.000 0.00 0.00 0.00 2.85
1562 2964 1.979155 GCTGCCAGAACTTTCCCCC 60.979 63.158 0.00 0.00 0.00 5.40
1565 2967 0.112412 TGCCAGAACTTTCCCCCTTC 59.888 55.000 0.00 0.00 0.00 3.46
1578 2980 0.039764 CCCCTTCCCCTTTCACCTTC 59.960 60.000 0.00 0.00 0.00 3.46
1608 3011 4.401022 TGTGCATCTTTGATTCCTTGACT 58.599 39.130 0.00 0.00 0.00 3.41
1622 3025 3.997021 TCCTTGACTCGAAGCATTTCTTC 59.003 43.478 0.00 0.00 46.01 2.87
1736 3139 2.723124 GGTTTCGGTAACCGTGTCTA 57.277 50.000 0.00 0.00 46.48 2.59
1821 3226 4.799917 GCAGGAACTAGGAAAAACGAGTCT 60.800 45.833 0.00 0.00 36.02 3.24
1910 3315 2.500098 AGTCAGATGTAAGCCGCCTTTA 59.500 45.455 0.00 0.00 32.47 1.85
1928 3333 4.762251 CCTTTACTCCAACTCTCCCTTTTG 59.238 45.833 0.00 0.00 0.00 2.44
1963 3368 8.570488 TGAATCATGTATAAACATCTGATTGCC 58.430 33.333 10.49 1.72 44.70 4.52
1970 3375 8.584157 TGTATAAACATCTGATTGCCTGTTTTT 58.416 29.630 10.50 6.76 40.95 1.94
2055 3461 6.716628 AGCAATGTCCAGTTCTTGAGATTTTA 59.283 34.615 0.00 0.00 0.00 1.52
2140 3546 3.010200 ACTCCAGGGCTGAAATCAATC 57.990 47.619 0.00 0.00 0.00 2.67
2237 3643 4.758773 TCTGCAATATGGTGATCACTGA 57.241 40.909 24.50 12.55 0.00 3.41
2308 3714 1.116308 TCTCCATGAATTCGCCGGTA 58.884 50.000 1.90 0.00 0.00 4.02
2394 3800 4.156455 AGAACTGTCAGTTGGTGTTGAT 57.844 40.909 22.83 0.00 38.80 2.57
2472 3878 2.993899 CACGTATCCGGATCTTATTGCC 59.006 50.000 23.08 0.00 38.78 4.52
2502 3908 6.265649 TCCACCTGTAAGTATCTTCTCTATGC 59.734 42.308 0.00 0.00 0.00 3.14
2714 4122 8.191534 ACTACCACTTAGTAAAGTCACATTCT 57.808 34.615 0.00 0.00 44.28 2.40
2720 4128 7.063544 CACTTAGTAAAGTCACATTCTAGCACC 59.936 40.741 0.00 0.00 44.28 5.01
2783 4191 5.467735 CGAGAGCACATTGATATTTGGATCA 59.532 40.000 0.00 0.00 33.96 2.92
2843 4251 2.512692 TCAACAACTATGGCATGGCT 57.487 45.000 21.08 8.52 0.00 4.75
2871 4279 0.745486 TGTCCAGCATGAATGGCGAG 60.745 55.000 11.54 0.00 39.69 5.03
3048 4458 1.617947 GCCCCAGGTCATCTCTTCGT 61.618 60.000 0.00 0.00 0.00 3.85
3125 4535 0.895530 TGTTAGCCTTGACCTCCTCG 59.104 55.000 0.00 0.00 0.00 4.63
3239 4649 5.589855 ACAGACAGTGTGTTCAATTCATTCA 59.410 36.000 0.00 0.00 38.28 2.57
3348 4842 2.073816 AGCTGCGTGTTGTGGTATTAC 58.926 47.619 0.00 0.00 0.00 1.89
3350 4844 3.056393 AGCTGCGTGTTGTGGTATTACTA 60.056 43.478 0.00 0.00 0.00 1.82
3358 4852 6.249260 CGTGTTGTGGTATTACTAGTAACGAC 59.751 42.308 17.45 16.73 0.00 4.34
3387 7821 4.584743 AGAAGCTAAAGAACAAAACCTGGG 59.415 41.667 0.00 0.00 0.00 4.45
3389 7823 4.542697 AGCTAAAGAACAAAACCTGGGAA 58.457 39.130 0.00 0.00 0.00 3.97
3392 7826 5.753438 GCTAAAGAACAAAACCTGGGAAAAG 59.247 40.000 0.00 0.00 0.00 2.27
3404 7839 4.010349 CCTGGGAAAAGAGTTGTCATACC 58.990 47.826 0.00 0.00 0.00 2.73
3436 7871 5.651530 ACTGTTTATGTGAGGTATGAGACG 58.348 41.667 0.00 0.00 0.00 4.18
3484 7919 4.095782 TGAGTTCTTTTGTTTCTTCGGTGG 59.904 41.667 0.00 0.00 0.00 4.61
3504 7939 1.367659 GACGGAGCTAGTACAGACGT 58.632 55.000 0.00 0.00 34.68 4.34
3516 7951 4.430765 AGACGTTACCCTGGCGCG 62.431 66.667 0.00 0.00 0.00 6.86
3583 8018 1.643310 GAGGAGATGGAGATCCCCAG 58.357 60.000 1.25 0.00 39.97 4.45
3584 8019 0.193069 AGGAGATGGAGATCCCCAGG 59.807 60.000 1.25 0.00 39.97 4.45
3585 8020 1.487850 GGAGATGGAGATCCCCAGGC 61.488 65.000 1.25 0.00 39.97 4.85
3586 8021 0.473501 GAGATGGAGATCCCCAGGCT 60.474 60.000 1.25 1.48 39.97 4.58
3587 8022 0.870313 AGATGGAGATCCCCAGGCTA 59.130 55.000 1.25 0.00 39.97 3.93
3588 8023 1.203288 AGATGGAGATCCCCAGGCTAG 60.203 57.143 1.25 0.00 39.97 3.42
3589 8024 0.870313 ATGGAGATCCCCAGGCTAGA 59.130 55.000 1.25 0.00 39.97 2.43
3590 8025 0.105453 TGGAGATCCCCAGGCTAGAC 60.105 60.000 0.00 0.00 34.29 2.59
3591 8026 0.834261 GGAGATCCCCAGGCTAGACC 60.834 65.000 0.00 0.00 39.61 3.85
3592 8027 0.834261 GAGATCCCCAGGCTAGACCC 60.834 65.000 0.00 0.00 40.58 4.46
3593 8028 1.237458 GATCCCCAGGCTAGACCCT 59.763 63.158 0.00 0.00 40.58 4.34
3594 8029 0.834261 GATCCCCAGGCTAGACCCTC 60.834 65.000 0.00 0.00 40.58 4.30
3595 8030 1.603633 ATCCCCAGGCTAGACCCTCA 61.604 60.000 0.00 0.00 40.58 3.86
3607 8042 5.236695 GGCTAGACCCTCACGATAAATTTTC 59.763 44.000 0.00 0.00 0.00 2.29
3618 8053 4.764823 ACGATAAATTTTCCTTGTGCCAGA 59.235 37.500 0.00 0.00 0.00 3.86
3622 8057 1.691196 TTTTCCTTGTGCCAGACCAG 58.309 50.000 0.00 0.00 0.00 4.00
3687 8122 3.394588 GCAAGCGCTGCGTACATA 58.605 55.556 24.04 0.00 42.37 2.29
3688 8123 1.012234 GCAAGCGCTGCGTACATAC 60.012 57.895 24.04 5.41 42.37 2.39
3689 8124 1.692148 GCAAGCGCTGCGTACATACA 61.692 55.000 24.04 0.00 42.37 2.29
3690 8125 0.930310 CAAGCGCTGCGTACATACAT 59.070 50.000 24.04 0.00 0.00 2.29
3691 8126 0.930310 AAGCGCTGCGTACATACATG 59.070 50.000 24.04 0.00 0.00 3.21
3692 8127 0.102300 AGCGCTGCGTACATACATGA 59.898 50.000 24.04 0.00 0.00 3.07
3693 8128 1.139989 GCGCTGCGTACATACATGAT 58.860 50.000 24.04 0.00 0.00 2.45
3694 8129 1.136529 GCGCTGCGTACATACATGATG 60.137 52.381 24.04 1.48 41.79 3.07
3695 8130 1.136529 CGCTGCGTACATACATGATGC 60.137 52.381 14.93 0.00 39.39 3.91
3696 8131 2.138320 GCTGCGTACATACATGATGCT 58.862 47.619 0.00 0.00 39.39 3.79
3697 8132 3.317150 GCTGCGTACATACATGATGCTA 58.683 45.455 0.00 0.00 39.39 3.49
3698 8133 3.928992 GCTGCGTACATACATGATGCTAT 59.071 43.478 0.00 0.00 39.39 2.97
3708 9151 8.260099 ACATACATGATGCTATATATGAGGCT 57.740 34.615 0.00 0.00 39.39 4.58
3730 9173 0.902531 TGGCAGTAACTCTAGGTGGC 59.097 55.000 0.00 0.00 0.00 5.01
3758 9202 2.075489 CCGATCGATCAGTACGCGC 61.075 63.158 24.40 0.00 0.00 6.86
3767 9211 1.138883 CAGTACGCGCCTGAAGCTA 59.861 57.895 18.60 0.00 40.39 3.32
3772 9216 1.006805 CGCGCCTGAAGCTAGCTAT 60.007 57.895 19.70 8.44 40.39 2.97
3773 9217 1.006314 CGCGCCTGAAGCTAGCTATC 61.006 60.000 19.70 17.19 40.39 2.08
3774 9218 0.316841 GCGCCTGAAGCTAGCTATCT 59.683 55.000 19.70 1.41 40.39 1.98
3775 9219 1.542030 GCGCCTGAAGCTAGCTATCTA 59.458 52.381 19.70 3.86 40.39 1.98
3791 9235 2.857592 TCTAGGTACCGTTTGATCGC 57.142 50.000 6.18 0.00 0.00 4.58
3821 9265 4.816786 GGAAACCAAGTTAAACGTAGCA 57.183 40.909 0.00 0.00 0.00 3.49
3822 9266 4.530388 GGAAACCAAGTTAAACGTAGCAC 58.470 43.478 0.00 0.00 0.00 4.40
3857 9301 2.467826 GCAGGCCAGAATCGTCAGC 61.468 63.158 5.01 0.00 0.00 4.26
3858 9302 1.078918 CAGGCCAGAATCGTCAGCA 60.079 57.895 5.01 0.00 0.00 4.41
3859 9303 1.088340 CAGGCCAGAATCGTCAGCAG 61.088 60.000 5.01 0.00 0.00 4.24
3860 9304 2.467826 GGCCAGAATCGTCAGCAGC 61.468 63.158 0.00 0.00 0.00 5.25
3861 9305 2.806856 GCCAGAATCGTCAGCAGCG 61.807 63.158 0.00 0.00 0.00 5.18
3862 9306 1.153765 CCAGAATCGTCAGCAGCGA 60.154 57.895 0.00 0.19 42.75 4.93
3863 9307 0.737367 CCAGAATCGTCAGCAGCGAA 60.737 55.000 1.75 0.00 41.84 4.70
3864 9308 1.070821 CAGAATCGTCAGCAGCGAAA 58.929 50.000 1.75 0.00 41.84 3.46
3865 9309 1.060266 CAGAATCGTCAGCAGCGAAAG 59.940 52.381 1.75 0.00 41.84 2.62
3955 9399 0.666913 CCTCCCAGGTACGTACGATG 59.333 60.000 24.41 18.39 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.818210 TCTTTGATGTTACGCACCACAAT 59.182 39.130 0.00 0.00 0.00 2.71
79 87 1.968704 ATAGACCATGACTCTCGCGA 58.031 50.000 9.26 9.26 0.00 5.87
89 97 4.521146 ACAGAAGGCAAGAATAGACCATG 58.479 43.478 0.00 0.00 0.00 3.66
94 102 3.955471 CCCAACAGAAGGCAAGAATAGA 58.045 45.455 0.00 0.00 0.00 1.98
106 114 2.192664 TGAAATAGCGCCCAACAGAA 57.807 45.000 2.29 0.00 0.00 3.02
115 123 5.538067 AGAGAAAGAGTTTGAAATAGCGC 57.462 39.130 0.00 0.00 0.00 5.92
133 141 9.466497 AGGCTTGTCATTTCATTAATTAAGAGA 57.534 29.630 3.94 1.95 0.00 3.10
152 160 4.479786 TTTAACAAGGCAAAAGGCTTGT 57.520 36.364 25.52 25.52 42.01 3.16
177 185 3.374367 GCAACCGGAGAGAATAAAAGACC 59.626 47.826 9.46 0.00 0.00 3.85
184 192 2.433239 GGTAAGGCAACCGGAGAGAATA 59.567 50.000 9.46 0.00 37.17 1.75
224 233 4.644234 TGCTTCAAAGTTGGAATGAGACAA 59.356 37.500 0.00 0.00 0.00 3.18
231 240 7.669427 TGATAACAATGCTTCAAAGTTGGAAT 58.331 30.769 0.00 0.00 0.00 3.01
308 317 9.916397 GTATGTCGGTTGTTTTTATAAGAGATG 57.084 33.333 0.00 0.00 0.00 2.90
316 325 7.392113 TCTTGATGGTATGTCGGTTGTTTTTAT 59.608 33.333 0.00 0.00 0.00 1.40
345 354 6.428159 TGGAGTTTGAAGACATAAAAGCTCTC 59.572 38.462 0.00 0.00 0.00 3.20
361 370 2.038426 TCTCGAAGGCATTGGAGTTTGA 59.962 45.455 20.20 1.37 40.88 2.69
362 371 2.417933 CTCTCGAAGGCATTGGAGTTTG 59.582 50.000 20.20 9.98 40.88 2.93
399 408 3.181513 GCTCACTCGTGAATACACTACGA 60.182 47.826 1.02 0.00 43.99 3.43
402 411 4.733850 CAAGCTCACTCGTGAATACACTA 58.266 43.478 1.02 0.00 43.99 2.74
422 431 1.246649 AACTGATGGCATGAACGCAA 58.753 45.000 3.81 0.00 0.00 4.85
451 461 2.763448 AGGAGCTCCTCTAACATGTGAC 59.237 50.000 30.40 0.00 44.77 3.67
486 1199 6.072733 CCAGCAATTATTTTCTTTTTGTGCG 58.927 36.000 0.00 0.00 34.72 5.34
518 1231 1.926511 GAAAGTGGCGATGGTGGCTG 61.927 60.000 0.00 0.00 35.06 4.85
534 1247 3.054802 GGAGGCAGAGGATGAGAAAGAAA 60.055 47.826 0.00 0.00 0.00 2.52
538 1251 1.556911 GTGGAGGCAGAGGATGAGAAA 59.443 52.381 0.00 0.00 0.00 2.52
539 1252 1.198713 GTGGAGGCAGAGGATGAGAA 58.801 55.000 0.00 0.00 0.00 2.87
540 1253 0.337773 AGTGGAGGCAGAGGATGAGA 59.662 55.000 0.00 0.00 0.00 3.27
541 1254 1.686052 GTAGTGGAGGCAGAGGATGAG 59.314 57.143 0.00 0.00 0.00 2.90
542 1255 1.007118 TGTAGTGGAGGCAGAGGATGA 59.993 52.381 0.00 0.00 0.00 2.92
543 1256 1.137872 GTGTAGTGGAGGCAGAGGATG 59.862 57.143 0.00 0.00 0.00 3.51
544 1257 1.490574 GTGTAGTGGAGGCAGAGGAT 58.509 55.000 0.00 0.00 0.00 3.24
566 1279 9.784531 GAATAAGGAACTGAAATAGGATGATGA 57.215 33.333 0.00 0.00 40.86 2.92
576 1289 7.955918 AGCAAAACAGAATAAGGAACTGAAAT 58.044 30.769 0.00 0.00 40.86 2.17
609 1322 9.783081 TGTGCAATATTTATGACACATCTAGAT 57.217 29.630 0.00 0.00 33.26 1.98
610 1323 9.783081 ATGTGCAATATTTATGACACATCTAGA 57.217 29.630 0.00 0.00 39.26 2.43
616 1329 9.394767 ACTTAGATGTGCAATATTTATGACACA 57.605 29.630 0.00 0.00 38.34 3.72
617 1330 9.869844 GACTTAGATGTGCAATATTTATGACAC 57.130 33.333 0.00 0.00 0.00 3.67
618 1331 9.056005 GGACTTAGATGTGCAATATTTATGACA 57.944 33.333 0.00 0.00 0.00 3.58
619 1332 9.277783 AGGACTTAGATGTGCAATATTTATGAC 57.722 33.333 0.00 0.00 0.00 3.06
669 1870 9.651913 CTCTCTCTTCTCTGCTATTTTAAAAGT 57.348 33.333 6.79 0.00 0.00 2.66
673 1874 8.815565 TCTCTCTCTCTTCTCTGCTATTTTAA 57.184 34.615 0.00 0.00 0.00 1.52
680 1881 4.785346 ATCTCTCTCTCTCTTCTCTGCT 57.215 45.455 0.00 0.00 0.00 4.24
681 1882 5.841957 AAATCTCTCTCTCTCTTCTCTGC 57.158 43.478 0.00 0.00 0.00 4.26
682 1883 7.829725 TCAAAAATCTCTCTCTCTCTTCTCTG 58.170 38.462 0.00 0.00 0.00 3.35
683 1884 7.363268 GCTCAAAAATCTCTCTCTCTCTTCTCT 60.363 40.741 0.00 0.00 0.00 3.10
684 1885 6.753744 GCTCAAAAATCTCTCTCTCTCTTCTC 59.246 42.308 0.00 0.00 0.00 2.87
685 1886 6.351286 GGCTCAAAAATCTCTCTCTCTCTTCT 60.351 42.308 0.00 0.00 0.00 2.85
688 1889 4.142182 CGGCTCAAAAATCTCTCTCTCTCT 60.142 45.833 0.00 0.00 0.00 3.10
689 1890 4.111916 CGGCTCAAAAATCTCTCTCTCTC 58.888 47.826 0.00 0.00 0.00 3.20
690 1891 3.118811 CCGGCTCAAAAATCTCTCTCTCT 60.119 47.826 0.00 0.00 0.00 3.10
691 1892 3.118956 TCCGGCTCAAAAATCTCTCTCTC 60.119 47.826 0.00 0.00 0.00 3.20
693 1894 2.933260 GTCCGGCTCAAAAATCTCTCTC 59.067 50.000 0.00 0.00 0.00 3.20
694 1895 2.303022 TGTCCGGCTCAAAAATCTCTCT 59.697 45.455 0.00 0.00 0.00 3.10
695 1896 2.699954 TGTCCGGCTCAAAAATCTCTC 58.300 47.619 0.00 0.00 0.00 3.20
697 1898 3.502211 TCTTTGTCCGGCTCAAAAATCTC 59.498 43.478 19.50 0.00 34.96 2.75
698 1899 3.486383 TCTTTGTCCGGCTCAAAAATCT 58.514 40.909 19.50 0.00 34.96 2.40
699 1900 3.915437 TCTTTGTCCGGCTCAAAAATC 57.085 42.857 19.50 0.00 34.96 2.17
700 1901 4.664150 TTTCTTTGTCCGGCTCAAAAAT 57.336 36.364 19.50 0.00 34.96 1.82
702 1903 4.457834 TTTTTCTTTGTCCGGCTCAAAA 57.542 36.364 19.50 11.47 34.96 2.44
725 2064 3.750371 ACCGATCTCTCTCGATCATCTT 58.250 45.455 0.00 0.00 41.12 2.40
744 2083 3.391382 CGTGGAGGTGGAGGGACC 61.391 72.222 0.00 0.00 39.54 4.46
745 2084 2.168666 GAACGTGGAGGTGGAGGGAC 62.169 65.000 0.00 0.00 0.00 4.46
747 2086 1.913762 AGAACGTGGAGGTGGAGGG 60.914 63.158 0.00 0.00 0.00 4.30
749 2088 4.996976 CAGAACGTGGAGGTGGAG 57.003 61.111 0.00 0.00 0.00 3.86
772 2142 3.637273 AAGCTGTCGTGGGACCCC 61.637 66.667 8.45 2.69 42.73 4.95
773 2143 2.358737 CAAGCTGTCGTGGGACCC 60.359 66.667 2.45 2.45 42.73 4.46
779 2149 2.356313 ACCGAGCAAGCTGTCGTG 60.356 61.111 0.00 6.52 34.27 4.35
811 2181 3.753539 GTGTGCTCGTGTCGCGTC 61.754 66.667 5.77 0.00 42.13 5.19
814 2184 2.267227 GATTCGTGTGCTCGTGTCGC 62.267 60.000 0.00 0.00 0.00 5.19
815 2185 1.001745 TGATTCGTGTGCTCGTGTCG 61.002 55.000 0.00 0.00 0.00 4.35
816 2186 1.321743 GATGATTCGTGTGCTCGTGTC 59.678 52.381 0.00 0.00 0.00 3.67
817 2187 1.350193 GATGATTCGTGTGCTCGTGT 58.650 50.000 0.00 0.00 0.00 4.49
818 2188 0.647410 GGATGATTCGTGTGCTCGTG 59.353 55.000 0.00 0.00 0.00 4.35
819 2189 0.246360 TGGATGATTCGTGTGCTCGT 59.754 50.000 0.00 0.00 0.00 4.18
820 2190 1.358877 TTGGATGATTCGTGTGCTCG 58.641 50.000 0.00 0.00 0.00 5.03
821 2191 3.829886 TTTTGGATGATTCGTGTGCTC 57.170 42.857 0.00 0.00 0.00 4.26
822 2192 3.758023 TGATTTTGGATGATTCGTGTGCT 59.242 39.130 0.00 0.00 0.00 4.40
823 2193 4.095410 TGATTTTGGATGATTCGTGTGC 57.905 40.909 0.00 0.00 0.00 4.57
824 2194 7.449827 CAAAATGATTTTGGATGATTCGTGTG 58.550 34.615 20.03 0.00 44.75 3.82
825 2195 7.585286 CAAAATGATTTTGGATGATTCGTGT 57.415 32.000 20.03 0.00 44.75 4.49
844 2214 7.599171 CCCCTATCGTTTTCACTTTACAAAAT 58.401 34.615 0.00 0.00 0.00 1.82
1096 2482 4.279659 CAAATCATCACATCACAGCATCG 58.720 43.478 0.00 0.00 0.00 3.84
1204 2595 3.136750 CGAGGGAGAGGATGGCAG 58.863 66.667 0.00 0.00 0.00 4.85
1337 2735 3.194861 CAAAATAGAGATCGGCGGACAA 58.805 45.455 7.21 0.00 0.00 3.18
1340 2738 2.821546 CACAAAATAGAGATCGGCGGA 58.178 47.619 7.21 0.00 0.00 5.54
1487 2887 9.920946 ACAAAGATAATATCCTGGTAACACATT 57.079 29.630 0.00 0.00 46.17 2.71
1497 2897 7.387948 CGGTCCCTAAACAAAGATAATATCCTG 59.612 40.741 0.00 0.00 0.00 3.86
1562 2964 2.508526 CAGTGAAGGTGAAAGGGGAAG 58.491 52.381 0.00 0.00 0.00 3.46
1565 2967 0.771127 TCCAGTGAAGGTGAAAGGGG 59.229 55.000 0.00 0.00 0.00 4.79
1578 2980 4.713824 ATCAAAGATGCACAATCCAGTG 57.286 40.909 0.00 0.00 42.37 3.66
1622 3025 9.722184 ATATACTGATCATGAGTTCATTTCCTG 57.278 33.333 0.09 0.00 33.61 3.86
1736 3139 6.387041 TGTAGTAGCGCACAAATACTAGAT 57.613 37.500 11.47 0.00 33.77 1.98
1821 3226 2.418746 GGTCTGAAGCTCGCCAAAGATA 60.419 50.000 0.00 0.00 0.00 1.98
1910 3315 1.777272 AGCAAAAGGGAGAGTTGGAGT 59.223 47.619 0.00 0.00 0.00 3.85
2038 3443 8.066595 CAGCGAATATAAAATCTCAAGAACTGG 58.933 37.037 0.00 0.00 0.00 4.00
2055 3461 9.445878 AGATGTGAAATATTCATCAGCGAATAT 57.554 29.630 14.63 0.00 46.00 1.28
2308 3714 1.274167 CAGCCCAACACTTGCATTGAT 59.726 47.619 2.94 0.00 0.00 2.57
2394 3800 2.425312 AGTTGCCGTGTCAAATGAAACA 59.575 40.909 4.70 0.00 31.76 2.83
2472 3878 5.654650 AGAAGATACTTACAGGTGGAGTGAG 59.345 44.000 0.00 0.00 0.00 3.51
2558 3964 9.160496 CTTAGTATGGAATCAGATTGCTAATCC 57.840 37.037 15.07 3.23 38.71 3.01
2714 4122 2.047274 GCTCCAACAGCGGTGCTA 60.047 61.111 15.82 0.00 41.37 3.49
2783 4191 1.003355 CGGGTCCAATGAGTGCTGT 60.003 57.895 0.00 0.00 0.00 4.40
2843 4251 0.035152 CATGCTGGACAAGGGCACTA 60.035 55.000 0.00 0.00 38.83 2.74
2871 4279 2.000447 GATGGTAACGAGTGACTTGGC 59.000 52.381 4.63 0.00 42.51 4.52
2885 4293 1.380785 AACCTCGCCGGAGATGGTA 60.381 57.895 22.61 0.00 43.27 3.25
3048 4458 7.673180 AGGAATTCAAGATCAAAATGAAAGCA 58.327 30.769 7.93 0.00 36.72 3.91
3119 4529 8.615211 TGATGATCAAATCAAAATAACGAGGAG 58.385 33.333 0.00 0.00 43.50 3.69
3120 4530 8.504812 TGATGATCAAATCAAAATAACGAGGA 57.495 30.769 0.00 0.00 43.50 3.71
3125 4535 6.074676 GGCGCTGATGATCAAATCAAAATAAC 60.075 38.462 7.64 0.00 43.50 1.89
3239 4649 2.564062 CAACTGGAACAAGGGCATCAAT 59.436 45.455 0.00 0.00 38.70 2.57
3387 7821 4.906618 TCCCAGGTATGACAACTCTTTTC 58.093 43.478 0.00 0.00 0.00 2.29
3389 7823 6.636454 TTATCCCAGGTATGACAACTCTTT 57.364 37.500 0.00 0.00 0.00 2.52
3392 7826 5.817816 CAGTTTATCCCAGGTATGACAACTC 59.182 44.000 0.00 0.00 0.00 3.01
3404 7839 6.180472 ACCTCACATAAACAGTTTATCCCAG 58.820 40.000 14.64 10.30 33.73 4.45
3460 7895 5.392595 CCACCGAAGAAACAAAAGAACTCAA 60.393 40.000 0.00 0.00 0.00 3.02
3461 7896 4.095782 CCACCGAAGAAACAAAAGAACTCA 59.904 41.667 0.00 0.00 0.00 3.41
3475 7910 2.488771 TAGCTCCGTCCCACCGAAGA 62.489 60.000 0.00 0.00 0.00 2.87
3484 7919 0.656785 CGTCTGTACTAGCTCCGTCC 59.343 60.000 0.00 0.00 0.00 4.79
3516 7951 1.629013 GCTCATTAAACTTTGGGCGC 58.371 50.000 0.00 0.00 28.09 6.53
3557 7992 3.309121 GGATCTCCATCTCCTCCTCCTAG 60.309 56.522 0.00 0.00 35.64 3.02
3558 7993 2.652348 GGATCTCCATCTCCTCCTCCTA 59.348 54.545 0.00 0.00 35.64 2.94
3559 7994 1.432807 GGATCTCCATCTCCTCCTCCT 59.567 57.143 0.00 0.00 35.64 3.69
3583 8018 4.338379 AATTTATCGTGAGGGTCTAGCC 57.662 45.455 0.00 0.00 0.00 3.93
3584 8019 5.236695 GGAAAATTTATCGTGAGGGTCTAGC 59.763 44.000 0.00 0.00 0.00 3.42
3585 8020 6.583562 AGGAAAATTTATCGTGAGGGTCTAG 58.416 40.000 0.00 0.00 0.00 2.43
3586 8021 6.555463 AGGAAAATTTATCGTGAGGGTCTA 57.445 37.500 0.00 0.00 0.00 2.59
3587 8022 5.437191 AGGAAAATTTATCGTGAGGGTCT 57.563 39.130 0.00 0.00 0.00 3.85
3588 8023 5.414765 ACAAGGAAAATTTATCGTGAGGGTC 59.585 40.000 11.42 0.00 0.00 4.46
3589 8024 5.183140 CACAAGGAAAATTTATCGTGAGGGT 59.817 40.000 11.42 0.00 0.00 4.34
3590 8025 5.640732 CACAAGGAAAATTTATCGTGAGGG 58.359 41.667 11.42 1.40 0.00 4.30
3591 8026 5.095490 GCACAAGGAAAATTTATCGTGAGG 58.905 41.667 11.42 6.33 0.00 3.86
3592 8027 5.095490 GGCACAAGGAAAATTTATCGTGAG 58.905 41.667 11.42 6.64 0.00 3.51
3593 8028 4.520874 TGGCACAAGGAAAATTTATCGTGA 59.479 37.500 11.42 0.00 31.92 4.35
3594 8029 4.804108 TGGCACAAGGAAAATTTATCGTG 58.196 39.130 0.00 0.00 31.92 4.35
3595 8030 4.764823 TCTGGCACAAGGAAAATTTATCGT 59.235 37.500 0.00 0.00 38.70 3.73
3607 8042 2.674380 GGCTGGTCTGGCACAAGG 60.674 66.667 0.00 0.00 38.70 3.61
3618 8053 0.540597 GCTTTTCTTGAGGGGCTGGT 60.541 55.000 0.00 0.00 0.00 4.00
3687 8122 5.362143 ACGAGCCTCATATATAGCATCATGT 59.638 40.000 0.00 0.00 0.00 3.21
3688 8123 5.690857 CACGAGCCTCATATATAGCATCATG 59.309 44.000 0.00 0.00 0.00 3.07
3689 8124 5.221402 CCACGAGCCTCATATATAGCATCAT 60.221 44.000 0.00 0.00 0.00 2.45
3690 8125 4.098501 CCACGAGCCTCATATATAGCATCA 59.901 45.833 0.00 0.00 0.00 3.07
3691 8126 4.615949 CCACGAGCCTCATATATAGCATC 58.384 47.826 0.00 0.51 0.00 3.91
3692 8127 3.181471 GCCACGAGCCTCATATATAGCAT 60.181 47.826 0.00 0.00 34.35 3.79
3693 8128 2.166459 GCCACGAGCCTCATATATAGCA 59.834 50.000 0.00 0.00 34.35 3.49
3694 8129 2.166459 TGCCACGAGCCTCATATATAGC 59.834 50.000 0.00 0.00 42.71 2.97
3695 8130 3.445450 ACTGCCACGAGCCTCATATATAG 59.555 47.826 0.00 0.00 42.71 1.31
3696 8131 3.431415 ACTGCCACGAGCCTCATATATA 58.569 45.455 0.00 0.00 42.71 0.86
3697 8132 2.251818 ACTGCCACGAGCCTCATATAT 58.748 47.619 0.00 0.00 42.71 0.86
3698 8133 1.704641 ACTGCCACGAGCCTCATATA 58.295 50.000 0.00 0.00 42.71 0.86
3708 9151 1.816835 CACCTAGAGTTACTGCCACGA 59.183 52.381 0.00 0.00 0.00 4.35
3730 9173 0.249489 GATCGATCGGGTTGGAGGTG 60.249 60.000 16.41 0.00 0.00 4.00
3758 9202 4.703093 GGTACCTAGATAGCTAGCTTCAGG 59.297 50.000 24.88 21.28 42.29 3.86
3767 9211 4.215827 CGATCAAACGGTACCTAGATAGCT 59.784 45.833 10.90 0.00 0.00 3.32
3772 9216 1.406539 GGCGATCAAACGGTACCTAGA 59.593 52.381 10.90 2.68 0.00 2.43
3773 9217 1.537562 GGGCGATCAAACGGTACCTAG 60.538 57.143 10.90 0.00 0.00 3.02
3774 9218 0.461135 GGGCGATCAAACGGTACCTA 59.539 55.000 10.90 0.00 0.00 3.08
3775 9219 1.219935 GGGCGATCAAACGGTACCT 59.780 57.895 10.90 0.00 0.00 3.08
3804 9248 1.528161 GCGTGCTACGTTTAACTTGGT 59.472 47.619 0.00 0.00 44.73 3.67
3811 9255 0.798159 TCTCTCGCGTGCTACGTTTA 59.202 50.000 5.77 0.00 44.73 2.01
3816 9260 0.867753 CCATGTCTCTCGCGTGCTAC 60.868 60.000 5.77 5.90 0.00 3.58
3817 9261 1.433471 CCATGTCTCTCGCGTGCTA 59.567 57.895 5.77 0.00 0.00 3.49
3818 9262 2.182791 CCATGTCTCTCGCGTGCT 59.817 61.111 5.77 0.00 0.00 4.40
3819 9263 3.558411 GCCATGTCTCTCGCGTGC 61.558 66.667 5.77 0.00 0.00 5.34
3820 9264 3.250323 CGCCATGTCTCTCGCGTG 61.250 66.667 5.77 3.13 39.78 5.34
3821 9265 3.402691 CTCGCCATGTCTCTCGCGT 62.403 63.158 5.77 0.00 44.73 6.01
3822 9266 2.653448 CTCGCCATGTCTCTCGCG 60.653 66.667 0.00 0.00 45.76 5.87
3823 9267 2.959071 GCTCGCCATGTCTCTCGC 60.959 66.667 0.00 0.00 0.00 5.03
3824 9268 1.588403 CTGCTCGCCATGTCTCTCG 60.588 63.158 0.00 0.00 0.00 4.04
3825 9269 1.227205 CCTGCTCGCCATGTCTCTC 60.227 63.158 0.00 0.00 0.00 3.20
3826 9270 2.898738 CCTGCTCGCCATGTCTCT 59.101 61.111 0.00 0.00 0.00 3.10
3827 9271 2.894387 GCCTGCTCGCCATGTCTC 60.894 66.667 0.00 0.00 0.00 3.36
3845 9289 1.060266 CTTTCGCTGCTGACGATTCTG 59.940 52.381 9.94 0.00 39.65 3.02
3882 9326 1.063649 CCACTCGTACACGGGATCG 59.936 63.158 8.93 0.00 43.86 3.69
3885 9329 1.973281 GACCCACTCGTACACGGGA 60.973 63.158 8.93 0.00 43.86 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.